<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 02:42:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326965" ref_strand="+" ref_description="SGN-E326965 [cTOC-18-A23]">
      <seq>tgcaattctacttactacaaattttcagcaaaaaaatggctgatgaagttgtccttctgggaacttatgtgagtatgtttgctgtgagggtaaaaattgccctggctgaaaaggggatccaatatgagtacaaagaagagaacttggtgaacaaaagtcctttactcttacaaatgaatccaattcacaagaaaatcccagtgttgatccataatggaaaaccaatatgtgagtcactcataattgttgagtacatagatgaagtttggaatgacaaatcacctttgttgcctagtgatccttataagagagctcaagctaggttttgggctgattatgttgacaaaaagatttatgatggtggaaagaaaatttggacaacaaaagtggaggaacaagaagcagctaataaagaattcattgagtgtttgaaggtgttggaaggggaattgggagacaagccatacttcgatggagaaagttttggttttgtggatttggcactcattccttactatagctggttccctgcttatgaaaaatttggcaaatttagtattgaaccagagtgtcctaagtttgtggcttgggccaacaggtgtatgcaaaaggagaatgtctctaagtatctttctgatcctgacaaaatctatgattttgntgtaatgttgagacagaagattggcattgcctaaaagagacggatctagagcgggttctgcaggttcaactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="1640" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1340" g_stop="990" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="989" i_stop="390" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="389" g_stop="5" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="735" r_length="385" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E326965" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1340" e_stop="990"/>
          <exon e_start="389" e_stop="5"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAAATCTACTTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTGTCCNTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAGGTATGTAACTATCATAAAATATGTTTGTCATCTTAGTACATTTAGTTTAGATCCTATAATTTGTAAGAGCATGTTTTACTCATGGGTGTGACTTTTATGCTAACATAAATTTAGGTTTAGATACACCCTACCCTAGGGAGTAGCCTAGTGGCCAATCAACCGTTGTTGAAAATTCTAAGGTCTGATGTTCAAAATTCAGCTGAAACAAAAATACCAGTTGATTCTTTCATATGTTCTAGCCTGGATGTACAGCGTTAACTAGTATGTCTTGCTGGTGGGAGGTAGAAGGTATCATGTCTCTTGTTGTGGTGGGAGGTGGAAGGTATTCCGTGGAATTAGTCGAAGTAAGTGAGAGTTTCACACTCAAAAAATAAAAAATAAAATTAGGTTGAGATAGATTTAGATAGAGAGCTACAACTCTTGCTAGTCAGAGGTGTCAATTATCCTGTGGAATTATTCGAGGTGCACGAAAGTTGATCATCAAAAAATAATAAAAAAAAAAGTTTGAAATTGAGGTGTAGTGTAAGATTTATTCATTAATGAGCTAAATTTGATTGAAAAGGATGTAATTTTTTTTCTTTTTTTTGTGGGAGAATACAGATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGAAAAATTTGGCAAATTTAGTATTGAACCAGAGTGTCCTAAGTTTGTGGCTTGGGCCAACAGGTGTATGCAAAAGGAGAATGTCTCTAAGTATCTTTCTGATCCTGACAAAATCTATGATTTTGTTGTAATGTTGAGACAGAGGATTGGCATTGCCTAAAAGAGACGGATCTAGAGCGGGTTCTGCAGGTTCAACTGGA</genome_strand>
        <mrna_strand>TG-CAATTCTACTTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTTGTCCTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCAATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGAAAAATTTGGCAAATTTAGTATTGAACCAGAGTGTCCTAAGTTTGTGGCTTGGGCCAACAGGTGTATGCAAAAGGAGAATGTCTCTAAGTATCTTTCTGATCCTGACAAAATCTATGATTTTGNTGTAATGTTGAGACAGAAGATTGGCATTGCCTAAAAGAGACGGATCTAGAGCGGGTTCTGCAGGTTCAACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328109" ref_strand="+" ref_description="SGN-E328109 [cTOC-22-P3]">
      <seq>tgaagttgtccttctgggaacttatgtgagtatgtttgctgtgagggtaaaaattgccctggctgaaaaggggatccaatatgagtacaaagaagagaacttggtgaacaaaagtcctttactcttacaaatgaatccaattcacaagaaaatcccagtgttgatccataatggaaaaccaatatgtgagtcactcataattgttgagtacatagatgaagtttggaatgacaaatcacctttgttgcctagtgatccttataagagagctcaagctaggttttgggctgattatgttgacaaaaagatttatgatggtggaaagaaaatttggacaacaaaagtggaggaacaagaagcagctaataaagaattcattgagtgtttgaaggtgttggaaggggaattgggagacaagccatacttcgatggagaaagttttggttttgtggatttggcactcattccttactatagctggttccctgcttatgaaaaatttggcaaatttagtattgaaccagagtgtcctaagtttgtggcttgggccaacaggtgtatgcaaaaggagaatgtctctaagtatctttctgatcctgacnaaatctatgattttgttgtaatgttgagacagaggattggcattgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="1596" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1296" g_stop="990" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="989" i_stop="390" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="389" g_stop="47" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="650" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E328109" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1296" e_stop="990"/>
          <exon e_start="389" e_stop="47"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTGTCCNTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAGGTATGTAACTATCATAAAATATGTTTGTCATCTTAGTACATTTAGTTTAGATCCTATAATTTGTAAGAGCATGTTTTACTCATGGGTGTGACTTTTATGCTAACATAAATTTAGGTTTAGATACACCCTACCCTAGGGAGTAGCCTAGTGGCCAATCAACCGTTGTTGAAAATTCTAAGGTCTGATGTTCAAAATTCAGCTGAAACAAAAATACCAGTTGATTCTTTCATATGTTCTAGCCTGGATGTACAGCGTTAACTAGTATGTCTTGCTGGTGGGAGGTAGAAGGTATCATGTCTCTTGTTGTGGTGGGAGGTGGAAGGTATTCCGTGGAATTAGTCGAAGTAAGTGAGAGTTTCACACTCAAAAAATAAAAAATAAAATTAGGTTGAGATAGATTTAGATAGAGAGCTACAACTCTTGCTAGTCAGAGGTGTCAATTATCCTGTGGAATTATTCGAGGTGCACGAAAGTTGATCATCAAAAAATAATAAAAAAAAAAGTTTGAAATTGAGGTGTAGTGTAAGATTTATTCATTAATGAGCTAAATTTGATTGAAAAGGATGTAATTTTTTTTCTTTTTTTTGTGGGAGAATACAGATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGAAAAATTTGGCAAATTTAGTATTGAACCAGAGTGTCCTAAGTTTGTGGCTTGGGCCAACAGGTGTATGCAAAAGGAGAATGTCTCTAAGTATCTTTCTGATCCTGACAAAATCTATGATTTTGTTGTAATGTTGAGACAGAGGATTGGCATTGCCT</genome_strand>
        <mrna_strand>TGAAGTTGTCCTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCAATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGAAAAATTTGGCAAATTTAGTATTGAACCAGAGTGTCCTAAGTTTGTGGCTTGGGCCAACAGGTGTATGCAAAAGGAGAATGTCTCTAAGTATCTTTCTGATCCTGACNAAATCTATGATTTTGTTGTAATGTTGAGACAGAGGATTGGCATTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328623" ref_strand="+" ref_description="SGN-E328623 [cTOC-23-F18]">
      <seq>tgaagttgtccttctgggaacttatgtgagtatgtttgctgtgagggtaaaaattgccctggctgaaaaggggatccaatatgagtacaaagaagagaacttggtgaacaaaagtcctttactcttacaaatgaatccaattcacaagaaaatcccagtgttgatccataatggaaaaccaatatgtgagtcactcataattgttgagtacatagatgaagtttggaatgacaaatcacctttgttgcctagtgatccttataagagagctcaagctaggttttgggctgattatgttgacaaaaagatttatgatggtggaaagaaaatttggacaacaaaagtggaggaacaagaagcagctaataaagaattcattgagtgtttgaaggtgttggaaggggaattgggagacaagccatacttcgatggagaaagttttggttttgtggatttggcactcattccttactatagctggttccctgcttatgaaaaatttggcaaatttagtattgaaccagagtgtcctaagtttgtggcttgggccaacaggtgtatgcaaaaggagaatgtctctaagtatctttctgatcctgacaaaatctatgattttgttgtaatgttgagacagaggattggcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="1596" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1296" g_stop="990" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="989" i_stop="390" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="389" g_stop="50" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="647" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E328623" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1296" e_stop="990"/>
          <exon e_start="389" e_stop="50"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTGTCCNTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAGGTATGTAACTATCATAAAATATGTTTGTCATCTTAGTACATTTAGTTTAGATCCTATAATTTGTAAGAGCATGTTTTACTCATGGGTGTGACTTTTATGCTAACATAAATTTAGGTTTAGATACACCCTACCCTAGGGAGTAGCCTAGTGGCCAATCAACCGTTGTTGAAAATTCTAAGGTCTGATGTTCAAAATTCAGCTGAAACAAAAATACCAGTTGATTCTTTCATATGTTCTAGCCTGGATGTACAGCGTTAACTAGTATGTCTTGCTGGTGGGAGGTAGAAGGTATCATGTCTCTTGTTGTGGTGGGAGGTGGAAGGTATTCCGTGGAATTAGTCGAAGTAAGTGAGAGTTTCACACTCAAAAAATAAAAAATAAAATTAGGTTGAGATAGATTTAGATAGAGAGCTACAACTCTTGCTAGTCAGAGGTGTCAATTATCCTGTGGAATTATTCGAGGTGCACGAAAGTTGATCATCAAAAAATAATAAAAAAAAAAGTTTGAAATTGAGGTGTAGTGTAAGATTTATTCATTAATGAGCTAAATTTGATTGAAAAGGATGTAATTTTTTTTCTTTTTTTTGTGGGAGAATACAGATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGAAAAATTTGGCAAATTTAGTATTGAACCAGAGTGTCCTAAGTTTGTGGCTTGGGCCAACAGGTGTATGCAAAAGGAGAATGTCTCTAAGTATCTTTCTGATCCTGACAAAATCTATGATTTTGTTGTAATGTTGAGACAGAGGATTGGCATTG</genome_strand>
        <mrna_strand>TGAAGTTGTCCTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCAATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGAAAAATTTGGCAAATTTAGTATTGAACCAGAGTGTCCTAAGTTTGTGGCTTGGGCCAACAGGTGTATGCAAAAGGAGAATGTCTCTAAGTATCTTTCTGATCCTGACAAAATCTATGATTTTGTTGTAATGTTGAGACAGAGGATTGGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235562" ref_strand="+" ref_description="SGN-E235562 [cLED-11-F8]">
      <seq>tgatgaagttgtccttctgggaacttatgtgagtatgtttgctgtgagggtaaaaattgccctggctgaaaaggggatccaatatgagtacaaagaagagaacttggtgaacaaaagtcctttactcttacaaatgaatccaattcacaagaaaatcccagtgttgatccataatggaaaaccaatatgtgagtcactcataattgttgagtacatagatgaagtttggaatgacaaatcacctttgttgcctagtgatccttataagagagctcaagctaggttttgggctgattatgttgacaaaaagatttatgatggtggaaagaaaatttggacaacaaaagtggaggaacaagaagcagctaataaagaattcattgagtgtttgaaggtgttggaaggggaattgggagacaagccatacttcgatggagaaagttttggttttgtggatttggcactcattccttactatagctggttccctgcttatgaaaaatttggcaaatttagtattgaaccagagtgtcctaagtttgtggcttgggccaacaggtgtatgcaaaaggagaatgtctctaagtatctttctgatcctgacaaaatctatgattttgttgtaatgttgagacagaggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="1599" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1299" g_stop="990" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="989" i_stop="390" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="389" g_stop="57" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="643" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E235562" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1299" e_stop="990"/>
          <exon e_start="389" e_stop="57"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAAGTGTCCNTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAGGTATGTAACTATCATAAAATATGTTTGTCATCTTAGTACATTTAGTTTAGATCCTATAATTTGTAAGAGCATGTTTTACTCATGGGTGTGACTTTTATGCTAACATAAATTTAGGTTTAGATACACCCTACCCTAGGGAGTAGCCTAGTGGCCAATCAACCGTTGTTGAAAATTCTAAGGTCTGATGTTCAAAATTCAGCTGAAACAAAAATACCAGTTGATTCTTTCATATGTTCTAGCCTGGATGTACAGCGTTAACTAGTATGTCTTGCTGGTGGGAGGTAGAAGGTATCATGTCTCTTGTTGTGGTGGGAGGTGGAAGGTATTCCGTGGAATTAGTCGAAGTAAGTGAGAGTTTCACACTCAAAAAATAAAAAATAAAATTAGGTTGAGATAGATTTAGATAGAGAGCTACAACTCTTGCTAGTCAGAGGTGTCAATTATCCTGTGGAATTATTCGAGGTGCACGAAAGTTGATCATCAAAAAATAATAAAAAAAAAAGTTTGAAATTGAGGTGTAGTGTAAGATTTATTCATTAATGAGCTAAATTTGATTGAAAAGGATGTAATTTTTTTTCTTTTTTTTGTGGGAGAATACAGATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGAAAAATTTGGCAAATTTAGTATTGAACCAGAGTGTCCTAAGTTTGTGGCTTGGGCCAACAGGTGTATGCAAAAGGAGAATGTCTCTAAGTATCTTTCTGATCCTGACAAAATCTATGATTTTGTTGTAATGTTGAGACAGAGGATT</genome_strand>
        <mrna_strand>TGATGAAGTTGTCCTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCAATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGAAAAATTTGGCAAATTTAGTATTGAACCAGAGTGTCCTAAGTTTGTGGCTTGGGCCAACAGGTGTATGCAAAAGGAGAATGTCTCTAAGTATCTTTCTGATCCTGACAAAATCTATGATTTTGTTGTAATGTTGAGACAGAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322684" ref_strand="+" ref_description="SGN-E322684 [cTOB-26-F13]">
      <seq>ttatttcttgcaattctacttactacaaattttcagcaaaaaaatggctgatgaagttgtccttctgggaacttatgtgagtatgtttgctgtgagggtaaaaattgccctggctgaaaaggggatccaatatgagtacaaagaagagaacttggtgaacaaaagtcctttactcttacaaatgaatccaattcacaagaaaatcccagtgttgatccataatggaaaaccaatatgtgagtcactcataattgttgagtacatagatgaagtttggaatgacaaatcacctttgttgcctagtgatccttataagagagctcaagctaggttttgggctgattatgttgacaaaaagatttatgatggtggaaagaaaatttggacaacaaaagtggaggaacaagaagcagctaataaagaattcattgagtgtttgaaggtgttggaaggggaattgggagacaagccatacttcgatggagaaagttttggttttgtggatttggcactcattccttactatagctggttccctgcttatgaaaatttggcaaatttagtattgaaccagagtgtcctaagtttgtggcttgggcccacaggtgtatgcaaaaggagaatgtctctaagtatctttctgatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="1647" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1347" g_stop="990" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="989" i_stop="390" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="389" g_stop="98" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="649" r_length="291" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E322684" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1347" e_stop="990"/>
          <exon e_start="389" e_stop="98"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCTGCCAAATCTACTTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTGTCCNTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAGGTATGTAACTATCATAAAATATGTTTGTCATCTTAGTACATTTAGTTTAGATCCTATAATTTGTAAGAGCATGTTTTACTCATGGGTGTGACTTTTATGCTAACATAAATTTAGGTTTAGATACACCCTACCCTAGGGAGTAGCCTAGTGGCCAATCAACCGTTGTTGAAAATTCTAAGGTCTGATGTTCAAAATTCAGCTGAAACAAAAATACCAGTTGATTCTTTCATATGTTCTAGCCTGGATGTACAGCGTTAACTAGTATGTCTTGCTGGTGGGAGGTAGAAGGTATCATGTCTCTTGTTGTGGTGGGAGGTGGAAGGTATTCCGTGGAATTAGTCGAAGTAAGTGAGAGTTTCACACTCAAAAAATAAAAAATAAAATTAGGTTGAGATAGATTTAGATAGAGAGCTACAACTCTTGCTAGTCAGAGGTGTCAATTATCCTGTGGAATTATTCGAGGTGCACGAAAGTTGATCATCAAAAAATAATAAAAAAAAAAGTTTGAAATTGAGGTGTAGTGTAAGATTTATTCATTAATGAGCTAAATTTGATTGAAAAGGATGTAATTTTTTTTCTTTTTTTTGTGGGAGAATACAGATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGAAAAATTTGGCAAATTTAGTATTGAACCAGAGTGTCCTAAGTTTGTGGCTTGGGCCAACAGGTGTATGCAAAAGGAGAATGTCTCTAAGTATCTTTCTGATCCTG</genome_strand>
        <mrna_strand>TTATTTCTTGCAATTCTACTTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTTGTCCTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCAATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATG-AAAATTTGGCAAATTTAGTATTGAACCAGAGTGTCCTAAGTTTGTGGCTTGGGCCCACAGGTGTATGCAAAAGGAGAATGTCTCTAAGTATCTTTCTGATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328724" ref_strand="+" ref_description="SGN-E328724 [cTOC-23-O14]">
      <seq>tgcaattctacttactacaaattttcagcaaaaaaatggctgttgaagttgtccttctgggaacttatgtgagtatgtttgctgtgagggtaaaaattgccctggctgaaaaggggatccaatatgagtacaaagaagagaacttggtgaacaaaagtcctttactcttacaaatgaatccaattcacaagaaaatcccagtgttgatccataatggaaaaccaatatgtgagtcactcataattgttgagtacatagatgaagtttggaatgacaaatcacctttgttgcctagtgatccttataagagagctcaagctaggttttgggctgattatgttgacaaaaagatttatgatggtggaaagaaaatttggacaacaaaagtggaggaacaagaagcagctaataaagaattcattgagtgtttgaaggtgttggaaggggaattgggagacaagccatacttcgatggagaaagttttggttttgtggatttggcactcattccttactatagctgggtccctgcttatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="1640" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1340" g_stop="990" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="989" i_stop="390" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="389" g_stop="198" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="542" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E328724" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1340" e_stop="990"/>
          <exon e_start="389" e_stop="198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAAATCTACTTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTGTCCNTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAGGTATGTAACTATCATAAAATATGTTTGTCATCTTAGTACATTTAGTTTAGATCCTATAATTTGTAAGAGCATGTTTTACTCATGGGTGTGACTTTTATGCTAACATAAATTTAGGTTTAGATACACCCTACCCTAGGGAGTAGCCTAGTGGCCAATCAACCGTTGTTGAAAATTCTAAGGTCTGATGTTCAAAATTCAGCTGAAACAAAAATACCAGTTGATTCTTTCATATGTTCTAGCCTGGATGTACAGCGTTAACTAGTATGTCTTGCTGGTGGGAGGTAGAAGGTATCATGTCTCTTGTTGTGGTGGGAGGTGGAAGGTATTCCGTGGAATTAGTCGAAGTAAGTGAGAGTTTCACACTCAAAAAATAAAAAATAAAATTAGGTTGAGATAGATTTAGATAGAGAGCTACAACTCTTGCTAGTCAGAGGTGTCAATTATCCTGTGGAATTATTCGAGGTGCACGAAAGTTGATCATCAAAAAATAATAAAAAAAAAAGTTTGAAATTGAGGTGTAGTGTAAGATTTATTCATTAATGAGCTAAATTTGATTGAAAAGGATGTAATTTTTTTTCTTTTTTTTGTGGGAGAATACAGATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGAAAAA</genome_strand>
        <mrna_strand>TG-CAATTCTACTTACTACAAATTTTCAGCAAAAAAATGGCTGTTGAAGTTGTCCTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCAATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGGTCCCTGCTTATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273544" ref_strand="+" ref_description="SGN-E273544 [cLEN-6-D7]">
      <seq>tttcttgcaattctacttactacaaattttcagcaaaaaaatggctgatgaagttgtccttctgggaacttatgtgagtatgtttgctgtgagggtaaaaattgccctggctgaaaaggggatccaatatgagtacaaagaagagaacttggtgaacaaaagtcctttactcttacaaatgaatccaattcacaagaaaatcccagtgttgatccataatggaaaaccaatatgtgagtcactcataattgttgagtacatagatgaagtttggaatgacaaatcacctttgttgcctagtgatccttataagagagctcaagctaggttttgggctgattatgttgacaaaaagatttatgatggtggaaagaaaatttggacaacaaaagtggaggaacaagaagcagctaataaagaattcattgacgtgtttgaaggtgttggaaggggaattgggagacaagccatacttcgatggagaaagttctggttttgtggatttggcactcattccttactatagctggttccctgcttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="1644" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1344" g_stop="990" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="989" i_stop="390" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="389" g_stop="202" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="544" r_length="189" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E273544" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1344" e_stop="990"/>
          <exon e_start="389" e_stop="202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGCCAAATCTACTTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTGTCCNTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAGGTATGTAACTATCATAAAATATGTTTGTCATCTTAGTACATTTAGTTTAGATCCTATAATTTGTAAGAGCATGTTTTACTCATGGGTGTGACTTTTATGCTAACATAAATTTAGGTTTAGATACACCCTACCCTAGGGAGTAGCCTAGTGGCCAATCAACCGTTGTTGAAAATTCTAAGGTCTGATGTTCAAAATTCAGCTGAAACAAAAATACCAGTTGATTCTTTCATATGTTCTAGCCTGGATGTACAGCGTTAACTAGTATGTCTTGCTGGTGGGAGGTAGAAGGTATCATGTCTCTTGTTGTGGTGGGAGGTGGAAGGTATTCCGTGGAATTAGTCGAAGTAAGTGAGAGTTTCACACTCAAAAAATAAAAAATAAAATTAGGTTGAGATAGATTTAGATAGAGAGCTACAACTCTTGCTAGTCAGAGGTGTCAATTATCCTGTGGAATTATTCGAGGTGCACGAAAGTTGATCATCAAAAAATAATAAAAAAAAAAGTTTGAAATTGAGGTGTAGTGTAAGATTTATTCATTAATGAGCTAAATTTGATTGAAAAGGATGTAATTTTTTTTCTTTTTTTTGTGGGAGAATACAGATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGA-GTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGA</genome_strand>
        <mrna_strand>TTTCTTGCAATTCTACTTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTTGTCCTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCAATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGACGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTCTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697423" ref_strand="+" ref_description="SGN-E697423 [FA02DD11]">
      <seq>cccttattttcagcaaaaaaatggctgatgaagttgtccttctgggaacttatgtgagtatgtttgctgtgagggtaaaaattgccctggctgaaaaggggatccaatatgagtacaaagaagagaacttggtgaacaaaagtcctttactcttacaaatgaatccaattcacaagaaaatcccagtgttgatccataatggaaaaccaatatgtgagtcactcataattgttgagtacatagatgaagtttggaatgacaaatcacctttgttgcctagtgatccttataagagagctcaagctaggttttgggctgattatgttgacaaaaagatttatgatggtggaaagaaaatttggacaaccaaagtggaggaacaagaagccagctaataaacaattcattgagtgcttgaaggtgttggaaggggaattgggagacaagccatacttcgatggagaaagctttggttctgtggatttggcactcattccttactatagctggttccctgcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="1619" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1324" g_stop="990" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="989" i_stop="390" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="389" g_stop="203" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="523" r_length="188" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E697423" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1324" e_stop="990"/>
          <exon e_start="389" e_stop="203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAATTTTCAGCAAAAAAATGGCTGATGAAGTGTCCNTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAGGTATGTAACTATCATAAAATATGTTTGTCATCTTAGTACATTTAGTTTAGATCCTATAATTTGTAAGAGCATGTTTTACTCATGGGTGTGACTTTTATGCTAACATAAATTTAGGTTTAGATACACCCTACCCTAGGGAGTAGCCTAGTGGCCAATCAACCGTTGTTGAAAATTCTAAGGTCTGATGTTCAAAATTCAGCTGAAACAAAAATACCAGTTGATTCTTTCATATGTTCTAGCCTGGATGTACAGCGTTAACTAGTATGTCTTGCTGGTGGGAGGTAGAAGGTATCATGTCTCTTGTTGTGGTGGGAGGTGGAAGGTATTCCGTGGAATTAGTCGAAGTAAGTGAGAGTTTCACACTCAAAAAATAAAAAATAAAATTAGGTTGAGATAGATTTAGATAGAGAGCTACAACTCTTGCTAGTCAGAGGTGTCAATTATCCTGTGGAATTATTCGAGGTGCACGAAAGTTGATCATCAAAAAATAATAAAAAAAAAAGTTTGAAATTGAGGTGTAGTGTAAGATTTATTCATTAATGAGCTAAATTTGATTGAAAAGGATGTAATTTTTTTTCTTTTTTTTGTGGGAGAATACAGATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAG-CAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATG</genome_strand>
        <mrna_strand>CCCTTATTTTCAGCAAAAAAATGGCTGATGAAGTTGTCCTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCAATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATGGTGGAAAGAAAATTTGGACAACCAAAGTGGAGGAACAAGAAGCCAGCTAATAAACAATTCATTGAGTGCTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGCTTTGGTTCTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294792" ref_strand="+" ref_description="SGN-E294792 [cLET-17-L23]">
      <seq>ttactacaaattttcagcaaaaaaatggctgatgaagttgtccttctgggaacttatgtgagtatgtttgctgtgagggtaaaaattgccctggctgaaaaggggatccaatatgagtacaaagaagagaacttggtgaacaaaagtcctttactcttacaaatgaatccaattcacaagaaaatcccagtgttgatccataatggaaaaccaatatgtgagtcactcataattgttgagtacatagatgaagtttggaatgacaaatcacctttgttgcctagtgatccttataagagagctcaagctaggttttgggctgattatgttgacaaaaagatttatgatggtggaaagaaaatttggacaacaaaagtggaggaacaagaagcagctaataaagaattcattgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="1628" stop="13"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1328" g_stop="990" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="989" i_stop="390" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="389" g_stop="313" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="416" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E294792" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1328" e_stop="990"/>
          <exon e_start="389" e_stop="313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTGTCCNTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAGGTATGTAACTATCATAAAATATGTTTGTCATCTTAGTACATTTAGTTTAGATCCTATAATTTGTAAGAGCATGTTTTACTCATGGGTGTGACTTTTATGCTAACATAAATTTAGGTTTAGATACACCCTACCCTAGGGAGTAGCCTAGTGGCCAATCAACCGTTGTTGAAAATTCTAAGGTCTGATGTTCAAAATTCAGCTGAAACAAAAATACCAGTTGATTCTTTCATATGTTCTAGCCTGGATGTACAGCGTTAACTAGTATGTCTTGCTGGTGGGAGGTAGAAGGTATCATGTCTCTTGTTGTGGTGGGAGGTGGAAGGTATTCCGTGGAATTAGTCGAAGTAAGTGAGAGTTTCACACTCAAAAAATAAAAAATAAAATTAGGTTGAGATAGATTTAGATAGAGAGCTACAACTCTTGCTAGTCAGAGGTGTCAATTATCCTGTGGAATTATTCGAGGTGCACGAAAGTTGATCATCAAAAAATAATAAAAAAAAAAGTTTGAAATTGAGGTGTAGTGTAAGATTTATTCATTAATGAGCTAAATTTGATTGAAAAGGATGTAATTTTTTTTCTTTTTTTTGTGGGAGAATACAGATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTG</genome_strand>
        <mrna_strand>TTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTTGTCCTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCAATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323643" ref_strand="+" ref_description="SGN-E323643 [cTOC-2-P20]">
      <seq>ggaacttatgtgagtatgtttgctgtgagggtaaaaattgccctgcctgaaaaggggatccaatatgagtacctagaagagaacttggtgaacaaaagtcctttactcttacaaatgaatccaattcacaagaaaatcccagtgttgatccataatggaaaaccaatatgtgagtcactcataattgttgagtacatagatgaagtttggaatgacaaatcacctttgttgcctagtgatccttataagagagctcaagctaggttttgggctgattatgttgacaaaaagatttatgatgggggaaagaaaatttggacaacaaaagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="1580" stop="50"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1280" g_stop="990" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="989" i_stop="390" i_length="600">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="389" g_stop="350" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="331" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E323643" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1280" e_stop="990"/>
          <exon e_start="389" e_stop="350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAGGTATGTAACTATCATAAAATATGTTTGTCATCTTAGTACATTTAGTTTAGATCCTATAATTTGTAAGAGCATGTTTTACTCATGGGTGTGACTTTTATGCTAACATAAATTTAGGTTTAGATACACCCTACCCTAGGGAGTAGCCTAGTGGCCAATCAACCGTTGTTGAAAATTCTAAGGTCTGATGTTCAAAATTCAGCTGAAACAAAAATACCAGTTGATTCTTTCATATGTTCTAGCCTGGATGTACAGCGTTAACTAGTATGTCTTGCTGGTGGGAGGTAGAAGGTATCATGTCTCTTGTTGTGGTGGGAGGTGGAAGGTATTCCGTGGAATTAGTCGAAGTAAGTGAGAGTTTCACACTCAAAAAATAAAAAATAAAATTAGGTTGAGATAGATTTAGATAGAGAGCTACAACTCTTGCTAGTCAGAGGTGTCAATTATCCTGTGGAATTATTCGAGGTGCACGAAAGTTGATCATCAAAAAATAATAAAAAAAAAAGTTTGAAATTGAGGTGTAGTGTAAGATTTATTCATTAATGAGCTAAATTTGATTGAAAAGGATGTAATTTTTTTTCTTTTTTTTGTGGGAGAATACAGATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGG</genome_strand>
        <mrna_strand>GGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGCCTGAAAAGGGGATCCAATATGAGTACCTAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATGGGGGAAAGAAAATTTGGACAACAAAAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239951" ref_strand="+" ref_description="SGN-E239951 [cLED-29-D21]">
      <seq>ttatttcttgcaattctacttactacaaattttcagcaaaaaaatggctgatgaagttgtccttctgggaacttatgtgagtatgtttgctgtgagggtaaaaattgccctggctgaaaaggggatccaatatgagtacaaagaagagaacttggtgaacaaaagtcctttactcttacaaatgaatccaattcacaagaaaatcccagtgttgatccataatggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="1647" stop="819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1347" g_stop="1119" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E239951" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1347" e_stop="1119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCTGCCAAATCTACTTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTGTCCNTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAA</genome_strand>
        <mrna_strand>TTATTTCTTGCAATTCTACTTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTTGTCCTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCAATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702370" ref_strand="+" ref_description="SGN-E702370 [FA18CB05]">
      <seq>gaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtgtcttgttaaatgttggcttttgtgatgagaagtaattactttttttttatctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15435" stop="13239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15135" g_stop="14871" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13539" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="804" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E702370" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15135" e_stop="14871"/>
          <exon e_start="14077" e_stop="13539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAAATGTTGGCTTTTGTGATGAGAAGTAATTACTTTTTTTTTATCTAACA</genome_strand>
        <mrna_strand>GAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAAATGTTGGCTTTTGTGATGAGAAGTAATTACTTTTTTTTTATCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713032" ref_strand="+" ref_description="SGN-E713032 [FB06CB05]">
      <seq>gcaattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtgtcttgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15528" stop="13285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15228" g_stop="14871" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13580" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="856" r_length="498" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E713032" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15228" e_stop="14871"/>
          <exon e_start="14077" e_stop="13580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAAATGTTG</genome_strand>
        <mrna_strand>GCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719484" ref_strand="+" ref_description="SGN-E719484 [FC08AA08]">
      <seq>gggcgattggcggccaatcggccgaattgaaatcaatactttggccattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtgtcttgttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15542" stop="13285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15243" g_stop="14871" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="401" r_length="373" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13583" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="896" r_length="495" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E719484" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15243" e_stop="14871"/>
          <exon e_start="14077" e_stop="13583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAAATG</genome_strand>
        <mrna_strand>GAAATCAATACTTTGGCCATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746999" ref_strand="+" ref_description="SGN-E746999 [GI|27447205]">
      <seq>gaaatcaatactttggcaattttgagattttttttcttaattcatacaaaataaaatggctaatgatcaggtgattcagttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtgtcttgttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15542" stop="13285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15243" g_stop="14871" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13586" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="865" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="866" polyA_stop="886"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E746999" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15243" e_stop="14871"/>
          <exon e_start="14077" e_stop="13586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAA</genome_strand>
        <mrna_strand>GAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATCAGGTGATTCAGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714604" ref_strand="+" ref_description="SGN-E714604 [FB11DF08]">
      <seq>caattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtgtcttgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15527" stop="13285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15227" g_stop="14871" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13586" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="849" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="850" polyA_stop="860"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E714604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15227" e_stop="14871"/>
          <exon e_start="14077" e_stop="13586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAA</genome_strand>
        <mrna_strand>CAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373052" ref_strand="+" ref_description="SGN-E373052 [TUS-32-C3](-)">
      <seq>aaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataaggtagaatcttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15328" stop="13285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15028" g_stop="14871" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13586" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="650" r_length="492" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E373052" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15028" e_stop="14871"/>
          <exon e_start="14077" e_stop="13586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAA</genome_strand>
        <mrna_strand>AAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGGTAGAATCTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714819" ref_strand="+" ref_description="SGN-E714819 [FB12CB04]">
      <seq>gagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtgtcttgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="35356" stop="13285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14913" g_stop="14871" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13586" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="535" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="549"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E714819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14913" e_stop="14871"/>
          <exon e_start="14077" e_stop="13586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAA</genome_strand>
        <mrna_strand>GAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347497" ref_strand="+" ref_description="SGN-E347497 [cTOF-33-J22]">
      <seq>aacataagaatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtgtcttgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="14088" stop="13285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13788" g_stop="13586" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="205" polyA_stop="218"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E347497" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13788" e_stop="13586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATAAG-ATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAA</genome_strand>
        <mrna_strand>AACATAAGAATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715298" ref_strand="+" ref_description="SGN-E715298 [FB13DE10]">
      <seq>cgatgatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtgtcttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15384" stop="13287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15084" g_stop="14871" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13587" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="705" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E715298" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15084" e_stop="14871"/>
          <exon e_start="14077" e_stop="13587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTA</genome_strand>
        <mrna_strand>CGATGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713918" ref_strand="+" ref_description="SGN-E713918 [FB10AB03]">
      <seq>gaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtgtcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15345" stop="13288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15045" g_stop="14871" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13588" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="665" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E713918" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15045" e_stop="14871"/>
          <exon e_start="14077" e_stop="13588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTT</genome_strand>
        <mrna_strand>GAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734812" ref_strand="+" ref_description="SGN-E734812 [LB13CF05]">
      <seq>attttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15517" stop="13290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15217" g_stop="14871" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13590" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="835" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E734812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15217" e_stop="14871"/>
          <exon e_start="14077" e_stop="13590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTG</genome_strand>
        <mrna_strand>ATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708105" ref_strand="+" ref_description="SGN-E708105 [FA34DE02]">
      <seq>ccttttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtgtctttgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15516" stop="13285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15218" g_stop="14871" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13591" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="835" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E708105" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15218" e_stop="14871"/>
          <exon e_start="14077" e_stop="13591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTT</genome_strand>
        <mrna_strand>CCTTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716118" ref_strand="+" ref_description="SGN-E716118 [FB16AF10]">
      <seq>gattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagtaataaaggataagcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15518" stop="13295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15218" g_stop="14871" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13595" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="831" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E716118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15218" e_stop="14871"/>
          <exon e_start="14077" e_stop="13595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTG</genome_strand>
        <mrna_strand>GATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714133" ref_strand="+" ref_description="SGN-E714133 [FB10CD12]">
      <seq>caattttgagatttctttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagaattgaaaatgtttgttttggttatagtgtaagttctatttctaatagtaataaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15527" stop="13306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15227" g_stop="14871" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13606" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="832" r_length="474" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E714133" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15227" e_stop="14871"/>
          <exon e_start="14077" e_stop="13606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTGAGATTT-TTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTG-AAATGTTTG-TTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGG</genome_strand>
        <mrna_strand>CAATTTTGAGATTTCTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGAATTGAAAATGTTTGTTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294521" ref_strand="+" ref_description="SGN-E294521 [cLET-22-C6]">
      <seq>ttattactattagaaatagaacttacactataaccaaacaaacatttcaaatcttgaaacaacacaagataaaggcagaatgaagtgcctttcttcaatactactatgatatgcatatgtttatttattcaagtccaagcttttccctaagaatttttacaaactcaatgatcttatgttggtcaggcaaagttttagccacactgtccctttgcatgcacctcttggcccaagccacaagagtttgggcactcagcctcaatgctgaagttaccataaacctcataagcatgaaaccagcagtagaacccaatgagagcaatatccccaaaaccaaagttatctcctccataataaggcttctctccaagtgctccctccaacactttaaggatttctacgaaatctttcttacctgcctcttgttcgtctcccgttgctgtataaatcttgcttcctgtagcagaaaggggtaggggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="13309" stop="14377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13609" g_stop="14071" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E294521" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13609" e_stop="14071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTACTATTAGAAATAGAACTTACACTATAACCAAACAAACATTTCAAATCTTGAAACAACACAAGATAAAGGCAGAATGAAGTGCCTTTCTTCAATACTACTATGATATGCATATGTTTATTTATTCAAGTCCAAGCTTTTCCCTAAGAATTTTTACAAACTCAATGATCTTATGTTGGTCAGGCAAAGTTTTAGCCACACTGTCCCTTTGCATGCACCTCTTGGCCCAAGCCACAAG-GTTTGGGCACTCAGCCTCAATGCTGAAGTTACCATAAACCTCATAAGCATGAAACCAGCAGTAGAACCCAATGAGAGCAATATCCCCAAAACCAAAGTTATCTCCTCCATAATAAGGCTTCTCTCCAAGTGCTCCCTCCAACACTTTAAGGATTTCTACGAAATCTTTCTTACCTGCCTCTTGTTCGTCTCCCGTTGCTGTATAAATCTTGCTTCCTGTAGC</genome_strand>
        <mrna_strand>TTATTACTATTAGAAATAGAACTTACACTATAACCAAACAAACATTTCAAATCTTGAAACAACACAAGATAAAGGCAGAATGAAGTGCCTTTCTTCAATACTACTATGATATGCATATGTTTATTTATTCAAGTCCAAGCTTTTCCCTAAGAATTTTTACAAACTCAATGATCTTATGTTGGTCAGGCAAAGTTTTAGCCACACTGTCCCTTTGCATGCACCTCTTGGCCCAAGCCACAAGAGTTTGGGCACTCAGCCTCAATGCTGAAGTTACCATAAACCTCATAAGCATGAAACCAGCAGTAGAACCCAATGAGAGCAATATCCCCAAAACCAAAGTTATCTCCTCCATAATAAGGCTTCTCTCCAAGTGCTCCCTCCAACACTTTAAGGATTTCTACGAAATCTTTCTTACCTGCCTCTTGTTCGTCTCCCGTTGCTGTATAAATCTTGCTTCCTGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716747" ref_strand="+" ref_description="SGN-E716747 [FB17DF10]">
      <seq>tttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaagttctatttctaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15515" stop="13314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15215" g_stop="14871" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13614" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="809" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E716747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15215" e_stop="14871"/>
          <exon e_start="14077" e_stop="13614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGT</genome_strand>
        <mrna_strand>TTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711504" ref_strand="+" ref_description="SGN-E711504 [FB02AG05]">
      <seq>gagccgtttatttttcttaattcatacaaaataaaatggctaatgacgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaagtatgagtacggagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgcgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcgacgggagacgaactagaggcaggaaagaaagatttcgtataaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggttatagtgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15516" stop="13331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15223" g_stop="14871" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13631" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="801" r_length="447" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E711504" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15223" e_stop="14871"/>
          <exon e_start="14077" e_stop="13631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAA-TATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAA</genome_strand>
        <mrna_strand>GAGCCGTTTATTTTTCTTAATTCATACAAAATAAAATGGCTAATGACGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAAGTATGAGTACGGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCGACGGGAGACGAACTAGAGGCAGGAAAGAAAGATTTCGTATAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717643" ref_strand="+" ref_description="SGN-E717643 [FC02BC08]">
      <seq>gggcgattggcggccaatcggccgaattgacacccctatatatacttcgtgtatgtatatacaacaagcaaatcaatactttggcaattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcaaatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15588" stop="13340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15280" g_stop="14871" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="441" r_length="410" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13640" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="879" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E717643" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15280" e_stop="14871"/>
          <exon e_start="14077" e_stop="13640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTATATATACTTCGTGTATGTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTT</genome_strand>
        <mrna_strand>ACCCCTATATATACTTCGTGTATGTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAAATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724507" ref_strand="+" ref_description="SGN-E724507 [FC24BC04]">
      <seq>ggcgattggcggccaaatcggccgaattgaaatcaatactttgccaattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtaaaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15542" stop="13340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15243" g_stop="14871" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="401" r_length="373" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13640" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="839" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E724507" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15243" e_stop="14871"/>
          <exon e_start="14077" e_stop="13640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTT</genome_strand>
        <mrna_strand>GAAATCAATACTTTGCCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAAAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722728" ref_strand="+" ref_description="SGN-E722728 [FC18AE08]">
      <seq>gggcgaattggcggccaatcggccgaattggcaaatcaatactttggcaattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15544" stop="13342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15243" g_stop="14871" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="404" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13642" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="840" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E722728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15243" e_stop="14871"/>
          <exon e_start="14077" e_stop="13642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGG</genome_strand>
        <mrna_strand>CAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702316" ref_strand="+" ref_description="SGN-E702316 [FA18BE10]">
      <seq>ccaacttaaggcatctacacccctatatatacttcgtgtatgtatatacaacaagcaaatcaatactttggcaattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttgaaatgtttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15598" stop="13344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15298" g_stop="14871" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13644" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="862" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E702316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15298" e_stop="14871"/>
          <exon e_start="14077" e_stop="13644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTAAGGCATCTACACCCCTATATATACTTCGTGTATGTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTT</genome_strand>
        <mrna_strand>CCAACTTAAGGCATCTACACCCCTATATATACTTCGTGTATGTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260605" ref_strand="+" ref_description="SGN-E260605 [cLEG-54-P10]">
      <seq>tttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttatcttgtgttgtttcaagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15513" stop="13356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15213" g_stop="14871" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13656" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="765" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E260605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15213" e_stop="14871"/>
          <exon e_start="14077" e_stop="13656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTG</genome_strand>
        <mrna_strand>TTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716503" ref_strand="+" ref_description="SGN-E716503 [FB17AH09]">
      <seq>ctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaaaggcacttcattctgcctttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15415" stop="13378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15115" g_stop="14871" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13679" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="644" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="645" polyA_stop="659"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E716503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15115" e_stop="14871"/>
          <exon e_start="14077" e_stop="13679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTT</genome_strand>
        <mrna_strand>CTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294675" ref_strand="+" ref_description="SGN-E294675 [cLET-22-L15]">
      <seq>tctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattgaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="35370" stop="13399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14927" g_stop="14871" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13699" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="436" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E294675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14927" e_stop="14871"/>
          <exon e_start="14077" e_stop="13699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAA</genome_strand>
        <mrna_strand>TCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258794" ref_strand="+" ref_description="SGN-E258794 [cLEG-50-H19]">
      <seq>gattgcacttgctgagaaagagataaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttanggaaaagcttggacttgaataaataaacatatgcatatcatagtagtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15426" stop="13403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15126" g_stop="14871" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13703" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="630" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E258794" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15126" e_stop="14871"/>
          <exon e_start="14077" e_stop="13703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGA</genome_strand>
        <mrna_strand>GATTGCACTTGCTGAGAAAGAGA-TAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTANGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717410" ref_strand="+" ref_description="SGN-E717410 [FC01AF02]">
      <seq>cggccgaattgatttttatttttttatattttgatgttaaagttctggcttggccaacttaaggcatctacacccctatatatacttcgtgtatgtatatacaacaagcaaatcaatactttggcaattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgggccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15648" stop="13440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15351" g_stop="14871" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13740" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="819" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E717410" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15351" e_stop="14871"/>
          <exon e_start="14077" e_stop="13740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTAACCTATTTTTATTTTTTTATATTTTGATGTTAAAGTTCTGGCTTGGCCAACTTAAGGCATCTACACCCCTATATATACTTCGTGTATGTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACT</genome_strand>
        <mrna_strand>CGGCCGAATTGATTTTTATTTTTTTATATTTTGATGTTAAAGTTCTGGCTTGGCCAACTTAAGGCATCTACACCCCTATATATACTTCGTGTATGTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373053" ref_strand="+" ref_description="SGN-E373053 [TUS-32-C3]">
      <seq>tttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgataaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgtgccaagaggtgcatgcaaagggacagtgtggctaaaactttgcctgaccaacataagatcattgagtttgtaaaaattcttagggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15523" stop="13449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15223" g_stop="14871" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13749" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="682" r_length="329" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E373053" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15223" e_stop="14871"/>
          <exon e_start="14077" e_stop="13749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAA</genome_strand>
        <mrna_strand>TTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGATAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGTGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721676" ref_strand="+" ref_description="SGN-E721676 [FC14DD07]">
      <seq>gatgaggtgattctgttggatttttggcctaccatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacaaggatttgaggaacaaaagtcctctgcttttgcaaatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaaaaaagatttcgtaaaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggcttgagccaagaggtgcatgcaaagggacagtgtggttaaaaactttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15479" stop="13494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15179" g_stop="14871" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13794" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="594" r_length="285" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E721676" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15179" e_stop="14871"/>
          <exon e_start="14077" e_stop="13794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCT-AAAACTTTGCC</genome_strand>
        <mrna_strand>GATGAGGTGATTCTGTTGGATTTTTGGCCTACCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACAAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAAATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAAAAAGATTTCGTAAAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGAGCCAAGAGGTGCATGCAAAGGGACAGTGTGGTTAAAAACTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292373" ref_strand="+" ref_description="SGN-E292373 [cLET-1-O24]">
      <seq>tttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctgagtgcccaaaccttgtggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15523" stop="13541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15223" g_stop="14871" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13841" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="590" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E292373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15223" e_stop="14871"/>
          <exon e_start="14077" e_stop="13841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCT</genome_strand>
        <mrna_strand>TTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274612" ref_strand="+" ref_description="SGN-E274612 [cLEN-11-H17]">
      <seq>aattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcattgaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15526" stop="13561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15226" g_stop="14871" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13861" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="573" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E274612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15226" e_stop="14871"/>
          <exon e_start="14077" e_stop="13861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTG</genome_strand>
        <mrna_strand>AATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214921" ref_strand="+" ref_description="SGN-E214921 [cLEC-78-F7]">
      <seq>ttttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatgaggtttatggtaacttcagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15524" stop="13568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15224" g_stop="14871" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13868" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="564" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E214921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15224" e_stop="14871"/>
          <exon e_start="14077" e_stop="13868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATT</genome_strand>
        <mrna_strand>TTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725542" ref_strand="+" ref_description="SGN-E725542 [LA04AA02]">
      <seq>gactttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctgggttcatgcttatgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15518" stop="13588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15218" g_stop="14871" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13888" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="538" r_length="190" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E725542" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15218" e_stop="14871"/>
          <exon e_start="14077" e_stop="13888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGG</genome_strand>
        <mrna_strand>GACTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGGTTCATGCTTATGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275333" ref_strand="+" ref_description="SGN-E275333 [cLEN-9-P18]">
      <seq>tttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttttggggatattgctctcattgggttctactgctggtttcatgcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15515" stop="13591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15215" g_stop="14871" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13891" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="532" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E275333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15215" e_stop="14871"/>
          <exon e_start="14077" e_stop="13891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATG</genome_strand>
        <mrna_strand>TTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289204" ref_strand="+" ref_description="SGN-E289204 [cLES-18-P18]">
      <seq>tttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctaacatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgtttttgcagatgaatcctattcacaagagaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagctgagtatattgatgaagtgtggaaggataaagcccctttgctaccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcatcgggagacaaacaagaggcgggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattatggaggagataactttggttatggggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15515" stop="13630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15215" g_stop="14871" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13930" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="493" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E289204" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15215" e_stop="14871"/>
          <exon e_start="14077" e_stop="13930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATA</genome_strand>
        <mrna_strand>TTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAACATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGTTTTTGCAGATGAATCCTATTCACAAGAGAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGCTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTACCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCATCGGGAGACAAACAAGAGGCGGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTATGGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274966" ref_strand="+" ref_description="SGN-E274966 [cLEN-16-C19]">
      <seq>atgtatggtatgaggtttaggattgcacttgctgagaaagagattgggtatgattacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccgtaaagtgttggagggagcacttggagagaagccttattatggaggagataactttgggtttgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15446" stop="13632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15146" g_stop="14871" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13932" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="422" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E274966" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15146" e_stop="14871"/>
          <exon e_start="14077" e_stop="13932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGA</genome_strand>
        <mrna_strand>ATGTATGGTATGAGGTTTAGGATTGCACTTGCTGAGAAAGAGATTGGGTATGATTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCGTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGGTTTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207572" ref_strand="+" ref_description="SGN-E207572 [cLEC-32-G7]">
      <seq>attcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttggagagaagccttattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15504" stop="13658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15204" g_stop="14871" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13958" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="454" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E207572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15204" e_stop="14871"/>
          <exon e_start="14077" e_stop="13958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTAT</genome_strand>
        <mrna_strand>ATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202971" ref_strand="+" ref_description="SGN-E202971 [cLEB-1-A12]">
      <seq>gcacgagtttcttaattcattcaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcactagctaggttttgggctgattacattgacaagaagttatatgctacaggaagcaagatttatacagcaacgggagacgaacaagaggcaggtaagaaagatttcgtagaaatccttaaagtgttggagggagcacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15511" stop="13674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15218" g_stop="14871" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14077" g_stop="13974" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="452" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E202971" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15218" e_stop="14871"/>
          <exon e_start="14077" e_stop="13974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAGGTAAATTCATAGCCCTTTCCCCTTTTCATTTTAGTATTTATTAGCCAATCTAAACTAATTTGGGATTGAAGCATTTTTCTGCTGTGTTTGTGTTGTTACAGTGGGTTAGAGTTCCACCTCGATTTGAATAGATTAGTTGTTTACTTATATGAACATAGATAATTCTCTTGCCGTGAACTAACTTTTGAAGTTGACTGAGTTAGACATATGTGTTACGTCTTTACATGATTTTAGAGTCAGATTCATTTTTGTTTGTGCTTCTAATTAATTTGAACTCATGTTGAATCAAGACATGAAGGGATGTAAAAGTGGGTTAGAGTCGCACATTAGTTGGAGAATGAACTTTCCTAATTATGAGCTAACTTTTAAGATTGAGTAAGGTTTAAAGTTTCATATAATATATGATATCAGAGTCAGATTCATTTCTATTTGAATTTCTGTCCCAAGAACTAGTTGGGCCTTGATGTGAAGAGTGTGTTAAGAGCCCCAAATTGTGTCGTTTATATAATTTTAGTTAATCATCACTTCACAAGCTAGACAACCCCCACCCCCCTTTCCGCGCTCTAGATGCTAAGTCGTGGTGGTGTTAGAGGTTAAATTAGTTGAAGAAATGAAATATTGTCTTGGTTAATCCTATTCCCCACTTTGTAAACCAGGACCTCCTACTCCAGATGCTCAGTCTTAGGCGTGAGGGGTTCAACATTAGTTGAAGAAATAGAATACTGTCTCAGTATAAGTTCATGTTTTGTGGCAATAAGTTTTGACCGTTTTCTTGTGTTTGTTGAAATTTCAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGG</genome_strand>
        <mrna_strand>GCACGAGTTTCTTAATTCATTCAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACTAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257922" ref_strand="+" ref_description="SGN-E257922 [cLEG-48-G1]">
      <seq>aattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15526" stop="14576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15226" g_stop="14876" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E257922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15226" e_stop="14876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACA</genome_strand>
        <mrna_strand>AATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274990" ref_strand="+" ref_description="SGN-E274990 [cLEN-16-C20]">
      <seq>ttctggctttttcaacttaaggcatgtacacccctatatatactttgtgtctcgcctatacaacaagcaaatcaatactttggcaattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctaccatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatacctgttttgattcataatggcaaaccaattggtgagtctatcattggagttgagtatattgatgaagtgtggaaggataaagcccctttgctcccttctgatccttatgagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15597" stop="14610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15309" g_stop="14910" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E274990" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15309" e_stop="14910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGCTTGGCCAACTTAAGGCATCTACACCCCTATATATACTTCGTGTAT-GTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGA</genome_strand>
        <mrna_strand>TTCTGGCTTTTTCAACTTAAGGCATGTACACCCCTATATATACTTTGTGTCTCGCCTATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTACCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATACCTGTTTTGATTCATAATGGCAAACCAATTGGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698058" ref_strand="+" ref_description="SGN-E698058 [FA05AE07]">
      <seq>tcatttatagggcttggncaacttaaggcatctacacccctatatatacttcgtgtatgtatatacaacaagcaaatcaatactttggcaattttgagattttttttcttaattcatacaaaataaaatggctaatgatgaggtgattctgttggatttttggcctagcatgtatggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaacaaaatccctgttttgattcataatggcaaaccaatttgtgagcctatcattggagttgagtatattgatgaagtgcgcaaggataaagcccctttgctcccttctgatccttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="15614" stop="14615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15309" g_stop="14915" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="401" r_length="395" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E698058" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15309" e_stop="14915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGCTTGGCCAACTTAAGGCATCTACACCCCTATATATACTTCGTGTATGTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATG</genome_strand>
        <mrna_strand>ATAGGGCTTGGNCAACTTAAGGCATCTACACCCCTATATATACTTCGTGTATGTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAACAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGCCTATCATTGGAGTTGAGTATATTGATGAAGTGCGCAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370486" ref_strand="-" ref_description="SGN-E370486 [TUS-29-E7]">
      <seq>tcaatgagcttcctttagcttttgcttgccctttatactactttgttagtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactcttggatctgttttcttgagtcttgtctattgtatgattctgggattttcgaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="28969" stop="8315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28656" g_stop="28307" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="396" r_length="350" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28306" i_stop="25832" i_length="2475">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25831" g_stop="25790" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="432" r_length="36" r_score="0.619"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25789" i_stop="22402" i_length="3388">
            <donor d_prob="0.999" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22401" g_stop="22387" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="447" r_length="15" r_score="0.800"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22386" i_stop="18930" i_length="3457">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18929" g_stop="18920" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="457" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18919" i_stop="17346" i_length="1574">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17345" g_stop="17332" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="471" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17331" i_stop="17272" i_length="60">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17271" g_stop="17170" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="573" r_length="102" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E370486" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370486" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28656" e_stop="28307"/>
          <exon e_start="25831" e_stop="25790"/>
          <exon e_start="22401" e_stop="22387"/>
          <exon e_start="18929" e_stop="18920"/>
          <exon e_start="17345" e_stop="17332"/>
          <exon e_start="17271" e_stop="17170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATTTTACCCTTTCCTAAATTTTATTTGTACGAAATGTTTTCTATATCGAACCACATTTTCCCCTTTAATACTCCTGTTCACATTTCTAAGGTTTCAAAATATAAGTTGAGCCATGCACAAATATATTCCATCTAAGGATTAAAATTAACCTAGCAAATCAGAGAGTATTTTGATTAAAATTAGTGCAAAATATTATTGATAATGTTTAATAACAAATAAGTAATATAAAGCTAATAAAAATAATTGCAAGTAAAATAACTTTCTTAAAAATGAATTTCTTCTTAATCACATCCAACAAACTGCAAGAAAATAAGTCGATTTATGCAAAATCGTCACTTATAATTTTTTCATGTTTTAAAAGTTGTACAACTATAGTCCTTGGGACCAACGAAGTACAAAATGTCTGTCTAACTTTTATAAAATTTTATATCGCGATCTAAATTATCATCATAAATTATTTAAATTTATTTTTAAAAAAATCATTTATCATAAAATAATAATTTACTAAATAATTGTCGCTATCGGCCCATTTACGAATCGTAAGGGCCCAATGATTAAATCTTGATATTTAGTGGTTGGCCCAATGATCTGGAGCCCATAGGGGGAGGGACATACAACGTCACATGCCTTTCATGTATATTCCTATAGCCAACATTATGTCATGTTGAGGTTATAATGCAAAGCCATACAAGTAGGCACATGTATTTGCAACAAATAAAATGTTATTTTGGGTTGGGGTGGGGAAGATAGAGATATAATGAAACTTGGAGTGATTATATACACATACATAGACATTTTAAAATAATGACGGTCGAGATAGAAATTTCACTGTGATATGATGTTCTTATAAAAGAGGATTCACACCATGTGTGGCTCTATCAATAATGAGCTTGCTTGGTATGAGGAATAAGAGATAACTGATCTCAAGATTGATTCCGAAATGAGTTTATTCGATATTTAACTGAGATAAAACCACTAAATAATTATCTCAAGATTGTAATGTTATTTTTTATGAAATCCATATTAAAATTGGAATATTCAATATAACGTATTCCCTAGTCAAATGAATTGTAAGAGTTTGGATACATACTAAATTGGAACCTACTAAATATACCCTAAGATTTAACCTTTGATAAGTTCTTTTCTTACCTTATTCACTTGTAAACTCTCGAATTGAAATCATACTAAATGTAGCAAATATCAGAAATATTGGAGGTTTGAATAATTTAGATTATGTATTTTTTTGTTTTATATTATTTAGCTCGTATTGACTTAACTCATTTCTTTAAAATGCTATTTATTGGGAGTGTATTACTAAATTAACTTTATTAATAATACTTTGAAATTCTAAAATTTACTATTACTATAATTATTTAATACTAAGAATAGAACCAAATATTTCTTTATATAATAAAAATCTCTTTATTTATCGAATCAGACTAGCAAAAGAAAACATCTTTTAATAGAACTAGGGGTCAAGTAATATAAACAATAATAGTATATTAATAAATCTAATAAATATTTTTTTTAAAAATTAATTCTTCAATATAAGTAACTCCTTTTTTAATATATCTAAACCCATAAGTTTCAAAAATATTTCAATGCATACATATACTTTTAGTTAAGATTAAAAATATTTAAAACTCTTTATTTTTAAATATGTATTTGAATGTTATTAAAATAAATAAATAGAAACCACGACAATAATTTAAATATCAATTTTAGGATGAAAAATAAGGGGCCACAATTTAGACACTTTGACTGAAATCACATTCTAATACAGTAATTGAGACTTGAGAGGGAAACATACTGAGAAAAAAGGGAAAAAAAAGAGAGGGAAACATCAATTTTTCAAGTTATTATTTTTATTGCCTAACAAAAATATATAAAAAAAAAAATAGGACTGGCAAATTCAGGTCTCTATCACGTGCCAATGGCAGGTTGGTACATTACTCTAATTATTTAAAAATTTATTTAATAATTTGATGAATTATTAAGCATTAACTAAATAGGTAAGGGGCCATTATTATTGACAAATAATGAGTGAAAGACTATTTTATTTTAGTTTATTTTGTACTATTATTATTTTTTTTCTTATTATTCTATTCATTTTTATTACAGAGATTGAAGCTGATAGTAGTGATAGTGTAGGGCCCAGTGTTCACCACGTGGCAGACAGCATCGTATAAACTTTCCAACTGGGTCCCATGATATTGGGCCCCATCACGTGGGTCCATTAACCTGGCCACTTTCTATATCTGGGGTTCTTCTCTAATTAAAAATTATTGAAGTTTAAGTAGTTTTTTTTTTTGTTAATTTTATTTAATTAATGAGTTCTTAGTTATATTCTTAATGGGTTAGTGGCACAAAGTCGTCTGCCTAATGACACTGGCGTTGGGTCCGGTAACTTTCGACAATAATTTTTCAATTAATACAAAAATTATTTTACCTATCGCTTGATATAGTAAATTATATTAAAATTATTTTTTATTGATGATTTGATTTGATTTGTTAACTATCTTTAATCTTGCTTATATGTATATTTATATTCATTTTATTATTAATATCATTATTTATATCTATGTACTAATTATACAAAGTAACACCAAATAAAATGTATTAATTATATGTAAATCTAAAATCTTATCAAATAAAGGTTTGAATAATATCACGACTACTATATATATTCTTTTGTTTCAATTAATTTGATTTGTTTTTTCTTTTAAAAAATTACGTATAACAATGAGTTTTCTAAATCAAATATAGACTAATTTTGTTTCATTTGCTCAATAAAACTCGTACGAAACCTTTATATTAAATATAAAATTATTGGTACAATTAATTGTCAATTATAGATACTCTAATTAAGATTTTATCAAGTGTTCAATCAATGATGGGGGAATTAGGAACAACTCCTAATTATGGCACCGTTCTATAAGGGATATTGTTTAGACTTTAGAGTCTATGATATATAAGCAAAAGATTTCCAAGATTTATTTGGGGGAAATGTGAAAATAATTAGTACTCAACATAATTAAAATATTTTTATAATGACAAAGTTTGTATGAGAAGATATATGTATACCACCGCATAGATTTTATTTAGTTGTTATAAATCTAACTATGTAAAATTAGAAGAATCGAATACGAAAAAGTAAACATTAGTAACATTTTCTAGTGAAGTTAGGACCATATAACTTATGGATACTACTTAAACATAATTTTTTACTTTTTAGTGTCTTGAGATTTACTACATGCATGACATCAATAATAACTACTATAAATATTTTATTTTTATAAATATTTATTTACACTATATGTGAATATTATGTAATTAAGAGAGAATTTTACAAAAGTGAACTATCATAATGAATGTCATTATTGATATAAGTAGAGTGTTACTAAAGAAAATATATAATGTGAAAAAATTAATTATGGAAAAAAGGAGAAAAAATAATTTTATAAGAAACTACAGTTATAAAAAAAAATCGACTGTATTTAAATTAAAAAATTGTAATTATATTCTATGAAAAGACTTCCTACCATTTTTTTTAAAATTTTTCTACCATGCAACTGCAAACATATTTCACGTGTGATTAAGATAACCATATGCTTTTGGCCATTTGATTTAATTTGCACCAATAATTTTTTTTTACACTATTTCGAAAGTACTACTCCATAATTGGAAAAGATGTATCAATAATTTCATTTTTATTGTACTGATTTGTGATTAATGCCGAAAAATCAACTCTATTTTTTAAGTATGATTAGATATGTCTGCATGACTTAGAAGAGTTTCACACTATTTAGAACTAAATTTTATCGAAAAATGGTTGATAACTGATAATAATCGTAAATAGCAATATAAATTATCATGAGATAATTGAATTCTCTTGTATTTTTAATTAGATATCTTATATTTGAATTCTTAGAAATAAAAAGAATATTCACTATCTCTAAAATGATGATAATATACAAATCCAAATTTAATAGTTAGAGTCGGGTGAATATAATTGCTCCATTTTCAATAGTTCATAAAATCAAATCCATGTATTATATGTCTATTCTACCTGGCTAACAATAAATATATTACAAAAAAAAATAATCAAATATTCAGTAAAATCTCACTAAATAAAATTTATTGAAAATAAAATGTACGTAAATTTTATTATTATTTTGTAAAAGTGAATCTACAAGAGCGAAACAATTATAATACAATAAACAGTCTATGAAAAAAATTACTAATGAACAAGAATATTATTGTACTAGAATGCAATATTTTTAATAATTAAGAACTTATTTATTAATAAAGGTCAAAAATCGAGTAATATAATTATAATTTCTAGCAATCTAAGGAAAATTCTGAAAGTTATCTAGAGAATGGTAGACATAGAACTAAAAAGAAATAATTGATTGGAGAATACAAATCCCAAGATCATCTGCTTTTAACTGCAACTATTTTAATATATAGTCTGAATTCAGAGAACTCATTTACTGCTCCTACATGTATGAACAAAGTATTATTCATTTATTATAAGTTGTGGGAAGTCAGTTTTCAAAATTTATTATTTATTGTTAAAAAAAGAAGAAAAAGGACAATAATTAGATCAGTGAGAAACGTAGACTATAGACTCATACACCATGCAAAGCCAAAAAAATAAAATAAAAAGTCTTCATTTTTCTTACCCACTCTATACGCTAAACGCCGTTGCCGCACGGTAGTTTCATAAATGTACTTATATTTTTCTTTTAAAAAAAGGTTATTTGATTGTGAAACAAATAAGGGTTTCTACGTCTTCTATTATTTGTAGCTCGATTCATTGTTTTTACTTAACTTAGGAGTTAAGAGATAAAGAGACGATATTCAAACAAGTTAATCGGATTATCTAATAATGCAAGTATTCGATGTCTCTTCACATATTCGAACTTGACAACTAAAGCGTGAATATAATATGTGATCAATAGCAGACTCGGGTGTTTTCAGAAACTCGAATTGAGGGCATGCAACTTGACATTCAACGGACTTGCCATTGAATCATCTATTTCTATTTATTTTTTAGGGGGTTCAAAATGTATATATTTATAAAAATACAAAAAATTTACTTTTTTATATATATTGTGTATATTTGTATCGACTGTGTGAATCAAGAATTAAACCGAAACGAATTCCTATATTATGATAAAGAAATTTATGTTGGATCTAATTTAATTCCTCATAAGTTAAAAATTATTTGAGTTCACATAAAAAAGATAATCACATCCTTAATTAGCAAATGTGAAAACTCAACATATATAGCCTTTCTTGCAAACACATGTTAAGTAAATTTAAGTTATATTTTAGACCTGAAACTATTGATTAAAACGATAGCGAAATATTTTTAAATTTATAACAAGGTTTATATTCATTCATTTTCTCAATCTCTAATCTAAAATAATTTAAGTTTGATGTAAAGATGCTTTAAAAATATAATATACCTAATTTATTTATTTCTCATAATAAAAAAAATTCACAAATCACTAATTTTTAGGCAAACATAATAAATGTCGCTCATATACACTAATTTTCAAATTATATAGAAAAAATAACTCACACCAAACTTATCTGATGTGGCAAGCTCGAGCAAGGTCATCAACACTCAATAACGACTAGTTAAACTTGACATAGTGCATTATAAAATCAACGTTATTAATATGGTGTTACTGCAGAGATCCCAATGTCAATTAGGCGGCTTCCATTACCTTTCTAAACTCCTTATCACCAACAAGGTAAGAAGCATCCTTCCATTTTATTCTCTTTTAATTAAATTATCTCCTTATAAGTCAACTTTTCTAAAAAACCTAACTTTGTTACCACTTTCCTTCCTTTGTCTCTATCTCTCTTCTTGTTGGGTCAACCAACCACGTTATTAACATTAATTATATGTCCCCTCTTCATTTGATTCTCAATTTTTTTTATTCGTTAAATATTTATATTAAAGTCCGATTAAAAAATATTTTATTATTCCACGTAGAGTCATGTGATTCTTCTTTATAAAATGTAGTGCCATTCCCTCTTATAAACTCACCAACATTTTTCCAAAAGCACAAAGTTTTCTCTCTGAACACAAAAATGGAAGAATTAGATGCTCTTTATCCACCAGATTCTGATCTTGATCTAAGTTTCACAAGTTGTGCTTCCATTACTACCACCACAACGGATCGTACACTCAGTGCGAGAAGCAGTTTAGCTCGTAGTAGTCTTACATTGAGCTTCAACGATCGTCTTTCATGTACGTCCTCAACAAACAATCCATCTGCAGAAATCCCCAATTTCCACCGCCGTGCACACCGCCAGCACGACCCGAATTGGTCTGCTATTAAGGCGGTGACCACCCTTTCCTCCGATGGCTCTCTCCATCTCCGCCACCTTAAACTCCACCGCCTTGTTGGGTCTGGAAATCTCGGCCGAGTTTTCCTCTGCCGTCTCAGGGATTATGACCATGCTAATTTTGCCCTTAAAGTTATCGATCGGGATTCGCTTACAGCGAAGAAGATTTCTCATGTTCAAACGGAGGCGGAGATTCTCTCCTCTTTAGATCACCCTTTTCTACCTACACTTTATGCTCATTTAGAAGTTTCACATTATACTTGCTTGTTAATCGATTTCTGCCCTAATGGGGATCTCCATTCCTTGCTCCGAAAACAACCTGGAAACCGTTTACCGGTTGATTCAGTCAGATTCTACGCAGCTGAGGTACTCATAGCACTAGAGTATCTACATTCTCTCGGAATCGTTTACCGTGATTTGAAACCTGAAAACATACTTATTCGTGAAGATGGTCACATTATGCTTTCCGATTTTGATTTATGTTTTAAATCCGAAGTTTCCCCGAAATTAGATTTCACTACCCGTGTTCTAGAAGGATCTAGAAGAAGAAGAAACAGTTGTTACGGTGACCGGCAACGGGAAGAAACAGTGACCGAGTTCGTCTCAGAGCCAACATCTGCATTTTCTAGATCATGCGTCGGGACTCATGAATACTTAGCGCCGGAGCTCGTCAGCGGCGCCGGCCACGGCAATGGTGTAGACTGGTGGGCGTTTGGGGTGTTACTATACGAGTTGTTGTACGGTACGACACCGTTTAAAGGAAGCAGTAAAGAGTCTACCCTGCGCAATATAGCATCAAGCAAAGGAGTGAAGTTTTACGTAGACGAAACTCAAGGAGAAGAAGCTGAATTGAGAGATTTAATAGAGAAATTATTAGTTAAGGATCCAAGGAAGAGGCTAGGATGCACCAGGGGTGCAACGGATATTAAACGTCACCCATTCTTCGCCGGAATAAAATGGCCGTTGATCAGAACTTACCGGCCGCCGGAAGTACGGGGAATAACGATAAAAAGGACGAAGAGTAAGGCGCATGTGAGTCACGTGACTGGATTCTCGTCATCACCAAGAATAAGAAGGCGTTGTTTATGGAAAAAATTGGGTTATCTAATGAGGATTAAGGGATCTAAGTACAATTTAAACTCTAATCATAATTATTATTGTCATACTAATCACAAGGTTAGAAAATGTGCTTAAATCCATTTCAACCTTTTGTAAAACCATTTATATTGTTATAATTTTCCCCTTTTTTTTTGGGTATAAGTTTGTAAAGGAGGAGTTAGAGAACATCAATTTTGGGGGGAGATGTTCAAATTTTTTTCCTTTTCTTTGGTTTGTTTCCTTTTTAAAGGAAATTTCATACATATTTGTAAATGAAAAAGAAAGTTATGGAAGAAAAAGTATTTATTTAATTATGTATTATTTGCTTCTGTAATTCTTTTTTACATGTTTTCTCATTTTATAATGTATTAAATGCTTACATTAGGCTAATAGGTGCATGACAGATACGATAAGATATACGTAAATCTAACTACAATCGATATATAGAAAAGTTGTTCTGAGTAACAAACATAGCAATCAAAATGAATTTTCATTTCATTAAATTACATTTTTATATATATATATATATACATTGACAAAAATATCTTTGATTAAATATGATTGTCTCCTTTCCTTTTATTCCCCTAGCAACAATATAATCTTTTTTATAAGAAAAAGAAAAAAGAAAAGAGAAAAACAAAACTCCTAATTGCTTTCCATGTTGTAATTTGTTGTTGTTGGTGGACAAAAAATGTTTGGTAATTTTGTAAAATATGCCATTGAAAAGAAGAAAAAAAGTTCCTTAACATGATATATTCCTCACATATGCTAATGATGAGTTTGTAATATGATATTTTAATAATTAAATGAATGATTTTGTCCCATTCTTTAAAATTGTAAACTCCTGTTAGAAGTGAATATGCTCATCATAATAATGTCTTGATATTATTGATCAATCTTTATGTTATTGAAAACTTTACTTAGGCTGGAAAACATTATTATGACACATTGAAAATAAACAAATTCTTACCGTCTTTATTTATATCAAGTATAAATAAAAAAATGTACAACTTACATATATATTAAATGATGAAAAAAATCGAGGAATCATATTGATTGTTTTTTTTTTAAATACTTTATTTAAATATGTTTTTAATTATGCTATTATATTGATTCTTCTCCAAATATGAATAGTTAGACGTTCATTCAGTTTTTATGATAAAAGACTATAGATCATTGATCGTGACATTTACGAGTATCAGATAATTAACAGTTAAACGTGGGACATCAAACTAAACATGAACATATGATGGCATGTGGGAGCAATATGGTGTGGTTACCATAATTCATGCAAATTGCATATGGGTTTCCAAGGTTTTGACTTATAATTAGTCAGCAATATTTATTATTATTGTTAATTATTATTATTAATTAATATAATATGAAACCTAACTTTGGTGGATGGTAACTGGGAGAAGGGACCAAATTAATACTAGTAAAATAATTTAAGAATGGATAGAAACCTAATTATTCCAGAAGGTCTATAATTAATTATAAAGCCTATTTGCATATTAAATAAAAGTTGCTAGTACAGCTCAACATCGACCGACCACAAGAATTTTTTTGCAAAAAATTAAGTTACAAGTTGTGAGACATAACTATGGTCCCTTTACTAGAAAGTAACATTTATCATTAAATATTACTAACTATATAGTCAAAATTGCATATAAAAATTGGAAATTTTGTTTTCACATAAAAAGATAGTTTTTGCTTATATATAACAATTAGCTGATAAGATCTGATGTCCATTTACTATAATAGCCAACAATAGTCTAGACAAACGGCGCTACTATAAAGAGGTCTGATTGAATATCCGTTAATTCAAGCACAAAATATGTTCTTTATGGGAACCAAGAATGCCAACTCTGACTATATATTATAAGATTATTTCAAAAATAACCAAATGATTAGTAACTGAATACTAATTAGGCAGTTAATGTGTAGACAGATCATAAAAGTAGATATTATAATTTAGAAGATAAATAGATAAGAAATGCCAACTAATAATTATTAGAGGGGAAGTATGGCATCAAAGGTAGTTGTGTGTATACATGAATAATGAGATGCTTCTAACTCTACAACTTCAATTTTCTTTTTCTTTGGTCTATAGTTGGTTAATTAGAACCTGCAAAAAACAGAAAGTGGATGCATTTTAGTTTTCTATGGATGATAATCTGAATTTGTGTTGCTCCGACTCTAAAAAAAAATATCACTCGATGCATGTCAGATCTTCCGAAAGTAGTGTTTGATGATATTATGGAGAGTTCGCGCAACATTCTGAATCGAAATTACCAGACATGTATGGCAGGAATACAGAAATGCTACTAAAAAAATGTAGAAACTGGTTCTTGTTAGTAAACAGACATGTGATTTAGCTGATTTTTCTTTGTGAACATCCCTTCAGTATAGAATAATTCCTTTTATTATTAACTAAACTTAGAATTATGGACATGAAAAATGAGATATCCTTTCTTTTGGGGCTGCTATAAACACAGGTATCGATCAATATGTGTTTAAATGATATACAATCAATCATCTGTATAACTGTGTTAGTTGTTCCAATATTTGGATCCTATAGCGAAATGTTGTTATAGAGAATATGTGATGTAACATAACATGAAAAATCGGTTACATAGGAAACACGTCTGTTATAGTGAAATGTTGTTATAGAGGATGACTGTTATAGAGAGGTTTGACTGTAAAGATTGAAAGTTAACGAGGAAAATGTTTTTATGTACCTTTATTAGCATCAGCTTCACTCAGAGGAGTTTCGGAGGATGGTGATGGTGGTGAAGTGCACACAGATTCCCGGGCTTCAATCAGCATGGCGATGACTTCTCGCATAGTAGGCCTATTGGCAGGGGATGTATTGGTGCAGAACATAGCAATCTTGAGAACTAGAGACATCTCCTCTCTTGTTCTTGCAACACTAACATCCAGTCTTTTGTCAAAAAGCTCAGTTAGTGCCACTCCTTCATGAATTGATCTCCTTACACAAGTCACCAAATCGCCTCCCTGATCGAGGGGTTGAACTGGAGACCTACCAGTAATCAATTCCAGCAAAACAACGCCATAACTATAGATGTCGCATTTCTCTGTCACTTTCATTGTGTATGCATATTCTGAAAAAAAGAAAAAAAAAAAAGAACTTAGTTAGCTTCTGCATTTAAGTTATGCTAATATAGAGTACCGTTTTAAGTGCCTCAAGACCGGTCTTACCAGGGGCAATGTAGCCGTATGAACCAGCAACTGCGGACATGGATTTTGAGTAAGGGAAGTCAATTAGCTTTGCCAAGCCAAAGTCTCCAACATGTGCCTCAAGCAATTCGTCCAACAAAATGTTGTTCGATTTTATATCCCTGTGAATGATATGTGGCTTACAGTCATGGTGCAAATAGCATAGTCCCTCAGCAGCTCCTAAGGCAATTTTGTACCTGCTATTCCAGTTTAGTAAACTAGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TAGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-ACCATG-ATTCTG-CTAAT-A-A-AGGCGCTTCGCCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATTGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAGTGTAATTG............................................................AGTTCTGCTTTTACATGTAATAAAAACTCTTGGATCTGTTTTCTTGAGTCTTGTCTATTGTATGATTCTGGGATTTTCGAAAAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280387" ref_strand="-" ref_description="SGN-E280387 [cLER-1-D13]">
      <seq>taattttggttgtgtgaataatgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtaaaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactcttggatctgttttcttgagtcttgtctattgtatgattctgggattttcgaaaacaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="28828" stop="8315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28528" g_stop="28307" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28306" i_stop="25832" i_length="2475">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25831" g_stop="25790" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="258" r_length="36" r_score="0.619"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25789" i_stop="22402" i_length="3388">
            <donor d_prob="0.999" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22401" g_stop="22387" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="273" r_length="15" r_score="0.800"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22386" i_stop="18930" i_length="3457">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18929" g_stop="18920" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="283" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18919" i_stop="17346" i_length="1574">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17345" g_stop="17332" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="297" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17331" i_stop="17272" i_length="60">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17271" g_stop="17170" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="399" r_length="102" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E280387" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280387" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28528" e_stop="28307"/>
          <exon e_start="25831" e_stop="25790"/>
          <exon e_start="22401" e_stop="22387"/>
          <exon e_start="18929" e_stop="18920"/>
          <exon e_start="17345" e_stop="17332"/>
          <exon e_start="17271" e_stop="17170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATTTTACCCTTTCCTAAATTTTATTTGTACGAAATGTTTTCTATATCGAACCACATTTTCCCCTTTAATACTCCTGTTCACATTTCTAAGGTTTCAAAATATAAGTTGAGCCATGCACAAATATATTCCATCTAAGGATTAAAATTAACCTAGCAAATCAGAGAGTATTTTGATTAAAATTAGTGCAAAATATTATTGATAATGTTTAATAACAAATAAGTAATATAAAGCTAATAAAAATAATTGCAAGTAAAATAACTTTCTTAAAAATGAATTTCTTCTTAATCACATCCAACAAACTGCAAGAAAATAAGTCGATTTATGCAAAATCGTCACTTATAATTTTTTCATGTTTTAAAAGTTGTACAACTATAGTCCTTGGGACCAACGAAGTACAAAATGTCTGTCTAACTTTTATAAAATTTTATATCGCGATCTAAATTATCATCATAAATTATTTAAATTTATTTTTAAAAAAATCATTTATCATAAAATAATAATTTACTAAATAATTGTCGCTATCGGCCCATTTACGAATCGTAAGGGCCCAATGATTAAATCTTGATATTTAGTGGTTGGCCCAATGATCTGGAGCCCATAGGGGGAGGGACATACAACGTCACATGCCTTTCATGTATATTCCTATAGCCAACATTATGTCATGTTGAGGTTATAATGCAAAGCCATACAAGTAGGCACATGTATTTGCAACAAATAAAATGTTATTTTGGGTTGGGGTGGGGAAGATAGAGATATAATGAAACTTGGAGTGATTATATACACATACATAGACATTTTAAAATAATGACGGTCGAGATAGAAATTTCACTGTGATATGATGTTCTTATAAAAGAGGATTCACACCATGTGTGGCTCTATCAATAATGAGCTTGCTTGGTATGAGGAATAAGAGATAACTGATCTCAAGATTGATTCCGAAATGAGTTTATTCGATATTTAACTGAGATAAAACCACTAAATAATTATCTCAAGATTGTAATGTTATTTTTTATGAAATCCATATTAAAATTGGAATATTCAATATAACGTATTCCCTAGTCAAATGAATTGTAAGAGTTTGGATACATACTAAATTGGAACCTACTAAATATACCCTAAGATTTAACCTTTGATAAGTTCTTTTCTTACCTTATTCACTTGTAAACTCTCGAATTGAAATCATACTAAATGTAGCAAATATCAGAAATATTGGAGGTTTGAATAATTTAGATTATGTATTTTTTTGTTTTATATTATTTAGCTCGTATTGACTTAACTCATTTCTTTAAAATGCTATTTATTGGGAGTGTATTACTAAATTAACTTTATTAATAATACTTTGAAATTCTAAAATTTACTATTACTATAATTATTTAATACTAAGAATAGAACCAAATATTTCTTTATATAATAAAAATCTCTTTATTTATCGAATCAGACTAGCAAAAGAAAACATCTTTTAATAGAACTAGGGGTCAAGTAATATAAACAATAATAGTATATTAATAAATCTAATAAATATTTTTTTTAAAAATTAATTCTTCAATATAAGTAACTCCTTTTTTAATATATCTAAACCCATAAGTTTCAAAAATATTTCAATGCATACATATACTTTTAGTTAAGATTAAAAATATTTAAAACTCTTTATTTTTAAATATGTATTTGAATGTTATTAAAATAAATAAATAGAAACCACGACAATAATTTAAATATCAATTTTAGGATGAAAAATAAGGGGCCACAATTTAGACACTTTGACTGAAATCACATTCTAATACAGTAATTGAGACTTGAGAGGGAAACATACTGAGAAAAAAGGGAAAAAAAAGAGAGGGAAACATCAATTTTTCAAGTTATTATTTTTATTGCCTAACAAAAATATATAAAAAAAAAAATAGGACTGGCAAATTCAGGTCTCTATCACGTGCCAATGGCAGGTTGGTACATTACTCTAATTATTTAAAAATTTATTTAATAATTTGATGAATTATTAAGCATTAACTAAATAGGTAAGGGGCCATTATTATTGACAAATAATGAGTGAAAGACTATTTTATTTTAGTTTATTTTGTACTATTATTATTTTTTTTCTTATTATTCTATTCATTTTTATTACAGAGATTGAAGCTGATAGTAGTGATAGTGTAGGGCCCAGTGTTCACCACGTGGCAGACAGCATCGTATAAACTTTCCAACTGGGTCCCATGATATTGGGCCCCATCACGTGGGTCCATTAACCTGGCCACTTTCTATATCTGGGGTTCTTCTCTAATTAAAAATTATTGAAGTTTAAGTAGTTTTTTTTTTTGTTAATTTTATTTAATTAATGAGTTCTTAGTTATATTCTTAATGGGTTAGTGGCACAAAGTCGTCTGCCTAATGACACTGGCGTTGGGTCCGGTAACTTTCGACAATAATTTTTCAATTAATACAAAAATTATTTTACCTATCGCTTGATATAGTAAATTATATTAAAATTATTTTTTATTGATGATTTGATTTGATTTGTTAACTATCTTTAATCTTGCTTATATGTATATTTATATTCATTTTATTATTAATATCATTATTTATATCTATGTACTAATTATACAAAGTAACACCAAATAAAATGTATTAATTATATGTAAATCTAAAATCTTATCAAATAAAGGTTTGAATAATATCACGACTACTATATATATTCTTTTGTTTCAATTAATTTGATTTGTTTTTTCTTTTAAAAAATTACGTATAACAATGAGTTTTCTAAATCAAATATAGACTAATTTTGTTTCATTTGCTCAATAAAACTCGTACGAAACCTTTATATTAAATATAAAATTATTGGTACAATTAATTGTCAATTATAGATACTCTAATTAAGATTTTATCAAGTGTTCAATCAATGATGGGGGAATTAGGAACAACTCCTAATTATGGCACCGTTCTATAAGGGATATTGTTTAGACTTTAGAGTCTATGATATATAAGCAAAAGATTTCCAAGATTTATTTGGGGGAAATGTGAAAATAATTAGTACTCAACATAATTAAAATATTTTTATAATGACAAAGTTTGTATGAGAAGATATATGTATACCACCGCATAGATTTTATTTAGTTGTTATAAATCTAACTATGTAAAATTAGAAGAATCGAATACGAAAAAGTAAACATTAGTAACATTTTCTAGTGAAGTTAGGACCATATAACTTATGGATACTACTTAAACATAATTTTTTACTTTTTAGTGTCTTGAGATTTACTACATGCATGACATCAATAATAACTACTATAAATATTTTATTTTTATAAATATTTATTTACACTATATGTGAATATTATGTAATTAAGAGAGAATTTTACAAAAGTGAACTATCATAATGAATGTCATTATTGATATAAGTAGAGTGTTACTAAAGAAAATATATAATGTGAAAAAATTAATTATGGAAAAAAGGAGAAAAAATAATTTTATAAGAAACTACAGTTATAAAAAAAAATCGACTGTATTTAAATTAAAAAATTGTAATTATATTCTATGAAAAGACTTCCTACCATTTTTTTTAAAATTTTTCTACCATGCAACTGCAAACATATTTCACGTGTGATTAAGATAACCATATGCTTTTGGCCATTTGATTTAATTTGCACCAATAATTTTTTTTTACACTATTTCGAAAGTACTACTCCATAATTGGAAAAGATGTATCAATAATTTCATTTTTATTGTACTGATTTGTGATTAATGCCGAAAAATCAACTCTATTTTTTAAGTATGATTAGATATGTCTGCATGACTTAGAAGAGTTTCACACTATTTAGAACTAAATTTTATCGAAAAATGGTTGATAACTGATAATAATCGTAAATAGCAATATAAATTATCATGAGATAATTGAATTCTCTTGTATTTTTAATTAGATATCTTATATTTGAATTCTTAGAAATAAAAAGAATATTCACTATCTCTAAAATGATGATAATATACAAATCCAAATTTAATAGTTAGAGTCGGGTGAATATAATTGCTCCATTTTCAATAGTTCATAAAATCAAATCCATGTATTATATGTCTATTCTACCTGGCTAACAATAAATATATTACAAAAAAAAATAATCAAATATTCAGTAAAATCTCACTAAATAAAATTTATTGAAAATAAAATGTACGTAAATTTTATTATTATTTTGTAAAAGTGAATCTACAAGAGCGAAACAATTATAATACAATAAACAGTCTATGAAAAAAATTACTAATGAACAAGAATATTATTGTACTAGAATGCAATATTTTTAATAATTAAGAACTTATTTATTAATAAAGGTCAAAAATCGAGTAATATAATTATAATTTCTAGCAATCTAAGGAAAATTCTGAAAGTTATCTAGAGAATGGTAGACATAGAACTAAAAAGAAATAATTGATTGGAGAATACAAATCCCAAGATCATCTGCTTTTAACTGCAACTATTTTAATATATAGTCTGAATTCAGAGAACTCATTTACTGCTCCTACATGTATGAACAAAGTATTATTCATTTATTATAAGTTGTGGGAAGTCAGTTTTCAAAATTTATTATTTATTGTTAAAAAAAGAAGAAAAAGGACAATAATTAGATCAGTGAGAAACGTAGACTATAGACTCATACACCATGCAAAGCCAAAAAAATAAAATAAAAAGTCTTCATTTTTCTTACCCACTCTATACGCTAAACGCCGTTGCCGCACGGTAGTTTCATAAATGTACTTATATTTTTCTTTTAAAAAAAGGTTATTTGATTGTGAAACAAATAAGGGTTTCTACGTCTTCTATTATTTGTAGCTCGATTCATTGTTTTTACTTAACTTAGGAGTTAAGAGATAAAGAGACGATATTCAAACAAGTTAATCGGATTATCTAATAATGCAAGTATTCGATGTCTCTTCACATATTCGAACTTGACAACTAAAGCGTGAATATAATATGTGATCAATAGCAGACTCGGGTGTTTTCAGAAACTCGAATTGAGGGCATGCAACTTGACATTCAACGGACTTGCCATTGAATCATCTATTTCTATTTATTTTTTAGGGGGTTCAAAATGTATATATTTATAAAAATACAAAAAATTTACTTTTTTATATATATTGTGTATATTTGTATCGACTGTGTGAATCAAGAATTAAACCGAAACGAATTCCTATATTATGATAAAGAAATTTATGTTGGATCTAATTTAATTCCTCATAAGTTAAAAATTATTTGAGTTCACATAAAAAAGATAATCACATCCTTAATTAGCAAATGTGAAAACTCAACATATATAGCCTTTCTTGCAAACACATGTTAAGTAAATTTAAGTTATATTTTAGACCTGAAACTATTGATTAAAACGATAGCGAAATATTTTTAAATTTATAACAAGGTTTATATTCATTCATTTTCTCAATCTCTAATCTAAAATAATTTAAGTTTGATGTAAAGATGCTTTAAAAATATAATATACCTAATTTATTTATTTCTCATAATAAAAAAAATTCACAAATCACTAATTTTTAGGCAAACATAATAAATGTCGCTCATATACACTAATTTTCAAATTATATAGAAAAAATAACTCACACCAAACTTATCTGATGTGGCAAGCTCGAGCAAGGTCATCAACACTCAATAACGACTAGTTAAACTTGACATAGTGCATTATAAAATCAACGTTATTAATATGGTGTTACTGCAGAGATCCCAATGTCAATTAGGCGGCTTCCATTACCTTTCTAAACTCCTTATCACCAACAAGGTAAGAAGCATCCTTCCATTTTATTCTCTTTTAATTAAATTATCTCCTTATAAGTCAACTTTTCTAAAAAACCTAACTTTGTTACCACTTTCCTTCCTTTGTCTCTATCTCTCTTCTTGTTGGGTCAACCAACCACGTTATTAACATTAATTATATGTCCCCTCTTCATTTGATTCTCAATTTTTTTTATTCGTTAAATATTTATATTAAAGTCCGATTAAAAAATATTTTATTATTCCACGTAGAGTCATGTGATTCTTCTTTATAAAATGTAGTGCCATTCCCTCTTATAAACTCACCAACATTTTTCCAAAAGCACAAAGTTTTCTCTCTGAACACAAAAATGGAAGAATTAGATGCTCTTTATCCACCAGATTCTGATCTTGATCTAAGTTTCACAAGTTGTGCTTCCATTACTACCACCACAACGGATCGTACACTCAGTGCGAGAAGCAGTTTAGCTCGTAGTAGTCTTACATTGAGCTTCAACGATCGTCTTTCATGTACGTCCTCAACAAACAATCCATCTGCAGAAATCCCCAATTTCCACCGCCGTGCACACCGCCAGCACGACCCGAATTGGTCTGCTATTAAGGCGGTGACCACCCTTTCCTCCGATGGCTCTCTCCATCTCCGCCACCTTAAACTCCACCGCCTTGTTGGGTCTGGAAATCTCGGCCGAGTTTTCCTCTGCCGTCTCAGGGATTATGACCATGCTAATTTTGCCCTTAAAGTTATCGATCGGGATTCGCTTACAGCGAAGAAGATTTCTCATGTTCAAACGGAGGCGGAGATTCTCTCCTCTTTAGATCACCCTTTTCTACCTACACTTTATGCTCATTTAGAAGTTTCACATTATACTTGCTTGTTAATCGATTTCTGCCCTAATGGGGATCTCCATTCCTTGCTCCGAAAACAACCTGGAAACCGTTTACCGGTTGATTCAGTCAGATTCTACGCAGCTGAGGTACTCATAGCACTAGAGTATCTACATTCTCTCGGAATCGTTTACCGTGATTTGAAACCTGAAAACATACTTATTCGTGAAGATGGTCACATTATGCTTTCCGATTTTGATTTATGTTTTAAATCCGAAGTTTCCCCGAAATTAGATTTCACTACCCGTGTTCTAGAAGGATCTAGAAGAAGAAGAAACAGTTGTTACGGTGACCGGCAACGGGAAGAAACAGTGACCGAGTTCGTCTCAGAGCCAACATCTGCATTTTCTAGATCATGCGTCGGGACTCATGAATACTTAGCGCCGGAGCTCGTCAGCGGCGCCGGCCACGGCAATGGTGTAGACTGGTGGGCGTTTGGGGTGTTACTATACGAGTTGTTGTACGGTACGACACCGTTTAAAGGAAGCAGTAAAGAGTCTACCCTGCGCAATATAGCATCAAGCAAAGGAGTGAAGTTTTACGTAGACGAAACTCAAGGAGAAGAAGCTGAATTGAGAGATTTAATAGAGAAATTATTAGTTAAGGATCCAAGGAAGAGGCTAGGATGCACCAGGGGTGCAACGGATATTAAACGTCACCCATTCTTCGCCGGAATAAAATGGCCGTTGATCAGAACTTACCGGCCGCCGGAAGTACGGGGAATAACGATAAAAAGGACGAAGAGTAAGGCGCATGTGAGTCACGTGACTGGATTCTCGTCATCACCAAGAATAAGAAGGCGTTGTTTATGGAAAAAATTGGGTTATCTAATGAGGATTAAGGGATCTAAGTACAATTTAAACTCTAATCATAATTATTATTGTCATACTAATCACAAGGTTAGAAAATGTGCTTAAATCCATTTCAACCTTTTGTAAAACCATTTATATTGTTATAATTTTCCCCTTTTTTTTTGGGTATAAGTTTGTAAAGGAGGAGTTAGAGAACATCAATTTTGGGGGGAGATGTTCAAATTTTTTTCCTTTTCTTTGGTTTGTTTCCTTTTTAAAGGAAATTTCATACATATTTGTAAATGAAAAAGAAAGTTATGGAAGAAAAAGTATTTATTTAATTATGTATTATTTGCTTCTGTAATTCTTTTTTACATGTTTTCTCATTTTATAATGTATTAAATGCTTACATTAGGCTAATAGGTGCATGACAGATACGATAAGATATACGTAAATCTAACTACAATCGATATATAGAAAAGTTGTTCTGAGTAACAAACATAGCAATCAAAATGAATTTTCATTTCATTAAATTACATTTTTATATATATATATATATACATTGACAAAAATATCTTTGATTAAATATGATTGTCTCCTTTCCTTTTATTCCCCTAGCAACAATATAATCTTTTTTATAAGAAAAAGAAAAAAGAAAAGAGAAAAACAAAACTCCTAATTGCTTTCCATGTTGTAATTTGTTGTTGTTGGTGGACAAAAAATGTTTGGTAATTTTGTAAAATATGCCATTGAAAAGAAGAAAAAAAGTTCCTTAACATGATATATTCCTCACATATGCTAATGATGAGTTTGTAATATGATATTTTAATAATTAAATGAATGATTTTGTCCCATTCTTTAAAATTGTAAACTCCTGTTAGAAGTGAATATGCTCATCATAATAATGTCTTGATATTATTGATCAATCTTTATGTTATTGAAAACTTTACTTAGGCTGGAAAACATTATTATGACACATTGAAAATAAACAAATTCTTACCGTCTTTATTTATATCAAGTATAAATAAAAAAATGTACAACTTACATATATATTAAATGATGAAAAAAATCGAGGAATCATATTGATTGTTTTTTTTTTAAATACTTTATTTAAATATGTTTTTAATTATGCTATTATATTGATTCTTCTCCAAATATGAATAGTTAGACGTTCATTCAGTTTTTATGATAAAAGACTATAGATCATTGATCGTGACATTTACGAGTATCAGATAATTAACAGTTAAACGTGGGACATCAAACTAAACATGAACATATGATGGCATGTGGGAGCAATATGGTGTGGTTACCATAATTCATGCAAATTGCATATGGGTTTCCAAGGTTTTGACTTATAATTAGTCAGCAATATTTATTATTATTGTTAATTATTATTATTAATTAATATAATATGAAACCTAACTTTGGTGGATGGTAACTGGGAGAAGGGACCAAATTAATACTAGTAAAATAATTTAAGAATGGATAGAAACCTAATTATTCCAGAAGGTCTATAATTAATTATAAAGCCTATTTGCATATTAAATAAAAGTTGCTAGTACAGCTCAACATCGACCGACCACAAGAATTTTTTTGCAAAAAATTAAGTTACAAGTTGTGAGACATAACTATGGTCCCTTTACTAGAAAGTAACATTTATCATTAAATATTACTAACTATATAGTCAAAATTGCATATAAAAATTGGAAATTTTGTTTTCACATAAAAAGATAGTTTTTGCTTATATATAACAATTAGCTGATAAGATCTGATGTCCATTTACTATAATAGCCAACAATAGTCTAGACAAACGGCGCTACTATAAAGAGGTCTGATTGAATATCCGTTAATTCAAGCACAAAATATGTTCTTTATGGGAACCAAGAATGCCAACTCTGACTATATATTATAAGATTATTTCAAAAATAACCAAATGATTAGTAACTGAATACTAATTAGGCAGTTAATGTGTAGACAGATCATAAAAGTAGATATTATAATTTAGAAGATAAATAGATAAGAAATGCCAACTAATAATTATTAGAGGGGAAGTATGGCATCAAAGGTAGTTGTGTGTATACATGAATAATGAGATGCTTCTAACTCTACAACTTCAATTTTCTTTTTCTTTGGTCTATAGTTGGTTAATTAGAACCTGCAAAAAACAGAAAGTGGATGCATTTTAGTTTTCTATGGATGATAATCTGAATTTGTGTTGCTCCGACTCTAAAAAAAAATATCACTCGATGCATGTCAGATCTTCCGAAAGTAGTGTTTGATGATATTATGGAGAGTTCGCGCAACATTCTGAATCGAAATTACCAGACATGTATGGCAGGAATACAGAAATGCTACTAAAAAAATGTAGAAACTGGTTCTTGTTAGTAAACAGACATGTGATTTAGCTGATTTTTCTTTGTGAACATCCCTTCAGTATAGAATAATTCCTTTTATTATTAACTAAACTTAGAATTATGGACATGAAAAATGAGATATCCTTTCTTTTGGGGCTGCTATAAACACAGGTATCGATCAATATGTGTTTAAATGATATACAATCAATCATCTGTATAACTGTGTTAGTTGTTCCAATATTTGGATCCTATAGCGAAATGTTGTTATAGAGAATATGTGATGTAACATAACATGAAAAATCGGTTACATAGGAAACACGTCTGTTATAGTGAAATGTTGTTATAGAGGATGACTGTTATAGAGAGGTTTGACTGTAAAGATTGAAAGTTAACGAGGAAAATGTTTTTATGTACCTTTATTAGCATCAGCTTCACTCAGAGGAGTTTCGGAGGATGGTGATGGTGGTGAAGTGCACACAGATTCCCGGGCTTCAATCAGCATGGCGATGACTTCTCGCATAGTAGGCCTATTGGCAGGGGATGTATTGGTGCAGAACATAGCAATCTTGAGAACTAGAGACATCTCCTCTCTTGTTCTTGCAACACTAACATCCAGTCTTTTGTCAAAAAGCTCAGTTAGTGCCACTCCTTCATGAATTGATCTCCTTACACAAGTCACCAAATCGCCTCCCTGATCGAGGGGTTGAACTGGAGACCTACCAGTAATCAATTCCAGCAAAACAACGCCATAACTATAGATGTCGCATTTCTCTGTCACTTTCATTGTGTATGCATATTCTGAAAAAAAGAAAAAAAAAAAAGAACTTAGTTAGCTTCTGCATTTAAGTTATGCTAATATAGAGTACCGTTTTAAGTGCCTCAAGACCGGTCTTACCAGGGGCAATGTAGCCGTATGAACCAGCAACTGCGGACATGGATTTTGAGTAAGGGAAGTCAATTAGCTTTGCCAAGCCAAAGTCTCCAACATGTGCCTCAAGCAATTCGTCCAACAAAATGTTGTTCGATTTTATATCCCTGTGAATGATATGTGGCTTACAGTCATGGTGCAAATAGCATAGTCCCTCAGCAGCTCCTAAGGCAATTTTGTACCTGCTATTCCAGTTTAGTAAACTAGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TAATTTTGGTTGTGTGAATAATGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAAAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-ACCATG-ATTCTG-CTAAT-A-A-AGGCGCTTCGCCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATTGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAGTGTAATTG............................................................AGTTCTGCTTTTACATGTAATAAAAACTCTTGGATCTGTTTTCTTGAGTCTTGTCTATTGTATGATTCTGGGATTTTCGAAAACAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230373" ref_strand="+" ref_description="SGN-E230373 [cLEL-35-C13](-)">
      <seq>ggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactcttggatctgttttcttgagtcttgtccattgtatgattctgggattttcgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="28821" stop="8336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28521" g_stop="28307" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28306" i_stop="25832" i_length="2475">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25831" g_stop="25790" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="251" r_length="36" r_score="0.619"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25789" i_stop="22402" i_length="3388">
            <donor d_prob="0.999" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22401" g_stop="22387" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="266" r_length="15" r_score="0.800"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22386" i_stop="18930" i_length="3457">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18929" g_stop="18920" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="276" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18919" i_stop="17346" i_length="1574">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17345" g_stop="17332" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="290" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17331" i_stop="17272" i_length="60">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17271" g_stop="17176" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="386" r_length="96" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E230373" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28521" e_stop="28307"/>
          <exon e_start="25831" e_stop="25790"/>
          <exon e_start="22401" e_stop="22387"/>
          <exon e_start="18929" e_stop="18920"/>
          <exon e_start="17345" e_stop="17332"/>
          <exon e_start="17271" e_stop="17176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATTTTACCCTTTCCTAAATTTTATTTGTACGAAATGTTTTCTATATCGAACCACATTTTCCCCTTTAATACTCCTGTTCACATTTCTAAGGTTTCAAAATATAAGTTGAGCCATGCACAAATATATTCCATCTAAGGATTAAAATTAACCTAGCAAATCAGAGAGTATTTTGATTAAAATTAGTGCAAAATATTATTGATAATGTTTAATAACAAATAAGTAATATAAAGCTAATAAAAATAATTGCAAGTAAAATAACTTTCTTAAAAATGAATTTCTTCTTAATCACATCCAACAAACTGCAAGAAAATAAGTCGATTTATGCAAAATCGTCACTTATAATTTTTTCATGTTTTAAAAGTTGTACAACTATAGTCCTTGGGACCAACGAAGTACAAAATGTCTGTCTAACTTTTATAAAATTTTATATCGCGATCTAAATTATCATCATAAATTATTTAAATTTATTTTTAAAAAAATCATTTATCATAAAATAATAATTTACTAAATAATTGTCGCTATCGGCCCATTTACGAATCGTAAGGGCCCAATGATTAAATCTTGATATTTAGTGGTTGGCCCAATGATCTGGAGCCCATAGGGGGAGGGACATACAACGTCACATGCCTTTCATGTATATTCCTATAGCCAACATTATGTCATGTTGAGGTTATAATGCAAAGCCATACAAGTAGGCACATGTATTTGCAACAAATAAAATGTTATTTTGGGTTGGGGTGGGGAAGATAGAGATATAATGAAACTTGGAGTGATTATATACACATACATAGACATTTTAAAATAATGACGGTCGAGATAGAAATTTCACTGTGATATGATGTTCTTATAAAAGAGGATTCACACCATGTGTGGCTCTATCAATAATGAGCTTGCTTGGTATGAGGAATAAGAGATAACTGATCTCAAGATTGATTCCGAAATGAGTTTATTCGATATTTAACTGAGATAAAACCACTAAATAATTATCTCAAGATTGTAATGTTATTTTTTATGAAATCCATATTAAAATTGGAATATTCAATATAACGTATTCCCTAGTCAAATGAATTGTAAGAGTTTGGATACATACTAAATTGGAACCTACTAAATATACCCTAAGATTTAACCTTTGATAAGTTCTTTTCTTACCTTATTCACTTGTAAACTCTCGAATTGAAATCATACTAAATGTAGCAAATATCAGAAATATTGGAGGTTTGAATAATTTAGATTATGTATTTTTTTGTTTTATATTATTTAGCTCGTATTGACTTAACTCATTTCTTTAAAATGCTATTTATTGGGAGTGTATTACTAAATTAACTTTATTAATAATACTTTGAAATTCTAAAATTTACTATTACTATAATTATTTAATACTAAGAATAGAACCAAATATTTCTTTATATAATAAAAATCTCTTTATTTATCGAATCAGACTAGCAAAAGAAAACATCTTTTAATAGAACTAGGGGTCAAGTAATATAAACAATAATAGTATATTAATAAATCTAATAAATATTTTTTTTAAAAATTAATTCTTCAATATAAGTAACTCCTTTTTTAATATATCTAAACCCATAAGTTTCAAAAATATTTCAATGCATACATATACTTTTAGTTAAGATTAAAAATATTTAAAACTCTTTATTTTTAAATATGTATTTGAATGTTATTAAAATAAATAAATAGAAACCACGACAATAATTTAAATATCAATTTTAGGATGAAAAATAAGGGGCCACAATTTAGACACTTTGACTGAAATCACATTCTAATACAGTAATTGAGACTTGAGAGGGAAACATACTGAGAAAAAAGGGAAAAAAAAGAGAGGGAAACATCAATTTTTCAAGTTATTATTTTTATTGCCTAACAAAAATATATAAAAAAAAAAATAGGACTGGCAAATTCAGGTCTCTATCACGTGCCAATGGCAGGTTGGTACATTACTCTAATTATTTAAAAATTTATTTAATAATTTGATGAATTATTAAGCATTAACTAAATAGGTAAGGGGCCATTATTATTGACAAATAATGAGTGAAAGACTATTTTATTTTAGTTTATTTTGTACTATTATTATTTTTTTTCTTATTATTCTATTCATTTTTATTACAGAGATTGAAGCTGATAGTAGTGATAGTGTAGGGCCCAGTGTTCACCACGTGGCAGACAGCATCGTATAAACTTTCCAACTGGGTCCCATGATATTGGGCCCCATCACGTGGGTCCATTAACCTGGCCACTTTCTATATCTGGGGTTCTTCTCTAATTAAAAATTATTGAAGTTTAAGTAGTTTTTTTTTTTGTTAATTTTATTTAATTAATGAGTTCTTAGTTATATTCTTAATGGGTTAGTGGCACAAAGTCGTCTGCCTAATGACACTGGCGTTGGGTCCGGTAACTTTCGACAATAATTTTTCAATTAATACAAAAATTATTTTACCTATCGCTTGATATAGTAAATTATATTAAAATTATTTTTTATTGATGATTTGATTTGATTTGTTAACTATCTTTAATCTTGCTTATATGTATATTTATATTCATTTTATTATTAATATCATTATTTATATCTATGTACTAATTATACAAAGTAACACCAAATAAAATGTATTAATTATATGTAAATCTAAAATCTTATCAAATAAAGGTTTGAATAATATCACGACTACTATATATATTCTTTTGTTTCAATTAATTTGATTTGTTTTTTCTTTTAAAAAATTACGTATAACAATGAGTTTTCTAAATCAAATATAGACTAATTTTGTTTCATTTGCTCAATAAAACTCGTACGAAACCTTTATATTAAATATAAAATTATTGGTACAATTAATTGTCAATTATAGATACTCTAATTAAGATTTTATCAAGTGTTCAATCAATGATGGGGGAATTAGGAACAACTCCTAATTATGGCACCGTTCTATAAGGGATATTGTTTAGACTTTAGAGTCTATGATATATAAGCAAAAGATTTCCAAGATTTATTTGGGGGAAATGTGAAAATAATTAGTACTCAACATAATTAAAATATTTTTATAATGACAAAGTTTGTATGAGAAGATATATGTATACCACCGCATAGATTTTATTTAGTTGTTATAAATCTAACTATGTAAAATTAGAAGAATCGAATACGAAAAAGTAAACATTAGTAACATTTTCTAGTGAAGTTAGGACCATATAACTTATGGATACTACTTAAACATAATTTTTTACTTTTTAGTGTCTTGAGATTTACTACATGCATGACATCAATAATAACTACTATAAATATTTTATTTTTATAAATATTTATTTACACTATATGTGAATATTATGTAATTAAGAGAGAATTTTACAAAAGTGAACTATCATAATGAATGTCATTATTGATATAAGTAGAGTGTTACTAAAGAAAATATATAATGTGAAAAAATTAATTATGGAAAAAAGGAGAAAAAATAATTTTATAAGAAACTACAGTTATAAAAAAAAATCGACTGTATTTAAATTAAAAAATTGTAATTATATTCTATGAAAAGACTTCCTACCATTTTTTTTAAAATTTTTCTACCATGCAACTGCAAACATATTTCACGTGTGATTAAGATAACCATATGCTTTTGGCCATTTGATTTAATTTGCACCAATAATTTTTTTTTACACTATTTCGAAAGTACTACTCCATAATTGGAAAAGATGTATCAATAATTTCATTTTTATTGTACTGATTTGTGATTAATGCCGAAAAATCAACTCTATTTTTTAAGTATGATTAGATATGTCTGCATGACTTAGAAGAGTTTCACACTATTTAGAACTAAATTTTATCGAAAAATGGTTGATAACTGATAATAATCGTAAATAGCAATATAAATTATCATGAGATAATTGAATTCTCTTGTATTTTTAATTAGATATCTTATATTTGAATTCTTAGAAATAAAAAGAATATTCACTATCTCTAAAATGATGATAATATACAAATCCAAATTTAATAGTTAGAGTCGGGTGAATATAATTGCTCCATTTTCAATAGTTCATAAAATCAAATCCATGTATTATATGTCTATTCTACCTGGCTAACAATAAATATATTACAAAAAAAAATAATCAAATATTCAGTAAAATCTCACTAAATAAAATTTATTGAAAATAAAATGTACGTAAATTTTATTATTATTTTGTAAAAGTGAATCTACAAGAGCGAAACAATTATAATACAATAAACAGTCTATGAAAAAAATTACTAATGAACAAGAATATTATTGTACTAGAATGCAATATTTTTAATAATTAAGAACTTATTTATTAATAAAGGTCAAAAATCGAGTAATATAATTATAATTTCTAGCAATCTAAGGAAAATTCTGAAAGTTATCTAGAGAATGGTAGACATAGAACTAAAAAGAAATAATTGATTGGAGAATACAAATCCCAAGATCATCTGCTTTTAACTGCAACTATTTTAATATATAGTCTGAATTCAGAGAACTCATTTACTGCTCCTACATGTATGAACAAAGTATTATTCATTTATTATAAGTTGTGGGAAGTCAGTTTTCAAAATTTATTATTTATTGTTAAAAAAAGAAGAAAAAGGACAATAATTAGATCAGTGAGAAACGTAGACTATAGACTCATACACCATGCAAAGCCAAAAAAATAAAATAAAAAGTCTTCATTTTTCTTACCCACTCTATACGCTAAACGCCGTTGCCGCACGGTAGTTTCATAAATGTACTTATATTTTTCTTTTAAAAAAAGGTTATTTGATTGTGAAACAAATAAGGGTTTCTACGTCTTCTATTATTTGTAGCTCGATTCATTGTTTTTACTTAACTTAGGAGTTAAGAGATAAAGAGACGATATTCAAACAAGTTAATCGGATTATCTAATAATGCAAGTATTCGATGTCTCTTCACATATTCGAACTTGACAACTAAAGCGTGAATATAATATGTGATCAATAGCAGACTCGGGTGTTTTCAGAAACTCGAATTGAGGGCATGCAACTTGACATTCAACGGACTTGCCATTGAATCATCTATTTCTATTTATTTTTTAGGGGGTTCAAAATGTATATATTTATAAAAATACAAAAAATTTACTTTTTTATATATATTGTGTATATTTGTATCGACTGTGTGAATCAAGAATTAAACCGAAACGAATTCCTATATTATGATAAAGAAATTTATGTTGGATCTAATTTAATTCCTCATAAGTTAAAAATTATTTGAGTTCACATAAAAAAGATAATCACATCCTTAATTAGCAAATGTGAAAACTCAACATATATAGCCTTTCTTGCAAACACATGTTAAGTAAATTTAAGTTATATTTTAGACCTGAAACTATTGATTAAAACGATAGCGAAATATTTTTAAATTTATAACAAGGTTTATATTCATTCATTTTCTCAATCTCTAATCTAAAATAATTTAAGTTTGATGTAAAGATGCTTTAAAAATATAATATACCTAATTTATTTATTTCTCATAATAAAAAAAATTCACAAATCACTAATTTTTAGGCAAACATAATAAATGTCGCTCATATACACTAATTTTCAAATTATATAGAAAAAATAACTCACACCAAACTTATCTGATGTGGCAAGCTCGAGCAAGGTCATCAACACTCAATAACGACTAGTTAAACTTGACATAGTGCATTATAAAATCAACGTTATTAATATGGTGTTACTGCAGAGATCCCAATGTCAATTAGGCGGCTTCCATTACCTTTCTAAACTCCTTATCACCAACAAGGTAAGAAGCATCCTTCCATTTTATTCTCTTTTAATTAAATTATCTCCTTATAAGTCAACTTTTCTAAAAAACCTAACTTTGTTACCACTTTCCTTCCTTTGTCTCTATCTCTCTTCTTGTTGGGTCAACCAACCACGTTATTAACATTAATTATATGTCCCCTCTTCATTTGATTCTCAATTTTTTTTATTCGTTAAATATTTATATTAAAGTCCGATTAAAAAATATTTTATTATTCCACGTAGAGTCATGTGATTCTTCTTTATAAAATGTAGTGCCATTCCCTCTTATAAACTCACCAACATTTTTCCAAAAGCACAAAGTTTTCTCTCTGAACACAAAAATGGAAGAATTAGATGCTCTTTATCCACCAGATTCTGATCTTGATCTAAGTTTCACAAGTTGTGCTTCCATTACTACCACCACAACGGATCGTACACTCAGTGCGAGAAGCAGTTTAGCTCGTAGTAGTCTTACATTGAGCTTCAACGATCGTCTTTCATGTACGTCCTCAACAAACAATCCATCTGCAGAAATCCCCAATTTCCACCGCCGTGCACACCGCCAGCACGACCCGAATTGGTCTGCTATTAAGGCGGTGACCACCCTTTCCTCCGATGGCTCTCTCCATCTCCGCCACCTTAAACTCCACCGCCTTGTTGGGTCTGGAAATCTCGGCCGAGTTTTCCTCTGCCGTCTCAGGGATTATGACCATGCTAATTTTGCCCTTAAAGTTATCGATCGGGATTCGCTTACAGCGAAGAAGATTTCTCATGTTCAAACGGAGGCGGAGATTCTCTCCTCTTTAGATCACCCTTTTCTACCTACACTTTATGCTCATTTAGAAGTTTCACATTATACTTGCTTGTTAATCGATTTCTGCCCTAATGGGGATCTCCATTCCTTGCTCCGAAAACAACCTGGAAACCGTTTACCGGTTGATTCAGTCAGATTCTACGCAGCTGAGGTACTCATAGCACTAGAGTATCTACATTCTCTCGGAATCGTTTACCGTGATTTGAAACCTGAAAACATACTTATTCGTGAAGATGGTCACATTATGCTTTCCGATTTTGATTTATGTTTTAAATCCGAAGTTTCCCCGAAATTAGATTTCACTACCCGTGTTCTAGAAGGATCTAGAAGAAGAAGAAACAGTTGTTACGGTGACCGGCAACGGGAAGAAACAGTGACCGAGTTCGTCTCAGAGCCAACATCTGCATTTTCTAGATCATGCGTCGGGACTCATGAATACTTAGCGCCGGAGCTCGTCAGCGGCGCCGGCCACGGCAATGGTGTAGACTGGTGGGCGTTTGGGGTGTTACTATACGAGTTGTTGTACGGTACGACACCGTTTAAAGGAAGCAGTAAAGAGTCTACCCTGCGCAATATAGCATCAAGCAAAGGAGTGAAGTTTTACGTAGACGAAACTCAAGGAGAAGAAGCTGAATTGAGAGATTTAATAGAGAAATTATTAGTTAAGGATCCAAGGAAGAGGCTAGGATGCACCAGGGGTGCAACGGATATTAAACGTCACCCATTCTTCGCCGGAATAAAATGGCCGTTGATCAGAACTTACCGGCCGCCGGAAGTACGGGGAATAACGATAAAAAGGACGAAGAGTAAGGCGCATGTGAGTCACGTGACTGGATTCTCGTCATCACCAAGAATAAGAAGGCGTTGTTTATGGAAAAAATTGGGTTATCTAATGAGGATTAAGGGATCTAAGTACAATTTAAACTCTAATCATAATTATTATTGTCATACTAATCACAAGGTTAGAAAATGTGCTTAAATCCATTTCAACCTTTTGTAAAACCATTTATATTGTTATAATTTTCCCCTTTTTTTTTGGGTATAAGTTTGTAAAGGAGGAGTTAGAGAACATCAATTTTGGGGGGAGATGTTCAAATTTTTTTCCTTTTCTTTGGTTTGTTTCCTTTTTAAAGGAAATTTCATACATATTTGTAAATGAAAAAGAAAGTTATGGAAGAAAAAGTATTTATTTAATTATGTATTATTTGCTTCTGTAATTCTTTTTTACATGTTTTCTCATTTTATAATGTATTAAATGCTTACATTAGGCTAATAGGTGCATGACAGATACGATAAGATATACGTAAATCTAACTACAATCGATATATAGAAAAGTTGTTCTGAGTAACAAACATAGCAATCAAAATGAATTTTCATTTCATTAAATTACATTTTTATATATATATATATATACATTGACAAAAATATCTTTGATTAAATATGATTGTCTCCTTTCCTTTTATTCCCCTAGCAACAATATAATCTTTTTTATAAGAAAAAGAAAAAAGAAAAGAGAAAAACAAAACTCCTAATTGCTTTCCATGTTGTAATTTGTTGTTGTTGGTGGACAAAAAATGTTTGGTAATTTTGTAAAATATGCCATTGAAAAGAAGAAAAAAAGTTCCTTAACATGATATATTCCTCACATATGCTAATGATGAGTTTGTAATATGATATTTTAATAATTAAATGAATGATTTTGTCCCATTCTTTAAAATTGTAAACTCCTGTTAGAAGTGAATATGCTCATCATAATAATGTCTTGATATTATTGATCAATCTTTATGTTATTGAAAACTTTACTTAGGCTGGAAAACATTATTATGACACATTGAAAATAAACAAATTCTTACCGTCTTTATTTATATCAAGTATAAATAAAAAAATGTACAACTTACATATATATTAAATGATGAAAAAAATCGAGGAATCATATTGATTGTTTTTTTTTTAAATACTTTATTTAAATATGTTTTTAATTATGCTATTATATTGATTCTTCTCCAAATATGAATAGTTAGACGTTCATTCAGTTTTTATGATAAAAGACTATAGATCATTGATCGTGACATTTACGAGTATCAGATAATTAACAGTTAAACGTGGGACATCAAACTAAACATGAACATATGATGGCATGTGGGAGCAATATGGTGTGGTTACCATAATTCATGCAAATTGCATATGGGTTTCCAAGGTTTTGACTTATAATTAGTCAGCAATATTTATTATTATTGTTAATTATTATTATTAATTAATATAATATGAAACCTAACTTTGGTGGATGGTAACTGGGAGAAGGGACCAAATTAATACTAGTAAAATAATTTAAGAATGGATAGAAACCTAATTATTCCAGAAGGTCTATAATTAATTATAAAGCCTATTTGCATATTAAATAAAAGTTGCTAGTACAGCTCAACATCGACCGACCACAAGAATTTTTTTGCAAAAAATTAAGTTACAAGTTGTGAGACATAACTATGGTCCCTTTACTAGAAAGTAACATTTATCATTAAATATTACTAACTATATAGTCAAAATTGCATATAAAAATTGGAAATTTTGTTTTCACATAAAAAGATAGTTTTTGCTTATATATAACAATTAGCTGATAAGATCTGATGTCCATTTACTATAATAGCCAACAATAGTCTAGACAAACGGCGCTACTATAAAGAGGTCTGATTGAATATCCGTTAATTCAAGCACAAAATATGTTCTTTATGGGAACCAAGAATGCCAACTCTGACTATATATTATAAGATTATTTCAAAAATAACCAAATGATTAGTAACTGAATACTAATTAGGCAGTTAATGTGTAGACAGATCATAAAAGTAGATATTATAATTTAGAAGATAAATAGATAAGAAATGCCAACTAATAATTATTAGAGGGGAAGTATGGCATCAAAGGTAGTTGTGTGTATACATGAATAATGAGATGCTTCTAACTCTACAACTTCAATTTTCTTTTTCTTTGGTCTATAGTTGGTTAATTAGAACCTGCAAAAAACAGAAAGTGGATGCATTTTAGTTTTCTATGGATGATAATCTGAATTTGTGTTGCTCCGACTCTAAAAAAAAATATCACTCGATGCATGTCAGATCTTCCGAAAGTAGTGTTTGATGATATTATGGAGAGTTCGCGCAACATTCTGAATCGAAATTACCAGACATGTATGGCAGGAATACAGAAATGCTACTAAAAAAATGTAGAAACTGGTTCTTGTTAGTAAACAGACATGTGATTTAGCTGATTTTTCTTTGTGAACATCCCTTCAGTATAGAATAATTCCTTTTATTATTAACTAAACTTAGAATTATGGACATGAAAAATGAGATATCCTTTCTTTTGGGGCTGCTATAAACACAGGTATCGATCAATATGTGTTTAAATGATATACAATCAATCATCTGTATAACTGTGTTAGTTGTTCCAATATTTGGATCCTATAGCGAAATGTTGTTATAGAGAATATGTGATGTAACATAACATGAAAAATCGGTTACATAGGAAACACGTCTGTTATAGTGAAATGTTGTTATAGAGGATGACTGTTATAGAGAGGTTTGACTGTAAAGATTGAAAGTTAACGAGGAAAATGTTTTTATGTACCTTTATTAGCATCAGCTTCACTCAGAGGAGTTTCGGAGGATGGTGATGGTGGTGAAGTGCACACAGATTCCCGGGCTTCAATCAGCATGGCGATGACTTCTCGCATAGTAGGCCTATTGGCAGGGGATGTATTGGTGCAGAACATAGCAATCTTGAGAACTAGAGACATCTCCTCTCTTGTTCTTGCAACACTAACATCCAGTCTTTTGTCAAAAAGCTCAGTTAGTGCCACTCCTTCATGAATTGATCTCCTTACACAAGTCACCAAATCGCCTCCCTGATCGAGGGGTTGAACTGGAGACCTACCAGTAATCAATTCCAGCAAAACAACGCCATAACTATAGATGTCGCATTTCTCTGTCACTTTCATTGTGTATGCATATTCTGAAAAAAAGAAAAAAAAAAAAGAACTTAGTTAGCTTCTGCATTTAAGTTATGCTAATATAGAGTACCGTTTTAAGTGCCTCAAGACCGGTCTTACCAGGGGCAATGTAGCCGTATGAACCAGCAACTGCGGACATGGATTTTGAGTAAGGGAAGTCAATTAGCTTTGCCAAGCCAAAGTCTCCAACATGTGCCTCAAGCAATTCGTCCAACAAAATGTTGTTCGATTTTATATCCCTGTGAATGATATGTGGCTTACAGTCATGGTGCAAATAGCATAGTCCCTCAGCAGCTCCTAAGGCAATTTTGTACCTGCTATTCCAGTTTAGTAAACTAGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-ACCATG-ATTCTG-CTAAT-A-A-AGGCGCTTCGCCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATTGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAGTGTAATTG............................................................AGTTCTGCTTTTACATGTAATAAAAACTCTTGGATCTGTTTTCTTGAGTCTTGTCCATTGTATGATTCTGGGATTTTCGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234034" ref_strand="+" ref_description="SGN-E234034 [cLEL-8-H6](-)">
      <seq>gtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactcttggatctgttttcttgagtcttgtctattgtatgattctgggattttcgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="28817" stop="8315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28517" g_stop="28307" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28306" i_stop="25832" i_length="2475">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25831" g_stop="25790" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="247" r_length="36" r_score="0.619"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25789" i_stop="22402" i_length="3388">
            <donor d_prob="0.999" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22401" g_stop="22387" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="262" r_length="15" r_score="0.800"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22386" i_stop="18930" i_length="3457">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18929" g_stop="18920" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="272" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18919" i_stop="17346" i_length="1574">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17345" g_stop="17332" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="286" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17331" i_stop="17272" i_length="60">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17271" g_stop="17176" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="382" r_length="96" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E234034" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28517" e_stop="28307"/>
          <exon e_start="25831" e_stop="25790"/>
          <exon e_start="22401" e_stop="22387"/>
          <exon e_start="18929" e_stop="18920"/>
          <exon e_start="17345" e_stop="17332"/>
          <exon e_start="17271" e_stop="17176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATTTTACCCTTTCCTAAATTTTATTTGTACGAAATGTTTTCTATATCGAACCACATTTTCCCCTTTAATACTCCTGTTCACATTTCTAAGGTTTCAAAATATAAGTTGAGCCATGCACAAATATATTCCATCTAAGGATTAAAATTAACCTAGCAAATCAGAGAGTATTTTGATTAAAATTAGTGCAAAATATTATTGATAATGTTTAATAACAAATAAGTAATATAAAGCTAATAAAAATAATTGCAAGTAAAATAACTTTCTTAAAAATGAATTTCTTCTTAATCACATCCAACAAACTGCAAGAAAATAAGTCGATTTATGCAAAATCGTCACTTATAATTTTTTCATGTTTTAAAAGTTGTACAACTATAGTCCTTGGGACCAACGAAGTACAAAATGTCTGTCTAACTTTTATAAAATTTTATATCGCGATCTAAATTATCATCATAAATTATTTAAATTTATTTTTAAAAAAATCATTTATCATAAAATAATAATTTACTAAATAATTGTCGCTATCGGCCCATTTACGAATCGTAAGGGCCCAATGATTAAATCTTGATATTTAGTGGTTGGCCCAATGATCTGGAGCCCATAGGGGGAGGGACATACAACGTCACATGCCTTTCATGTATATTCCTATAGCCAACATTATGTCATGTTGAGGTTATAATGCAAAGCCATACAAGTAGGCACATGTATTTGCAACAAATAAAATGTTATTTTGGGTTGGGGTGGGGAAGATAGAGATATAATGAAACTTGGAGTGATTATATACACATACATAGACATTTTAAAATAATGACGGTCGAGATAGAAATTTCACTGTGATATGATGTTCTTATAAAAGAGGATTCACACCATGTGTGGCTCTATCAATAATGAGCTTGCTTGGTATGAGGAATAAGAGATAACTGATCTCAAGATTGATTCCGAAATGAGTTTATTCGATATTTAACTGAGATAAAACCACTAAATAATTATCTCAAGATTGTAATGTTATTTTTTATGAAATCCATATTAAAATTGGAATATTCAATATAACGTATTCCCTAGTCAAATGAATTGTAAGAGTTTGGATACATACTAAATTGGAACCTACTAAATATACCCTAAGATTTAACCTTTGATAAGTTCTTTTCTTACCTTATTCACTTGTAAACTCTCGAATTGAAATCATACTAAATGTAGCAAATATCAGAAATATTGGAGGTTTGAATAATTTAGATTATGTATTTTTTTGTTTTATATTATTTAGCTCGTATTGACTTAACTCATTTCTTTAAAATGCTATTTATTGGGAGTGTATTACTAAATTAACTTTATTAATAATACTTTGAAATTCTAAAATTTACTATTACTATAATTATTTAATACTAAGAATAGAACCAAATATTTCTTTATATAATAAAAATCTCTTTATTTATCGAATCAGACTAGCAAAAGAAAACATCTTTTAATAGAACTAGGGGTCAAGTAATATAAACAATAATAGTATATTAATAAATCTAATAAATATTTTTTTTAAAAATTAATTCTTCAATATAAGTAACTCCTTTTTTAATATATCTAAACCCATAAGTTTCAAAAATATTTCAATGCATACATATACTTTTAGTTAAGATTAAAAATATTTAAAACTCTTTATTTTTAAATATGTATTTGAATGTTATTAAAATAAATAAATAGAAACCACGACAATAATTTAAATATCAATTTTAGGATGAAAAATAAGGGGCCACAATTTAGACACTTTGACTGAAATCACATTCTAATACAGTAATTGAGACTTGAGAGGGAAACATACTGAGAAAAAAGGGAAAAAAAAGAGAGGGAAACATCAATTTTTCAAGTTATTATTTTTATTGCCTAACAAAAATATATAAAAAAAAAAATAGGACTGGCAAATTCAGGTCTCTATCACGTGCCAATGGCAGGTTGGTACATTACTCTAATTATTTAAAAATTTATTTAATAATTTGATGAATTATTAAGCATTAACTAAATAGGTAAGGGGCCATTATTATTGACAAATAATGAGTGAAAGACTATTTTATTTTAGTTTATTTTGTACTATTATTATTTTTTTTCTTATTATTCTATTCATTTTTATTACAGAGATTGAAGCTGATAGTAGTGATAGTGTAGGGCCCAGTGTTCACCACGTGGCAGACAGCATCGTATAAACTTTCCAACTGGGTCCCATGATATTGGGCCCCATCACGTGGGTCCATTAACCTGGCCACTTTCTATATCTGGGGTTCTTCTCTAATTAAAAATTATTGAAGTTTAAGTAGTTTTTTTTTTTGTTAATTTTATTTAATTAATGAGTTCTTAGTTATATTCTTAATGGGTTAGTGGCACAAAGTCGTCTGCCTAATGACACTGGCGTTGGGTCCGGTAACTTTCGACAATAATTTTTCAATTAATACAAAAATTATTTTACCTATCGCTTGATATAGTAAATTATATTAAAATTATTTTTTATTGATGATTTGATTTGATTTGTTAACTATCTTTAATCTTGCTTATATGTATATTTATATTCATTTTATTATTAATATCATTATTTATATCTATGTACTAATTATACAAAGTAACACCAAATAAAATGTATTAATTATATGTAAATCTAAAATCTTATCAAATAAAGGTTTGAATAATATCACGACTACTATATATATTCTTTTGTTTCAATTAATTTGATTTGTTTTTTCTTTTAAAAAATTACGTATAACAATGAGTTTTCTAAATCAAATATAGACTAATTTTGTTTCATTTGCTCAATAAAACTCGTACGAAACCTTTATATTAAATATAAAATTATTGGTACAATTAATTGTCAATTATAGATACTCTAATTAAGATTTTATCAAGTGTTCAATCAATGATGGGGGAATTAGGAACAACTCCTAATTATGGCACCGTTCTATAAGGGATATTGTTTAGACTTTAGAGTCTATGATATATAAGCAAAAGATTTCCAAGATTTATTTGGGGGAAATGTGAAAATAATTAGTACTCAACATAATTAAAATATTTTTATAATGACAAAGTTTGTATGAGAAGATATATGTATACCACCGCATAGATTTTATTTAGTTGTTATAAATCTAACTATGTAAAATTAGAAGAATCGAATACGAAAAAGTAAACATTAGTAACATTTTCTAGTGAAGTTAGGACCATATAACTTATGGATACTACTTAAACATAATTTTTTACTTTTTAGTGTCTTGAGATTTACTACATGCATGACATCAATAATAACTACTATAAATATTTTATTTTTATAAATATTTATTTACACTATATGTGAATATTATGTAATTAAGAGAGAATTTTACAAAAGTGAACTATCATAATGAATGTCATTATTGATATAAGTAGAGTGTTACTAAAGAAAATATATAATGTGAAAAAATTAATTATGGAAAAAAGGAGAAAAAATAATTTTATAAGAAACTACAGTTATAAAAAAAAATCGACTGTATTTAAATTAAAAAATTGTAATTATATTCTATGAAAAGACTTCCTACCATTTTTTTTAAAATTTTTCTACCATGCAACTGCAAACATATTTCACGTGTGATTAAGATAACCATATGCTTTTGGCCATTTGATTTAATTTGCACCAATAATTTTTTTTTACACTATTTCGAAAGTACTACTCCATAATTGGAAAAGATGTATCAATAATTTCATTTTTATTGTACTGATTTGTGATTAATGCCGAAAAATCAACTCTATTTTTTAAGTATGATTAGATATGTCTGCATGACTTAGAAGAGTTTCACACTATTTAGAACTAAATTTTATCGAAAAATGGTTGATAACTGATAATAATCGTAAATAGCAATATAAATTATCATGAGATAATTGAATTCTCTTGTATTTTTAATTAGATATCTTATATTTGAATTCTTAGAAATAAAAAGAATATTCACTATCTCTAAAATGATGATAATATACAAATCCAAATTTAATAGTTAGAGTCGGGTGAATATAATTGCTCCATTTTCAATAGTTCATAAAATCAAATCCATGTATTATATGTCTATTCTACCTGGCTAACAATAAATATATTACAAAAAAAAATAATCAAATATTCAGTAAAATCTCACTAAATAAAATTTATTGAAAATAAAATGTACGTAAATTTTATTATTATTTTGTAAAAGTGAATCTACAAGAGCGAAACAATTATAATACAATAAACAGTCTATGAAAAAAATTACTAATGAACAAGAATATTATTGTACTAGAATGCAATATTTTTAATAATTAAGAACTTATTTATTAATAAAGGTCAAAAATCGAGTAATATAATTATAATTTCTAGCAATCTAAGGAAAATTCTGAAAGTTATCTAGAGAATGGTAGACATAGAACTAAAAAGAAATAATTGATTGGAGAATACAAATCCCAAGATCATCTGCTTTTAACTGCAACTATTTTAATATATAGTCTGAATTCAGAGAACTCATTTACTGCTCCTACATGTATGAACAAAGTATTATTCATTTATTATAAGTTGTGGGAAGTCAGTTTTCAAAATTTATTATTTATTGTTAAAAAAAGAAGAAAAAGGACAATAATTAGATCAGTGAGAAACGTAGACTATAGACTCATACACCATGCAAAGCCAAAAAAATAAAATAAAAAGTCTTCATTTTTCTTACCCACTCTATACGCTAAACGCCGTTGCCGCACGGTAGTTTCATAAATGTACTTATATTTTTCTTTTAAAAAAAGGTTATTTGATTGTGAAACAAATAAGGGTTTCTACGTCTTCTATTATTTGTAGCTCGATTCATTGTTTTTACTTAACTTAGGAGTTAAGAGATAAAGAGACGATATTCAAACAAGTTAATCGGATTATCTAATAATGCAAGTATTCGATGTCTCTTCACATATTCGAACTTGACAACTAAAGCGTGAATATAATATGTGATCAATAGCAGACTCGGGTGTTTTCAGAAACTCGAATTGAGGGCATGCAACTTGACATTCAACGGACTTGCCATTGAATCATCTATTTCTATTTATTTTTTAGGGGGTTCAAAATGTATATATTTATAAAAATACAAAAAATTTACTTTTTTATATATATTGTGTATATTTGTATCGACTGTGTGAATCAAGAATTAAACCGAAACGAATTCCTATATTATGATAAAGAAATTTATGTTGGATCTAATTTAATTCCTCATAAGTTAAAAATTATTTGAGTTCACATAAAAAAGATAATCACATCCTTAATTAGCAAATGTGAAAACTCAACATATATAGCCTTTCTTGCAAACACATGTTAAGTAAATTTAAGTTATATTTTAGACCTGAAACTATTGATTAAAACGATAGCGAAATATTTTTAAATTTATAACAAGGTTTATATTCATTCATTTTCTCAATCTCTAATCTAAAATAATTTAAGTTTGATGTAAAGATGCTTTAAAAATATAATATACCTAATTTATTTATTTCTCATAATAAAAAAAATTCACAAATCACTAATTTTTAGGCAAACATAATAAATGTCGCTCATATACACTAATTTTCAAATTATATAGAAAAAATAACTCACACCAAACTTATCTGATGTGGCAAGCTCGAGCAAGGTCATCAACACTCAATAACGACTAGTTAAACTTGACATAGTGCATTATAAAATCAACGTTATTAATATGGTGTTACTGCAGAGATCCCAATGTCAATTAGGCGGCTTCCATTACCTTTCTAAACTCCTTATCACCAACAAGGTAAGAAGCATCCTTCCATTTTATTCTCTTTTAATTAAATTATCTCCTTATAAGTCAACTTTTCTAAAAAACCTAACTTTGTTACCACTTTCCTTCCTTTGTCTCTATCTCTCTTCTTGTTGGGTCAACCAACCACGTTATTAACATTAATTATATGTCCCCTCTTCATTTGATTCTCAATTTTTTTTATTCGTTAAATATTTATATTAAAGTCCGATTAAAAAATATTTTATTATTCCACGTAGAGTCATGTGATTCTTCTTTATAAAATGTAGTGCCATTCCCTCTTATAAACTCACCAACATTTTTCCAAAAGCACAAAGTTTTCTCTCTGAACACAAAAATGGAAGAATTAGATGCTCTTTATCCACCAGATTCTGATCTTGATCTAAGTTTCACAAGTTGTGCTTCCATTACTACCACCACAACGGATCGTACACTCAGTGCGAGAAGCAGTTTAGCTCGTAGTAGTCTTACATTGAGCTTCAACGATCGTCTTTCATGTACGTCCTCAACAAACAATCCATCTGCAGAAATCCCCAATTTCCACCGCCGTGCACACCGCCAGCACGACCCGAATTGGTCTGCTATTAAGGCGGTGACCACCCTTTCCTCCGATGGCTCTCTCCATCTCCGCCACCTTAAACTCCACCGCCTTGTTGGGTCTGGAAATCTCGGCCGAGTTTTCCTCTGCCGTCTCAGGGATTATGACCATGCTAATTTTGCCCTTAAAGTTATCGATCGGGATTCGCTTACAGCGAAGAAGATTTCTCATGTTCAAACGGAGGCGGAGATTCTCTCCTCTTTAGATCACCCTTTTCTACCTACACTTTATGCTCATTTAGAAGTTTCACATTATACTTGCTTGTTAATCGATTTCTGCCCTAATGGGGATCTCCATTCCTTGCTCCGAAAACAACCTGGAAACCGTTTACCGGTTGATTCAGTCAGATTCTACGCAGCTGAGGTACTCATAGCACTAGAGTATCTACATTCTCTCGGAATCGTTTACCGTGATTTGAAACCTGAAAACATACTTATTCGTGAAGATGGTCACATTATGCTTTCCGATTTTGATTTATGTTTTAAATCCGAAGTTTCCCCGAAATTAGATTTCACTACCCGTGTTCTAGAAGGATCTAGAAGAAGAAGAAACAGTTGTTACGGTGACCGGCAACGGGAAGAAACAGTGACCGAGTTCGTCTCAGAGCCAACATCTGCATTTTCTAGATCATGCGTCGGGACTCATGAATACTTAGCGCCGGAGCTCGTCAGCGGCGCCGGCCACGGCAATGGTGTAGACTGGTGGGCGTTTGGGGTGTTACTATACGAGTTGTTGTACGGTACGACACCGTTTAAAGGAAGCAGTAAAGAGTCTACCCTGCGCAATATAGCATCAAGCAAAGGAGTGAAGTTTTACGTAGACGAAACTCAAGGAGAAGAAGCTGAATTGAGAGATTTAATAGAGAAATTATTAGTTAAGGATCCAAGGAAGAGGCTAGGATGCACCAGGGGTGCAACGGATATTAAACGTCACCCATTCTTCGCCGGAATAAAATGGCCGTTGATCAGAACTTACCGGCCGCCGGAAGTACGGGGAATAACGATAAAAAGGACGAAGAGTAAGGCGCATGTGAGTCACGTGACTGGATTCTCGTCATCACCAAGAATAAGAAGGCGTTGTTTATGGAAAAAATTGGGTTATCTAATGAGGATTAAGGGATCTAAGTACAATTTAAACTCTAATCATAATTATTATTGTCATACTAATCACAAGGTTAGAAAATGTGCTTAAATCCATTTCAACCTTTTGTAAAACCATTTATATTGTTATAATTTTCCCCTTTTTTTTTGGGTATAAGTTTGTAAAGGAGGAGTTAGAGAACATCAATTTTGGGGGGAGATGTTCAAATTTTTTTCCTTTTCTTTGGTTTGTTTCCTTTTTAAAGGAAATTTCATACATATTTGTAAATGAAAAAGAAAGTTATGGAAGAAAAAGTATTTATTTAATTATGTATTATTTGCTTCTGTAATTCTTTTTTACATGTTTTCTCATTTTATAATGTATTAAATGCTTACATTAGGCTAATAGGTGCATGACAGATACGATAAGATATACGTAAATCTAACTACAATCGATATATAGAAAAGTTGTTCTGAGTAACAAACATAGCAATCAAAATGAATTTTCATTTCATTAAATTACATTTTTATATATATATATATATACATTGACAAAAATATCTTTGATTAAATATGATTGTCTCCTTTCCTTTTATTCCCCTAGCAACAATATAATCTTTTTTATAAGAAAAAGAAAAAAGAAAAGAGAAAAACAAAACTCCTAATTGCTTTCCATGTTGTAATTTGTTGTTGTTGGTGGACAAAAAATGTTTGGTAATTTTGTAAAATATGCCATTGAAAAGAAGAAAAAAAGTTCCTTAACATGATATATTCCTCACATATGCTAATGATGAGTTTGTAATATGATATTTTAATAATTAAATGAATGATTTTGTCCCATTCTTTAAAATTGTAAACTCCTGTTAGAAGTGAATATGCTCATCATAATAATGTCTTGATATTATTGATCAATCTTTATGTTATTGAAAACTTTACTTAGGCTGGAAAACATTATTATGACACATTGAAAATAAACAAATTCTTACCGTCTTTATTTATATCAAGTATAAATAAAAAAATGTACAACTTACATATATATTAAATGATGAAAAAAATCGAGGAATCATATTGATTGTTTTTTTTTTAAATACTTTATTTAAATATGTTTTTAATTATGCTATTATATTGATTCTTCTCCAAATATGAATAGTTAGACGTTCATTCAGTTTTTATGATAAAAGACTATAGATCATTGATCGTGACATTTACGAGTATCAGATAATTAACAGTTAAACGTGGGACATCAAACTAAACATGAACATATGATGGCATGTGGGAGCAATATGGTGTGGTTACCATAATTCATGCAAATTGCATATGGGTTTCCAAGGTTTTGACTTATAATTAGTCAGCAATATTTATTATTATTGTTAATTATTATTATTAATTAATATAATATGAAACCTAACTTTGGTGGATGGTAACTGGGAGAAGGGACCAAATTAATACTAGTAAAATAATTTAAGAATGGATAGAAACCTAATTATTCCAGAAGGTCTATAATTAATTATAAAGCCTATTTGCATATTAAATAAAAGTTGCTAGTACAGCTCAACATCGACCGACCACAAGAATTTTTTTGCAAAAAATTAAGTTACAAGTTGTGAGACATAACTATGGTCCCTTTACTAGAAAGTAACATTTATCATTAAATATTACTAACTATATAGTCAAAATTGCATATAAAAATTGGAAATTTTGTTTTCACATAAAAAGATAGTTTTTGCTTATATATAACAATTAGCTGATAAGATCTGATGTCCATTTACTATAATAGCCAACAATAGTCTAGACAAACGGCGCTACTATAAAGAGGTCTGATTGAATATCCGTTAATTCAAGCACAAAATATGTTCTTTATGGGAACCAAGAATGCCAACTCTGACTATATATTATAAGATTATTTCAAAAATAACCAAATGATTAGTAACTGAATACTAATTAGGCAGTTAATGTGTAGACAGATCATAAAAGTAGATATTATAATTTAGAAGATAAATAGATAAGAAATGCCAACTAATAATTATTAGAGGGGAAGTATGGCATCAAAGGTAGTTGTGTGTATACATGAATAATGAGATGCTTCTAACTCTACAACTTCAATTTTCTTTTTCTTTGGTCTATAGTTGGTTAATTAGAACCTGCAAAAAACAGAAAGTGGATGCATTTTAGTTTTCTATGGATGATAATCTGAATTTGTGTTGCTCCGACTCTAAAAAAAAATATCACTCGATGCATGTCAGATCTTCCGAAAGTAGTGTTTGATGATATTATGGAGAGTTCGCGCAACATTCTGAATCGAAATTACCAGACATGTATGGCAGGAATACAGAAATGCTACTAAAAAAATGTAGAAACTGGTTCTTGTTAGTAAACAGACATGTGATTTAGCTGATTTTTCTTTGTGAACATCCCTTCAGTATAGAATAATTCCTTTTATTATTAACTAAACTTAGAATTATGGACATGAAAAATGAGATATCCTTTCTTTTGGGGCTGCTATAAACACAGGTATCGATCAATATGTGTTTAAATGATATACAATCAATCATCTGTATAACTGTGTTAGTTGTTCCAATATTTGGATCCTATAGCGAAATGTTGTTATAGAGAATATGTGATGTAACATAACATGAAAAATCGGTTACATAGGAAACACGTCTGTTATAGTGAAATGTTGTTATAGAGGATGACTGTTATAGAGAGGTTTGACTGTAAAGATTGAAAGTTAACGAGGAAAATGTTTTTATGTACCTTTATTAGCATCAGCTTCACTCAGAGGAGTTTCGGAGGATGGTGATGGTGGTGAAGTGCACACAGATTCCCGGGCTTCAATCAGCATGGCGATGACTTCTCGCATAGTAGGCCTATTGGCAGGGGATGTATTGGTGCAGAACATAGCAATCTTGAGAACTAGAGACATCTCCTCTCTTGTTCTTGCAACACTAACATCCAGTCTTTTGTCAAAAAGCTCAGTTAGTGCCACTCCTTCATGAATTGATCTCCTTACACAAGTCACCAAATCGCCTCCCTGATCGAGGGGTTGAACTGGAGACCTACCAGTAATCAATTCCAGCAAAACAACGCCATAACTATAGATGTCGCATTTCTCTGTCACTTTCATTGTGTATGCATATTCTGAAAAAAAGAAAAAAAAAAAAGAACTTAGTTAGCTTCTGCATTTAAGTTATGCTAATATAGAGTACCGTTTTAAGTGCCTCAAGACCGGTCTTACCAGGGGCAATGTAGCCGTATGAACCAGCAACTGCGGACATGGATTTTGAGTAAGGGAAGTCAATTAGCTTTGCCAAGCCAAAGTCTCCAACATGTGCCTCAAGCAATTCGTCCAACAAAATGTTGTTCGATTTTATATCCCTGTGAATGATATGTGGCTTACAGTCATGGTGCAAATAGCATAGTCCCTCAGCAGCTCCTAAGGCAATTTTGTACCTGCTATTCCAGTTTAGTAAACTAGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-ACCATG-ATTCTG-CTAAT-A-A-AGGCGCTTCGCCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATTGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAGTGTAATTG............................................................AGTTCTGCTTTTACATGTAATAAAAACTCTTGGATCTGTTTTCTTGAGTCTTGTCTATTGTATGATTCTGGGATTTTCGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230879" ref_strand="+" ref_description="SGN-E230879 [cLEL-35-C13](-)">
      <seq>tgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactcttggatctgttttcttgagtcttgtctattgtctcattctgggattttccaaaccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="28816" stop="8315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28516" g_stop="28307" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28306" i_stop="25832" i_length="2475">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25831" g_stop="25790" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="246" r_length="36" r_score="0.619"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25789" i_stop="22402" i_length="3388">
            <donor d_prob="0.999" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22401" g_stop="22387" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="261" r_length="15" r_score="0.800"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22386" i_stop="18930" i_length="3457">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18929" g_stop="18920" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="271" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18919" i_stop="17346" i_length="1574">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17345" g_stop="17332" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="285" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17331" i_stop="17272" i_length="60">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17271" g_stop="17176" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="381" r_length="96" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E230879" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28516" e_stop="28307"/>
          <exon e_start="25831" e_stop="25790"/>
          <exon e_start="22401" e_stop="22387"/>
          <exon e_start="18929" e_stop="18920"/>
          <exon e_start="17345" e_stop="17332"/>
          <exon e_start="17271" e_stop="17176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATTTTACCCTTTCCTAAATTTTATTTGTACGAAATGTTTTCTATATCGAACCACATTTTCCCCTTTAATACTCCTGTTCACATTTCTAAGGTTTCAAAATATAAGTTGAGCCATGCACAAATATATTCCATCTAAGGATTAAAATTAACCTAGCAAATCAGAGAGTATTTTGATTAAAATTAGTGCAAAATATTATTGATAATGTTTAATAACAAATAAGTAATATAAAGCTAATAAAAATAATTGCAAGTAAAATAACTTTCTTAAAAATGAATTTCTTCTTAATCACATCCAACAAACTGCAAGAAAATAAGTCGATTTATGCAAAATCGTCACTTATAATTTTTTCATGTTTTAAAAGTTGTACAACTATAGTCCTTGGGACCAACGAAGTACAAAATGTCTGTCTAACTTTTATAAAATTTTATATCGCGATCTAAATTATCATCATAAATTATTTAAATTTATTTTTAAAAAAATCATTTATCATAAAATAATAATTTACTAAATAATTGTCGCTATCGGCCCATTTACGAATCGTAAGGGCCCAATGATTAAATCTTGATATTTAGTGGTTGGCCCAATGATCTGGAGCCCATAGGGGGAGGGACATACAACGTCACATGCCTTTCATGTATATTCCTATAGCCAACATTATGTCATGTTGAGGTTATAATGCAAAGCCATACAAGTAGGCACATGTATTTGCAACAAATAAAATGTTATTTTGGGTTGGGGTGGGGAAGATAGAGATATAATGAAACTTGGAGTGATTATATACACATACATAGACATTTTAAAATAATGACGGTCGAGATAGAAATTTCACTGTGATATGATGTTCTTATAAAAGAGGATTCACACCATGTGTGGCTCTATCAATAATGAGCTTGCTTGGTATGAGGAATAAGAGATAACTGATCTCAAGATTGATTCCGAAATGAGTTTATTCGATATTTAACTGAGATAAAACCACTAAATAATTATCTCAAGATTGTAATGTTATTTTTTATGAAATCCATATTAAAATTGGAATATTCAATATAACGTATTCCCTAGTCAAATGAATTGTAAGAGTTTGGATACATACTAAATTGGAACCTACTAAATATACCCTAAGATTTAACCTTTGATAAGTTCTTTTCTTACCTTATTCACTTGTAAACTCTCGAATTGAAATCATACTAAATGTAGCAAATATCAGAAATATTGGAGGTTTGAATAATTTAGATTATGTATTTTTTTGTTTTATATTATTTAGCTCGTATTGACTTAACTCATTTCTTTAAAATGCTATTTATTGGGAGTGTATTACTAAATTAACTTTATTAATAATACTTTGAAATTCTAAAATTTACTATTACTATAATTATTTAATACTAAGAATAGAACCAAATATTTCTTTATATAATAAAAATCTCTTTATTTATCGAATCAGACTAGCAAAAGAAAACATCTTTTAATAGAACTAGGGGTCAAGTAATATAAACAATAATAGTATATTAATAAATCTAATAAATATTTTTTTTAAAAATTAATTCTTCAATATAAGTAACTCCTTTTTTAATATATCTAAACCCATAAGTTTCAAAAATATTTCAATGCATACATATACTTTTAGTTAAGATTAAAAATATTTAAAACTCTTTATTTTTAAATATGTATTTGAATGTTATTAAAATAAATAAATAGAAACCACGACAATAATTTAAATATCAATTTTAGGATGAAAAATAAGGGGCCACAATTTAGACACTTTGACTGAAATCACATTCTAATACAGTAATTGAGACTTGAGAGGGAAACATACTGAGAAAAAAGGGAAAAAAAAGAGAGGGAAACATCAATTTTTCAAGTTATTATTTTTATTGCCTAACAAAAATATATAAAAAAAAAAATAGGACTGGCAAATTCAGGTCTCTATCACGTGCCAATGGCAGGTTGGTACATTACTCTAATTATTTAAAAATTTATTTAATAATTTGATGAATTATTAAGCATTAACTAAATAGGTAAGGGGCCATTATTATTGACAAATAATGAGTGAAAGACTATTTTATTTTAGTTTATTTTGTACTATTATTATTTTTTTTCTTATTATTCTATTCATTTTTATTACAGAGATTGAAGCTGATAGTAGTGATAGTGTAGGGCCCAGTGTTCACCACGTGGCAGACAGCATCGTATAAACTTTCCAACTGGGTCCCATGATATTGGGCCCCATCACGTGGGTCCATTAACCTGGCCACTTTCTATATCTGGGGTTCTTCTCTAATTAAAAATTATTGAAGTTTAAGTAGTTTTTTTTTTTGTTAATTTTATTTAATTAATGAGTTCTTAGTTATATTCTTAATGGGTTAGTGGCACAAAGTCGTCTGCCTAATGACACTGGCGTTGGGTCCGGTAACTTTCGACAATAATTTTTCAATTAATACAAAAATTATTTTACCTATCGCTTGATATAGTAAATTATATTAAAATTATTTTTTATTGATGATTTGATTTGATTTGTTAACTATCTTTAATCTTGCTTATATGTATATTTATATTCATTTTATTATTAATATCATTATTTATATCTATGTACTAATTATACAAAGTAACACCAAATAAAATGTATTAATTATATGTAAATCTAAAATCTTATCAAATAAAGGTTTGAATAATATCACGACTACTATATATATTCTTTTGTTTCAATTAATTTGATTTGTTTTTTCTTTTAAAAAATTACGTATAACAATGAGTTTTCTAAATCAAATATAGACTAATTTTGTTTCATTTGCTCAATAAAACTCGTACGAAACCTTTATATTAAATATAAAATTATTGGTACAATTAATTGTCAATTATAGATACTCTAATTAAGATTTTATCAAGTGTTCAATCAATGATGGGGGAATTAGGAACAACTCCTAATTATGGCACCGTTCTATAAGGGATATTGTTTAGACTTTAGAGTCTATGATATATAAGCAAAAGATTTCCAAGATTTATTTGGGGGAAATGTGAAAATAATTAGTACTCAACATAATTAAAATATTTTTATAATGACAAAGTTTGTATGAGAAGATATATGTATACCACCGCATAGATTTTATTTAGTTGTTATAAATCTAACTATGTAAAATTAGAAGAATCGAATACGAAAAAGTAAACATTAGTAACATTTTCTAGTGAAGTTAGGACCATATAACTTATGGATACTACTTAAACATAATTTTTTACTTTTTAGTGTCTTGAGATTTACTACATGCATGACATCAATAATAACTACTATAAATATTTTATTTTTATAAATATTTATTTACACTATATGTGAATATTATGTAATTAAGAGAGAATTTTACAAAAGTGAACTATCATAATGAATGTCATTATTGATATAAGTAGAGTGTTACTAAAGAAAATATATAATGTGAAAAAATTAATTATGGAAAAAAGGAGAAAAAATAATTTTATAAGAAACTACAGTTATAAAAAAAAATCGACTGTATTTAAATTAAAAAATTGTAATTATATTCTATGAAAAGACTTCCTACCATTTTTTTTAAAATTTTTCTACCATGCAACTGCAAACATATTTCACGTGTGATTAAGATAACCATATGCTTTTGGCCATTTGATTTAATTTGCACCAATAATTTTTTTTTACACTATTTCGAAAGTACTACTCCATAATTGGAAAAGATGTATCAATAATTTCATTTTTATTGTACTGATTTGTGATTAATGCCGAAAAATCAACTCTATTTTTTAAGTATGATTAGATATGTCTGCATGACTTAGAAGAGTTTCACACTATTTAGAACTAAATTTTATCGAAAAATGGTTGATAACTGATAATAATCGTAAATAGCAATATAAATTATCATGAGATAATTGAATTCTCTTGTATTTTTAATTAGATATCTTATATTTGAATTCTTAGAAATAAAAAGAATATTCACTATCTCTAAAATGATGATAATATACAAATCCAAATTTAATAGTTAGAGTCGGGTGAATATAATTGCTCCATTTTCAATAGTTCATAAAATCAAATCCATGTATTATATGTCTATTCTACCTGGCTAACAATAAATATATTACAAAAAAAAATAATCAAATATTCAGTAAAATCTCACTAAATAAAATTTATTGAAAATAAAATGTACGTAAATTTTATTATTATTTTGTAAAAGTGAATCTACAAGAGCGAAACAATTATAATACAATAAACAGTCTATGAAAAAAATTACTAATGAACAAGAATATTATTGTACTAGAATGCAATATTTTTAATAATTAAGAACTTATTTATTAATAAAGGTCAAAAATCGAGTAATATAATTATAATTTCTAGCAATCTAAGGAAAATTCTGAAAGTTATCTAGAGAATGGTAGACATAGAACTAAAAAGAAATAATTGATTGGAGAATACAAATCCCAAGATCATCTGCTTTTAACTGCAACTATTTTAATATATAGTCTGAATTCAGAGAACTCATTTACTGCTCCTACATGTATGAACAAAGTATTATTCATTTATTATAAGTTGTGGGAAGTCAGTTTTCAAAATTTATTATTTATTGTTAAAAAAAGAAGAAAAAGGACAATAATTAGATCAGTGAGAAACGTAGACTATAGACTCATACACCATGCAAAGCCAAAAAAATAAAATAAAAAGTCTTCATTTTTCTTACCCACTCTATACGCTAAACGCCGTTGCCGCACGGTAGTTTCATAAATGTACTTATATTTTTCTTTTAAAAAAAGGTTATTTGATTGTGAAACAAATAAGGGTTTCTACGTCTTCTATTATTTGTAGCTCGATTCATTGTTTTTACTTAACTTAGGAGTTAAGAGATAAAGAGACGATATTCAAACAAGTTAATCGGATTATCTAATAATGCAAGTATTCGATGTCTCTTCACATATTCGAACTTGACAACTAAAGCGTGAATATAATATGTGATCAATAGCAGACTCGGGTGTTTTCAGAAACTCGAATTGAGGGCATGCAACTTGACATTCAACGGACTTGCCATTGAATCATCTATTTCTATTTATTTTTTAGGGGGTTCAAAATGTATATATTTATAAAAATACAAAAAATTTACTTTTTTATATATATTGTGTATATTTGTATCGACTGTGTGAATCAAGAATTAAACCGAAACGAATTCCTATATTATGATAAAGAAATTTATGTTGGATCTAATTTAATTCCTCATAAGTTAAAAATTATTTGAGTTCACATAAAAAAGATAATCACATCCTTAATTAGCAAATGTGAAAACTCAACATATATAGCCTTTCTTGCAAACACATGTTAAGTAAATTTAAGTTATATTTTAGACCTGAAACTATTGATTAAAACGATAGCGAAATATTTTTAAATTTATAACAAGGTTTATATTCATTCATTTTCTCAATCTCTAATCTAAAATAATTTAAGTTTGATGTAAAGATGCTTTAAAAATATAATATACCTAATTTATTTATTTCTCATAATAAAAAAAATTCACAAATCACTAATTTTTAGGCAAACATAATAAATGTCGCTCATATACACTAATTTTCAAATTATATAGAAAAAATAACTCACACCAAACTTATCTGATGTGGCAAGCTCGAGCAAGGTCATCAACACTCAATAACGACTAGTTAAACTTGACATAGTGCATTATAAAATCAACGTTATTAATATGGTGTTACTGCAGAGATCCCAATGTCAATTAGGCGGCTTCCATTACCTTTCTAAACTCCTTATCACCAACAAGGTAAGAAGCATCCTTCCATTTTATTCTCTTTTAATTAAATTATCTCCTTATAAGTCAACTTTTCTAAAAAACCTAACTTTGTTACCACTTTCCTTCCTTTGTCTCTATCTCTCTTCTTGTTGGGTCAACCAACCACGTTATTAACATTAATTATATGTCCCCTCTTCATTTGATTCTCAATTTTTTTTATTCGTTAAATATTTATATTAAAGTCCGATTAAAAAATATTTTATTATTCCACGTAGAGTCATGTGATTCTTCTTTATAAAATGTAGTGCCATTCCCTCTTATAAACTCACCAACATTTTTCCAAAAGCACAAAGTTTTCTCTCTGAACACAAAAATGGAAGAATTAGATGCTCTTTATCCACCAGATTCTGATCTTGATCTAAGTTTCACAAGTTGTGCTTCCATTACTACCACCACAACGGATCGTACACTCAGTGCGAGAAGCAGTTTAGCTCGTAGTAGTCTTACATTGAGCTTCAACGATCGTCTTTCATGTACGTCCTCAACAAACAATCCATCTGCAGAAATCCCCAATTTCCACCGCCGTGCACACCGCCAGCACGACCCGAATTGGTCTGCTATTAAGGCGGTGACCACCCTTTCCTCCGATGGCTCTCTCCATCTCCGCCACCTTAAACTCCACCGCCTTGTTGGGTCTGGAAATCTCGGCCGAGTTTTCCTCTGCCGTCTCAGGGATTATGACCATGCTAATTTTGCCCTTAAAGTTATCGATCGGGATTCGCTTACAGCGAAGAAGATTTCTCATGTTCAAACGGAGGCGGAGATTCTCTCCTCTTTAGATCACCCTTTTCTACCTACACTTTATGCTCATTTAGAAGTTTCACATTATACTTGCTTGTTAATCGATTTCTGCCCTAATGGGGATCTCCATTCCTTGCTCCGAAAACAACCTGGAAACCGTTTACCGGTTGATTCAGTCAGATTCTACGCAGCTGAGGTACTCATAGCACTAGAGTATCTACATTCTCTCGGAATCGTTTACCGTGATTTGAAACCTGAAAACATACTTATTCGTGAAGATGGTCACATTATGCTTTCCGATTTTGATTTATGTTTTAAATCCGAAGTTTCCCCGAAATTAGATTTCACTACCCGTGTTCTAGAAGGATCTAGAAGAAGAAGAAACAGTTGTTACGGTGACCGGCAACGGGAAGAAACAGTGACCGAGTTCGTCTCAGAGCCAACATCTGCATTTTCTAGATCATGCGTCGGGACTCATGAATACTTAGCGCCGGAGCTCGTCAGCGGCGCCGGCCACGGCAATGGTGTAGACTGGTGGGCGTTTGGGGTGTTACTATACGAGTTGTTGTACGGTACGACACCGTTTAAAGGAAGCAGTAAAGAGTCTACCCTGCGCAATATAGCATCAAGCAAAGGAGTGAAGTTTTACGTAGACGAAACTCAAGGAGAAGAAGCTGAATTGAGAGATTTAATAGAGAAATTATTAGTTAAGGATCCAAGGAAGAGGCTAGGATGCACCAGGGGTGCAACGGATATTAAACGTCACCCATTCTTCGCCGGAATAAAATGGCCGTTGATCAGAACTTACCGGCCGCCGGAAGTACGGGGAATAACGATAAAAAGGACGAAGAGTAAGGCGCATGTGAGTCACGTGACTGGATTCTCGTCATCACCAAGAATAAGAAGGCGTTGTTTATGGAAAAAATTGGGTTATCTAATGAGGATTAAGGGATCTAAGTACAATTTAAACTCTAATCATAATTATTATTGTCATACTAATCACAAGGTTAGAAAATGTGCTTAAATCCATTTCAACCTTTTGTAAAACCATTTATATTGTTATAATTTTCCCCTTTTTTTTTGGGTATAAGTTTGTAAAGGAGGAGTTAGAGAACATCAATTTTGGGGGGAGATGTTCAAATTTTTTTCCTTTTCTTTGGTTTGTTTCCTTTTTAAAGGAAATTTCATACATATTTGTAAATGAAAAAGAAAGTTATGGAAGAAAAAGTATTTATTTAATTATGTATTATTTGCTTCTGTAATTCTTTTTTACATGTTTTCTCATTTTATAATGTATTAAATGCTTACATTAGGCTAATAGGTGCATGACAGATACGATAAGATATACGTAAATCTAACTACAATCGATATATAGAAAAGTTGTTCTGAGTAACAAACATAGCAATCAAAATGAATTTTCATTTCATTAAATTACATTTTTATATATATATATATATACATTGACAAAAATATCTTTGATTAAATATGATTGTCTCCTTTCCTTTTATTCCCCTAGCAACAATATAATCTTTTTTATAAGAAAAAGAAAAAAGAAAAGAGAAAAACAAAACTCCTAATTGCTTTCCATGTTGTAATTTGTTGTTGTTGGTGGACAAAAAATGTTTGGTAATTTTGTAAAATATGCCATTGAAAAGAAGAAAAAAAGTTCCTTAACATGATATATTCCTCACATATGCTAATGATGAGTTTGTAATATGATATTTTAATAATTAAATGAATGATTTTGTCCCATTCTTTAAAATTGTAAACTCCTGTTAGAAGTGAATATGCTCATCATAATAATGTCTTGATATTATTGATCAATCTTTATGTTATTGAAAACTTTACTTAGGCTGGAAAACATTATTATGACACATTGAAAATAAACAAATTCTTACCGTCTTTATTTATATCAAGTATAAATAAAAAAATGTACAACTTACATATATATTAAATGATGAAAAAAATCGAGGAATCATATTGATTGTTTTTTTTTTAAATACTTTATTTAAATATGTTTTTAATTATGCTATTATATTGATTCTTCTCCAAATATGAATAGTTAGACGTTCATTCAGTTTTTATGATAAAAGACTATAGATCATTGATCGTGACATTTACGAGTATCAGATAATTAACAGTTAAACGTGGGACATCAAACTAAACATGAACATATGATGGCATGTGGGAGCAATATGGTGTGGTTACCATAATTCATGCAAATTGCATATGGGTTTCCAAGGTTTTGACTTATAATTAGTCAGCAATATTTATTATTATTGTTAATTATTATTATTAATTAATATAATATGAAACCTAACTTTGGTGGATGGTAACTGGGAGAAGGGACCAAATTAATACTAGTAAAATAATTTAAGAATGGATAGAAACCTAATTATTCCAGAAGGTCTATAATTAATTATAAAGCCTATTTGCATATTAAATAAAAGTTGCTAGTACAGCTCAACATCGACCGACCACAAGAATTTTTTTGCAAAAAATTAAGTTACAAGTTGTGAGACATAACTATGGTCCCTTTACTAGAAAGTAACATTTATCATTAAATATTACTAACTATATAGTCAAAATTGCATATAAAAATTGGAAATTTTGTTTTCACATAAAAAGATAGTTTTTGCTTATATATAACAATTAGCTGATAAGATCTGATGTCCATTTACTATAATAGCCAACAATAGTCTAGACAAACGGCGCTACTATAAAGAGGTCTGATTGAATATCCGTTAATTCAAGCACAAAATATGTTCTTTATGGGAACCAAGAATGCCAACTCTGACTATATATTATAAGATTATTTCAAAAATAACCAAATGATTAGTAACTGAATACTAATTAGGCAGTTAATGTGTAGACAGATCATAAAAGTAGATATTATAATTTAGAAGATAAATAGATAAGAAATGCCAACTAATAATTATTAGAGGGGAAGTATGGCATCAAAGGTAGTTGTGTGTATACATGAATAATGAGATGCTTCTAACTCTACAACTTCAATTTTCTTTTTCTTTGGTCTATAGTTGGTTAATTAGAACCTGCAAAAAACAGAAAGTGGATGCATTTTAGTTTTCTATGGATGATAATCTGAATTTGTGTTGCTCCGACTCTAAAAAAAAATATCACTCGATGCATGTCAGATCTTCCGAAAGTAGTGTTTGATGATATTATGGAGAGTTCGCGCAACATTCTGAATCGAAATTACCAGACATGTATGGCAGGAATACAGAAATGCTACTAAAAAAATGTAGAAACTGGTTCTTGTTAGTAAACAGACATGTGATTTAGCTGATTTTTCTTTGTGAACATCCCTTCAGTATAGAATAATTCCTTTTATTATTAACTAAACTTAGAATTATGGACATGAAAAATGAGATATCCTTTCTTTTGGGGCTGCTATAAACACAGGTATCGATCAATATGTGTTTAAATGATATACAATCAATCATCTGTATAACTGTGTTAGTTGTTCCAATATTTGGATCCTATAGCGAAATGTTGTTATAGAGAATATGTGATGTAACATAACATGAAAAATCGGTTACATAGGAAACACGTCTGTTATAGTGAAATGTTGTTATAGAGGATGACTGTTATAGAGAGGTTTGACTGTAAAGATTGAAAGTTAACGAGGAAAATGTTTTTATGTACCTTTATTAGCATCAGCTTCACTCAGAGGAGTTTCGGAGGATGGTGATGGTGGTGAAGTGCACACAGATTCCCGGGCTTCAATCAGCATGGCGATGACTTCTCGCATAGTAGGCCTATTGGCAGGGGATGTATTGGTGCAGAACATAGCAATCTTGAGAACTAGAGACATCTCCTCTCTTGTTCTTGCAACACTAACATCCAGTCTTTTGTCAAAAAGCTCAGTTAGTGCCACTCCTTCATGAATTGATCTCCTTACACAAGTCACCAAATCGCCTCCCTGATCGAGGGGTTGAACTGGAGACCTACCAGTAATCAATTCCAGCAAAACAACGCCATAACTATAGATGTCGCATTTCTCTGTCACTTTCATTGTGTATGCATATTCTGAAAAAAAGAAAAAAAAAAAAGAACTTAGTTAGCTTCTGCATTTAAGTTATGCTAATATAGAGTACCGTTTTAAGTGCCTCAAGACCGGTCTTACCAGGGGCAATGTAGCCGTATGAACCAGCAACTGCGGACATGGATTTTGAGTAAGGGAAGTCAATTAGCTTTGCCAAGCCAAAGTCTCCAACATGTGCCTCAAGCAATTCGTCCAACAAAATGTTGTTCGATTTTATATCCCTGTGAATGATATGTGGCTTACAGTCATGGTGCAAATAGCATAGTCCCTCAGCAGCTCCTAAGGCAATTTTGTACCTGCTATTCCAGTTTAGTAAACTAGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-ACCATG-ATTCTG-CTAAT-A-A-AGGCGCTTCGCCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATTGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAGTGTAATTG............................................................AGTTCTGCTTTTACATGTAATAAAAACTCTTGGATCTGTTTTCTTGAGTCTTGTCTATTGTCTCATTCTGGGATTTTCCAAACCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351658" ref_strand="+" ref_description="SGN-E351658 [cTOS-8-I21]">
      <seq>ctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactcttggatctgtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="28685" stop="8347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28385" g_stop="28211" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28210" i_stop="26584" i_length="1627">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26583" g_stop="26550" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="209" r_length="34" r_score="0.647"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E351658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28385" e_stop="28211"/>
          <exon e_start="26583" e_stop="26550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATTTTACCCTTTCCTAAATTTTATTTGTACGAAATGTTTTCTATATCGAACCACATTTTCCCCTTTAATACTCCTGTTCACATTTCTAAGGTTTCAAAATATAAGTTGAGCCATGCACAAATATATTCCATCTAAGGATTAAAATTAACCTAGCAAATCAGAGAGTATTTTGATTAAAATTAGTGCAAAATATTATTGATAATGTTTAATAACAAATAAGTAATATAAAGCTAATAAAAATAATTGCAAGTAAAATAACTTTCTTAAAAATGAATTTCTTCTTAATCACATCCAACAAACTGCAAGAAAATAAGTCGATTTATGCAAAATCGTCACTTATAATTTTTTCATGTTTTAAAAGTTGTACAACTATAGTCCTTGGGACCAACGAAGTACAAAATGTCTGTCTAACTTTTATAAAATTTTATATCGCGATCTAAATTATCATCATAAATTATTTAAATTTATTTTTAAAAAAATCATTTATCATAAAATAATAATTTACTAAATAATTGTCGCTATCGGCCCATTTACGAATCGTAAGGGCCCAATGATTAAATCTTGATATTTAGTGGTTGGCCCAATGATCTGGAGCCCATAGGGGGAGGGACATACAACGTCACATGCCTTTCATGTATATTCCTATAGCCAACATTATGTCATGTTGAGGTTATAATGCAAAGCCATACAAGTAGGCACATGTATTTGCAACAAATAAAATGTTATTTTGGGTTGGGGTGGGGAAGATAGAGATATAATGAAACTTGGAGTGATTATATACACATACATAGACATTTTAAAATAATGACGGTCGAGATAGAAATTTCACTGTGATATGATGTTCTTATAAAAGAGGATTCACACCATGTGTGGCTCTATCAATAATGAGCTTGCTTGGTATGAGGAATAAGAGATAACTGATCTCAAGATTGATTCCGAAATGAGTTTATTCGATATTTAACTGAGATAAAACCACTAAATAATTATCTCAAGATTGTAATGTTATTTTTTATGAAATCCATATTAAAATTGGAATATTCAATATAACGTATTCCCTAGTCAAATGAATTGTAAGAGTTTGGATACATACTAAATTGGAACCTACTAAATATACCCTAAGATTTAACCTTTGATAAGTTCTTTTCTTACCTTATTCACTTGTAAACTCTCGAATTGAAATCATACTAAATGTAGCAAATATCAGAAATATTGGAGGTTTGAATAATTTAGATTATGTATTTTTTTGTTTTATATTATTTAGCTCGTATTGACTTAACTCATTTCTTTAAAATGCTATTTATTGGGAGTGTATTACTAAATTAACTTTATTAATAATACTTTGAAATTCTAAAATTTACTATTACTATAATTATTTAATACTAAGAATAGAACCAAATATTTCTTTATATAATAAAAATCTCTTTATTTATCGAATCAGACTAGCAAAAGAAAACATCTTTTAATAGAACTAGGGGTCAAGTAATATAAACAATAATAGTATATTAATAAATCTAATAAATATTTTTTTTAAAAATTAATTCTTCAATATAAGTAACTCCTTTTTTAATATATCTAAACCCATAAGTTTCAAAAATATTTCAATGCATACATATACTTTTAGTTAAGATTAAAAATATTTAAAA</genome_strand>
        <mrna_strand>CTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTTATTGAAATGTGTGTTTGGTCATAGTGTAATTGAGTTCTGCTTTTACATGTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTCTTGGATCTGTTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284460" ref_strand="+" ref_description="SGN-E284460 [cLER-16-D22]">
      <seq>tcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctgtggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtgtctagggctttgcccngggggggtnaattctgtnaatttgtaaaagtgctagggcagaggtgtggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactcttggatctgtttttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29091" stop="8342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28791" g_stop="28730" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28217" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="502" r_length="440" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28216" i_stop="26695" i_length="1522">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26694" g_stop="26663" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="534" r_length="32" r_score="0.656"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E284460" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28791" e_stop="28730"/>
          <exon e_start="28656" e_stop="28217"/>
          <exon e_start="26694" e_stop="26663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATTTTACCCTTTCCTAAATTTTATTTGTACGAAATGTTTTCTATATCGAACCACATTTTCCCCTTTAATACTCCTGTTCACATTTCTAAGGTTTCAAAATATAAGTTGAGCCATGCACAAATATATTCCATCTAAGGATTAAAATTAACCTAGCAAATCAGAGAGTATTTTGATTAAAATTAGTGCAAAATATTATTGATAATGTTTAATAACAAATAAGTAATATAAAGCTAATAAAAATAATTGCAAGTAAAATAACTTTCTTAAAAATGAATTTCTTCTTAATCACATCCAACAAACTGCAAGAAAATAAGTCGATTTATGCAAAATCGTCACTTATAATTTTTTCATGTTTTAAAAGTTGTACAACTATAGTCCTTGGGACCAACGAAGTACAAAATGTCTGTCTAACTTTTATAAAATTTTATATCGCGATCTAAATTATCATCATAAATTATTTAAATTTATTTTTAAAAAAATCATTTATCATAAAATAATAATTTACTAAATAATTGTCGCTATCGGCCCATTTACGAATCGTAAGGGCCCAATGATTAAATCTTGATATTTAGTGGTTGGCCCAATGATCTGGAGCCCATAGGGGGAGGGACATACAACGTCACATGCCTTTCATGTATATTCCTATAGCCAACATTATGTCATGTTGAGGTTATAATGCAAAGCCATACAAGTAGGCACATGTATTTGCAACAAATAAAATGTTATTTTGGGTTGGGGTGGGGAAGATAGAGATATAATGAAACTTGGAGTGATTATATACACATACATAGACATTTTAAAATAATGACGGTCGAGATAGAAATTTCACTGTGATATGATGTTCTTATAAAAGAGGATTCACACCATGTGTGGCTCTATCAATAATGAGCTTGCTTGGTATGAGGAATAAGAGATAACTGATCTCAAGATTGATTCCGAAATGAGTTTATTCGATATTTAACTGAGATAAAACCACTAAATAATTATCTCAAGATTGTAATGTTATTTTTTATGAAATCCATATTAAAATTGGAATATTCAATATAACGTATTCCCTAGTCAAATGAATTGTAAGAGTTTGGATACATACTAAATTGGAACCTACTAAATATACCCTAAGATTTAACCTTTGATAAGTTCTTTTCTTACCTTATTCACTTGTAAACTCTCGAATTGAAATCATACTAAATGTAGCAAATATCAGAAATATTGGAGGTTTGAATAATTTAGATTATGTATTTTTTTGTTTTATATTATTTAGCTCGTATTGACTTAACTCATTTCTTTAAAATGCTATTTATTGGGAGTGTATTACTAAATTAACTTTATTAATAATACTTTGAAATTCTAAAATTTACTATTACTATAATTATTTAATACTAAGAATAGAACCAAATATTTCTTTATATAATAAAAATCTCTTTATTTATCGAATCAGACTAGCAAAAGAAAACATCTTTTAATAGAACTAGGGGTCAAGTAATATAAACAATAATAGTATATTAATAAATCTAATAAATATTTTTTTTA</genome_strand>
        <mrna_strand>TCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTGTGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGTCTAGGGCTTTGCCCNGGGGGGGTNAATTCTGTNAATTTGTAAAAGTGCTAGGGCAGAGGTGTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTTATTGAAATGTGTGTTTGGTCATAGTGTAATTGAGTTCTGCTTTTACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAATAAAAACTCTTGGATCTGTTTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539383" ref_strand="+" ref_description="SGN-E539383 [TUS-59-B20]">
      <seq>ctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactcttggatctgttttcttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29092" stop="8342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28792" g_stop="28730" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28215" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="505" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28214" i_stop="27973" i_length="242">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27972" g_stop="27948" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="529" r_length="24" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27947" i_stop="26755" i_length="1193">
            <donor d_prob="0.735" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26754" g_stop="26737" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="547" r_length="18" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E539383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28792" e_stop="28730"/>
          <exon e_start="28656" e_stop="28215"/>
          <exon e_start="27972" e_stop="27948"/>
          <exon e_start="26754" e_stop="26737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATTTTACCCTTTCCTAAATTTTATTTGTACGAAATGTTTTCTATATCGAACCACATTTTCCCCTTTAATACTCCTGTTCACATTTCTAAGGTTTCAAAATATAAGTTGAGCCATGCACAAATATATTCCATCTAAGGATTAAAATTAACCTAGCAAATCAGAGAGTATTTTGATTAAAATTAGTGCAAAATATTATTGATAATGTTTAATAACAAATAAGTAATATAAAGCTAATAAAAATAATTGCAAGTAAAATAACTTTCTTAAAAATGAATTTCTTCTTAATCACATCCAACAAACTGCAAGAAAATAAGTCGATTTATGCAAAATCGTCACTTATAATTTTTTCATGTTTTAAAAGTTGTACAACTATAGTCCTTGGGACCAACGAAGTACAAAATGTCTGTCTAACTTTTATAAAATTTTATATCGCGATCTAAATTATCATCATAAATTATTTAAATTTATTTTTAAAAAAATCATTTATCATAAAATAATAATTTACTAAATAATTGTCGCTATCGGCCCATTTACGAATCGTAAGGGCCCAATGATTAAATCTTGATATTTAGTGGTTGGCCCAATGATCTGGAGCCCATAGGGGGAGGGACATACAACGTCACATGCCTTTCATGTATATTCCTATAGCCAACATTATGTCATGTTGAGGTTATAATGCAAAGCCATACAAGTAGGCACATGTATTTGCAACAAATAAAATGTTATTTTGGGTTGGGGTGGGGAAGATAGAGATATAATGAAACTTGGAGTGATTATATACACATACATAGACATTTTAAAATAATGACGGTCGAGATAGAAATTTCACTGTGATATGATGTTCTTATAAAAGAGGATTCACACCATGTGTGGCTCTATCAATAATGAGCTTGCTTGGTATGAGGAATAAGAGATAACTGATCTCAAGATTGATTCCGAAATGAGTTTATTCGATATTTAACTGAGATAAAACCACTAAATAATTATCTCAAGATTGTAATGTTATTTTTTATGAAATCCATATTAAAATTGGAATATTCAATATAACGTATTCCCTAGTCAAATGAATTGTAAGAGTTTGGATACATACTAAATTGGAACCTACTAAATATACCCTAAGATTTAACCTTTGATAAGTTCTTTTCTTACCTTATTCACTTGTAAACTCTCGAATTGAAATCATACTAAATGTAGCAAATATCAGAAATATTGGAGGTTTGAATAATTTAGATTATGTATTTTTTTGTTTTATATTATTTAGCTCGTATTGACTTAACTCATTTCTTTAAAATGCTATTTATTGGGAGTGTATTACTAAATTAACTTTATTAATAATACTTTGAAATTCTAAAATTTACTATTACTATAATTATTTAATACTAAGAATAGAACCAAATATTTCTTTATATAATAAAAATCTCTTTATTTATCGAATCAGACTAGCAAAAGAAAACAT</genome_strand>
        <mrna_strand>CTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTTATTGAAATGTGTGTTTGGTCATAGTGTAATTGAGTTCTGCTTTTACATG..................................................................................................................................................................................................................................................TAATA-AAAACTCTTGGATCTGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548211" ref_strand="+" ref_description="SGN-E548211 [TUS-59-B20](-)">
      <seq>ctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactcttggatctgttttcttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29092" stop="8342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28792" g_stop="28730" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28215" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="505" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28214" i_stop="27973" i_length="242">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27972" g_stop="27948" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="529" r_length="24" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27947" i_stop="26755" i_length="1193">
            <donor d_prob="0.735" d_score="0.00"/>
            <acceptor a_prob="0.426" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26754" g_stop="26737" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="547" r_length="18" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E548211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28792" e_stop="28730"/>
          <exon e_start="28656" e_stop="28215"/>
          <exon e_start="27972" e_stop="27948"/>
          <exon e_start="26754" e_stop="26737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATTTTACCCTTTCCTAAATTTTATTTGTACGAAATGTTTTCTATATCGAACCACATTTTCCCCTTTAATACTCCTGTTCACATTTCTAAGGTTTCAAAATATAAGTTGAGCCATGCACAAATATATTCCATCTAAGGATTAAAATTAACCTAGCAAATCAGAGAGTATTTTGATTAAAATTAGTGCAAAATATTATTGATAATGTTTAATAACAAATAAGTAATATAAAGCTAATAAAAATAATTGCAAGTAAAATAACTTTCTTAAAAATGAATTTCTTCTTAATCACATCCAACAAACTGCAAGAAAATAAGTCGATTTATGCAAAATCGTCACTTATAATTTTTTCATGTTTTAAAAGTTGTACAACTATAGTCCTTGGGACCAACGAAGTACAAAATGTCTGTCTAACTTTTATAAAATTTTATATCGCGATCTAAATTATCATCATAAATTATTTAAATTTATTTTTAAAAAAATCATTTATCATAAAATAATAATTTACTAAATAATTGTCGCTATCGGCCCATTTACGAATCGTAAGGGCCCAATGATTAAATCTTGATATTTAGTGGTTGGCCCAATGATCTGGAGCCCATAGGGGGAGGGACATACAACGTCACATGCCTTTCATGTATATTCCTATAGCCAACATTATGTCATGTTGAGGTTATAATGCAAAGCCATACAAGTAGGCACATGTATTTGCAACAAATAAAATGTTATTTTGGGTTGGGGTGGGGAAGATAGAGATATAATGAAACTTGGAGTGATTATATACACATACATAGACATTTTAAAATAATGACGGTCGAGATAGAAATTTCACTGTGATATGATGTTCTTATAAAAGAGGATTCACACCATGTGTGGCTCTATCAATAATGAGCTTGCTTGGTATGAGGAATAAGAGATAACTGATCTCAAGATTGATTCCGAAATGAGTTTATTCGATATTTAACTGAGATAAAACCACTAAATAATTATCTCAAGATTGTAATGTTATTTTTTATGAAATCCATATTAAAATTGGAATATTCAATATAACGTATTCCCTAGTCAAATGAATTGTAAGAGTTTGGATACATACTAAATTGGAACCTACTAAATATACCCTAAGATTTAACCTTTGATAAGTTCTTTTCTTACCTTATTCACTTGTAAACTCTCGAATTGAAATCATACTAAATGTAGCAAATATCAGAAATATTGGAGGTTTGAATAATTTAGATTATGTATTTTTTTGTTTTATATTATTTAGCTCGTATTGACTTAACTCATTTCTTTAAAATGCTATTTATTGGGAGTGTATTACTAAATTAACTTTATTAATAATACTTTGAAATTCTAAAATTTACTATTACTATAATTATTTAATACTAAGAATAGAACCAAATATTTCTTTATATAATAAAAATCTCTTTATTTATCGAATCAGACTAGCAAAAGAAAACAT</genome_strand>
        <mrna_strand>CTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTTATTGAAATGTGTGTTTGGTCATAGTGTAATTGAGTTCTGCTTTTACATG..................................................................................................................................................................................................................................................TAATA-AAAACTCTTGGATCTGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348485" ref_strand="+" ref_description="SGN-E348485 [cTOF-30-I12]">
      <seq>aatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtgtggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactctttggatctgttttcttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29167" stop="8344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28867" g_stop="28730" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28210" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="585" r_length="447" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28209" i_stop="27373" i_length="837">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27372" g_stop="27336" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="620" r_length="35" r_score="0.649"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E348485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28867" e_stop="28730"/>
          <exon e_start="28656" e_stop="28210"/>
          <exon e_start="27372" e_stop="27336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATTTTACCCTTTCCTAAATTTTATTTGTACGAAATGTTTTCTATATCGAACCACATTTTCCCCTTTAATACTCCTGTTCACATTTCTAAGGTTTCAAAATATAAGTTGAGCCATGCACAAATATATTCCATCTAAGGATTAAAATTAACCTAGCAAATCAGAGAGTATTTTGATTAAAATTAGTGCAAAATATTATTGATAATGTTTAATAACAAATAAGTAATATAAAGCTAATAAAAATAATTGCAAGTAAAATAACTTTCTTAAAAATGAATTTCTTCTTAATCACATCCAACAAACTGCAAGAAAATAAGTCGATTTATGCAAAATCGTCACTTATAATTTTTTCATGTTTTAAAAGTTGTACAACTATAGTCCTTGGGACCAACGAAGTACAAAATGTCTGTCTAACTTTTATAAAATTTTATATCGCGATCTAAATTATCATCATAAATTATTTAAATTTATTTTTAAAAAAATCATTTATCATAAAATAATAATTTACTAAATAATTGTCGCTATCGGCCCATTTACGAATCGTAAGGGCCCAATGATTAAATCTTGATATTTAGTGGTTGGCCCAATGATCTGGAGCCCATAGGGGGAGGGACATACAACGTCACATGCCTTTCATGTATATTCCTATAGCCAACATTATGTCATGTTGAGGTTATAATGCAAAGCCATACAAGTAGGCACATGTATTTGCAACAAATAAAATGTTATTTTGGGTTGGGGTGGGGAAGATAGAGATATAATGAAACTTGGAGTGATTATATACACATACATAGACATTTTAAAATAATGACGGTCGAGATAGAAATTTCACTGTGATATGATGTTCTTATAAAAGAGGA</genome_strand>
        <mrna_strand>AATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTTATTGAAATGTGTGTTTGGTCATAGTGTAATTGAGTTCTGCTTTTACATGTAATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTCTTTG-GATCTG-TTTTCTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720736" ref_strand="+" ref_description="SGN-E720736 [FC11CG11]">
      <seq>gggcgattggcggccaatcggccgaattgattagcatatcagtcttaccaattttctttctttttcttcattcatacaacaaaaatggctaacgatgaagtgattctgttggatttttggcctagcatgtttggaatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtgtggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactcttggatctgttttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29403" stop="8343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29104" g_stop="28730" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="402" r_length="374" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28206" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="853" r_length="451" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28205" i_stop="27621" i_length="585">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.752" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27620" g_stop="27601" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="873" r_length="20" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E720736" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29104" e_stop="28730"/>
          <exon e_start="28656" e_stop="28206"/>
          <exon e_start="27620" e_stop="27601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAGCATATCAGTATTACCAATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATTTTACCCTTTCCTAAATTTTATTTGTACGAAATGTTTTCTATATCGAACCACATTTTCCCCTTTAATACTCCTGTTCACATTTCTAAGGTTTCAAAATATAAGTTGAGCCATGCACAAATATATTCCATCTAAGGATTAAAATTAACCTAGCAAATCAGAGAGTATTTTGATTAAAATTAGTGCAAAATATTATTGATAATGTTTAATAACAAATAAGTAATATAAAGCTAATAAAAATAATTGCAAGTAAAATAACTTTCTTAAAAATGAATTTCTTCTTAATCACATCCAACAAACTGCAAGAAAATAAGTCGATTTATGCAAAATCGTCACTTATAATTTTTTCATGTTTTAAAAGTTGTACAACTATAGTCCTTGGGACCAACGAAGTACAAAATGTCTGTCTAACTTTTATAAAATTTTATATCGCGATCTAAATTATCATCATAAATTATTTAAATTTATTTTTAAAAAAATCATTTATCATAAAATAATAATTTACTAAATAATTGTCGCTATCGGCCCATTTACGAATCGTAAGGGCCCAATGATTAAATCTTGATATTTAGTGGTTGGCCCAATGATCTGG</genome_strand>
        <mrna_strand>GATTAGCATATCAGTCTTACCAATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTTATTGAAATGTGTGTTTGGTCATAGTGTAATTGAGTTCTGCTTTTACATGTAATAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGATCTGTTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695725" ref_strand="+" ref_description="SGN-E695725 [LH_Ea07E11](-)">
      <seq>tacaacaaaaatggctaacgatgaagtgattctgttggatttttggcctagcatgtttggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcatcatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtttggaaggataaagcccctttcctcccttttgatccttatgagagagcacaagctaggttttgggctgactacattgataagaagttgtttgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttatgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaaattaaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttcttttgttgttgtttcatgattctgcttttaaatggaatggaactcttgggtctgctataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29358" stop="28007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29058" g_stop="28730" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28190" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="795" r_length="467" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E695725" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29058" e_stop="28730"/>
          <exon e_start="28656" e_stop="28190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATT</genome_strand>
        <mrna_strand>TACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATCATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTCCTCCCTTTTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGACTACATTGATAAGAAG.........................................................................TTGTTTGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTATGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAAATTAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTGTTGTTGTTTCATGATTCTGCTTTTAAATGGAATGGAACTCTTGGGTCTGCTATAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287247" ref_strand="+" ref_description="SGN-E287247 [cLES-15-E23]">
      <seq>aagcccctttcctgccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29103" stop="8359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28803" g_stop="28730" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28203" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="528" r_length="454" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E287247" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28803" e_stop="28730"/>
          <exon e_start="28656" e_stop="28203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAA</genome_strand>
        <mrna_strand>AAGCCCCTTTCCTGCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTTATTGAAATGTGTGTTTGGTCATAGTGTAATTGAGTTCTGCTTTTACATGTAATAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297856" ref_strand="+" ref_description="SGN-E297856 [cLET-38-L4]">
      <seq>tggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29113" stop="8361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28813" g_stop="28730" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28205" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="536" r_length="452" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E297856" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28813" e_stop="28730"/>
          <exon e_start="28656" e_stop="28205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT</genome_strand>
        <mrna_strand>TGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTTATTGAAATGTGTGTTTGGTCATAGTGTAATTGAGTTCTGCTTTTACATGTAATAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346429" ref_strand="+" ref_description="SGN-E346429 [cTOF-23-B1]">
      <seq>ttctgttggatttttggcctagcatgtttggaatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtgtggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttcttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacatgtaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29329" stop="8365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29029" g_stop="28730" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28209" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="747" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E346429" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29029" e_stop="28730"/>
          <exon e_start="28656" e_stop="28209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTATTGAAATGTGTGTTTGGTCATAGTGTAATTGAGTTCTGCTTTTACATGTAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691885" ref_strand="+" ref_description="SGN-E691885 [LH_Ea07E11]">
      <seq>cgtacaacaaaaatggctaacgatgaagtgattctgttggatttttggcctagcatgtttggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcatcatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtttggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgactacattgataagaagttgtttgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttatgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaaattaaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttcttttgttgttgtttcatgattctgcttttacttgtaatggaactcttgggtctgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29360" stop="28007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29060" g_stop="28730" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28210" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="777" r_length="447" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E691885" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29060" e_stop="28730"/>
          <exon e_start="28656" e_stop="28210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CGTACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATCATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGACTACATTGATAAGAAG.........................................................................TTGTTTGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTATGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAAATTAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTGTTGTTGTTTCATGATTCTGCTTTTACTTGTAATGGAACTCTTGGGTCTGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354224" ref_strand="+" ref_description="SGN-E354224 [cTOS-16-G12]">
      <seq>tattattggagttgagtatattgatgaagtgtggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcagaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtgtgtttggtcatagtgtaattgagttctgcttttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29144" stop="8375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28844" g_stop="28730" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28216" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="556" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E354224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28844" e_stop="28730"/>
          <exon e_start="28656" e_stop="28216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTTATTGAAATGTGTGTTTGGTCATAGTGTAATTGAGTTCTGCTTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747233" ref_strand="+" ref_description="SGN-E747233 [GI|6653232]">
      <seq>caaaaatggctaacgatgaagtgattctgttggatttttggcctagcatgtttggaatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtgtggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggaggagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggaggtaattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaaagtgctaaggcaaaagtttggaattgaataaacatatggaccatgattctgctaataaaggcgcttcgcccttctttttattgaaatgtggtgtttggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29353" stop="28007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29053" g_stop="28730" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28241" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="739" r_length="416" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E747233" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29053" e_stop="28730"/>
          <exon e_start="28656" e_stop="28241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGGAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGGTAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAAAAGTTTGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCGCTTCGCCCTTCTTTTTATTGAAATGTGGTGTTTGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691624" ref_strand="+" ref_description="SGN-E691624 [LH_Ea06J14]">
      <seq>ccgttatgtgccgaattctgcacgaggattcatacaagaaaccttgctaacgatgaagtgattctgttggatttttggcctagcatgtttggtatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcatcatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtttggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgactacattgataagaagttgtttgattctgggaggaatctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttatgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcactgtagaggctgattgcccaaagtttgtggcttgggccaagaattgtatgctgaaggacagtggtggctaagtctttgcctgatcaaattaaggtctgtgaatttgtaaaagtgctaaggccaaagtttgggaattgaataaacatatggaccatgattctgctaataaaggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29363" stop="28007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29063" g_stop="28730" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="360" r_length="333" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28280" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="739" r_length="379" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E691624" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29063" e_stop="28730"/>
          <exon e_start="28656" e_stop="28280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGT-GTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTT-GGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ATTCATACAAGAAACCTTGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATCATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGACTACATTGATAAGAAG.........................................................................TTGTTTGATTCTGGGAGGAATCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTATGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCACTGTAGAGGCTGATTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAAGGACAGTGGTGGCTAAGTCTTTGCCTGATCAAATTAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCCAAAGTTTGGGAATTGAATAAACATATGGACCATGATTCTGCTAATAAAGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328677" ref_strand="+" ref_description="SGN-E328677 [cTOC-23-K9]">
      <seq>gaaaaaaaaacagatccaagagtttttattacatgtaaaagcagaactcaattacagtattaccaattttctttctttttcttcattcatacaacaaaaatggctaacgatgaagtgattctgttggatttttggcctagcatgtttggaatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtgtggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctgagggacagtgtggctaagtctttgcctgatcaacataaggtctgtgaatttgtaaagtgctaaggcagaagtttggaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29396" stop="28016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29090" g_stop="28730" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="417" r_length="360" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28316" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="757" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E328677" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29090" e_stop="28730"/>
          <exon e_start="28656" e_stop="28316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACCAATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGA</genome_strand>
        <mrna_strand>TATTACCAATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGT-AAAGTGCTAAGGCAGAAGTTTGGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691584" ref_strand="+" ref_description="SGN-E691584 [LH_Ea06H22]">
      <seq>cattttaaggccgagttctgcaggaagattcatacaagacccctttctaacgatgaagtgattctgttggatttttggcctatcatgattgggatgaggctaaggattgcacttgctgagaaatagattaaatatgagtgcagacactaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcgtcatggcaaaccaatttgcgagcctattattggagtcgagtatattgatgaagtttggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgactacattgataagaagttgtttgattctgggatgaatctatggacaacaaagggagaagagcaagagacagctaataaacatttcatagaatgccttaaggtgttacagggagcacttggagagaacccttactttggaggagataattttggttatgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccatagtttgtggcttgggccaagaattgtatgctgagggacagggtggctaagtctttgcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29344" stop="28069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29032" g_stop="28730" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="360" r_length="302" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28369" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="648" r_length="288" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E691584" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29032" e_stop="28730"/>
          <exon e_start="28656" e_stop="28369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGAT</genome_strand>
        <mrna_strand>TGATTCTGTTGGATTTTTGGCCTATCATGATTGGGATGAGGCTAAGGATTGCACTTGCTGAGAAATAGATTAAATATGAGTGCAGACA-CTAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCGTCATGGCAAACCAATTTGCGAGCCTATTATTGGAGTCGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGACTACATTGATAAGAAG.........................................................................TTGTTTGATTCTGGGATGAATCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAATAAACATTTCATAGAATGCCTTAAGGTGTTACAGGGAGCACTTGGAGAGAACCCTTACTTTGGAGGAGATAATTTTGGTTATGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCATAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGGGTGGCTAAGTCTTTGCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284402" ref_strand="+" ref_description="SGN-E284402 [cLER-16-K12]">
      <seq>ttaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtgtggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagtttgtggcttgggccaagaattgtatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29263" stop="28098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28963" g_stop="28730" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28398" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="492" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E284402" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28963" e_stop="28730"/>
          <exon e_start="28656" e_stop="28398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGA</genome_strand>
        <mrna_strand>TTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311276" ref_strand="+" ref_description="SGN-E311276 [cLEZ-16-F12]">
      <seq>acaaaaatggctaacgatgaagtgattctgttggatttttggcctagcatgtttggaatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtgtggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgtagaggctgagtgcccaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29354" stop="28128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29054" g_stop="28730" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28428" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="553" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E311276" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29054" e_stop="28730"/>
          <exon e_start="28656" e_stop="28428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGT</genome_strand>
        <mrna_strand>ACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323483" ref_strand="+" ref_description="SGN-E323483 [cTOC-7-K1]">
      <seq>aaaaatggctaacgatgaagtgattctgttggatttttggcctancatgtttggaatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtgtggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagataattttggttgtgtggatattgcgttgattgggtactatagctggttttatgcttatgagagttatgctaacatcagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29352" stop="28148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29052" g_stop="28730" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28448" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="531" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E323483" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29052" e_stop="28730"/>
          <exon e_start="28656" e_stop="28448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGT</genome_strand>
        <mrna_strand>AAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTANCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232997" ref_strand="+" ref_description="SGN-E232997 [cLED-6-J9]">
      <seq>aattttctttctttttcttcattcatacaacaaaaatggctaacgatgaagtgattctgttggatttttggcctagcatgtttggaatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtgtggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagagggagcacttggagagaagccttactttggaggagantaatttggttgtgtggatattgcgttgattgggtactatagctggttttatgcctatgagagttatgctaacatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29383" stop="28150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29083" g_stop="28730" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28656" g_stop="28450" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="560" r_length="207" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E232997" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29083" e_stop="28730"/>
          <exon e_start="28656" e_stop="28450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGT</genome_strand>
        <mrna_strand>AATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG.........................................................................TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGANTAATTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCCTATGAGAGTTATGCTAACATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243843" ref_strand="+" ref_description="SGN-E243843 [cLED-35-G9]">
      <seq>tttctttttcttcattcatacaacaaaaatggctaacgatgaagtgattctgttggatttttggcctagcatgtttggaatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaagtgtggaaggataaagcccctttcctcccttctgatccttatgagagagcacaagctaggttttgggctgattacattgataagaaggtaaattcatagtccctctgtttcagttaagacggtaagtaactattctcttttggtttgttgaaattttcagttgtatgattctgggaggaagctatggacaacaaagggagaagagcaagagacagctaaaaaagatttcatagaatgccttaaggtgttagaggggagcacttggagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29376" stop="28248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29076" g_stop="28548" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E243843" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29076" e_stop="28548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGA-GGGAGCACTTGGAGAGA</genome_strand>
        <mrna_strand>TTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGGAGCACTTGGAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236294" ref_strand="+" ref_description="SGN-E236294 [cLED-20-B11]">
      <seq>tttctttttcttcattcatacaacaaaaatggctaacgatgaagtgattctgttggatttttggcctagcatgtttggaatgaggctaaggattgcacttgctgagaaagagattaaatatgagtacagagacgaggatttgaggaacaaaagtcctctgcttttgcagatgaatcctattcacaagaaaatccctgttttgattcataatggcaaaccaatttgcgagtctattattggagttgagtatattgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="29376" stop="28517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29076" g_stop="28817" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E236294" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29076" e_stop="28817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAA</genome_strand>
        <mrna_strand>TTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGA-CGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398452" ref_strand="+" ref_description="SGN-E398452 [TUS-16-D11](-)">
      <seq>tcacaatggtaaaccgattngtgagtctattattggagttgagtatattgatgaagtttggaaggataaagcccctttgctcccttctgatccttatgagagggcacaagctaggttttgggctgactacattgacaagaagttttattgggcttcaaggaagctgtggacaacaaaaggagaagagctggacgcagctaaggaagagttcatagtatgcctcaaagttctggagggagcactaggagacaagccttattttggaggggataactttggttttgtggatattgctctcattgggttctactgttggtttagtgcctatgagacttacggtaacttcagcacagaggctgagagcccaaagtttgtcgcttgggccaagaggtgtatgcagagggacagtgtggctaagtcttcgcccgaccaacataaggtcctcgagtttgtgaaagttgttaggcagaggcttggaattgaataaaaatatgcttatgcaattatgcatcataatgtattgaaaaaaggcacttcattgtgccttcttgtgttgttgtttcaagactttaaaatgtttgtttggtcatagtgtaagttctacttgcacttgtaataaaggagtcttagcctgtgactttgtttagtgtggcttttgttgtccttgtatgtaattgtggagcttctcctctttgtaatgataagtaattaattcttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="32210" stop="30196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31910" g_stop="31769" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31768" i_stop="31073" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31072" g_stop="30496" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="719" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="729"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E398452" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31910" e_stop="31769"/>
          <exon e_start="31072" e_stop="30496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAGGTAAATTTTATTAGTTTTTTTAAGGCCGATTTGATACTAAGTTGGGATTGAAGCATTGTTGTATTATTTGATTTGTTTCACATTGGTTGGTTGAGAGTGAAATGTTGTTTTCTTAATTGTGTTTGTCAATGGTGACCTAATGAGATTAGCTTTTGGGCTTAGATTAGGTGATCATCATCTTGGGCGTGGTGGTGTTATTAGAGTTTCACATTAGTTGTAGAAATGAAATAGTCTCGTTGTCTTTTCGTTATGAAATTTGAAAAAGAAGTACTTTGTTTCCAAACTGAAAAATGAGATTTGAAAATTGGAGTTGTGTTTGATCAAACGCCTTGTTATCCTCATTTCATACGCTAGGATTCCCCCCCTACTCCAGATGATTAATTTTAGGCGTGTGGTGTGTCAGAGTTTCACCTTGGTCGATGAAATGGAAATTTATCTTATTATAGAGTTAATCCTTATTTCATAAGGTATGTTCCCTGCTCCAGATGTTCAGTCCTAAGTGCGGTGTTGTTAGAGTTTCACATTAATTGAAAAATTGGAATTATGTCTTGTTATGTAGTATTGCTTAATCCTCACTTATTTTTCGCTAGCGTCTAATGTCCATTTTCCATGAACTGACTATGACTTTTATTTTAGTTTTTGTGTCAACAAGTGATGATGACCTGTTTCTTTTTCTGCATTTGTTGAAATTTTCAGTTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCTCAAAGTTCTGGAGGGAGCACTAGGAGACAAGCCTTATTTTGGAGGGGATAACTTTGGTTTTGTGGATATTGCTCTCATTGGGTTCTACTGTTGGTTTAGTGCCTATGAGACTTACGGTAACTTCAGCACAGAGGCTGAGAGCCCAAAGTTTGTCGCTTGGGCCAAGAGGTGTATGCAGAGGGACAGTGTGGCTAAGTCTTCGCCCGACCAACATAAGGTCCTCGAGTTTGTGAAAGTTGTTAGGCAGAGGCTTGGAATTGAATAAAAATATGCTTATGCAATTATGCATCATAATGTATTGAAAAAAGGCACTTCATTGTGCCTTCTTGTGTTGTTGTTTCAAGACTTTAAAATGTTTGTTTGGTCATAGTGTAAGTTCTACTTGCACTTGTAATAAAGGAGTCTTAGCCTGTGACTTTGTTTAGTGTGGCTTTTGTTGTCCTTGTATGTAATTGTGGAGCTTCTCCTCTTTGTAATGATAAGTAATTAATTCTTCA</genome_strand>
        <mrna_strand>TCACAATGGTAAACCGATTNGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCTCAAAGTTCTGGAGGGAGCACTAGGAGACAAGCCTTATTTTGGAGGGGATAACTTTGGTTTTGTGGATATTGCTCTCATTGGGTTCTACTGTTGGTTTAGTGCCTATGAGACTTACGGTAACTTCAGCACAGAGGCTGAGAGCCCAAAGTTTGTCGCTTGGGCCAAGAGGTGTATGCAGAGGGACAGTGTGGCTAAGTCTTCGCCCGACCAACATAAGGTCCTCGAGTTTGTGAAAGTTGTTAGGCAGAGGCTTGGAATTGAATAAAAATATGCTTATGCAATTATGCATCATAATGTATTGAAAAAAGGCACTTCATTGTGCCTTCTTGTGTTGTTGTTTCAAGACTTTAAAATGTTTGTTTGGTCATAGTGTAAGTTCTACTTGCACTTGTAATAAAGGAGTCTTAGCCTGTGACTTTGTTTAGTGTGGCTTTTGTTGTCCTTGTATGTAATTGTGGAGCTTCTCCTCTTTGTAATGATAAGTAATTAATTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266375" ref_strand="+" ref_description="SGN-E266375 [cLEI-3-A18]">
      <seq>ttctttcttgtttattcatatatcaaaaatggctaacaatgaggtgattttggtggatttttggcctagcatgtttggcttgaggctgaggattgcacttgctgaaaaagaggttaaatatgagtacagagaagaggatttgccgaacaaaagccctctgcttttgcagatgaaccctattcacaagaaaatccctgttttgattcacaatggtaaaccgatttgtgagtctattattggagttgagtatattgatgaagtttggaaggataaagcccctttgctcccttctgatccttatgagagggcacaagctaggttttgggctgactacattgacaagaagttttattgggcttcaaggaagctgtggacaacaaaaggagaagagctggacgcagctaaggaagagttcatagtatgcctcaaagttctggagggagcactaggagacaagccttattttggaggggataactttggttttgtggatattgctctcattgggttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="32414" stop="30604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32114" g_stop="31769" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31768" i_stop="31073" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31072" g_stop="30904" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="515" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E266375" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32114" e_stop="31769"/>
          <exon e_start="31072" e_stop="30904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAGGTAAATTTTATTAGTTTTTTTAAGGCCGATTTGATACTAAGTTGGGATTGAAGCATTGTTGTATTATTTGATTTGTTTCACATTGGTTGGTTGAGAGTGAAATGTTGTTTTCTTAATTGTGTTTGTCAATGGTGACCTAATGAGATTAGCTTTTGGGCTTAGATTAGGTGATCATCATCTTGGGCGTGGTGGTGTTATTAGAGTTTCACATTAGTTGTAGAAATGAAATAGTCTCGTTGTCTTTTCGTTATGAAATTTGAAAAAGAAGTACTTTGTTTCCAAACTGAAAAATGAGATTTGAAAATTGGAGTTGTGTTTGATCAAACGCCTTGTTATCCTCATTTCATACGCTAGGATTCCCCCCCTACTCCAGATGATTAATTTTAGGCGTGTGGTGTGTCAGAGTTTCACCTTGGTCGATGAAATGGAAATTTATCTTATTATAGAGTTAATCCTTATTTCATAAGGTATGTTCCCTGCTCCAGATGTTCAGTCCTAAGTGCGGTGTTGTTAGAGTTTCACATTAATTGAAAAATTGGAATTATGTCTTGTTATGTAGTATTGCTTAATCCTCACTTATTTTTCGCTAGCGTCTAATGTCCATTTTCCATGAACTGACTATGACTTTTATTTTAGTTTTTGTGTCAACAAGTGATGATGACCTGTTTCTTTTTCTGCATTTGTTGAAATTTTCAGTTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCTCAAAGTTCTGGAGGGAGCACTAGGAGACAAGCCTTATTTTGGAGGGGATAACTTTGGTTTTGTGGATATTGCTCTCATTGGGTTCTACT</genome_strand>
        <mrna_strand>TTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGGTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCTCAAAGTTCTGGAGGGAGCACTAGGAGACAAGCCTTATTTTGGAGGGGATAACTTTGGTTTTGTGGATATTGCTCTCATTGGGTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205579" ref_strand="+" ref_description="SGN-E205579 [cLEC-21-E22]">
      <seq>ttttatttctttcttgtttattcatatatcaaaaatggctaacaatgaggtgattttgttggatttttggcctagcatgtttggcttgaggctgaggattgcacttgctgaaaaagaggttaaatatgagtacagagaagaggatttgccgaacaaaagccctctgcttttgcagatgaaccctattcacaagaaaatccctgttttgattcacaatggtaaaccgatttgtgagtctattattggagttgagtatattgatgaagtttggaaggataaagcccctttgctcccttctgatccttatgagagggcacaagctaggttttgggctgactacattgacaagaagttttattgggcttcaaggaagctgtggacaacaaaaggagaagagctggacgcagctaaggaagagttcatagtatgcctcaaagttctggagggagcactaggagacaagccttattttggaggggataactttggttttgtggatattgctctcattgggttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="32420" stop="30606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32120" g_stop="31769" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31768" i_stop="31073" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31072" g_stop="30906" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="519" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E205579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32120" e_stop="31769"/>
          <exon e_start="31072" e_stop="30906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAGGTAAATTTTATTAGTTTTTTTAAGGCCGATTTGATACTAAGTTGGGATTGAAGCATTGTTGTATTATTTGATTTGTTTCACATTGGTTGGTTGAGAGTGAAATGTTGTTTTCTTAATTGTGTTTGTCAATGGTGACCTAATGAGATTAGCTTTTGGGCTTAGATTAGGTGATCATCATCTTGGGCGTGGTGGTGTTATTAGAGTTTCACATTAGTTGTAGAAATGAAATAGTCTCGTTGTCTTTTCGTTATGAAATTTGAAAAAGAAGTACTTTGTTTCCAAACTGAAAAATGAGATTTGAAAATTGGAGTTGTGTTTGATCAAACGCCTTGTTATCCTCATTTCATACGCTAGGATTCCCCCCCTACTCCAGATGATTAATTTTAGGCGTGTGGTGTGTCAGAGTTTCACCTTGGTCGATGAAATGGAAATTTATCTTATTATAGAGTTAATCCTTATTTCATAAGGTATGTTCCCTGCTCCAGATGTTCAGTCCTAAGTGCGGTGTTGTTAGAGTTTCACATTAATTGAAAAATTGGAATTATGTCTTGTTATGTAGTATTGCTTAATCCTCACTTATTTTTCGCTAGCGTCTAATGTCCATTTTCCATGAACTGACTATGACTTTTATTTTAGTTTTTGTGTCAACAAGTGATGATGACCTGTTTCTTTTTCTGCATTTGTTGAAATTTTCAGTTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCTCAAAGTTCTGGAGGGAGCACTAGGAGACAAGCCTTATTTTGGAGGGGATAACTTTGGTTTTGTGGATATTGCTCTCATTGGGTTCTA</genome_strand>
        <mrna_strand>TTTTATTTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCTCAAAGTTCTGGAGGGAGCACTAGGAGACAAGCCTTATTTTGGAGGGGATAACTTTGGTTTTGTGGATATTGCTCTCATTGGGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207603" ref_strand="+" ref_description="SGN-E207603 [cLEC-32-C14]">
      <seq>ttggcttgaggctgaggattgcacttgctgaaaaagaggttaaatatgagtacagagaagaggatttgccgaacaaaagccctctgcttttgcagatgaaccctattcacaagaaaatccctgttttgattcacaatggtaaaccgatttgtgagtctattattggagttgagtatattgatgaagtttggaaggataaagcccctttgctcccttctgatccttatgagagggcacaagctaggttttgggctgactacattgacaagaagttttattgggcttcaaggaagctgtggacaacaaaaggagaagagctggacgcagctaaggaagagttcatagtatgcctcaaagttctggagggagcactaggagacaagccttattttggaggggataactttggttttgtggatattgctctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="32340" stop="30614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32040" g_stop="31769" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31768" i_stop="31073" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31072" g_stop="30914" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="431" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E207603" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32040" e_stop="31769"/>
          <exon e_start="31072" e_stop="30914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAGGTAAATTTTATTAGTTTTTTTAAGGCCGATTTGATACTAAGTTGGGATTGAAGCATTGTTGTATTATTTGATTTGTTTCACATTGGTTGGTTGAGAGTGAAATGTTGTTTTCTTAATTGTGTTTGTCAATGGTGACCTAATGAGATTAGCTTTTGGGCTTAGATTAGGTGATCATCATCTTGGGCGTGGTGGTGTTATTAGAGTTTCACATTAGTTGTAGAAATGAAATAGTCTCGTTGTCTTTTCGTTATGAAATTTGAAAAAGAAGTACTTTGTTTCCAAACTGAAAAATGAGATTTGAAAATTGGAGTTGTGTTTGATCAAACGCCTTGTTATCCTCATTTCATACGCTAGGATTCCCCCCCTACTCCAGATGATTAATTTTAGGCGTGTGGTGTGTCAGAGTTTCACCTTGGTCGATGAAATGGAAATTTATCTTATTATAGAGTTAATCCTTATTTCATAAGGTATGTTCCCTGCTCCAGATGTTCAGTCCTAAGTGCGGTGTTGTTAGAGTTTCACATTAATTGAAAAATTGGAATTATGTCTTGTTATGTAGTATTGCTTAATCCTCACTTATTTTTCGCTAGCGTCTAATGTCCATTTTCCATGAACTGACTATGACTTTTATTTTAGTTTTTGTGTCAACAAGTGATGATGACCTGTTTCTTTTTCTGCATTTGTTGAAATTTTCAGTTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCTCAAAGTTCTGGAGGGAGCACTAGGAGACAAGCCTTATTTTGGAGGGGATAACTTTGGTTTTGTGGATATTGCTCTCATT</genome_strand>
        <mrna_strand>TTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCTCAAAGTTCTGGAGGGAGCACTAGGAGACAAGCCTTATTTTGGAGGGGATAACTTTGGTTTTGTGGATATTGCTCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210158" ref_strand="+" ref_description="SGN-E210158 [cLEC-40-J14]">
      <seq>ttatttctttcttgtttattcatatatcaaaaatggctaacaatgaggtgattttgttggatttttggcctagcatgtttggcttgaggctgaggattgcacttgctgaaaaagaggttaaatatgagtacagagaagaggatttgccgaacaaaagccctctgcttttgcagatgaaccctattcacaagaaaatccctgttttgattcacaatggtaaaccgatttgtgagtctattattggagttgagtatattgatgaagtttggaaggataaagcccctttgctcccttctgatccttatgagagggcacaagctaggttttgggctgactacattgacaagaagttttattgggcttcaaggaagctgtggacaacaaaaggagaagagctggacgcagctaaggaagagttcatagtatgcctcaaagttctggagggagcactaggagacaagccttattttggaggggataactttggttttgtggatattgctctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="32418" stop="30616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32118" g_stop="31769" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31768" i_stop="31073" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31072" g_stop="30916" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="507" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E210158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32118" e_stop="31769"/>
          <exon e_start="31072" e_stop="30916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAGGTAAATTTTATTAGTTTTTTTAAGGCCGATTTGATACTAAGTTGGGATTGAAGCATTGTTGTATTATTTGATTTGTTTCACATTGGTTGGTTGAGAGTGAAATGTTGTTTTCTTAATTGTGTTTGTCAATGGTGACCTAATGAGATTAGCTTTTGGGCTTAGATTAGGTGATCATCATCTTGGGCGTGGTGGTGTTATTAGAGTTTCACATTAGTTGTAGAAATGAAATAGTCTCGTTGTCTTTTCGTTATGAAATTTGAAAAAGAAGTACTTTGTTTCCAAACTGAAAAATGAGATTTGAAAATTGGAGTTGTGTTTGATCAAACGCCTTGTTATCCTCATTTCATACGCTAGGATTCCCCCCCTACTCCAGATGATTAATTTTAGGCGTGTGGTGTGTCAGAGTTTCACCTTGGTCGATGAAATGGAAATTTATCTTATTATAGAGTTAATCCTTATTTCATAAGGTATGTTCCCTGCTCCAGATGTTCAGTCCTAAGTGCGGTGTTGTTAGAGTTTCACATTAATTGAAAAATTGGAATTATGTCTTGTTATGTAGTATTGCTTAATCCTCACTTATTTTTCGCTAGCGTCTAATGTCCATTTTCCATGAACTGACTATGACTTTTATTTTAGTTTTTGTGTCAACAAGTGATGATGACCTGTTTCTTTTTCTGCATTTGTTGAAATTTTCAGTTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCTCAAAGTTCTGGAGGGAGCACTAGGAGACAAGCCTTATTTTGGAGGGGATAACTTTGGTTTTGTGGATATTGCTCTCA</genome_strand>
        <mrna_strand>TTATTTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCTCAAAGTTCTGGAGGGAGCACTAGGAGACAAGCCTTATTTTGGAGGGGATAACTTTGGTTTTGTGGATATTGCTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395346" ref_strand="+" ref_description="SGN-E395346 [TUS-16-D11]">
      <seq>agaactagtctcgagtttttatttctttcttgtttattcatatatcaaaaatggctaacaatgaggtgattttgttggatttttggcctagcatgtttggcttgaggctgaggattgcacttgctgaaaaagaggttaaatatgagtacagagaagaggatttgccgaacaaaagccctctgcttttgcagatgaaccctattcacaagaaaatccctgttttgattcacaatggtaaaccgatttgtgagtctattattggagttgagtatattgatgaagtttggaaggataaagcccctttgctcccttctgatccttatgagagggcacaagctaggttttgggctgactacattgacaagaagttttattgggcttcaaggaaactgtggacaacaaaaggagaagagctggacgcatctaaggaatacttcataatatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="32420" stop="30693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32137" g_stop="31769" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31768" i_stop="31073" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31072" g_stop="30993" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="448" r_length="80" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E395346" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32137" e_stop="31769"/>
          <exon e_start="31072" e_stop="30993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAGTACTAGCAATTTTATTTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAGGTAAATTTTATTAGTTTTTTTAAGGCCGATTTGATACTAAGTTGGGATTGAAGCATTGTTGTATTATTTGATTTGTTTCACATTGGTTGGTTGAGAGTGAAATGTTGTTTTCTTAATTGTGTTTGTCAATGGTGACCTAATGAGATTAGCTTTTGGGCTTAGATTAGGTGATCATCATCTTGGGCGTGGTGGTGTTATTAGAGTTTCACATTAGTTGTAGAAATGAAATAGTCTCGTTGTCTTTTCGTTATGAAATTTGAAAAAGAAGTACTTTGTTTCCAAACTGAAAAATGAGATTTGAAAATTGGAGTTGTGTTTGATCAAACGCCTTGTTATCCTCATTTCATACGCTAGGATTCCCCCCCTACTCCAGATGATTAATTTTAGGCGTGTGGTGTGTCAGAGTTTCACCTTGGTCGATGAAATGGAAATTTATCTTATTATAGAGTTAATCCTTATTTCATAAGGTATGTTCCCTGCTCCAGATGTTCAGTCCTAAGTGCGGTGTTGTTAGAGTTTCACATTAATTGAAAAATTGGAATTATGTCTTGTTATGTAGTATTGCTTAATCCTCACTTATTTTTCGCTAGCGTCTAATGTCCATTTTCCATGAACTGACTATGACTTTTATTTTAGTTTTTGTGTCAACAAGTGATGATGACCTGTTTCTTTTTCTGCATTTGTTGAAATTTTCAGTTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCT</genome_strand>
        <mrna_strand>AGAACTAGT-CTCGAGTTTTTATTTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTGGGCTTCAAGGAAACTGTGGACAACAAAAGGAGAAGAGCTGGACGCATCTAAGGAATACTTCATAATATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205067" ref_strand="+" ref_description="SGN-E205067 [cLEC-16-L10]">
      <seq>gaactagtctcgagtttttatttctttcttgtttattcatatatcaaaaatggctaacaatgaggtgattttgttggatttttggcctagcatgtttggcttgaggctgaggattgcacttgctgaaaaagaggttaaatatgagtacagagaagaggatttgccgaacaaaagccctctgcttttgcagatgaaccctattcacaagaaaatccctgttttgattcacaatggtaaaccgatttgtgagtctattattggagttgagtatattgatgaagtttggaaggataaagcccctttgctcccttctgatccttatgagagggcacaagctaggttttgggctgactacattgacaagaagttttattgggcttcaaggaagctgtggacaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="32420" stop="30737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32136" g_stop="31769" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31768" i_stop="31073" i_length="696">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31072" g_stop="31037" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="403" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E205067" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32136" e_stop="31769"/>
          <exon e_start="31072" e_stop="31037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAGTACTAGCAATTTTATTTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAGGTAAATTTTATTAGTTTTTTTAAGGCCGATTTGATACTAAGTTGGGATTGAAGCATTGTTGTATTATTTGATTTGTTTCACATTGGTTGGTTGAGAGTGAAATGTTGTTTTCTTAATTGTGTTTGTCAATGGTGACCTAATGAGATTAGCTTTTGGGCTTAGATTAGGTGATCATCATCTTGGGCGTGGTGGTGTTATTAGAGTTTCACATTAGTTGTAGAAATGAAATAGTCTCGTTGTCTTTTCGTTATGAAATTTGAAAAAGAAGTACTTTGTTTCCAAACTGAAAAATGAGATTTGAAAATTGGAGTTGTGTTTGATCAAACGCCTTGTTATCCTCATTTCATACGCTAGGATTCCCCCCCTACTCCAGATGATTAATTTTAGGCGTGTGGTGTGTCAGAGTTTCACCTTGGTCGATGAAATGGAAATTTATCTTATTATAGAGTTAATCCTTATTTCATAAGGTATGTTCCCTGCTCCAGATGTTCAGTCCTAAGTGCGGTGTTGTTAGAGTTTCACATTAATTGAAAAATTGGAATTATGTCTTGTTATGTAGTATTGCTTAATCCTCACTTATTTTTCGCTAGCGTCTAATGTCCATTTTCCATGAACTGACTATGACTTTTATTTTAGTTTTTGTGTCAACAAGTGATGATGACCTGTTTCTTTTTCTGCATTTGTTGAAATTTTCAGTTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAA</genome_strand>
        <mrna_strand>GAACTAGT-CTCGAGTTTTTATTTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203869" ref_strand="+" ref_description="SGN-E203869 [cLEC-17-K4]">
      <seq>tttatttctttcttgtttattcatatatcaaaaatggctaacaatgaggtgattttgttggatttttggcctagcatgtttggcttgaggctgaggattgcacttgctgaaaaagaggttaaatatgagtacagagaagaggatttgccgaacaaaagccctctgcttttgcagatgaaccctattcacaagaaaatccctgttttgattcacaatggtaaaccgatttgtgagtctattattggagttgagtatattgatgaagtttggaaggataaagcccctttgctcccttctgatccttatgagagggcacaagctaggttttgggctgactacattgacaagaagttttattgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="32419" stop="31462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32119" g_stop="31769" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E203869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32119" e_stop="31769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAG</genome_strand>
        <mrna_strand>TTTATTTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224199" ref_strand="-" ref_description="SGN-E224199 [cLEL-19-B5](-)">
      <seq>ttttttttttttttttttttttttaaaaaaaaagcaaatcattatgatgcaataatcgcaaaaccaaacatcaaatcactcatatcaatcatccagtcaaagtaacaagttcagatgaagacacaaaattcaaaagtaaaagcagaacttacactatgaccaaaagaacaaacaatttcaaatcttgaaacaactcaacaaggcaaaatgaagtgctttattcaaatacacattattatgcatatgtttattcaattccaaacttccgccttagcatttgtataaactcaaggaccttatgttggtcaggcaaagacttggccacactgtccctcgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="12842" stop="40023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38651" g_stop="38662" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38663" i_stop="39401" i_length="739">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39402" g_stop="39725" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="336" r_length="324" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E224199" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224199" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38651" e_stop="38662"/>
          <exon e_start="39402" e_stop="39725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTCATTATATACTTCATCGTACTACTTTATAATATGTTCCGTAATAATTAGTCTACTGGTCACCGCTTTCGTCACATGGTGTGAAAATATTATATTCATATAAGCGTTGTAATTTTATAATCATAAATTTTAAAAATAATAACCTTCTTAAACTTCAATCCAAATTACTTGACTAGATTGGTTTTGATAAAAAGAGTAGTACATCAAATTTCATTCCTTTATCATTATTGTCAATTGTTCATTATTATTGACTATCATTAGTATTATACAATATTATTATTTATATAACTCACTCATCATTCTCAACCACAACGTCATTACTAATAAATTATATCTCATAATTTAATAATGAAGAGTCGTAATTTTCACAAAAGAAAATTCAAATGTAACAAGTTCCAGACTTTTGAGGATCCTTGGGTGTAACTTCCAACTCCCAGTCTTCTTCCTTGTCTCCCCTTTCTGGGAGTACATGGATAGTCCTTTTAGGGTTGCTATTTAGATTTCAATCAAAAGTTCAACTTTATTTAGAGTTTAGCCAGTCATTTAAAACTTTAAAACTGATCACTTACACTATAGTCGATAAGAGAGAGTTGTTCAGATGGTAAGTACTCTTCACTTTCAACTCGAAAGTTATGAGTTCGGATCAAAAGGATAGAAGCTCCTACGGAAAGGTAAAAAAGAAAAAATTTGGCCTAAAAAAGATTTCAAACATTGAAATTACAACTCAAAAAGGCACAAATCAAAGAACCTTTTTTTTAAAAAAAAAGCAAATCATTATGATGCAATAATCGCAAAACCAAACATCAAATCACTCATATCAATCATCCAGTCAAAGTAACAAGTTCAGATGAAGACACAAAATTCAAAAGTAAAAGCAGAACTTACACTATGACCAAAAGAACAAACAATTTCAAATCTTGAAACAACTCAACAAGGCAAAATGAAGTGCTTTATTCAAATACACATTATTATGCATATGTTTATTCAATTCCAAACTTCCGCCTTAGCATTTGTATAAACTCAAGGACCTTATGTTGGTCAGGCAAAGACTTGGCCACACTGTCCCTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTAAAAAAAAAGCAAATCATTATGATGCAATAATCGCAAAACCAAACATCAAATCACTCATATCAATCATCCAGTCAAAGTAACAAGTTCAGATGAAGACACAAAATTCAAAAGTAAAAGCAGAACTTACACTATGACCAAAAGAACAAACAATTTCAAATCTTGAAACAACTCAACAAGGCAAAATGAAGTGCTTTATTCAAATACACATTATTATGCATATGTTTATTCAATTCCAAACTTCCGCCTTAGCATTTGTATAAACTCAAGGACCTTATGTTGGTCAGGCAAAGACTTGGCCACACTGTCCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224017" ref_strand="+" ref_description="SGN-E224017 [cLEL-19-B5](-)">
      <seq>gggacagtgtggccaagtctttgcctgaccaacataaggtccttgagtttatacaaatgctaaggcggaagtttggaattgaataaacatatgcataataatgtgtatttgaataaagcacttcattttgccttgttgagttgtttcaagatttgaaattgtttgttcttttggtcatagtgtaagttctgcttttacttttgaattttgtgtcttcatctgaacttgttactttgactggatgattgatatgagtgatttgatgtttggttttgcgattattgcatcataatgatttgctttttttttaaaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="40022" stop="39106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39722" g_stop="39405" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="333"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E224017" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39722" e_stop="39405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACAGTGTGGCCAAGTCTTTGCCTGACCAACATAAGGTCCTTGAGTTTATACAAATGCTAAGGCGGAAGTTTGGAATTGAATAAACATATGCATAATAATGTGTATTTGAATAAAGCACTTCATTTTGCCTTGTTGAGTTGTTTCAAGATTTGAAATTGTTTGTTCTTTTGGTCATAGTGTAAGTTCTGCTTTTACTTTTGAATTTTGTGTCTTCATCTGAACTTGTTACTTTGACTGGATGATTGATATGAGTGATTTGATGTTTGGTTTTGCGATTATTGCATCATAATGATTTGCTTTTTTTTTAAAAAAAAG</genome_strand>
        <mrna_strand>GGGACAGTGTGGCCAAGTCTTTGCCTGACCAACATAAGGTCCTTGAGTTTATACAAATGCTAAGGCGGAAGTTTGGAATTGAATAAACATATGCATAATAATGTGTATTTGAATAAAGCACTTCATTTTGCCTTGTTGAGTTGTTTCAAGATTTGAAATTGTTTGTTCTTTTGGTCATAGTGTAAGTTCTGCTTTTACTTTTGAATTTTGTGTCTTCATCTGAACTTGTTACTTTGACTGGATGATTGATATGAGTGATTTGATGTTTGGTTTTGCGATTATTGCATCATAATGATTTGCTTTTTTTTTAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310100" ref_strand="+" ref_description="SGN-E310100 [cLEZ-8-F14]">
      <seq>tttgtttgaaattttcagttgtatgtttctgcaagaaagatatggggaacaaagggagaagagcaggaggcaggtaagaaagatttcatagaagtacttaaagtgttggagggagaacttggagagaagccttattttggaggagataattttggttttgtggatattgctttgattgggttctatagctggttttatgcttatgagacttatggtaacttcagcgcagaggctgagtgtccaaagtttgtggcttgggctaagaggtgcatgcaaagggacagtgtggccaagtctttgcctgaccaacataaggtccttgagtttatacaaatgctaaggcggaagtttggaattgaataaacatatgcataataatgtgtatttgaataaagcacttcattttgccttgttgagttgtttcaagatttgaaattgtttgttcttttggtcatagtgtaagttctgcttttacttttgaattttgtgtcttcatctgaacttgttactttgactggatgattgatatgagtgatttgatgtttggtttanaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="40299" stop="39150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39999" g_stop="39442" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E310100" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39999" e_stop="39442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTGAAATTTTCAGTTGTATGTTTCTGCAAGAAAGATATGGGGAACAAAGGGAGAAGAGCAGGAGGCAGGTAAGAAAGATTTCATAGAAGTACTTAAAGTGTTGGAGGGAGAACTTGGAGAGAAGCCTTATTTTGGAGGAGATAATTTTGGTTTTGTGGATATTGCTTTGATTGGGTTCTATAGCTGGTTTTATGCTTATGAGACTTATGGTAACTTCAGCGCAGAGGCTGAGTGTCCAAAGTTTGTGGCTTGGGCTAAGAGGTGCATGCAAAGGGACAGTGTGGCCAAGTCTTTGCCTGACCAACATAAGGTCCTTGAGTTTATACAAATGCTAAGGCGGAAGTTTGGAATTGAATAAACATATGCATAATAATGTGTATTTGAATAAAGCACTTCATTTTGCCTTGTTGAGTTGTTTCAAGATTTGAAATTGTTTGTTCTTTTGGTCATAGTGTAAGTTCTGCTTTTACTTTTGAATTTTGTGTCTTCATCTGAACTTGTTACTTTGACTGGATGATTGATATGAGTGATTTGATGTTTGGTTTTGCGATTA</genome_strand>
        <mrna_strand>TTTGTTTGAAATTTTCAGTTGTATGTTTCTGCAAGAAAGATATGGGGAACAAAGGGAGAAGAGCAGGAGGCAGGTAAGAAAGATTTCATAGAAGTACTTAAAGTGTTGGAGGGAGAACTTGGAGAGAAGCCTTATTTTGGAGGAGATAATTTTGGTTTTGTGGATATTGCTTTGATTGGGTTCTATAGCTGGTTTTATGCTTATGAGACTTATGGTAACTTCAGCGCAGAGGCTGAGTGTCCAAAGTTTGTGGCTTGGGCTAAGAGGTGCATGCAAAGGGACAGTGTGGCCAAGTCTTTGCCTGACCAACATAAGGTCCTTGAGTTTATACAAATGCTAAGGCGGAAGTTTGGAATTGAATAAACATATGCATAATAATGTGTATTTGAATAAAGCACTTCATTTTGCCTTGTTGAGTTGTTTCAAGATTTGAAATTGTTTGTTCTTTTGGTCATAGTGTAAGTTCTGCTTTTACTTTTGAATTTTGTGTCTTCATCTGAACTTGTTACTTTGACTGGATGATTGATATGAGTGATTTGATGTTTGGTTTANAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545216" ref_strand="+" ref_description="SGN-E545216 [TUS-67-P6](-)">
      <seq>agaacccttattttgggggagataattttggttttgtggatattgctttgattgggttctatagctggttttatgcttatgagacttatggtaacttcagcgcagaggctgagtgtccaaagtttgtggcttgggctaagaggtgcatgcaaagggacagtgtggccaagtctttgcctgaccaacataaggtccttgagtttatacaaatgctaaggcggaagtttggaattgaataaacatatgcataataatgtgtatttgaataaagcacttcattttgccttgttgagttgtttcaagatttgaaattgtttgttcttttggtcatagtgtaagttctgcttttacttttgaattttgtgtcttcatctgaacttgttactttgactggatgattgatatgagtgatttgatgtttggtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="40175" stop="39150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39875" g_stop="39449" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="457"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E545216" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39875" e_stop="39449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCCTTATTTTGGAGGAGATAATTTTGGTTTTGTGGATATTGCTTTGATTGGGTTCTATAGCTGGTTTTATGCTTATGAGACTTATGGTAACTTCAGCGCAGAGGCTGAGTGTCCAAAGTTTGTGGCTTGGGCTAAGAGGTGCATGCAAAGGGACAGTGTGGCCAAGTCTTTGCCTGACCAACATAAGGTCCTTGAGTTTATACAAATGCTAAGGCGGAAGTTTGGAATTGAATAAACATATGCATAATAATGTGTATTTGAATAAAGCACTTCATTTTGCCTTGTTGAGTTGTTTCAAGATTTGAAATTGTTTGTTCTTTTGGTCATAGTGTAAGTTCTGCTTTTACTTTTGAATTTTGTGTCTTCATCTGAACTTGTTACTTTGACTGGATGATTGATATGAGTGATTTGATGTTTGGTTTT</genome_strand>
        <mrna_strand>AGAACCCTTATTTTGGGGGAGATAATTTTGGTTTTGTGGATATTGCTTTGATTGGGTTCTATAGCTGGTTTTATGCTTATGAGACTTATGGTAACTTCAGCGCAGAGGCTGAGTGTCCAAAGTTTGTGGCTTGGGCTAAGAGGTGCATGCAAAGGGACAGTGTGGCCAAGTCTTTGCCTGACCAACATAAGGTCCTTGAGTTTATACAAATGCTAAGGCGGAAGTTTGGAATTGAATAAACATATGCATAATAATGTGTATTTGAATAAAGCACTTCATTTTGCCTTGTTGAGTTGTTTCAAGATTTGAAATTGTTTGTTCTTTTGGTCATAGTGTAAGTTCTGCTTTTACTTTTGAATTTTGTGTCTTCATCTGAACTTGTTACTTTGACTGGATGATTGATATGAGTGATTTGATGTTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545217" ref_strand="+" ref_description="SGN-E545217 [TUS-67-P6]">
      <seq>gtttgtttgaaattttcagttgtatgtttctgcaagaaagatatggggaacaaagggagaagagcaggaggcaggtaagaaagatttcatagaagtacttaaagtgttggagggagaacttggagagaagccttattttggaggagataattttggttttgtggatattgctttgattgggttctatagctggttttatgcttatgagacttatggtaacttcagcgcagaggctgagtgtccaaagtttgtggcttgggctaagaggtgcatgcaaagggacagtgtggccaagtctttgcctgaccaacataaggtccttgagtttatacaaatgctaaggcggaagtttcgaattgaataaacatatgcataataatgtgtatttgaataaagcacttcattttgccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="40300" stop="39288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40000" g_stop="39588" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E545217" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40000" e_stop="39588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTTGAAATTTTCAGTTGTATGTTTCTGCAAGAAAGATATGGGGAACAAAGGGAGAAGAGCAGGAGGCAGGTAAGAAAGATTTCATAGAAGTACTTAAAGTGTTGGAGGGAGAACTTGGAGAGAAGCCTTATTTTGGAGGAGATAATTTTGGTTTTGTGGATATTGCTTTGATTGGGTTCTATAGCTGGTTTTATGCTTATGAGACTTATGGTAACTTCAGCGCAGAGGCTGAGTGTCCAAAGTTTGTGGCTTGGGCTAAGAGGTGCATGCAAAGGGACAGTGTGGCCAAGTCTTTGCCTGACCAACATAAGGTCCTTGAGTTTATACAAATGCTAAGGCGGAAGTTTGGAATTGAATAAACATATGCATAATAATGTGTATTTGAATAAAGCACTTCATTTTGCCTTG</genome_strand>
        <mrna_strand>GTTTGTTTGAAATTTTCAGTTGTATGTTTCTGCAAGAAAGATATGGGGAACAAAGGGAGAAGAGCAGGAGGCAGGTAAGAAAGATTTCATAGAAGTACTTAAAGTGTTGGAGGGAGAACTTGGAGAGAAGCCTTATTTTGGAGGAGATAATTTTGGTTTTGTGGATATTGCTTTGATTGGGTTCTATAGCTGGTTTTATGCTTATGAGACTTATGGTAACTTCAGCGCAGAGGCTGAGTGTCCAAAGTTTGTGGCTTGGGCTAAGAGGTGCATGCAAAGGGACAGTGTGGCCAAGTCTTTGCCTGACCAACATAAGGTCCTTGAGTTTATACAAATGCTAAGGCGGAAGTTTCGAATTGAATAAACATATGCATAATAATGTGTATTTGAATAAAGCACTTCATTTTGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687945" ref_strand="+" ref_description="SGN-E687945 [T3_tus_81_L21]">
      <seq>gttcttacggggaagccgctctttcctggaaaaaatgtagttcaccaactggatttaatgactgatctgcttggaacgccttcaatggatacaatttctcgtgtgcgtaatgacaaggctaggagatacctaactagcatgagaaagaagcagcctgtttcttttgctcagaaatttccaaatgctgatcctttgtcccttaaacttcttgaaagattacttgcttttgaccccaaggaccgacccactgctgaggaggcactagctgatccttattttaagggtctggctaaatctgaaagggaaccatcatgcaagtcaatttcaaaaatggagttcgaatttgagaggcgaagagtgacgaaggaggatctcagggaattaatattccgggagatactagaatatcatcctcagctgaggaaggattacttgaatggtgtagaaaggactaattttctgtatccgagtgctgttgatcaattcaggaaacagttcgctcacttggaagagaacggtggtaatggcgttccagtggttccgatggacaggaagcatgtctctcttccaaggtctacagttgtacattcaaatccaaaccctttgaaagaacagcctattgttgccaatatgagagaccgacaaaatggtgaagagtcttgcagtagaaactgcagagattctgaaggccttgcaagtagtctaacaagaaccctacaggctcagcccaaaaatgctttagcagccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="42408" stop="44682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42708" g_stop="42809" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42810" i_stop="42895" i_length="86">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42896" g_stop="43051" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="258" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43052" i_stop="43163" i_length="112">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43164" g_stop="43375" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="470" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43376" i_stop="43458" i_length="83">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43459" g_stop="43560" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="572" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43561" i_stop="44212" i_length="652">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44213" g_stop="44382" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="742" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44383" i_stop="44486" i_length="104">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.739" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44487" g_stop="44494" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="750" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E687945" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42708" e_stop="42809"/>
          <exon e_start="42896" e_stop="43051"/>
          <exon e_start="43164" e_stop="43375"/>
          <exon e_start="43459" e_stop="43560"/>
          <exon e_start="44213" e_stop="44382"/>
          <exon e_start="44487" e_stop="44494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTACGGGGAAGCCGCTCTTTCCTGGAAAAAATGTAGTTCACCAACTGGATTTAATGACTGATCTGCTTGGAACGCCTTCAATGGATACAATTTCTCGTGTATGTGAATTCAATTAACATTACGTTTTTGACAATTTTTCCTCAAAACTTGTGTTTCTCATTAGACTTTTTTATGGCTGTTGCAGGTGCGTAATGACAAGGCTAGGAGATACCTAACTAGCATGAGAAAGAAGCAGCCTGTTTCTTTTGCTCAGAAATTTCCAAATGCTGATCCTTTGTCCCTTAAACTTCTTGAAAGATTACTTGCTTTTGACCCCAAGGACCGACCCACTGCTGAGGAGGTTCGTGTTAGCATGCCGATCATACTAATTTTGAGCTTTTCTTTTGGATATTTTAGTATAATTTGTTCTCTTGCATGGTAATTACTAATACACCCCCCACCCAACAAATCAGGCACTAGCTGATCCTTATTTTAAGGGTCTGGCTAAATCTGAAAGGGAACCATCATGCAAGTCAATTTCAAAAATGGAGTTCGAATTTGAGAGGCGAAGAGTGACGAAGGAGGATCTCAGGGAATTAATATTCCGGGAGATACTAGAATATCATCCTCAGCTGAGGAAGGATTACTTGAATGGTGTAGAAAGGACTAATTTTCTGTATCCGAGGTAGTATATTTTTCTTGACATTTGTGCATCAGCTTACTCGTCTAAACAAAGGATTACTGACTACATATTGCTTTTCCTTGCAGTGCTGTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAGGTGATTATGAGTCCTGGTGCTCAAATTTCCTCCTTTATAACATCGTCTAATCTAGGAAGAAGATCAAATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTGTATTGCAATTCTGTGTTAGTTACCATTCTAGGAAGAAGATCAAATCTTTCCTTTTATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTATATTGCAATTCTGTGTTAGTTACCATTCTCCAAAAAAAAATAAAAATAAAATTGCAATTCTGTGTTAATATCCTTCTATATATTTACATAGTATGTTTAATCGGGCCATCACTAGTTCAGATATTCAAATACTAGATTGCTTATTAAATTCATGCTTTATATGCATCTTAGTTTTGGCTTCAGATGTAAATTTGTATATGCAATCATACAATATCTGTCAGTCTTTGGTTTGCATTTTTTAAGATGAATGAATCAAAAGTTTATTGTATAACTTGTTTGTTTGGTGTTATTTTAAGTTAGAAATGATAACACGGTGATTCTATTGCAGGTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAGGTATTTTCCGTCAATGATGAAATACTTTTCTACTTTGACTTTCTGTAATACTGTGATGTTTCCAATGATGCTCATATGGTTCACAATCTTCTATTTAAATCCAGCAGCCAAA</genome_strand>
        <mrna_strand>GTTCTTACGGGGAAGCCGCTCTTTCCTGGAAAAAATGTAGTTCACCAACTGGATTTAATGACTGATCTGCTTGGAACGCCTTCAATGGATACAATTTCTCGT......................................................................................GTGCGTAATGACAAGGCTAGGAGATACCTAACTAGCATGAGAAAGAAGCAGCCTGTTTCTTTTGCTCAGAAATTTCCAAATGCTGATCCTTTGTCCCTTAAACTTCTTGAAAGATTACTTGCTTTTGACCCCAAGGACCGACCCACTGCTGAGGAG................................................................................................................GCACTAGCTGATCCTTATTTTAAGGGTCTGGCTAAATCTGAAAGGGAACCATCATGCAAGTCAATTTCAAAAATGGAGTTCGAATTTGAGAGGCGAAGAGTGACGAAGGAGGATCTCAGGGAATTAATATTCCGGGAGATACTAGAATATCATCCTCAGCTGAGGAAGGATTACTTGAATGGTGTAGAAAGGACTAATTTTCTGTATCCGAG...................................................................................TGCTGTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCCAAAAATGCTTTAG........................................................................................................CAGCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328422" ref_strand="+" ref_description="SGN-E328422 [cTOC-21-N11]">
      <seq>ttcttacggggaagccgctctttcctggaaaaaatgtagttcaccaactggatttaatgactgatctgcttggaacgccttcaatggatacaatttctcgtgtgcgtaatgacaaggctaggagatacctaactagcatgagaaagaagcagcctgtttcttttgctcagaaatttccaaatgctgatcctttgtcccttaaacttcttgaaagattacttgcttttgaccccaaggaccgacccactgctgaggaggcactagctgatccttattttaagggtctggctaaatctgaaagggaaccatcatgcaagtcaatttcaaaaatggagttcgaatttgagaggcgaagagtgacgaaggaggatctcagggaattaatattccgggagatactagaatatcatcctcagctgaggaaggattacttgaatggtgtagaaaggactaattttctgtatccgagtgctgttgatcaattcaggaaacagttcgctcacttggaagagaacggtggtaatggcgttccagtggttccgatggacaggaagcatgtctctcttccaaggtctacagttgtacattcaaatccaaaccctttgaaagaacagcctattgttgccaatatgagagaccgacaaaatggtgaagagtcttgcagtagaaactgcagagattctgaaggccttgcaagtagtctaacaagaaccctacaggctcagccaagaaatgctttagcagccaaacaggaaaagttgttggtcccggtttggcttatgattcgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="42409" stop="44837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42709" g_stop="42809" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42810" i_stop="42895" i_length="86">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42896" g_stop="43051" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="257" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43052" i_stop="43163" i_length="112">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43164" g_stop="43375" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="469" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43376" i_stop="43458" i_length="83">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43459" g_stop="43560" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="571" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43561" i_stop="44212" i_length="652">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44213" g_stop="44382" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="741" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44383" i_stop="44486" i_length="104">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44487" g_stop="44537" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="791" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E328422" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42709" e_stop="42809"/>
          <exon e_start="42896" e_stop="43051"/>
          <exon e_start="43164" e_stop="43375"/>
          <exon e_start="43459" e_stop="43560"/>
          <exon e_start="44213" e_stop="44382"/>
          <exon e_start="44487" e_stop="44537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTACGGGGAAGCCGCTCTTTCCTGGAAAAAATGTAGTTCACCAACTGGATTTAATGACTGATCTGCTTGGAACGCCTTCAATGGATACAATTTCTCGTGTATGTGAATTCAATTAACATTACGTTTTTGACAATTTTTCCTCAAAACTTGTGTTTCTCATTAGACTTTTTTATGGCTGTTGCAGGTGCGTAATGACAAGGCTAGGAGATACCTAACTAGCATGAGAAAGAAGCAGCCTGTTTCTTTTGCTCAGAAATTTCCAAATGCTGATCCTTTGTCCCTTAAACTTCTTGAAAGATTACTTGCTTTTGACCCCAAGGACCGACCCACTGCTGAGGAGGTTCGTGTTAGCATGCCGATCATACTAATTTTGAGCTTTTCTTTTGGATATTTTAGTATAATTTGTTCTCTTGCATGGTAATTACTAATACACCCCCCACCCAACAAATCAGGCACTAGCTGATCCTTATTTTAAGGGTCTGGCTAAATCTGAAAGGGAACCATCATGCAAGTCAATTTCAAAAATGGAGTTCGAATTTGAGAGGCGAAGAGTGACGAAGGAGGATCTCAGGGAATTAATATTCCGGGAGATACTAGAATATCATCCTCAGCTGAGGAAGGATTACTTGAATGGTGTAGAAAGGACTAATTTTCTGTATCCGAGGTAGTATATTTTTCTTGACATTTGTGCATCAGCTTACTCGTCTAAACAAAGGATTACTGACTACATATTGCTTTTCCTTGCAGTGCTGTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAGGTGATTATGAGTCCTGGTGCTCAAATTTCCTCCTTTATAACATCGTCTAATCTAGGAAGAAGATCAAATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTGTATTGCAATTCTGTGTTAGTTACCATTCTAGGAAGAAGATCAAATCTTTCCTTTTATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTATATTGCAATTCTGTGTTAGTTACCATTCTCCAAAAAAAAATAAAAATAAAATTGCAATTCTGTGTTAATATCCTTCTATATATTTACATAGTATGTTTAATCGGGCCATCACTAGTTCAGATATTCAAATACTAGATTGCTTATTAAATTCATGCTTTATATGCATCTTAGTTTTGGCTTCAGATGTAAATTTGTATATGCAATCATACAATATCTGTCAGTCTTTGGTTTGCATTTTTTAAGATGAATGAATCAAAAGTTTATTGTATAACTTGTTTGTTTGGTGTTATTTTAAGTTAGAAATGATAACACGGTGATTCTATTGCAGGTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAGGTATTTTCCGTCAATGATGAAATACTTTTCTACTTTGACTTTCTGTAATACTGTGATGTTTCCAATGATGCTCATATGGTTCACAATCTTCTATTTAAATCCAGCAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAA</genome_strand>
        <mrna_strand>TTCTTACGGGGAAGCCGCTCTTTCCTGGAAAAAATGTAGTTCACCAACTGGATTTAATGACTGATCTGCTTGGAACGCCTTCAATGGATACAATTTCTCGT......................................................................................GTGCGTAATGACAAGGCTAGGAGATACCTAACTAGCATGAGAAAGAAGCAGCCTGTTTCTTTTGCTCAGAAATTTCCAAATGCTGATCCTTTGTCCCTTAAACTTCTTGAAAGATTACTTGCTTTTGACCCCAAGGACCGACCCACTGCTGAGGAG................................................................................................................GCACTAGCTGATCCTTATTTTAAGGGTCTGGCTAAATCTGAAAGGGAACCATCATGCAAGTCAATTTCAAAAATGGAGTTCGAATTTGAGAGGCGAAGAGTGACGAAGGAGGATCTCAGGGAATTAATATTCCGGGAGATACTAGAATATCATCCTCAGCTGAGGAAGGATTACTTGAATGGTGTAGAAAGGACTAATTTTCTGTATCCGAG...................................................................................TGCTGTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAG........................................................................................................CAGCCAAA-CAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727112" ref_strand="+" ref_description="SGN-E727112 [LA13DA12]">
      <seq>gaaatttccaaatgctgatcctttgtcccttaaacttcttgaaagattacttgcttttgaccccaaggaccgacccactgctgaggaggcactagctgatccttattttaagggtctggctaaatctgaaagggaaccatcatgcaagtcaatttcaaaaatggagttcgaatttgagaggcgaagagtgacgaaggaggatctcagggaattaatattccgggagatactagaatatcatcctcagctgaggaaggattacttgaatggtgtagaaaggactaattttctgtatccgagtgctgttgatcaattcaggaaacagttcgctcacttggaagagaacggtggtaatggcgttccagtggttccgatggacaggaagcatgtctctcttccaaggtctacagttgtacattcaaatccaaaccctttgaaagaacagcctattgttgccaatatgagagaccgacaaaatggtgaagagtcttgcagtagaaactgcagagattctgaaggccttgcaagtagtctaacaagaaccctacaggctcagccaagaaatgctttagccaaaccaggaaaagttgttggtcccggtttggcttatgattcgggaaatagagaaaaatatgatcctaggtctcaagtcaggaatgcagtaggcccccctcagattatgtcttcagtttacagctacgacagaagtggggtggtgaaacaagaaaggtctgttgagacagagagggatatgaattgtcattcaaagccaatggcaccatgtggaatggctgctaagttagccccaaatattgctataaatattgatagcaacccattctatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="42664" stop="45063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42964" g_stop="43051" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43052" i_stop="43163" i_length="112">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43164" g_stop="43375" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="300" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43376" i_stop="43458" i_length="83">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43459" g_stop="43560" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="402" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43561" i_stop="44212" i_length="652">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44213" g_stop="44382" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="572" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44383" i_stop="44489" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44490" g_stop="44763" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="846" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E727112" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42964" e_stop="43051"/>
          <exon e_start="43164" e_stop="43375"/>
          <exon e_start="43459" e_stop="43560"/>
          <exon e_start="44213" e_stop="44382"/>
          <exon e_start="44490" e_stop="44763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTCCAAATGCTGATCCTTTGTCCCTTAAACTTCTTGAAAGATTACTTGCTTTTGACCCCAAGGACCGACCCACTGCTGAGGAGGTTCGTGTTAGCATGCCGATCATACTAATTTTGAGCTTTTCTTTTGGATATTTTAGTATAATTTGTTCTCTTGCATGGTAATTACTAATACACCCCCCACCCAACAAATCAGGCACTAGCTGATCCTTATTTTAAGGGTCTGGCTAAATCTGAAAGGGAACCATCATGCAAGTCAATTTCAAAAATGGAGTTCGAATTTGAGAGGCGAAGAGTGACGAAGGAGGATCTCAGGGAATTAATATTCCGGGAGATACTAGAATATCATCCTCAGCTGAGGAAGGATTACTTGAATGGTGTAGAAAGGACTAATTTTCTGTATCCGAGGTAGTATATTTTTCTTGACATTTGTGCATCAGCTTACTCGTCTAAACAAAGGATTACTGACTACATATTGCTTTTCCTTGCAGTGCTGTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAGGTGATTATGAGTCCTGGTGCTCAAATTTCCTCCTTTATAACATCGTCTAATCTAGGAAGAAGATCAAATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTGTATTGCAATTCTGTGTTAGTTACCATTCTAGGAAGAAGATCAAATCTTTCCTTTTATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTATATTGCAATTCTGTGTTAGTTACCATTCTCCAAAAAAAAATAAAAATAAAATTGCAATTCTGTGTTAATATCCTTCTATATATTTACATAGTATGTTTAATCGGGCCATCACTAGTTCAGATATTCAAATACTAGATTGCTTATTAAATTCATGCTTTATATGCATCTTAGTTTTGGCTTCAGATGTAAATTTGTATATGCAATCATACAATATCTGTCAGTCTTTGGTTTGCATTTTTTAAGATGAATGAATCAAAAGTTTATTGTATAACTTGTTTGTTTGGTGTTATTTTAAGTTAGAAATGATAACACGGTGATTCTATTGCAGGTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAGGTATTTTCCGTCAATGATGAAATACTTTTCTACTTTGACTTTCTGTAATACTGTGATGTTTCCAATGATGCTCATATGGTTCACAATCTTCTATTTAAATCCAGCAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATAT</genome_strand>
        <mrna_strand>GAAATTTCCAAATGCTGATCCTTTGTCCCTTAAACTTCTTGAAAGATTACTTGCTTTTGACCCCAAGGACCGACCCACTGCTGAGGAG................................................................................................................GCACTAGCTGATCCTTATTTTAAGGGTCTGGCTAAATCTGAAAGGGAACCATCATGCAAGTCAATTTCAAAAATGGAGTTCGAATTTGAGAGGCGAAGAGTGACGAAGGAGGATCTCAGGGAATTAATATTCCGGGAGATACTAGAATATCATCCTCAGCTGAGGAAGGATTACTTGAATGGTGTAGAAAGGACTAATTTTCTGTATCCGAG...................................................................................TGCTGTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAG...........................................................................................................CCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAAATATTGCTATAAATATTGATAGCAACCCATTCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704353" ref_strand="+" ref_description="SGN-E704353 [FA24AC03]">
      <seq>ctgaaagggaaccatcatgcaagtcaatttcaaaaatggagttcgaatttgagaggcgaagagtgacgaaggaggatctcagggaattaatattccgggagatactagaatatcatcctcagctgaggaaggattacttgaatggtgtagaaaggactaattttctgtatccgagtgctgttgatcaattcaggaaacagttcgctcacttggaagagaacggtggtaatggcgttccagtggttccgatggacaggaagcatgtctctcttccaaggtctacagttgtacattcaaatccaaaccctttgaaagaacagcctattgttgccaatatgagagaccgacaaaatggtgaagagtcttgcagtagaaactgcagagattctgaaggccttgcaagtagtctaacaagaaccctacaggctcagccaagaaatgctttagccaaaccaggaaaagttgttggtcccggtttggcttatgattcgggaaatagagaaaaatatgatcctaggtctcaagtcaggaatgcagtaggcccccctcagattatgtcttcagtttacagctacgacagaagtggggtggtgaaacaagaaaggtctgttgagacagagagggatatgaattgtcattcaaagccaatggcaccatgtggaatggctgctaagttagccccagatattgctataaatattgatagcaacccattctatatgatgcgagctggagttacaaaaccagatcgtgttgatgaccgaatcaccatagacacaaacttattgcaggctaaatcccaatatggtggaattggagttgcggcggcagcagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="42901" stop="45181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43201" g_stop="43375" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43376" i_stop="43458" i_length="83">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43459" g_stop="43560" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="277" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43561" i_stop="44212" i_length="652">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44213" g_stop="44382" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="447" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44383" i_stop="44489" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44490" g_stop="44881" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="839" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E704353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43201" e_stop="43375"/>
          <exon e_start="43459" e_stop="43560"/>
          <exon e_start="44213" e_stop="44382"/>
          <exon e_start="44490" e_stop="44881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAGGGAACCATCATGCAAGTCAATTTCAAAAATGGAGTTCGAATTTGAGAGGCGAAGAGTGACGAAGGAGGATCTCAGGGAATTAATATTCCGGGAGATACTAGAATATCATCCTCAGCTGAGGAAGGATTACTTGAATGGTGTAGAAAGGACTAATTTTCTGTATCCGAGGTAGTATATTTTTCTTGACATTTGTGCATCAGCTTACTCGTCTAAACAAAGGATTACTGACTACATATTGCTTTTCCTTGCAGTGCTGTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAGGTGATTATGAGTCCTGGTGCTCAAATTTCCTCCTTTATAACATCGTCTAATCTAGGAAGAAGATCAAATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTGTATTGCAATTCTGTGTTAGTTACCATTCTAGGAAGAAGATCAAATCTTTCCTTTTATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTATATTGCAATTCTGTGTTAGTTACCATTCTCCAAAAAAAAATAAAAATAAAATTGCAATTCTGTGTTAATATCCTTCTATATATTTACATAGTATGTTTAATCGGGCCATCACTAGTTCAGATATTCAAATACTAGATTGCTTATTAAATTCATGCTTTATATGCATCTTAGTTTTGGCTTCAGATGTAAATTTGTATATGCAATCATACAATATCTGTCAGTCTTTGGTTTGCATTTTTTAAGATGAATGAATCAAAAGTTTATTGTATAACTTGTTTGTTTGGTGTTATTTTAAGTTAGAAATGATAACACGGTGATTCTATTGCAGGTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAGGTATTTTCCGTCAATGATGAAATACTTTTCTACTTTGACTTTCTGTAATACTGTGATGTTTCCAATGATGCTCATATGGTTCACAATCTTCTATTTAAATCCAGCAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACT</genome_strand>
        <mrna_strand>CTGAAAGGGAACCATCATGCAAGTCAATTTCAAAAATGGAGTTCGAATTTGAGAGGCGAAGAGTGACGAAGGAGGATCTCAGGGAATTAATATTCCGGGAGATACTAGAATATCATCCTCAGCTGAGGAAGGATTACTTGAATGGTGTAGAAAGGACTAATTTTCTGTATCCGAG...................................................................................TGCTGTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAG...........................................................................................................CCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735507" ref_strand="+" ref_description="SGN-E735507 [LC01DF04]">
      <seq>ccttgatcaattcaggaaacagttcgctcacttggaagagaacggtggtaatggcgttccagtggttccgatggacaggaagcatgtctctcttccaaggtctacagttgtacattcaaatccaaaccctttgaaagaacagcctattgttgccaatatgagagaccgacaaaatggtgaagagtcttgcagtagaaactgcagagattctgaaggccttgcaagtagtctaacaagaaccctacaggctcagccaagaaatgctttagcagccaaaccaggaaaagttgttggtcccggtttggcttatgattcgggaaatagagaaaaatatgatcctaggtctcaagtcaggaatgcagtaggcccccctcagattatgtcttcagtttacagctacgacagaagtggggtggtgaaacaagaaaggtctgttgagacagagagggatatgaattgtcattcaaagccaatggcaccatgtggaatggctgctaagttagccccagatattgctataaatattgatagcaacccattctatatgatgcgagctggagttacaaaaccagatcgtgttgatgaccgaatcaccatagacacaaacttattgcaggctaaatcccaatatggtggaattggagttgcggcggcagcagctactagtggtgcagctcataggaaagtagggactgttcagtatggtatgtccaggatgtactagaaaatacacctccaaagtggtgaaattatgaatacatacatgttgggtggggttggagaaagtccatctcaggaatggtggcagaaactctttggacaaaagggtatggtgggttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="43164" stop="45359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43462" g_stop="43560" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43561" i_stop="44212" i_length="652">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44213" g_stop="44382" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="269" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44383" i_stop="44486" i_length="104">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44487" g_stop="45059" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="842" r_length="573" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E735507" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43462" e_stop="43560"/>
          <exon e_start="44213" e_stop="44382"/>
          <exon e_start="44487" e_stop="45059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAGGTGATTATGAGTCCTGGTGCTCAAATTTCCTCCTTTATAACATCGTCTAATCTAGGAAGAAGATCAAATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTGTATTGCAATTCTGTGTTAGTTACCATTCTAGGAAGAAGATCAAATCTTTCCTTTTATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTATATTGCAATTCTGTGTTAGTTACCATTCTCCAAAAAAAAATAAAAATAAAATTGCAATTCTGTGTTAATATCCTTCTATATATTTACATAGTATGTTTAATCGGGCCATCACTAGTTCAGATATTCAAATACTAGATTGCTTATTAAATTCATGCTTTATATGCATCTTAGTTTTGGCTTCAGATGTAAATTTGTATATGCAATCATACAATATCTGTCAGTCTTTGGTTTGCATTTTTTAAGATGAATGAATCAAAAGTTTATTGTATAACTTGTTTGTTTGGTGTTATTTTAAGTTAGAAATGATAACACGGTGATTCTATTGCAGGTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAGGTATTTTCCGTCAATGATGAAATACTTTTCTACTTTGACTTTCTGTAATACTGTGATGTTTCCAATGATGCTCATATGGTTCACAATCTTCTATTTAAATCCAGCAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACTAGTGGTGCAGCTCATAGGAAAGTAGGGACTGTTCAGTATGGTATGTCCAGGATGTACTAGAAAATACACCTCCAAAGTGGTGAAATTATGAATACATACATGTTGGGTGGGGTTGGAGAAAGTCCATCTCAGGAATGGTGGCAGAAACTCTTTGGACAAAAGGGTATGGTGGGTTGTA</genome_strand>
        <mrna_strand>CCTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAG........................................................................................................CAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACTAGTGGTGCAGCTCATAGGAAAGTAGGGACTGTTCAGTATGGTATGTCCAGGATGTACTAGAAAATACACCTCCAAAGTGGTGAAATTATGAATACATACATGTTGGGTGGGGTTGGAGAAAGTCCATCTCAGGAATGGTGGCAGAAACTCTTTGGACAAAAGGGTATGGTGGGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739360" ref_strand="+" ref_description="SGN-E739360 [LC17AE12]">
      <seq>gctgatcaattcaggaaacagttcgctcacttggaagagaacggtggtaatggcgttccagtggttccgatggacaggaagcatgtctctcttccaaggtctacagttgtacattcaaatccaaaccctttgaaagaacagcctattgttgccaatatgagagaccgacaaaatggtgaagagtcttgcagtagaaactgcagagattctgaaggccttgcaagtagtctaacaagaaccctacaggctcagccaagaaatgctttagcagccaaaccaggaaaagttgttggtcccggtttggcttatgattcgggaaatagagaaaaatatgatcctaggtctcaagtcaggaatgcagtaggcccccctcagattatgtcttcagtttacagctacgacagaagtggggtggtgaaacaagaaaggtctgttgagacagagagggatatgaattgtcattcaaagccaatggcaccatgtggaatggctgctaagttagccccagatattgctataaatattgatagcaacccattctatatgatgcgagctggagttacaaaaccagatcgtgttgatgaccgaatcaccatagacacaaacttattgcaggctaaatcccaatatggtggaattggagttgcggcggcagcagctactagtggtgcagctcataggaaagtagggactgttcagtatggtatgtccaggatgtactagaaaatacacctccaaagtggtgaaattatgaatacatacatgttgggtggggttggagaaagtccatctcaggaatggtggcagaaactctttggacaaaagggtatggtgggttgtacaggcaggagaatctgcaggggatctagtcctattttctaattgtcagtttttcctagttgttatcacatgaagactatatcatattttcatcatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="43163" stop="45458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43463" g_stop="43560" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43561" i_stop="44212" i_length="652">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44213" g_stop="44382" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="268" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44383" i_stop="44486" i_length="104">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44487" g_stop="45165" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="947" r_length="679" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E739360" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>947</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43463" e_stop="43560"/>
          <exon e_start="44213" e_stop="44382"/>
          <exon e_start="44487" e_stop="45165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAGGTGATTATGAGTCCTGGTGCTCAAATTTCCTCCTTTATAACATCGTCTAATCTAGGAAGAAGATCAAATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTGTATTGCAATTCTGTGTTAGTTACCATTCTAGGAAGAAGATCAAATCTTTCCTTTTATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTATATTGCAATTCTGTGTTAGTTACCATTCTCCAAAAAAAAATAAAAATAAAATTGCAATTCTGTGTTAATATCCTTCTATATATTTACATAGTATGTTTAATCGGGCCATCACTAGTTCAGATATTCAAATACTAGATTGCTTATTAAATTCATGCTTTATATGCATCTTAGTTTTGGCTTCAGATGTAAATTTGTATATGCAATCATACAATATCTGTCAGTCTTTGGTTTGCATTTTTTAAGATGAATGAATCAAAAGTTTATTGTATAACTTGTTTGTTTGGTGTTATTTTAAGTTAGAAATGATAACACGGTGATTCTATTGCAGGTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAGGTATTTTCCGTCAATGATGAAATACTTTTCTACTTTGACTTTCTGTAATACTGTGATGTTTCCAATGATGCTCATATGGTTCACAATCTTCTATTTAAATCCAGCAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACTAGTGGTGCAGCTCATAGGAAAGTAGGGACTGTTCAGTATGGTATGTCCAGGATGTACTAGAAAATACACCTCCAAAGTGGTGAAATTATGAATACATACATGTTGGGTGGGGTTGGAGAAAGTCCATCTCAGGAATGGTGGCAGAAACTCTTTGGACAAAAGGGTATGGTGGGTTGTACAGGCAGGAGAATCTGCAGGGGATCTAGTCCTATTTCCTAATTGTCAGTTTTTCCTAGTTGTTATCACATGAAGACTATATCATATTTTCATCATGAAATTCATTT</genome_strand>
        <mrna_strand>GCTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAG........................................................................................................CAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACTAGTGGTGCAGCTCATAGGAAAGTAGGGACTGTTCAGTATGGTATGTCCAGGATGTACTAGAAAATACACCTCCAAAGTGGTGAAATTATGAATACATACATGTTGGGTGGGGTTGGAGAAAGTCCATCTCAGGAATGGTGGCAGAAACTCTTTGGACAAAAGGGTATGGTGGGTTGTACAGGCAGGAGAATCTGCAGGGGATCTAGTCCTATTTTCTAATTGTCAGTTTTTCCTAGTTGTTATCACATGAAGACTATATCATATTTTCATCATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740830" ref_strand="+" ref_description="SGN-E740830 [LC23AC11]">
      <seq>gttgatcaattcaggaaacagttcgctcacttggaagagaacggtggtaatggcgttccagtggttccgatggacaggaagcatgtctctcttccaaggtctacagttgtacattcaaatccaaaccctttgaaagaacagcctattgttgccaatatgagagaccgacaaaatggtgaagagtcttgcagtagaaactgcagagattctgaaggccttgcaagtagtctaacaagaaccctacaggctcagccaagaaatgctttagcagccaaaccaggaaaagttgttggtcccggtttggcttatgattcgggaaatagagaaaaatatgatcctaggtctcaagtcaggaatgcagtaggcccccctcagattatgtcttcagtttacagctacgacagaagtggggtggtgaaacaagaaaggtctgttgagacagagagggatatgaattgtcattcaaagccaatggcaccatgtggaatggctgctaagttagccccagatattgctataaatattgatagcaacccattctatatgatgcgagctggagttacaaaaccagatcgtgttgatgaccgaatcaccatagacacaaacttattgcaggctaaatcccaatatggtggaattggagttgcggcggcagcagctactagtggtgcagctcataggaaagtagggactgttcagtatggtatgtccaggatgtactagaaaatacacctccaaagtggtgaaattatgaatacatacatgttgggtggggttggagaaagtccatctcangaatggtggcagaaactctttggacaaaagggtatggtgggttgtacaggcaggagaatctgcaggggatctagtcctattttcctaatgtcagtttttcctagttgttatcccatgaagactatatcatattttcatcatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="43163" stop="45458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43463" g_stop="43560" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43561" i_stop="44212" i_length="652">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44213" g_stop="44382" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="268" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44383" i_stop="44486" i_length="104">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44487" g_stop="45157" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="939" r_length="671" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E740830" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43463" e_stop="43560"/>
          <exon e_start="44213" e_stop="44382"/>
          <exon e_start="44487" e_stop="45157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAGGTGATTATGAGTCCTGGTGCTCAAATTTCCTCCTTTATAACATCGTCTAATCTAGGAAGAAGATCAAATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTGTATTGCAATTCTGTGTTAGTTACCATTCTAGGAAGAAGATCAAATCTTTCCTTTTATATGACAACTTGGTATAAAGAATTTGAGTTGACTGGATGTTTGGTGCTATTAGGGAAACCAGTTGATGTTTCGGCTTGGGACGTTCCCTGCATGCACTTATATTGCAATTCTGTGTTAGTTACCATTCTCCAAAAAAAAATAAAAATAAAATTGCAATTCTGTGTTAATATCCTTCTATATATTTACATAGTATGTTTAATCGGGCCATCACTAGTTCAGATATTCAAATACTAGATTGCTTATTAAATTCATGCTTTATATGCATCTTAGTTTTGGCTTCAGATGTAAATTTGTATATGCAATCATACAATATCTGTCAGTCTTTGGTTTGCATTTTTTAAGATGAATGAATCAAAAGTTTATTGTATAACTTGTTTGTTTGGTGTTATTTTAAGTTAGAAATGATAACACGGTGATTCTATTGCAGGTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAGGTATTTTCCGTCAATGATGAAATACTTTTCTACTTTGACTTTCTGTAATACTGTGATGTTTCCAATGATGCTCATATGGTTCACAATCTTCTATTTAAATCCAGCAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACTAGTGGTGCAGCTCATAGGAAAGTAGGGACTGTTCAGTATGGTATGTCCAGGATGTACTAGAAAATACACCTCCAAAGTGGTGAAATTATGAATACATACATGTTGGGTGGGGTTGGAGAAAGTCCATCTCAGGAATGGTGGCAGAAACTCTTTGGACAAAAGGGTATGGTGGGTTGTACAGGCAGGAGAATCTGCAGGGGATCTAGTCCTATTTCCTAATTGTCAGTTTTTCCTAGTTGTTATCACATGAAGACTATATCATATTTTCATCATGAA</genome_strand>
        <mrna_strand>GTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAG........................................................................................................CAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACTAGTGGTGCAGCTCATAGGAAAGTAGGGACTGTTCAGTATGGTATGTCCAGGATGTACTAGAAAATACACCTCCAAAGTGGTGAAATTATGAATACATACATGTTGGGTGGGGTTGGAGAAAGTCCATCTCANGAATGGTGGCAGAAACTCTTTGGACAAAAGGGTATGGTGGGTTGTACAGGCAGGAGAATCTGCAGGGGATCTAGTCCTATTTTCCTAATGTCAGTTTTTCCTAGTTGTTATCCCATGAAGACTATATCATATTTTCATCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705676" ref_strand="+" ref_description="SGN-E705676 [FA27DC11]">
      <seq>ccctccgaaagaacagcctattgttgccaatatgagagaccgactaaatggtgaagagtcttgcagtagaaactgcagagattctgaaggccttgcaagtagtctaacaagaaccctacaggctcagccaagaaatgctttagcagccaaaccaggaaaagttgttggtcccggtttggcttatgattcgggaaatagagaaaaatatgatcctaggtctcaagtcaggaatgcagtaggcccccctcagattatgtcttcagtttacagctacgacagaagtggggtggtgaaacaagaaaggtctgttgagacagagagggatatgaattgtcattcaaagccaatggcaccatgtggaatggctgctaagttagccccagatattgctataaatattgatagcaacccattctatatgatgcgagctggagttacaaaaccagatcgtgttgatgaccgaatcaccatagacacaaacttattgcaggctaaatcccaatatggtggaattggagttgcggcggcagcagctactagtggtgcagctcataggaaagtagggactgttcagtatggtatgtccaggatgtactagaaaatacacctccaaagtggtgaaattatgaatacatacatgttgggtggggttggagaaagtccatctcaggaatggtggcagaaactctttggacaaaagggtatggtgggttgtacaggcaggagaatctgcaggggatctagtcctatttcctaattgtcagtttttcctagttgttatcacatgaagactatatcatattttcatcatgaaattcattttagtgatggtaatgtcccctccccttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="43940" stop="45495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44240" g_stop="44382" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44383" i_stop="44486" i_length="104">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44487" g_stop="45195" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="852" r_length="709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E705676" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44240" e_stop="44382"/>
          <exon e_start="44487" e_stop="45195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAGGTATTTTCCGTCAATGATGAAATACTTTTCTACTTTGACTTTCTGTAATACTGTGATGTTTCCAATGATGCTCATATGGTTCACAATCTTCTATTTAAATCCAGCAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACTAGTGGTGCAGCTCATAGGAAAGTAGGGACTGTTCAGTATGGTATGTCCAGGATGTACTAGAAAATACACCTCCAAAGTGGTGAAATTATGAATACATACATGTTGGGTGGGGTTGGAGAAAGTCCATCTCAGGAATGGTGGCAGAAACTCTTTGGACAAAAGGGTATGGTGGGTTGTACAGGCAGGAGAATCTGCAGGGGATCTAGTCCTATTTCCTAATTGTCAGTTTTTCCTAGTTGTTATCACATGAAGACTATATCATATTTTCATCATGAAATTCATTTTAGTGATGGTAATGTCCCCTCCCCTTCTCC</genome_strand>
        <mrna_strand>CCCTCCGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACTAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAG........................................................................................................CAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACTAGTGGTGCAGCTCATAGGAAAGTAGGGACTGTTCAGTATGGTATGTCCAGGATGTACTAGAAAATACACCTCCAAAGTGGTGAAATTATGAATACATACATGTTGGGTGGGGTTGGAGAAAGTCCATCTCAGGAATGGTGGCAGAAACTCTTTGGACAAAAGGGTATGGTGGGTTGTACAGGCAGGAGAATCTGCAGGGGATCTAGTCCTATTTCCTAATTGTCAGTTTTTCCTAGTTGTTATCACATGAAGACTATATCATATTTTCATCATGAAATTCATTTTAGTGATGGTAATGTCCCCTCCCCTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351935" ref_strand="+" ref_description="SGN-E351935 [cTOS-8-F18]">
      <seq>aggaattagagaagagggttaaggaaatgattgagaaagccgcagagttggagaagaaattgatggagaaggaaaggattattgctgaaagatttgttgctagcaatattaatggcattcctgtgggtgatgatagcgttggttttcttggtggtgatgtaaacttgccagtggttgctgcatcatctgttgtcgcagttgcagtgattggcgttatttgctatcttcgatacggacgaaaagcgtaaacccttagcttgatcttcaataagttttagtctttttggttttgtgctgatcaagctttggaatttacagttttgatagttctttggttatgttggattattagttaactttttgatcataatcagataatagattacactattatggtgctgaaatatgtttgtttgttaagctggagatagttgacatacttgtaatagtgcttctttctcatttctatgaatttgattacaatggttttgtagttctttccttggtgatgtaattgcttataagagttgctgaatctgtatgttatagtgtgtttaagtcgaatgattgaattgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="54774" stop="55951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55074" g_stop="55651" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E351935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55074" e_stop="55651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTAGAGAAGAGGGTTAAGGAAATGATTGAGAAAGCCGCAGAGTTGGAGAAGAAATTGATGGAGAAGGAAAGGATTATTGCTGAAAGATTTGTTGCTAGCAATATTAATGGCATTCCTGTGGGTGATGATAGCGTTGGTTTTCTTGGTGGTGATGTAAACTTGCCAGTGGTTGCTGCATCATCTGTTGTCGCAGTTGCAGTGATTGGCGTTATTTGCTATCTTCGATACGGACGAAAAGCGTAAACCCTTAGCTTGATCTTCAATAAGTTTTAGTCTTTTTGGTTTTGTGCTGATCAAGCTTTGGAATTTACAGTTTTGATAGTTCTTTGGTTATGTTGGATTATTAGTTAACTTTTTGATCATAATCAGATAATAGATTACACTATTATGGTGCTGAAATATGTTTGTTTGTTAAGCTGGAGATAGTTGACATACTTGTAATAGTGCTTCTTTCTCATTTCTATGAATTTGATTACAATGGTTTTGTAGTTCTTTCCTTGGTGATGTAATTGCTTATAAGAGTTGCTGAATCTGTATGTTATAGTGTGTTTAAGTCGAATGATTGAATTGCTT</genome_strand>
        <mrna_strand>AGGAATTAGAGAAGAGGGTTAAGGAAATGATTGAGAAAGCCGCAGAGTTGGAGAAGAAATTGATGGAGAAGGAAAGGATTATTGCTGAAAGATTTGTTGCTAGCAATATTAATGGCATTCCTGTGGGTGATGATAGCGTTGGTTTTCTTGGTGGTGATGTAAACTTGCCAGTGGTTGCTGCATCATCTGTTGTCGCAGTTGCAGTGATTGGCGTTATTTGCTATCTTCGATACGGACGAAAAGCGTAAACCCTTAGCTTGATCTTCAATAAGTTTTAGTCTTTTTGGTTTTGTGCTGATCAAGCTTTGGAATTTACAGTTTTGATAGTTCTTTGGTTATGTTGGATTATTAGTTAACTTTTTGATCATAATCAGATAATAGATTACACTATTATGGTGCTGAAATATGTTTGTTTGTTAAGCTGGAGATAGTTGACATACTTGTAATAGTGCTTCTTTCTCATTTCTATGAATTTGATTACAATGGTTTTGTAGTTCTTTCCTTGGTGATGTAATTGCTTATAAGAGTTGCTGAATCTGTATGTTATAGTGTGTTTAAGTCGAATGATTGAATTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714840" ref_strand="+" ref_description="SGN-E714840 [FB12CD02]">
      <seq>gaaattgatggagaaggaaaggattattgctgaaagatttgttgctagcaatattaatggcattcctgtgggtgatgatagcgttggttttcttggtggtgatgtaaacttgccagtggttgctgcatcatctgttgtcgcagttgcagtgattggcgttatttgctatcttcgatacggacgaaaagcgtaaacccttagcttgatcttcaataagttttagtctttttggttttgtgctgatcaagctttggaatttacagttttgatagttctttggttatgttggattattagttaactttttgatcataatcagataatagattacactattatggtgctgaaatatgtttgtttgttaagctggagatagttgacatacttgtaatagtgcttctttctcatttctatgaatttgattacaatggttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="54829" stop="55866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55129" g_stop="55566" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="464"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E714840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55129" e_stop="55566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGATGGAGAAGGAAAGGATTATTGCTGAAAGATTTGTTGCTAGCAATATTAATGGCATTCCTGTGGGTGATGATAGCGTTGGTTTTCTTGGTGGTGATGTAAACTTGCCAGTGGTTGCTGCATCATCTGTTGTCGCAGTTGCAGTGATTGGCGTTATTTGCTATCTTCGATACGGACGAAAAGCGTAAACCCTTAGCTTGATCTTCAATAAGTTTTAGTCTTTTTGGTTTTGTGCTGATCAAGCTTTGGAATTTACAGTTTTGATAGTTCTTTGGTTATGTTGGATTATTAGTTAACTTTTTGATCATAATCAGATAATAGATTACACTATTATGGTGCTGAAATATGTTTGTTTGTTAAGCTGGAGATAGTTGACATACTTGTAATAGTGCTTCTTTCTCATTTCTATGAATTTGATTACAATGGTTTTGTA</genome_strand>
        <mrna_strand>GAAATTGATGGAGAAGGAAAGGATTATTGCTGAAAGATTTGTTGCTAGCAATATTAATGGCATTCCTGTGGGTGATGATAGCGTTGGTTTTCTTGGTGGTGATGTAAACTTGCCAGTGGTTGCTGCATCATCTGTTGTCGCAGTTGCAGTGATTGGCGTTATTTGCTATCTTCGATACGGACGAAAAGCGTAAACCCTTAGCTTGATCTTCAATAAGTTTTAGTCTTTTTGGTTTTGTGCTGATCAAGCTTTGGAATTTACAGTTTTGATAGTTCTTTGGTTATGTTGGATTATTAGTTAACTTTTTGATCATAATCAGATAATAGATTACACTATTATGGTGCTGAAATATGTTTGTTTGTTAAGCTGGAGATAGTTGACATACTTGTAATAGTGCTTCTTTCTCATTTCTATGAATTTGATTACAATGGTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351348" ref_strand="+" ref_description="SGN-E351348 [cTOS-12-M15]">
      <seq>agctttcttcttcttttctctgtgaaaatgcaaaattctcactcgttgtgaatctgtggattagggtttgtatcatcagggccatggcaatgctgctgccttttctcccaaggccaagtaggatttaatcttgctccagaagttttgaggtattcaactgcaaaaccaagttgaatttactggtccttttgcttttctgaagcatgtaaccctgaacccctaagtacattgtacttagttagggaatgaagccatcggtccgtatagcatataaatctttgtaattataaagaagaaaatttcttttgcatattccagtttttctttctctgaattttgtcctatttattcaaattctgttgcttaatcagtgcaaaagcattgttgtacatttaaacaatataatatccttttagacctttcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="57343" stop="58889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57643" g_stop="57754" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57755" i_stop="58266" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58267" g_stop="58591" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="437" r_length="325" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E351348" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57643" e_stop="57754"/>
          <exon e_start="58267" e_stop="58591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCTTCTTCTTTTCTCTGTGAAAATGCAAAATTCTCACTCGTTGTGAATCTGTGGATTAGGGTTTGTATCATCAGGGCCATGGCAATGCTGCTGCCTTTTCTCCCAAGGTATTCTTTTCTTCATTTTTGGTTAATAAAATCATTAATTGAGTTCTTTTTGATGTTTTACAATTTGGGTCTTTTTGTTTTGCTCTTAAGTTTCTGAAAAATGTTACTTTTTTCTTTATCTCCCAATTCATTCTTGACAATCCATACAGAAAGATTGTTTTTTTAACCTCTAGTGTGAAGAATTTACAGAGTTAAAAATAGTAATTCTGATTGTGTAATGATTAAAAGTAAAAATGCTCCCTGTGTTGATCGTCTTTCTAATTTCGTAATTTTCTTTACAAAATGGAGAATTCGAAGAGCCAAAACGATAGGTTATGTGTTATCCATGTGTGCACAACTACGATACATGCGCTTAGCTCAACCCGGTGAGGTGCTTATACTCTCTGTGTACTTTGAACCAATCTAGAGGTGTTACAATGGGCCGGCTTTATGTCTGCTTGATGTAATTTGTAAATGAAGTGTTCCTTCTCAACTGTCGATGTCATTTCTTATTTGTTTTTCTACTTCTGCAGGCCAAGTAGGATTTAATCTTGCTCCAGAAGTTTTGAGGTATTCAACTGCAAAACCAAGTTGAATTTACTGGTCCTTTTGCTTTTCTGAAGCATGTAACCCTGAACCCCTAAGTACATTGTACTTAGTTAGGGAATGAAGCCATCGGTCCGTATAGCATATAAATCTTTGTAATTATAAAGAAGAAAATTTCTTTTGCATATTCCAGTTTTTCTTTCTCTGAATTTTGTCCTATTTATTCAAATTCTGTTGCTTAATCAGTGCAAAAGCATTGTTGTACATTTAAACAATATAATATCCTTTTAGACCTTTCATCAAAGGAAGAGC</genome_strand>
        <mrna_strand>AGCTTTCTTCTTCTTTTCTCTGTGAAAATGCAAAATTCTCACTCGTTGTGAATCTGTGGATTAGGGTTTGTATCATCAGGGCCATGGCAATGCTGCTGCCTTTTCTCCCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGTAGGATTTAATCTTGCTCCAGAAGTTTTGAGGTATTCAACTGCAAAACCAAGTTGAATTTACTGGTCCTTTTGCTTTTCTGAAGCATGTAACCCTGAACCCCTAAGTACATTGTACTTAGTTAGGGAATGAAGCCATCGGTCCGTATAGCATATAAATCTTTGTAATTATAAAGAAGAAAATTTCTTTTGCATATTCCAGTTTTTCTTTCTCTGAATTTTGTCCTATTTATTCAAATTCTGTTGCTTAATCAGTGCAAAAGCATTGTTGTACATTTAAACAATATAATATCCTTTTAGACCTTTCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355362" ref_strand="+" ref_description="SGN-E355362 [cTOS-25-A11]">
      <seq>agctttcttcttcttttctctgtgaaaatgcaaaattctcactcgttgtgaatctgtggattagggtttgtatcatcagggccatggcaatgctgctgccttttctcccaaggccaagtaggatttaatcttgctccagaagttttgaggtattcaactgcaaaaccaagttgaatttactggtccttttgcttttctgaagcatgtaaccctgaacccctaagtacattgtacttagttagggaatgaagccatcggtccgtatagcatataaatctttgtaattataaagaagaaaatttcttttgcatattccagtttttctttctctgaattttgtcctatttattcaaattctgttgcttaatcagtgcaaaagcattgttgtacatttaaacaatataatatccttttagacctttcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="57343" stop="58889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57643" g_stop="57754" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57755" i_stop="58266" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58267" g_stop="58591" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="437" r_length="325" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E355362" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57643" e_stop="57754"/>
          <exon e_start="58267" e_stop="58591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCTTCTTCTTTTCTCTGTGAAAATGCAAAATTCTCACTCGTTGTGAATCTGTGGATTAGGGTTTGTATCATCAGGGCCATGGCAATGCTGCTGCCTTTTCTCCCAAGGTATTCTTTTCTTCATTTTTGGTTAATAAAATCATTAATTGAGTTCTTTTTGATGTTTTACAATTTGGGTCTTTTTGTTTTGCTCTTAAGTTTCTGAAAAATGTTACTTTTTTCTTTATCTCCCAATTCATTCTTGACAATCCATACAGAAAGATTGTTTTTTTAACCTCTAGTGTGAAGAATTTACAGAGTTAAAAATAGTAATTCTGATTGTGTAATGATTAAAAGTAAAAATGCTCCCTGTGTTGATCGTCTTTCTAATTTCGTAATTTTCTTTACAAAATGGAGAATTCGAAGAGCCAAAACGATAGGTTATGTGTTATCCATGTGTGCACAACTACGATACATGCGCTTAGCTCAACCCGGTGAGGTGCTTATACTCTCTGTGTACTTTGAACCAATCTAGAGGTGTTACAATGGGCCGGCTTTATGTCTGCTTGATGTAATTTGTAAATGAAGTGTTCCTTCTCAACTGTCGATGTCATTTCTTATTTGTTTTTCTACTTCTGCAGGCCAAGTAGGATTTAATCTTGCTCCAGAAGTTTTGAGGTATTCAACTGCAAAACCAAGTTGAATTTACTGGTCCTTTTGCTTTTCTGAAGCATGTAACCCTGAACCCCTAAGTACATTGTACTTAGTTAGGGAATGAAGCCATCGGTCCGTATAGCATATAAATCTTTGTAATTATAAAGAAGAAAATTTCTTTTGCATATTCCAGTTTTTCTTTCTCTGAATTTTGTCCTATTTATTCAAATTCTGTTGCTTAATCAGTGCAAAAGCATTGTTGTACATTTAAACAATATAATATCCTTTTAGACCTTTCATCAAAGGAAGAGC</genome_strand>
        <mrna_strand>AGCTTTCTTCTTCTTTTCTCTGTGAAAATGCAAAATTCTCACTCGTTGTGAATCTGTGGATTAGGGTTTGTATCATCAGGGCCATGGCAATGCTGCTGCCTTTTCTCCCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGTAGGATTTAATCTTGCTCCAGAAGTTTTGAGGTATTCAACTGCAAAACCAAGTTGAATTTACTGGTCCTTTTGCTTTTCTGAAGCATGTAACCCTGAACCCCTAAGTACATTGTACTTAGTTAGGGAATGAAGCCATCGGTCCGTATAGCATATAAATCTTTGTAATTATAAAGAAGAAAATTTCTTTTGCATATTCCAGTTTTTCTTTCTCTGAATTTTGTCCTATTTATTCAAATTCTGTTGCTTAATCAGTGCAAAAGCATTGTTGTACATTTAAACAATATAATATCCTTTTAGACCTTTCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355400" ref_strand="+" ref_description="SGN-E355400 [cTOS-25-O19]">
      <seq>agctttcttcttcttttctctgtgaaaatgcaaaattctcactcgttgtgaatctgtggattagggtttgtatcatcagggccatggcaatgctgctgccttttctcccaaggccaagtaggatttaatcttgctccagaagttttgaggtattcaactgcaaaaccaagttgaatttactggtccttttgcttttctgaagcatgtaaccctgaacccctaagtacattgtacttagttagggaatgaagccatcggtccgtatagcatataaatctttgtaattataaagaagaaaatttcttttgcatattccagtttttctttctctgaattttgtcctatttattcaaattctgttgcttaatcagtgcaaaagcattgttgtacatttaaacaatataatatccttttagacctttcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="57343" stop="58889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57643" g_stop="57754" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57755" i_stop="58266" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58267" g_stop="58591" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="437" r_length="325" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E355400" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57643" e_stop="57754"/>
          <exon e_start="58267" e_stop="58591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCTTCTTCTTTTCTCTGTGAAAATGCAAAATTCTCACTCGTTGTGAATCTGTGGATTAGGGTTTGTATCATCAGGGCCATGGCAATGCTGCTGCCTTTTCTCCCAAGGTATTCTTTTCTTCATTTTTGGTTAATAAAATCATTAATTGAGTTCTTTTTGATGTTTTACAATTTGGGTCTTTTTGTTTTGCTCTTAAGTTTCTGAAAAATGTTACTTTTTTCTTTATCTCCCAATTCATTCTTGACAATCCATACAGAAAGATTGTTTTTTTAACCTCTAGTGTGAAGAATTTACAGAGTTAAAAATAGTAATTCTGATTGTGTAATGATTAAAAGTAAAAATGCTCCCTGTGTTGATCGTCTTTCTAATTTCGTAATTTTCTTTACAAAATGGAGAATTCGAAGAGCCAAAACGATAGGTTATGTGTTATCCATGTGTGCACAACTACGATACATGCGCTTAGCTCAACCCGGTGAGGTGCTTATACTCTCTGTGTACTTTGAACCAATCTAGAGGTGTTACAATGGGCCGGCTTTATGTCTGCTTGATGTAATTTGTAAATGAAGTGTTCCTTCTCAACTGTCGATGTCATTTCTTATTTGTTTTTCTACTTCTGCAGGCCAAGTAGGATTTAATCTTGCTCCAGAAGTTTTGAGGTATTCAACTGCAAAACCAAGTTGAATTTACTGGTCCTTTTGCTTTTCTGAAGCATGTAACCCTGAACCCCTAAGTACATTGTACTTAGTTAGGGAATGAAGCCATCGGTCCGTATAGCATATAAATCTTTGTAATTATAAAGAAGAAAATTTCTTTTGCATATTCCAGTTTTTCTTTCTCTGAATTTTGTCCTATTTATTCAAATTCTGTTGCTTAATCAGTGCAAAAGCATTGTTGTACATTTAAACAATATAATATCCTTTTAGACCTTTCATCAAAGGAAGAGC</genome_strand>
        <mrna_strand>AGCTTTCTTCTTCTTTTCTCTGTGAAAATGCAAAATTCTCACTCGTTGTGAATCTGTGGATTAGGGTTTGTATCATCAGGGCCATGGCAATGCTGCTGCCTTTTCTCCCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGTAGGATTTAATCTTGCTCCAGAAGTTTTGAGGTATTCAACTGCAAAACCAAGTTGAATTTACTGGTCCTTTTGCTTTTCTGAAGCATGTAACCCTGAACCCCTAAGTACATTGTACTTAGTTAGGGAATGAAGCCATCGGTCCGTATAGCATATAAATCTTTGTAATTATAAAGAAGAAAATTTCTTTTGCATATTCCAGTTTTTCTTTCTCTGAATTTTGTCCTATTTATTCAAATTCTGTTGCTTAATCAGTGCAAAAGCATTGTTGTACATTTAAACAATATAATATCCTTTTAGACCTTTCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355535" ref_strand="+" ref_description="SGN-E355535 [cTOS-25-O18]">
      <seq>agctttcttcttcttttctctgtgaaaatgcaaaattctcactcgttgtgaatctgtggattagggtttgtatcatcagggccatggcaatgctgctgccttttctcccaaggccaagtaggatttaatcttgctccagaagttttgaggtattcaactgcaaaaccaagttgaatttactggtccttttgcttttctgaagcatgtaaccctgaacccctaagtacattgtacttagttagggaatgaagccatcggtccgtatagcatataaatctttgtaattataaagaagaaaatttcttttgcatattccagtttttctttctctgaattttgtcctatttattcaaattctgttgcttaatcagtgcaaaagcattgttgtacatttaaacaatataatatccttttagacctttcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="57343" stop="58889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57643" g_stop="57754" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57755" i_stop="58266" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58267" g_stop="58591" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="437" r_length="325" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E355535" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57643" e_stop="57754"/>
          <exon e_start="58267" e_stop="58591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCTTCTTCTTTTCTCTGTGAAAATGCAAAATTCTCACTCGTTGTGAATCTGTGGATTAGGGTTTGTATCATCAGGGCCATGGCAATGCTGCTGCCTTTTCTCCCAAGGTATTCTTTTCTTCATTTTTGGTTAATAAAATCATTAATTGAGTTCTTTTTGATGTTTTACAATTTGGGTCTTTTTGTTTTGCTCTTAAGTTTCTGAAAAATGTTACTTTTTTCTTTATCTCCCAATTCATTCTTGACAATCCATACAGAAAGATTGTTTTTTTAACCTCTAGTGTGAAGAATTTACAGAGTTAAAAATAGTAATTCTGATTGTGTAATGATTAAAAGTAAAAATGCTCCCTGTGTTGATCGTCTTTCTAATTTCGTAATTTTCTTTACAAAATGGAGAATTCGAAGAGCCAAAACGATAGGTTATGTGTTATCCATGTGTGCACAACTACGATACATGCGCTTAGCTCAACCCGGTGAGGTGCTTATACTCTCTGTGTACTTTGAACCAATCTAGAGGTGTTACAATGGGCCGGCTTTATGTCTGCTTGATGTAATTTGTAAATGAAGTGTTCCTTCTCAACTGTCGATGTCATTTCTTATTTGTTTTTCTACTTCTGCAGGCCAAGTAGGATTTAATCTTGCTCCAGAAGTTTTGAGGTATTCAACTGCAAAACCAAGTTGAATTTACTGGTCCTTTTGCTTTTCTGAAGCATGTAACCCTGAACCCCTAAGTACATTGTACTTAGTTAGGGAATGAAGCCATCGGTCCGTATAGCATATAAATCTTTGTAATTATAAAGAAGAAAATTTCTTTTGCATATTCCAGTTTTTCTTTCTCTGAATTTTGTCCTATTTATTCAAATTCTGTTGCTTAATCAGTGCAAAAGCATTGTTGTACATTTAAACAATATAATATCCTTTTAGACCTTTCATCAAAGGAAGAGC</genome_strand>
        <mrna_strand>AGCTTTCTTCTTCTTTTCTCTGTGAAAATGCAAAATTCTCACTCGTTGTGAATCTGTGGATTAGGGTTTGTATCATCAGGGCCATGGCAATGCTGCTGCCTTTTCTCCCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGTAGGATTTAATCTTGCTCCAGAAGTTTTGAGGTATTCAACTGCAAAACCAAGTTGAATTTACTGGTCCTTTTGCTTTTCTGAAGCATGTAACCCTGAACCCCTAAGTACATTGTACTTAGTTAGGGAATGAAGCCATCGGTCCGTATAGCATATAAATCTTTGTAATTATAAAGAAGAAAATTTCTTTTGCATATTCCAGTTTTTCTTTCTCTGAATTTTGTCCTATTTATTCAAATTCTGTTGCTTAATCAGTGCAAAAGCATTGTTGTACATTTAAACAATATAATATCCTTTTAGACCTTTCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321045" ref_strand="+" ref_description="SGN-E321045 [cTOB-13-J16]">
      <seq>ttagcactcgtatttccattcgattacatcttagtagtaagtagataaagccaaatctaataagaatggcaatgttcatgcctaattttaacctacaacatgatcccatttccacgacacaaaacacaactcaatattgtcaccttcgatcaacaatcgaaaaacgaaattccccgtttttagttagttggtctttccctcctccggggtacgtgaaaatcaacacagatggcagttttatgcctaaatcaggagaagcgggatacggagtcattgcgcgtgatgacaaaggaatgtggctaggtggattctatggtcgacttgatacgaagtcaacgtcgagtctgaccccagagttgtgggctattcacgaggccctaagacaagtcaaacattgcaacttgaaaaaagtgattattgaaaccgactcgaatgaggccttgatgttgataagtcgtgccaaaaaagtagatgcaaatcaccctgatcataaggtgatagaagattgtaggattctattgtctgaggtcgagacatgtctaattcatacgttgagacaaggtaataactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="60986" stop="59816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60686" g_stop="60116" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E321045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60686" e_stop="60116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCACTCGTATTTCCATTCGATTACATCTTAGTAGTAAGTAGATAAAGCCAAATCTAATAAGAATGGCAATGTTCATGCCTAATTTTAACCTACAACATGATCCCATTTCCACGACACAAAACACAACTCAATATTGTCACCTTCGATCAACAATCGAAAAACGAAATTCCCCGTTTTTAGTTAGTTGGTCTTTCCCTCCTCCGGGGTACGTGAAAATCAACACAGATGGCAGTTTTATGCCTAAATCAGGAGAAGCGGGATACGGAGTCATTGCGCGTGATGACAAAGGAATGTGGCTAGGTGGATTCTATGGTCGACTTGATACGAAGTCAACGTCGAGTCTGACCCCAGAGTTGTGGGCTATTCACGAGGCCCTAAGACAAGTCAAACATTGCAACTTGAAAAAAGTGATTATTGAAACCGACTCGAATGAGGCCTTGATGTTGATAAGTCGTGCCAAAAAAGTAGATGCAAATCACCCTGATCATAAGGTGATAGAAGATTGTAGGATTCTATTGTCTGAGGTCGAGACATGTCTAATTCATACGTTGAGACAAGGTAATAACTG</genome_strand>
        <mrna_strand>TTAGCACTCGTATTTCCATTCGATTACATCTTAGTAGTAAGTAGATAAAGCCAAATCTAATAAGAATGGCAATGTTCATGCCTAATTTTAACCTACAACATGATCCCATTTCCACGACACAAAACACAACTCAATATTGTCACCTTCGATCAACAATCGAAAAACGAAATTCCCCGTTTTTAGTTAGTTGGTCTTTCCCTCCTCCGGGGTACGTGAAAATCAACACAGATGGCAGTTTTATGCCTAAATCAGGAGAAGCGGGATACGGAGTCATTGCGCGTGATGACAAAGGAATGTGGCTAGGTGGATTCTATGGTCGACTTGATACGAAGTCAACGTCGAGTCTGACCCCAGAGTTGTGGGCTATTCACGAGGCCCTAAGACAAGTCAAACATTGCAACTTGAAAAAAGTGATTATTGAAACCGACTCGAATGAGGCCTTGATGTTGATAAGTCGTGCCAAAAAAGTAGATGCAAATCACCCTGATCATAAGGTGATAGAAGATTGTAGGATTCTATTGTCTGAGGTCGAGACATGTCTAATTCATACGTTGAGACAAGGTAATAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286934" ref_strand="+" ref_description="SGN-E286934 [cLES-6-G21]">
      <seq>agaaatgtcgactgtggggaaagctccaggttcttggtcttggaactgcattaaagattctcttctcagttgatggtgaatatcgtcaagatcaacatctgcagttgcaaagaaatgaagtgattgctcttgtaaacctacttaatcggctatcagaatctatcaagctagtacaggaaatgagccctacatatgagaagacaatgaaggggctaagtctacagccagctgctaagtttataagttcgtggaatagactattgaaaactgtgctaggagataggttgaggaagcttacatgatattgatataattttggtgtacaatgatgtaaagaatgaatacaactaaactattgaaaggtgagaagatttctacagccggatagcatacagggatacacggatttatcgcgggaacagtgttcgaaatttggaaatacagaatccattactaggtgaactggaaaattagtagtgttctgtcacttgatcatgtgtaactttgaaatgttgtaacattattgttgaaactatatctctgtgtttcctcaatgagaagtgacaattttgctcctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="64462" stop="62106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64162" g_stop="64065" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64064" i_stop="63952" i_length="113">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63951" g_stop="63767" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="283" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63766" i_stop="62713" i_length="1054">
            <donor d_prob="0.740" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62712" g_stop="62405" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="591" r_length="308" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E286934" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64162" e_stop="64065"/>
          <exon e_start="63951" e_stop="63767"/>
          <exon e_start="62712" e_stop="62405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTCGACTGTGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCAGTTGATGGTGAATATCGTCAAGATCAACATGTGAGTTTTCTTTATTCTTTTTTCATTTGCTGACCTCTCTCTCTGGAACAACTACATGTTATTCACAGCCAACTATGTTTCTTAGTCTCTCTCTCTTCTTATATATTTTACAGCTGCAGTTGCAAAGAAATGAAGTGATTGCTCTTGTAAACCTACTTAATCGGCTATCAGAATCTATCAAGCTAGTACAGGAAATGAGCCCTACATATGAGAAGACAATGAAGGGGCTAAGTCTACAGCCAGCTGCTAAGTTTATAAGTTCGTGGAATAGACTATTGAAAACTGTACTAGGAGATAGGTAAACACCACTCTCTTTTGTTTGTGATTAATGATTCAAATCCAAGGGTAAAGTGCATTACCAAACTTTGCCATTCTTACTTCTTAAAGCTTGAAACAAGATAAATTTAGATTTAACCTCTTTGACAAGTATCTGGTTATTATGTCAATATTTCTGTTGGCTGAAAATTGGAAAGAATGGTTTTTTAAAGTCTAGACCAAATTTCAATTTGTCAAATTATAAAAAGAGGAAGGAGGAATCAAAAACCTCCCCTCCGGTGCATCCATGATTCAACATCCACTCGTGTTTCTTTACCACTTTTAAAATATTTTTCGGGGCCAAGTAGTTTGATGCTATTGCTAATTATATGTGTTCTTGACAAAAACTTCTGCAATGACTCAAGCCCCTGAAAACTGAGAACTGATTGGAAGTTTCACATGTCACTCTTTGGAACTTCTCTAATATATTGCTGTCATTTCCAGGATCCTGAAAAGGAAGAATAAGACTGAGCTGATCTATTTGTAGTTCCATTTTCTTTTTTGATTTTTGTCTTTCGGAAACAGACTCTATCTCCACGAGGTAAGAGGAAGGTCTGTGTACATTCTACCCTCCCCAGACTCCACTTGTGGGGTCAAACAGGGTATGTTCTTGTGTTTTAGTTTATCGGGAACCATGCACACCGTTGTGTCGCGTCAAACACATTATACACTTTTTATTTACAAACATCTCATCGAGAATGCTAAAAAATCCATGTTCATTGATAATGTCTCTCCTACCACTTCCTCCCCATGCAATCACTTGTTTATGAAGATAAGTAGTTCATGACACAGAATTTTGATCTTTCCCTAGAGAACCCTTTTCCTCCCAAAAGCAAATATTGAGTTCATTATTGCTAGTGTTTTCTTTGTACTTCTTATGTGGGAATGGTTTGGAAAATAACATTTTATCGATGATGATCAAGTGGTAATGTGGGAAGAAGGGAATTAGCAACAGAATGCCATACAATTTGTTTAACTTCAAATTTTGATGATGAAGGTGAAGTGTCAGATTCTCATATTTGGTGTTCTATTTTCAGGTTGAGGAAGCTTACATGATATTGATATAATTTTGGTGTACAATGATGTAAAGAATGAATACAACTAAACTATTGAAAGGTGAGAAGATTTCTACAGCCGGATAGCATACAGGGATACACGGATTTATCGCGGGAACAGTGTTCGAAATTTGGAAATACAGAATCCATTACTAGGTGAACTGGAAAATTAGTAGTGTTCTGTCACTTGATCATGTGTAACTTTGAAATGTTGTAACATTATTGTTGAAACTATATCTCTGTGTTTCCTCAATGAGAAGTGACAATTTTGCTCCTAATATGAAGACAAT</genome_strand>
        <mrna_strand>AGAAATGTCGACTGTGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCAGTTGATGGTGAATATCGTCAAGATCAACAT.................................................................................................................CTGCAGTTGCAAAGAAATGAAGTGATTGCTCTTGTAAACCTACTTAATCGGCTATCAGAATCTATCAAGCTAGTACAGGAAATGAGCCCTACATATGAGAAGACAATGAAGGGGCTAAGTCTACAGCCAGCTGCTAAGTTTATAAGTTCGTGGAATAGACTATTGAAAACTGTGCTAGGAGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGAAGCTTACATGATATTGATATAATTTTGGTGTACAATGATGTAAAGAATGAATACAACTAAACTATTGAAAGGTGAGAAGATTTCTACAGCCGGATAGCATACAGGGATACACGGATTTATCGCGGGAACAGTGTTCGAAATTTGGAAATACAGAATCCATTACTAGGTGAACTGGAAAATTAGTAGTGTTCTGTCACTTGATCATGTGTAACTTTGAAATGTTGTAACATTATTGTTGAAACTATATCTCTGTGTTTCCTCAATGAGAAGTGACAATTTTGCTCCTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371925" ref_strand="+" ref_description="SGN-E371925 [TUS-30-M6]">
      <seq>agaaatgtcgactgtggggaaagctccaggttcttggtcttggaactgcattaaagattctcttctcagttgatggtgaatatcgtcaagatcaacatctgcagttgcaaagaaatgaagtgattgctcttgtaaacctacttaatcggctatcagaatctatcaagctagtacaggaaatgagccctacatatgagaagacaatgaaggggctaagtctacagccagctgctaagtttataagttcgtggaatagactattgaaaactgtactaggagataggttgaggaagcttacatgatattgatataattttggtgtacaatgatgtaaagaatgaatacaactaaactattgaaaggtgagaagatttctacagccggatagcatacagggatacacggatttatcgcgggaacagtgttcgaaatttggaaatacagaatccattactaggtgaactggaaaattagtagtgttctgtcacttgatcatgtgtaactttgaaatgttgtaacattattgttgaaactatatctctgtgtttcctcaatgagaagtgacaattttgctcctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="64462" stop="62106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64162" g_stop="64065" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64064" i_stop="63952" i_length="113">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63951" g_stop="63767" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="283" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63766" i_stop="62713" i_length="1054">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62712" g_stop="62405" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="591" r_length="308" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E371925" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64162" e_stop="64065"/>
          <exon e_start="63951" e_stop="63767"/>
          <exon e_start="62712" e_stop="62405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTCGACTGTGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCAGTTGATGGTGAATATCGTCAAGATCAACATGTGAGTTTTCTTTATTCTTTTTTCATTTGCTGACCTCTCTCTCTGGAACAACTACATGTTATTCACAGCCAACTATGTTTCTTAGTCTCTCTCTCTTCTTATATATTTTACAGCTGCAGTTGCAAAGAAATGAAGTGATTGCTCTTGTAAACCTACTTAATCGGCTATCAGAATCTATCAAGCTAGTACAGGAAATGAGCCCTACATATGAGAAGACAATGAAGGGGCTAAGTCTACAGCCAGCTGCTAAGTTTATAAGTTCGTGGAATAGACTATTGAAAACTGTACTAGGAGATAGGTAAACACCACTCTCTTTTGTTTGTGATTAATGATTCAAATCCAAGGGTAAAGTGCATTACCAAACTTTGCCATTCTTACTTCTTAAAGCTTGAAACAAGATAAATTTAGATTTAACCTCTTTGACAAGTATCTGGTTATTATGTCAATATTTCTGTTGGCTGAAAATTGGAAAGAATGGTTTTTTAAAGTCTAGACCAAATTTCAATTTGTCAAATTATAAAAAGAGGAAGGAGGAATCAAAAACCTCCCCTCCGGTGCATCCATGATTCAACATCCACTCGTGTTTCTTTACCACTTTTAAAATATTTTTCGGGGCCAAGTAGTTTGATGCTATTGCTAATTATATGTGTTCTTGACAAAAACTTCTGCAATGACTCAAGCCCCTGAAAACTGAGAACTGATTGGAAGTTTCACATGTCACTCTTTGGAACTTCTCTAATATATTGCTGTCATTTCCAGGATCCTGAAAAGGAAGAATAAGACTGAGCTGATCTATTTGTAGTTCCATTTTCTTTTTTGATTTTTGTCTTTCGGAAACAGACTCTATCTCCACGAGGTAAGAGGAAGGTCTGTGTACATTCTACCCTCCCCAGACTCCACTTGTGGGGTCAAACAGGGTATGTTCTTGTGTTTTAGTTTATCGGGAACCATGCACACCGTTGTGTCGCGTCAAACACATTATACACTTTTTATTTACAAACATCTCATCGAGAATGCTAAAAAATCCATGTTCATTGATAATGTCTCTCCTACCACTTCCTCCCCATGCAATCACTTGTTTATGAAGATAAGTAGTTCATGACACAGAATTTTGATCTTTCCCTAGAGAACCCTTTTCCTCCCAAAAGCAAATATTGAGTTCATTATTGCTAGTGTTTTCTTTGTACTTCTTATGTGGGAATGGTTTGGAAAATAACATTTTATCGATGATGATCAAGTGGTAATGTGGGAAGAAGGGAATTAGCAACAGAATGCCATACAATTTGTTTAACTTCAAATTTTGATGATGAAGGTGAAGTGTCAGATTCTCATATTTGGTGTTCTATTTTCAGGTTGAGGAAGCTTACATGATATTGATATAATTTTGGTGTACAATGATGTAAAGAATGAATACAACTAAACTATTGAAAGGTGAGAAGATTTCTACAGCCGGATAGCATACAGGGATACACGGATTTATCGCGGGAACAGTGTTCGAAATTTGGAAATACAGAATCCATTACTAGGTGAACTGGAAAATTAGTAGTGTTCTGTCACTTGATCATGTGTAACTTTGAAATGTTGTAACATTATTGTTGAAACTATATCTCTGTGTTTCCTCAATGAGAAGTGACAATTTTGCTCCTAATATGAAGACAAT</genome_strand>
        <mrna_strand>AGAAATGTCGACTGTGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCAGTTGATGGTGAATATCGTCAAGATCAACAT.................................................................................................................CTGCAGTTGCAAAGAAATGAAGTGATTGCTCTTGTAAACCTACTTAATCGGCTATCAGAATCTATCAAGCTAGTACAGGAAATGAGCCCTACATATGAGAAGACAATGAAGGGGCTAAGTCTACAGCCAGCTGCTAAGTTTATAAGTTCGTGGAATAGACTATTGAAAACTGTACTAGGAGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGAAGCTTACATGATATTGATATAATTTTGGTGTACAATGATGTAAAGAATGAATACAACTAAACTATTGAAAGGTGAGAAGATTTCTACAGCCGGATAGCATACAGGGATACACGGATTTATCGCGGGAACAGTGTTCGAAATTTGGAAATACAGAATCCATTACTAGGTGAACTGGAAAATTAGTAGTGTTCTGTCACTTGATCATGTGTAACTTTGAAATGTTGTAACATTATTGTTGAAACTATATCTCTGTGTTTCCTCAATGAGAAGTGACAATTTTGCTCCTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371924" ref_strand="+" ref_description="SGN-E371924 [TUS-30-M6](-)">
      <seq>gagaaatgtcgactgtggggaaagctccaggttcttggtcttggaactgcattaaagattctcttctcagttgatggtgaatatcgtcaagatcaacatctgcagttgcaaagaaatgaagtgattgctcttgtaaacctacttaatcggctatcagaatctatcaagctagtacaggaaatgagccctacatatgagaagacaatgaaggggctaagtctacagccagctgctaagtttataagttcgtggaatagactattgaaaactgtactaggagataggttgaggaagcttacatgatattgatataattttggtgtacaatgatgtaaagaatgaatacaactaaactattgaaaggtgagaagatttctacagccggatagcatacagggatacacggatttatcgcgggaacagtgttcgaaatttggaaatacagaatccattactaggtgaactggaaaattagtagtgttctgtcacttgatcatgtgtaactttgaaatgttgtaacattattgttgaaactatatctctgtgtttcctcaatgagaagtgacaattttgctcctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="64463" stop="62106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64163" g_stop="64065" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64064" i_stop="63952" i_length="113">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63951" g_stop="63767" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="284" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63766" i_stop="62713" i_length="1054">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62712" g_stop="62406" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="591" r_length="307" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E371924" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64163" e_stop="64065"/>
          <exon e_start="63951" e_stop="63767"/>
          <exon e_start="62712" e_stop="62406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATGTCGACTGTGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCAGTTGATGGTGAATATCGTCAAGATCAACATGTGAGTTTTCTTTATTCTTTTTTCATTTGCTGACCTCTCTCTCTGGAACAACTACATGTTATTCACAGCCAACTATGTTTCTTAGTCTCTCTCTCTTCTTATATATTTTACAGCTGCAGTTGCAAAGAAATGAAGTGATTGCTCTTGTAAACCTACTTAATCGGCTATCAGAATCTATCAAGCTAGTACAGGAAATGAGCCCTACATATGAGAAGACAATGAAGGGGCTAAGTCTACAGCCAGCTGCTAAGTTTATAAGTTCGTGGAATAGACTATTGAAAACTGTACTAGGAGATAGGTAAACACCACTCTCTTTTGTTTGTGATTAATGATTCAAATCCAAGGGTAAAGTGCATTACCAAACTTTGCCATTCTTACTTCTTAAAGCTTGAAACAAGATAAATTTAGATTTAACCTCTTTGACAAGTATCTGGTTATTATGTCAATATTTCTGTTGGCTGAAAATTGGAAAGAATGGTTTTTTAAAGTCTAGACCAAATTTCAATTTGTCAAATTATAAAAAGAGGAAGGAGGAATCAAAAACCTCCCCTCCGGTGCATCCATGATTCAACATCCACTCGTGTTTCTTTACCACTTTTAAAATATTTTTCGGGGCCAAGTAGTTTGATGCTATTGCTAATTATATGTGTTCTTGACAAAAACTTCTGCAATGACTCAAGCCCCTGAAAACTGAGAACTGATTGGAAGTTTCACATGTCACTCTTTGGAACTTCTCTAATATATTGCTGTCATTTCCAGGATCCTGAAAAGGAAGAATAAGACTGAGCTGATCTATTTGTAGTTCCATTTTCTTTTTTGATTTTTGTCTTTCGGAAACAGACTCTATCTCCACGAGGTAAGAGGAAGGTCTGTGTACATTCTACCCTCCCCAGACTCCACTTGTGGGGTCAAACAGGGTATGTTCTTGTGTTTTAGTTTATCGGGAACCATGCACACCGTTGTGTCGCGTCAAACACATTATACACTTTTTATTTACAAACATCTCATCGAGAATGCTAAAAAATCCATGTTCATTGATAATGTCTCTCCTACCACTTCCTCCCCATGCAATCACTTGTTTATGAAGATAAGTAGTTCATGACACAGAATTTTGATCTTTCCCTAGAGAACCCTTTTCCTCCCAAAAGCAAATATTGAGTTCATTATTGCTAGTGTTTTCTTTGTACTTCTTATGTGGGAATGGTTTGGAAAATAACATTTTATCGATGATGATCAAGTGGTAATGTGGGAAGAAGGGAATTAGCAACAGAATGCCATACAATTTGTTTAACTTCAAATTTTGATGATGAAGGTGAAGTGTCAGATTCTCATATTTGGTGTTCTATTTTCAGGTTGAGGAAGCTTACATGATATTGATATAATTTTGGTGTACAATGATGTAAAGAATGAATACAACTAAACTATTGAAAGGTGAGAAGATTTCTACAGCCGGATAGCATACAGGGATACACGGATTTATCGCGGGAACAGTGTTCGAAATTTGGAAATACAGAATCCATTACTAGGTGAACTGGAAAATTAGTAGTGTTCTGTCACTTGATCATGTGTAACTTTGAAATGTTGTAACATTATTGTTGAAACTATATCTCTGTGTTTCCTCAATGAGAAGTGACAATTTTGCTCCTAATATGAAGACAA</genome_strand>
        <mrna_strand>GAGAAATGTCGACTGTGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCAGTTGATGGTGAATATCGTCAAGATCAACAT.................................................................................................................CTGCAGTTGCAAAGAAATGAAGTGATTGCTCTTGTAAACCTACTTAATCGGCTATCAGAATCTATCAAGCTAGTACAGGAAATGAGCCCTACATATGAGAAGACAATGAAGGGGCTAAGTCTACAGCCAGCTGCTAAGTTTATAAGTTCGTGGAATAGACTATTGAAAACTGTACTAGGAGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGAAGCTTACATGATATTGATATAATTTTGGTGTACAATGATGTAAAGAATGAATACAACTAAACTATTGAAAGGTGAGAAGATTTCTACAGCCGGATAGCATACAGGGATACACGGATTTATCGCGGGAACAGTGTTCGAAATTTGGAAATACAGAATCCATTACTAGGTGAACTGGAAAATTAGTAGTGTTCTGTCACTTGATCATGTGTAACTTTGAAATGTTGTAACATTATTGTTGAAACTATATCTCTGTGTTTCCTCAATGAGAAGTGACAATTTTGCTCCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352751" ref_strand="+" ref_description="SGN-E352751 [cTOS-11-F8]">
      <seq>tgacgaagctaaactgtggaaaggccaaagtggacctgagctaaagcagcagattcaaaagcaattcaggaatattagtgctctcatggattgtgtaggatgtgagaaatgtcgactgtggggaaagctccaggttcttggtcttggaactgcattaaagattctcttctcagttgatggtgaatatcgtcaagatcaacatctgcagttgcaaagaaatgaagtgattgctcttgtaaacctacttaatcggctatcagaatctatcaagctagtacaggaaatgagccctacatatgagaagacaatgaaggggctaagtctacagccagctgctaagtttataagttcgtggaatagactattgaaaactgtactaggagataggttgaggaagcttacatgatattgatataattttggtgtacaatgatgtaaagaatgaatacaactaaactattgaaaggtgagaagatttctacagccggatagcatacagggatacacggatttatcgcgggaacagtgttcgaaatttggaaatacagaatccattactangtgaactggaaaattagtagtgttctgtcacttgatcatgtgtaactttgaaatggtgtaacattattggtgaaactatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="64973" stop="62156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64673" g_stop="64596" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64595" i_stop="64189" i_length="407">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64188" g_stop="64065" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="202" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64064" i_stop="63952" i_length="113">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63951" g_stop="63767" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="387" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63766" i_stop="62713" i_length="1054">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62712" g_stop="62456" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="644" r_length="257" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E352751" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64673" e_stop="64596"/>
          <exon e_start="64188" e_stop="64065"/>
          <exon e_start="63951" e_stop="63767"/>
          <exon e_start="62712" e_stop="62456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAAGCTAAACTGTGGAAAGGCCAAAGTGGACCTGAGCTAAAGCAGCAGATTCAAAAGCAATTCAGGAATATTAGGTTTCAATTGAACTGTTCTCAATTTAATTTCGTAAATTCAGAAAAGAAAGGCCTAAAGGATGTTATGTTGCTTATACATGCTGGCACCCCCTTTGGACTCTATTTTGAGTTGACTGCATCAGTACATTTATATTTCAGTCTATGTATTCAAATGTATGCAAATCCCATTTTCTTTAAGCATATAGAAACCTATGATTCCAATTTGCATATGCTGCTGCTTTGGTGAGTTTAGTGATCATGGCTGGCTCACCTGGAAAGAATTGGGAAGATGTTCTTTTAGTGAGATGTTGTATTGTTGTTAACACCACAGAAAGAGCTGAAAATCTTGTGTATGCTGTTCAAAGTAGTTGTTGCTATGTACTTGAGCATATGACTGAACAATTTGTTATTCACTTTTCATGTTGCAGTGCTCTCATGGATTGTGTAGGATGTGAGAAATGTCGACTGTGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCAGTTGATGGTGAATATCGTCAAGATCAACATGTGAGTTTTCTTTATTCTTTTTTCATTTGCTGACCTCTCTCTCTGGAACAACTACATGTTATTCACAGCCAACTATGTTTCTTAGTCTCTCTCTCTTCTTATATATTTTACAGCTGCAGTTGCAAAGAAATGAAGTGATTGCTCTTGTAAACCTACTTAATCGGCTATCAGAATCTATCAAGCTAGTACAGGAAATGAGCCCTACATATGAGAAGACAATGAAGGGGCTAAGTCTACAGCCAGCTGCTAAGTTTATAAGTTCGTGGAATAGACTATTGAAAACTGTACTAGGAGATAGGTAAACACCACTCTCTTTTGTTTGTGATTAATGATTCAAATCCAAGGGTAAAGTGCATTACCAAACTTTGCCATTCTTACTTCTTAAAGCTTGAAACAAGATAAATTTAGATTTAACCTCTTTGACAAGTATCTGGTTATTATGTCAATATTTCTGTTGGCTGAAAATTGGAAAGAATGGTTTTTTAAAGTCTAGACCAAATTTCAATTTGTCAAATTATAAAAAGAGGAAGGAGGAATCAAAAACCTCCCCTCCGGTGCATCCATGATTCAACATCCACTCGTGTTTCTTTACCACTTTTAAAATATTTTTCGGGGCCAAGTAGTTTGATGCTATTGCTAATTATATGTGTTCTTGACAAAAACTTCTGCAATGACTCAAGCCCCTGAAAACTGAGAACTGATTGGAAGTTTCACATGTCACTCTTTGGAACTTCTCTAATATATTGCTGTCATTTCCAGGATCCTGAAAAGGAAGAATAAGACTGAGCTGATCTATTTGTAGTTCCATTTTCTTTTTTGATTTTTGTCTTTCGGAAACAGACTCTATCTCCACGAGGTAAGAGGAAGGTCTGTGTACATTCTACCCTCCCCAGACTCCACTTGTGGGGTCAAACAGGGTATGTTCTTGTGTTTTAGTTTATCGGGAACCATGCACACCGTTGTGTCGCGTCAAACACATTATACACTTTTTATTTACAAACATCTCATCGAGAATGCTAAAAAATCCATGTTCATTGATAATGTCTCTCCTACCACTTCCTCCCCATGCAATCACTTGTTTATGAAGATAAGTAGTTCATGACACAGAATTTTGATCTTTCCCTAGAGAACCCTTTTCCTCCCAAAAGCAAATATTGAGTTCATTATTGCTAGTGTTTTCTTTGTACTTCTTATGTGGGAATGGTTTGGAAAATAACATTTTATCGATGATGATCAAGTGGTAATGTGGGAAGAAGGGAATTAGCAACAGAATGCCATACAATTTGTTTAACTTCAAATTTTGATGATGAAGGTGAAGTGTCAGATTCTCATATTTGGTGTTCTATTTTCAGGTTGAGGAAGCTTACATGATATTGATATAATTTTGGTGTACAATGATGTAAAGAATGAATACAACTAAACTATTGAAAGGTGAGAAGATTTCTACAGCCGGATAGCATACAGGGATACACGGATTTATCGCGGGAACAGTGTTCGAAATTTGGAAATACAGAATCCATTACTAGGTGAACTGGAAAATTAGTAGTGTTCTGTCACTTGATCATGTGTAACTTTGAAATGTTGTAACATTATTGTTGAAACTATATCT</genome_strand>
        <mrna_strand>TGACGAAGCTAAACTGTGGAAAGGCCAAAGTGGACCTGAGCTAAAGCAGCAGATTCAAAAGCAATTCAGGAATATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTCATGGATTGTGTAGGATGTGAGAAATGTCGACTGTGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCAGTTGATGGTGAATATCGTCAAGATCAACAT.................................................................................................................CTGCAGTTGCAAAGAAATGAAGTGATTGCTCTTGTAAACCTACTTAATCGGCTATCAGAATCTATCAAGCTAGTACAGGAAATGAGCCCTACATATGAGAAGACAATGAAGGGGCTAAGTCTACAGCCAGCTGCTAAGTTTATAAGTTCGTGGAATAGACTATTGAAAACTGTACTAGGAGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGAAGCTTACATGATATTGATATAATTTTGGTGTACAATGATGTAAAGAATGAATACAACTAAACTATTGAAAGGTGAGAAGATTTCTACAGCCGGATAGCATACAGGGATACACGGATTTATCGCGGGAACAGTGTTCGAAATTTGGAAATACAGAATCCATTACTANGTGAACTGGAAAATTAGTAGTGTTCTGTCACTTGATCATGTGTAACTTTGAAATGGTGTAACATTATTGGTGAAACTATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214483" ref_strand="+" ref_description="SGN-E214483 [cLEC-77-D16]">
      <seq>acactggtccctcggccaggcgaatatgggatgctatatactcggagaattgtccaaaatatgcatctggagagatttgccaggagaaaaaggttttatacaaacttatatctggtctccactcctcaatctcaatacacatagctgctgattacctgcttgatgaaactaaaaaccagtggggtacaaatccagatctgatgtatgatcgtgttctacaatatcctgaacgtgtccgaaacttgtattttactttcctctttgttctccgagctgtaacaaaagcaaaagattacttggagcaagctgagtatgatactggcaatcctgaggaagaccttaaagcacagtcccttattcgacagctactatacaaccccaaactgcaggctgcatgtccagttccgtttgacgaagctaaactgtggaaaggccaaagtggacctgagctaaagcagcagattcaaaagcaattcaggaatattagtgctctcatggattgtgtaggatgtgagaaatgtcgactgtggggaaagctccaggttcttggtcttggaactgcattaaagattctcttctcagttgatggtgaatatcgtcaagatcaacatctgcagttgcaaagaaatgaagtgattgctcttgtaaacctacttaatcggctatcagaatctatcaagctagtacaggaaatgagccctacatatgagaagacaatgaaagggctaagtctacagccagctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="65863" stop="63516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65563" g_stop="65504" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65503" i_stop="65290" i_length="214">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65289" g_stop="65171" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="179" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65170" i_stop="65005" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65004" g_stop="64900" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="284" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64899" i_stop="64799" i_length="101">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64798" g_stop="64596" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="487" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64595" i_stop="64189" i_length="407">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64188" g_stop="64065" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="611" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64064" i_stop="63952" i_length="113">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63951" g_stop="63816" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="747" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E214483" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65563" e_stop="65504"/>
          <exon e_start="65289" e_stop="65171"/>
          <exon e_start="65004" e_stop="64900"/>
          <exon e_start="64798" e_stop="64596"/>
          <exon e_start="64188" e_stop="64065"/>
          <exon e_start="63951" e_stop="63816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGGTCCCTCGGCCAGGCGAATATGGGATGCTATATACTCGGAGAATTGTCCAAAATGTGAGTAAATGATGCTTTCAATTGGTTAGAACTATTTGTTTTACCAATTTTCTTATGAGTCGTATTCTTAGAATTACATTCAGAAGGGAGAGCTTTGAAATGTGTAAATACTTTCTTAAGCTAACCTTCCCCTTGTGGTGCAGTATTGTATTTGTTTACTATTATACGCATTATCATTGTGAATTGAACACAGAAGTTACAATTTTATGGGCAGATGCATCTGGAGAGATTTGCCAGGAGAAAAAGGTTTTATACAAACTTATATCTGGTCTCCACTCCTCAATCTCAATACACATAGCTGCTGATTACCTGCTTGATGAAACTAAAAACCAGGTTAGTTTGCATTTAATATGTAGCATGTTTCTATTATGGTTTGCCAGAAAATGGATAAATAACACTTGCTAAGTTTACAACAGCAGGGCGAACCTGTTACATTCACAAAATAATTCATTATGAATTGTGAACTATTCTAACTTGACTATTTTGCTGCAAATTTCAGTGGGGTACAAATCCAGATCTGATGTATGATCGTGTTCTACAATATCCTGAACGTGTCCGAAACTTGTATTTTACTTTCCTCTTTGTTCTCCGAGCTGTAACAAAAGTGAGTACTTGCTACATATGTCTATATTTTGGTAACTCCTCTAATGGTAACATTGTATAGATTTATTCATTGGGCTACTCCCTTCTTGATATGCTATACAGGCAAAAGATTACTTGGAGCAAGCTGAGTATGATACTGGCAATCCTGAGGAAGACCTTAAAGCACAGTCCCTTATTCGACAGCTACTATACAACCCCAAACTGCAGGCTGCATGTCCAGTTCCGTTTGACGAAGCTAAACTGTGGAAAGGCCAAAGTGGACCTGAGCTAAAGCAGCAGATTCAAAAGCAATTCAGGAATATTAGGTTTCAATTGAACTGTTCTCAATTTAATTTCGTAAATTCAGAAAAGAAAGGCCTAAAGGATGTTATGTTGCTTATACATGCTGGCACCCCCTTTGGACTCTATTTTGAGTTGACTGCATCAGTACATTTATATTTCAGTCTATGTATTCAAATGTATGCAAATCCCATTTTCTTTAAGCATATAGAAACCTATGATTCCAATTTGCATATGCTGCTGCTTTGGTGAGTTTAGTGATCATGGCTGGCTCACCTGGAAAGAATTGGGAAGATGTTCTTTTAGTGAGATGTTGTATTGTTGTTAACACCACAGAAAGAGCTGAAAATCTTGTGTATGCTGTTCAAAGTAGTTGTTGCTATGTACTTGAGCATATGACTGAACAATTTGTTATTCACTTTTCATGTTGCAGTGCTCTCATGGATTGTGTAGGATGTGAGAAATGTCGACTGTGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCAGTTGATGGTGAATATCGTCAAGATCAACATGTGAGTTTTCTTTATTCTTTTTTCATTTGCTGACCTCTCTCTCTGGAACAACTACATGTTATTCACAGCCAACTATGTTTCTTAGTCTCTCTCTCTTCTTATATATTTTACAGCTGCAGTTGCAAAGAAATGAAGTGATTGCTCTTGTAAACCTACTTAATCGGCTATCAGAATCTATCAAGCTAGTACAGGAAATGAGCCCTACATATGAGAAGACAATGAAGGGGCTAAGTCTACAGCCAGCTGCTA</genome_strand>
        <mrna_strand>ACACTGGTCCCTCGGCCAGGCGAATATGGGATGCTATATACTCGGAGAATTGTCCAAAAT......................................................................................................................................................................................................................ATGCATCTGGAGAGATTTGCCAGGAGAAAAAGGTTTTATACAAACTTATATCTGGTCTCCACTCCTCAATCTCAATACACATAGCTGCTGATTACCTGCTTGATGAAACTAAAAACCAG......................................................................................................................................................................TGGGGTACAAATCCAGATCTGATGTATGATCGTGTTCTACAATATCCTGAACGTGTCCGAAACTTGTATTTTACTTTCCTCTTTGTTCTCCGAGCTGTAACAAAA.....................................................................................................GCAAAAGATTACTTGGAGCAAGCTGAGTATGATACTGGCAATCCTGAGGAAGACCTTAAAGCACAGTCCCTTATTCGACAGCTACTATACAACCCCAAACTGCAGGCTGCATGTCCAGTTCCGTTTGACGAAGCTAAACTGTGGAAAGGCCAAAGTGGACCTGAGCTAAAGCAGCAGATTCAAAAGCAATTCAGGAATATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTCATGGATTGTGTAGGATGTGAGAAATGTCGACTGTGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCAGTTGATGGTGAATATCGTCAAGATCAACAT.................................................................................................................CTGCAGTTGCAAAGAAATGAAGTGATTGCTCTTGTAAACCTACTTAATCGGCTATCAGAATCTATCAAGCTAGTACAGGAAATGAGCCCTACATATGAGAAGACAATGAAAGGGCTAAGTCTACAGCCAGCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300826" ref_strand="+" ref_description="SGN-E300826 [cLEW-8-M2]">
      <seq>cggagcgttacactggctacactggtccctcggccaggcgaatatgggatgctatatactcggagaattgtccaaaatatgcatctggagagatttgccaggagaaaaaggttttatacaaacttatatctggtctccactcctcaatctcaatacacatagctgctgattacctgcttgatgaaactaaaaaccagtggggtacaaatccagatctgatgtatgatcgtgttctacaatatcctgaacgtgtccgaaacttgtattttactttcctctttgttctccgagctgtaacaaaagcaaaagattacttggagcaagctgagtatgatactggcaatcctgaggaagaccttaaagcacagtcccttattcgacagctactatacaaccccaaactgcaagctgcatgtccagttccgtttgacgaagctaaactgtggaaaggccaaagtggacctgagctaaagcagcagattcaaaagcaattcacgaatattagtgctctcatggatagcgtaggatgtgagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="65881" stop="63856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65581" g_stop="65504" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65503" i_stop="65290" i_length="214">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65289" g_stop="65171" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="197" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65170" i_stop="65005" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65004" g_stop="64900" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="302" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64899" i_stop="64799" i_length="101">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64798" g_stop="64596" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="505" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64595" i_stop="64189" i_length="407">
            <donor d_prob="0.584" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64188" g_stop="64156" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="538" r_length="33" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E300826" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65581" e_stop="65504"/>
          <exon e_start="65289" e_stop="65171"/>
          <exon e_start="65004" e_stop="64900"/>
          <exon e_start="64798" e_stop="64596"/>
          <exon e_start="64188" e_stop="64156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCGTTACACTGGCTACACTGGTCCCTCGGCCAGGCGAATATGGGATGCTATATACTCGGAGAATTGTCCAAAATGTGAGTAAATGATGCTTTCAATTGGTTAGAACTATTTGTTTTACCAATTTTCTTATGAGTCGTATTCTTAGAATTACATTCAGAAGGGAGAGCTTTGAAATGTGTAAATACTTTCTTAAGCTAACCTTCCCCTTGTGGTGCAGTATTGTATTTGTTTACTATTATACGCATTATCATTGTGAATTGAACACAGAAGTTACAATTTTATGGGCAGATGCATCTGGAGAGATTTGCCAGGAGAAAAAGGTTTTATACAAACTTATATCTGGTCTCCACTCCTCAATCTCAATACACATAGCTGCTGATTACCTGCTTGATGAAACTAAAAACCAGGTTAGTTTGCATTTAATATGTAGCATGTTTCTATTATGGTTTGCCAGAAAATGGATAAATAACACTTGCTAAGTTTACAACAGCAGGGCGAACCTGTTACATTCACAAAATAATTCATTATGAATTGTGAACTATTCTAACTTGACTATTTTGCTGCAAATTTCAGTGGGGTACAAATCCAGATCTGATGTATGATCGTGTTCTACAATATCCTGAACGTGTCCGAAACTTGTATTTTACTTTCCTCTTTGTTCTCCGAGCTGTAACAAAAGTGAGTACTTGCTACATATGTCTATATTTTGGTAACTCCTCTAATGGTAACATTGTATAGATTTATTCATTGGGCTACTCCCTTCTTGATATGCTATACAGGCAAAAGATTACTTGGAGCAAGCTGAGTATGATACTGGCAATCCTGAGGAAGACCTTAAAGCACAGTCCCTTATTCGACAGCTACTATACAACCCCAAACTGCAGGCTGCATGTCCAGTTCCGTTTGACGAAGCTAAACTGTGGAAAGGCCAAAGTGGACCTGAGCTAAAGCAGCAGATTCAAAAGCAATTCAGGAATATTAGGTTTCAATTGAACTGTTCTCAATTTAATTTCGTAAATTCAGAAAAGAAAGGCCTAAAGGATGTTATGTTGCTTATACATGCTGGCACCCCCTTTGGACTCTATTTTGAGTTGACTGCATCAGTACATTTATATTTCAGTCTATGTATTCAAATGTATGCAAATCCCATTTTCTTTAAGCATATAGAAACCTATGATTCCAATTTGCATATGCTGCTGCTTTGGTGAGTTTAGTGATCATGGCTGGCTCACCTGGAAAGAATTGGGAAGATGTTCTTTTAGTGAGATGTTGTATTGTTGTTAACACCACAGAAAGAGCTGAAAATCTTGTGTATGCTGTTCAAAGTAGTTGTTGCTATGTACTTGAGCATATGACTGAACAATTTGTTATTCACTTTTCATGTTGCAGTGCTCTCATGGATTGTGTAGGATGTGAGAAATG</genome_strand>
        <mrna_strand>CGGAGCGTTACACTGGCTACACTGGTCCCTCGGCCAGGCGAATATGGGATGCTATATACTCGGAGAATTGTCCAAAAT......................................................................................................................................................................................................................ATGCATCTGGAGAGATTTGCCAGGAGAAAAAGGTTTTATACAAACTTATATCTGGTCTCCACTCCTCAATCTCAATACACATAGCTGCTGATTACCTGCTTGATGAAACTAAAAACCAG......................................................................................................................................................................TGGGGTACAAATCCAGATCTGATGTATGATCGTGTTCTACAATATCCTGAACGTGTCCGAAACTTGTATTTTACTTTCCTCTTTGTTCTCCGAGCTGTAACAAAA.....................................................................................................GCAAAAGATTACTTGGAGCAAGCTGAGTATGATACTGGCAATCCTGAGGAAGACCTTAAAGCACAGTCCCTTATTCGACAGCTACTATACAACCCCAAACTGCAAGCTGCATGTCCAGTTCCGTTTGACGAAGCTAAACTGTGGAAAGGCCAAAGTGGACCTGAGCTAAAGCAGCAGATTCAAAAGCAATTCACGAATATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTCATGGATAGCGTAGGATGTGAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312611" ref_strand="+" ref_description="SGN-E312611 [cLEZ-20-F19]">
      <seq>gaagaattgttgtgatggtggaagaaaatgaagttaacgagctgaagaggacggagaatgagaagaggagaagtgggtggcgattgggtcgatcagcaattgcagcgattttggtgttgatgatagcatttggtgtgacttttttgtatacagaggagggaaaatcatgtccttgttttcaggactctagaaaatatactgggatagttgaagactgttgttgtgattatgaaaccgttgacgctattaatggcgctgtgctgcatcctttactccaagggcttgttacaactcccttctttagatactttaaggttaagctgtggtgtgactgccctttttggcctgatgatggtatgtgtaagttacgagattgcagtgtatgcgaatgtccagaaactgagttccccgaatcttttaggagacctccacttggccttgctgctgatgatctgaaatgccaagagggaaaaccagatgcagctgttgaccgcactctcaactccaaggtttttatgggatggatagaggtagataatccttggacagttgatgatgaaacagataatggtgagatgacatatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="67996" stop="65597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67696" g_stop="67515" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67514" i_stop="66757" i_length="758">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66756" g_stop="66625" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="314" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66624" i_stop="66168" i_length="457">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66167" g_stop="65912" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="570" r_length="256" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65911" i_stop="65615" i_length="297">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65614" g_stop="65598" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="587" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E312611" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67696" e_stop="67515"/>
          <exon e_start="66756" e_stop="66625"/>
          <exon e_start="66167" e_stop="65912"/>
          <exon e_start="65614" e_stop="65598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAATTGTTGTGATGGTGGAAGAAAATGAAGTTAACGAGCTGAAGAAGACGGAGAATGAGAAGAGGAGAAGTGGGTGGCGATTGGGTCGATCAGCAATTGCAGCGATTTTGGTGTTGATGATAGCATTTGGTGTGACTTTTTTGTATACAGAGGAGGGAAAATCATGTCCTTGTTTTCAGGTTTTTTTCTTTTTCGCTCATTAAAATTAGGGTTTGTTTATCTTATTATTGTATAGTTTTGGTGTGATTAGAGAAATGTGAAGATTTTTATTGAAGTTTGTTGATCATTACTTGTTTAAATTCCTGGTAGAATGGAGAATCTTATAAAATTGTGAAACTGTAAATCAAATGCTTAATTGTGGGATTTTCTGATGTTGAAGTAAGTTTTGAGTTTGTACGAGTTGTTAAAACTGGAAATATCAATAGCCCATGTTGCATTAGTAATTCTTGTTGAATATGAGCATTTAGCTTTTGAAAAAAGTGTGCTGATCACTGTATTGTTTTGTTTTGGTGGGTGGATAAAGTTCCTTTCAATCCTGCTTTGATTGCGCTTCTTCTGAGGTGAGGGTGTACTTTTTCGAGGCCCCACTTGTGAAATTACACTGGGTATGTTGTTGTTTTTGTTGTTGGTGGTGGATAGCTAAACCATGATTGCTTTGGTACCAAAGTGGTATGGTTCTACGATGGAGTTATTAGGTTGTGTGTAAAAGTGTTTAATTCATAGTTTTGGTTTAGTTATTGATAATTGAGAAGACACTCCGGCTCGTGAGTATCTTCCCTAAATTTATATGAACAAGAATCTAGTTATTGGCAGAGCTGCTGGCGAAATTGATTTTTAGGAATCTCATGTTTACTGAAATTTTAAAAGATTGTGTATGCTTCTAGCTATTTGAATTATACAATTCTGACGGACTGTTTGCTTCTTGACCTTAATGCAGGACTCTAGAAAATATACTGGGATAGTTGAAGACTGTTGTTGTGATTATGAAACCGTTGACGCTATTAATGGCGCTGTGCTGCATCCTTTACTCCAAGGGCTTGTTACAACTCCCTTCTTTAGATACTTTAAGGTATGGTGCAAAATCTAACCAATATGAGGAATCTTACCAATTGATGATCGTATTTTCAATTGAATTGATGGTTTTAAAAAATTTCCTCTACATTCTTGTTCTAAAGTTGATTTGATTGCCAAGAGAGGAAAGAGATAGTGTCACAAAGTTAATTCTATTGAATTTTGCGGCATATGGTTATCCGGAAAGTTGTGGGCTAAGCAATTTAAAACTTATCCAACTGTGCCAAAAAAAAAAAGTAGGAAAACGGTTTCTTCTCCTTTAAAATCTTGCCTTTTCTTTCCAAACCTTTATGTACAAGAAAGTGACTTTTGAACTTGATGGACATCTTAAAGAAGCCTAAGGAAAAGTTTCTCTCATTTATTTTATAATAAGCCCAAAACTAAGGTCAATCATGCCTTCCTTCGAAATCGTGAAAAGGTGATTTGACAACTTGATGCATATCTAATGGCTGCAGGTTAAGCTGTGGTGTGACTGCCCTTTTTGGCCTGATGATGGTATGTGTAAGTTACGAGATTGCAGTGTATGCGAATGTCCAGAAACTGAGTTCCCCGAATCTTTTAGGAGACCTCCACTTGGCCTTGCTGCTGATGATCTGAAATGCCAAGAGGGAAAACCAGAGGCAGCTGTTGACCGCACTCTCGACTCCAAGGTTTTTAGGGGATGGATAGAGGTAGATAATCCTTGGACAGTTGATGATGAAACAGATAATGGTAATTGATCTATCTTTGTTAATACACAGAGGTTTTCCTTTCTACATTTTTGGAGTCTTGGTATATCTTTCGATCCTTTCCAAACTTTTGTTTGTGACTTCACCAATAAACAATTGTATGATCAGGCATAAGATGAAGCAATTTGTAGTTATTATCAATTTGAGTTGTATTGAAGTTCTTAAACTCAACGATTATATTGCATTGGGAGTTTAAAACTTATATAATGTCATGTATGATATCACTACTTCTTGAAGGTTTCTATTTAGAGTACTAAGTTGCTGAACTTCTTCCTTGCAGGTGAGATGACATATGTC</genome_strand>
        <mrna_strand>GAAGAATTGTTGTGATGGTGGAAGAAAATGAAGTTAACGAGCTGAAGAGGACGGAGAATGAGAAGAGGAGAAGTGGGTGGCGATTGGGTCGATCAGCAATTGCAGCGATTTTGGTGTTGATGATAGCATTTGGTGTGACTTTTTTGTATACAGAGGAGGGAAAATCATGTCCTTGTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAGAAAATATACTGGGATAGTTGAAGACTGTTGTTGTGATTATGAAACCGTTGACGCTATTAATGGCGCTGTGCTGCATCCTTTACTCCAAGGGCTTGTTACAACTCCCTTCTTTAGATACTTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGCTGTGGTGTGACTGCCCTTTTTGGCCTGATGATGGTATGTGTAAGTTACGAGATTGCAGTGTATGCGAATGTCCAGAAACTGAGTTCCCCGAATCTTTTAGGAGACCTCCACTTGGCCTTGCTGCTGATGATCTGAAATGCCAAGAGGGAAAACCAGATGCAGCTGTTGACCGCACTCTCAACTCCAAGGTTTTTATGGGATGGATAGAGGTAGATAATCCTTGGACAGTTGATGATGAAACAGATAATG.........................................................................................................................................................................................................................................................................................................GTGAGATGACATATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315416" ref_strand="+" ref_description="SGN-E315416 [cTOA-22-E10]">
      <seq>ttcaacgaataagagtttaattagtgtttttttgatttttttgggtcgaagattttaggggttttgtggaagaattgttgtgatggtggaagaaaatgaagttaacgagctgaagaagacggagaatgagaagaggagaagtgggtggcgattgggtcgatcagcaattgcagcgattttggtgttgatgatagcatttggtgtgacttttttgtatacagaggagggaaaatcatgtccttgttttcaggactctagaaaatatactgggatagttgaagactgttgttgtgattatgaaaccgttgacgctattaatggcgctgtgctgcatcctttactccaagggcttgttacaactcccttctttagatactttaaggttaagctgtggtgtgactgccctttttggcctgatgatggtatgtgtaagttacgagattgcagtgtatgcgaatgtccagaaactgagttccccgaatcttttaggagacctccacttggccttgctgctgatgatctgaaatgccaagagggaaaaccagaggcagctgttgaccgcactctcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="68064" stop="65678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67764" g_stop="67515" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67514" i_stop="66757" i_length="758">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66756" g_stop="66625" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="382" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66624" i_stop="66168" i_length="457">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66167" g_stop="65978" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="572" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E315416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67764" e_stop="67515"/>
          <exon e_start="66756" e_stop="66625"/>
          <exon e_start="66167" e_stop="65978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACGAATAAGAGTTTAATTAGTGTTTTTTTGATTTTTTTGGGTCGAAGATTTTAGGGGTTTTGTGGAAGAATTGTTGTGATGGTGGAAGAAAATGAAGTTAACGAGCTGAAGAAGACGGAGAATGAGAAGAGGAGAAGTGGGTGGCGATTGGGTCGATCAGCAATTGCAGCGATTTTGGTGTTGATGATAGCATTTGGTGTGACTTTTTTGTATACAGAGGAGGGAAAATCATGTCCTTGTTTTCAGGTTTTTTTCTTTTTCGCTCATTAAAATTAGGGTTTGTTTATCTTATTATTGTATAGTTTTGGTGTGATTAGAGAAATGTGAAGATTTTTATTGAAGTTTGTTGATCATTACTTGTTTAAATTCCTGGTAGAATGGAGAATCTTATAAAATTGTGAAACTGTAAATCAAATGCTTAATTGTGGGATTTTCTGATGTTGAAGTAAGTTTTGAGTTTGTACGAGTTGTTAAAACTGGAAATATCAATAGCCCATGTTGCATTAGTAATTCTTGTTGAATATGAGCATTTAGCTTTTGAAAAAAGTGTGCTGATCACTGTATTGTTTTGTTTTGGTGGGTGGATAAAGTTCCTTTCAATCCTGCTTTGATTGCGCTTCTTCTGAGGTGAGGGTGTACTTTTTCGAGGCCCCACTTGTGAAATTACACTGGGTATGTTGTTGTTTTTGTTGTTGGTGGTGGATAGCTAAACCATGATTGCTTTGGTACCAAAGTGGTATGGTTCTACGATGGAGTTATTAGGTTGTGTGTAAAAGTGTTTAATTCATAGTTTTGGTTTAGTTATTGATAATTGAGAAGACACTCCGGCTCGTGAGTATCTTCCCTAAATTTATATGAACAAGAATCTAGTTATTGGCAGAGCTGCTGGCGAAATTGATTTTTAGGAATCTCATGTTTACTGAAATTTTAAAAGATTGTGTATGCTTCTAGCTATTTGAATTATACAATTCTGACGGACTGTTTGCTTCTTGACCTTAATGCAGGACTCTAGAAAATATACTGGGATAGTTGAAGACTGTTGTTGTGATTATGAAACCGTTGACGCTATTAATGGCGCTGTGCTGCATCCTTTACTCCAAGGGCTTGTTACAACTCCCTTCTTTAGATACTTTAAGGTATGGTGCAAAATCTAACCAATATGAGGAATCTTACCAATTGATGATCGTATTTTCAATTGAATTGATGGTTTTAAAAAATTTCCTCTACATTCTTGTTCTAAAGTTGATTTGATTGCCAAGAGAGGAAAGAGATAGTGTCACAAAGTTAATTCTATTGAATTTTGCGGCATATGGTTATCCGGAAAGTTGTGGGCTAAGCAATTTAAAACTTATCCAACTGTGCCAAAAAAAAAAAGTAGGAAAACGGTTTCTTCTCCTTTAAAATCTTGCCTTTTCTTTCCAAACCTTTATGTACAAGAAAGTGACTTTTGAACTTGATGGACATCTTAAAGAAGCCTAAGGAAAAGTTTCTCTCATTTATTTTATAATAAGCCCAAAACTAAGGTCAATCATGCCTTCCTTCGAAATCGTGAAAAGGTGATTTGACAACTTGATGCATATCTAATGGCTGCAGGTTAAGCTGTGGTGTGACTGCCCTTTTTGGCCTGATGATGGTATGTGTAAGTTACGAGATTGCAGTGTATGCGAATGTCCAGAAACTGAGTTCCCCGAATCTTTTAGGAGACCTCCACTTGGCCTTGCTGCTGATGATCTGAAATGCCAAGAGGGAAAACCAGAGGCAGCTGTTGACCGCACTCTCGACT</genome_strand>
        <mrna_strand>TTCAACGAATAAGAGTTTAATTAGTGTTTTTTTGATTTTTTTGGGTCGAAGATTTTAGGGGTTTTGTGGAAGAATTGTTGTGATGGTGGAAGAAAATGAAGTTAACGAGCTGAAGAAGACGGAGAATGAGAAGAGGAGAAGTGGGTGGCGATTGGGTCGATCAGCAATTGCAGCGATTTTGGTGTTGATGATAGCATTTGGTGTGACTTTTTTGTATACAGAGGAGGGAAAATCATGTCCTTGTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAGAAAATATACTGGGATAGTTGAAGACTGTTGTTGTGATTATGAAACCGTTGACGCTATTAATGGCGCTGTGCTGCATCCTTTACTCCAAGGGCTTGTTACAACTCCCTTCTTTAGATACTTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGCTGTGGTGTGACTGCCCTTTTTGGCCTGATGATGGTATGTGTAAGTTACGAGATTGCAGTGTATGCGAATGTCCAGAAACTGAGTTCCCCGAATCTTTTAGGAGACCTCCACTTGGCCTTGCTGCTGATGATCTGAAATGCCAAGAGGGAAAACCAGAGGCAGCTGTTGACCGCACTCTCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329244" ref_strand="+" ref_description="SGN-E329244 [cTOD-2-O12]">
      <seq>attcatcggttcttcaaatataacggcttcgattctgcgaatgaacagtagttgacactgaaagtcgtttcataattcaacgaataagagtttaattagtgtttttttgatttttttgggtcgaagattttaggggttttgtggaagaattgttgtgatggtggaagaaaatgaagttaacgagctgaagaagacggagaatgagaagaggagaagtgggtggcgattgggtcgatcagcaattgcagcgattttggtgttgatgatagcatttggtgtgacttttttgtatacagaggagggaaaatcatgtccttgttttcaggactctagaaaatatactgggatagttgaagactgttgttgtgattatgaaaccgttgacgctattaatggcgctgtgctgcatcctttactccaagggcttgttacaactcccttctttagatactttaaggttaagctgtggtgtgactgccctttttggcctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="68139" stop="65829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67839" g_stop="67515" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67514" i_stop="66757" i_length="758">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66756" g_stop="66625" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="457" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66624" i_stop="66168" i_length="457">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66167" g_stop="66129" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="496" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E329244" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67839" e_stop="67515"/>
          <exon e_start="66756" e_stop="66625"/>
          <exon e_start="66167" e_stop="66129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATCGGTTCTTCAAATATAACGGCTTCGATTCTGCGAATTAACAGTAGTTGACACTGAAATTCGTTTCATAATTCAACGAATAAGAGTTTAATTAGTGTTTTTTTGATTTTTTTGGGTCGAAGATTTTAGGGGTTTTGTGGAAGAATTGTTGTGATGGTGGAAGAAAATGAAGTTAACGAGCTGAAGAAGACGGAGAATGAGAAGAGGAGAAGTGGGTGGCGATTGGGTCGATCAGCAATTGCAGCGATTTTGGTGTTGATGATAGCATTTGGTGTGACTTTTTTGTATACAGAGGAGGGAAAATCATGTCCTTGTTTTCAGGTTTTTTTCTTTTTCGCTCATTAAAATTAGGGTTTGTTTATCTTATTATTGTATAGTTTTGGTGTGATTAGAGAAATGTGAAGATTTTTATTGAAGTTTGTTGATCATTACTTGTTTAAATTCCTGGTAGAATGGAGAATCTTATAAAATTGTGAAACTGTAAATCAAATGCTTAATTGTGGGATTTTCTGATGTTGAAGTAAGTTTTGAGTTTGTACGAGTTGTTAAAACTGGAAATATCAATAGCCCATGTTGCATTAGTAATTCTTGTTGAATATGAGCATTTAGCTTTTGAAAAAAGTGTGCTGATCACTGTATTGTTTTGTTTTGGTGGGTGGATAAAGTTCCTTTCAATCCTGCTTTGATTGCGCTTCTTCTGAGGTGAGGGTGTACTTTTTCGAGGCCCCACTTGTGAAATTACACTGGGTATGTTGTTGTTTTTGTTGTTGGTGGTGGATAGCTAAACCATGATTGCTTTGGTACCAAAGTGGTATGGTTCTACGATGGAGTTATTAGGTTGTGTGTAAAAGTGTTTAATTCATAGTTTTGGTTTAGTTATTGATAATTGAGAAGACACTCCGGCTCGTGAGTATCTTCCCTAAATTTATATGAACAAGAATCTAGTTATTGGCAGAGCTGCTGGCGAAATTGATTTTTAGGAATCTCATGTTTACTGAAATTTTAAAAGATTGTGTATGCTTCTAGCTATTTGAATTATACAATTCTGACGGACTGTTTGCTTCTTGACCTTAATGCAGGACTCTAGAAAATATACTGGGATAGTTGAAGACTGTTGTTGTGATTATGAAACCGTTGACGCTATTAATGGCGCTGTGCTGCATCCTTTACTCCAAGGGCTTGTTACAACTCCCTTCTTTAGATACTTTAAGGTATGGTGCAAAATCTAACCAATATGAGGAATCTTACCAATTGATGATCGTATTTTCAATTGAATTGATGGTTTTAAAAAATTTCCTCTACATTCTTGTTCTAAAGTTGATTTGATTGCCAAGAGAGGAAAGAGATAGTGTCACAAAGTTAATTCTATTGAATTTTGCGGCATATGGTTATCCGGAAAGTTGTGGGCTAAGCAATTTAAAACTTATCCAACTGTGCCAAAAAAAAAAAGTAGGAAAACGGTTTCTTCTCCTTTAAAATCTTGCCTTTTCTTTCCAAACCTTTATGTACAAGAAAGTGACTTTTGAACTTGATGGACATCTTAAAGAAGCCTAAGGAAAAGTTTCTCTCATTTATTTTATAATAAGCCCAAAACTAAGGTCAATCATGCCTTCCTTCGAAATCGTGAAAAGGTGATTTGACAACTTGATGCATATCTAATGGCTGCAGGTTAAGCTGTGGTGTGACTGCCCTTTTTGGCCTGATGAT</genome_strand>
        <mrna_strand>ATTCATCGGTTCTTCAAATATAACGGCTTCGATTCTGCGAATGAACAGTAGTTGACACTGAAAGTCGTTTCATAATTCAACGAATAAGAGTTTAATTAGTGTTTTTTTGATTTTTTTGGGTCGAAGATTTTAGGGGTTTTGTGGAAGAATTGTTGTGATGGTGGAAGAAAATGAAGTTAACGAGCTGAAGAAGACGGAGAATGAGAAGAGGAGAAGTGGGTGGCGATTGGGTCGATCAGCAATTGCAGCGATTTTGGTGTTGATGATAGCATTTGGTGTGACTTTTTTGTATACAGAGGAGGGAAAATCATGTCCTTGTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAGAAAATATACTGGGATAGTTGAAGACTGTTGTTGTGATTATGAAACCGTTGACGCTATTAATGGCGCTGTGCTGCATCCTTTACTCCAAGGGCTTGTTACAACTCCCTTCTTTAGATACTTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGCTGTGGTGTGACTGCCCTTTTTGGCCTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368293" ref_strand="+" ref_description="SGN-E368293 [TUS-26-G24]">
      <seq>aaaaaatgggagatgaagtagtattgcttgatttatgggttagtccctttggtatgagggtgagaattgccctgaaagaaaagggcataaattatgaatccaaggaagaaaatttgagcaacaagagctcattgctcctaaaaatgaaccctatccataagcaaatcccagttttaattcacaatggaaagcctatttgtgaatccctcatcattgttcagtacattgatgaagtttggaaggacaaagctccactcttaccttctgatccttatgaaagagcccatgctaaattttgggctgattatgttgacaaaaagatatatagtacagggagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="72904" stop="71982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72604" g_stop="72285" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E368293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72604" e_stop="72285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGGGAGATGAAGTAGTATTGCTTGATTTATGGGTTAGTCCCTTTGGTATGAGGGTGAGAATTGCCCTGAAAGAAAAGGGCATAAATTATGAATCCAAGGAAGAAAATTTGAGCAACAAGAGCTCATTGCTCCTAAAAATGAACCCTATCCATAAGCAAATCCCAGTTTTAATTCACAATGGAAAGCCTATTTGTGAATCCCTCATCATTGTTCAGTACATTGATGAAGTTTGGAAGGACAAAGCTCCACTCTTACCTTCTGATCCTTATGAAAGAGCCCATGCTAAATTTTGGGCTGATTATGTTGACAAAAAG</genome_strand>
        <mrna_strand>AAAAAATGGGAGATGAAGTAGTATTGCTTGATTTATGGGTTAGTCCCTTTGGTATGAGGGTGAGAATTGCCCTGAAAGAAAAGGGCATAAATTATGAATCCAAGGAAGAAAATTTGAGCAACAAGAGCTCATTGCTCCTAAAAATGAACCCTATCCATAAGCAAATCCCAGTTTTAATTCACAATGGAAAGCCTATTTGTGAATCCCTCATCATTGTTCAGTACATTGATGAAGTTTGGAAGGACAAAGCTCCACTCTTACCTTCTGATCCTTATGAAAGAGCCCATGCTAAATTTTGGGCTGATTATGTTGACAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252924" ref_strand="+" ref_description="SGN-E252924 [cLEG-25-E11]">
      <seq>tcaaaaaatgggagatgaagtagtattgctagatttatgggttagtcccttcggtgtgagggtgagaattgccctgaaagaaaagggcataaattatgaatccaaggaagaaaatttgagcaacaagagctcattgctcctaaaaatgaaccctatccataagcaaatcccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="72906" stop="72134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72606" g_stop="72434" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E252924" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72606" e_stop="72434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAAATGGGAGATGAAGTAGTATTGCTTGATTTATGGGTTAGTCCCTTTGGTATGAGGGTGAGAATTGCCCTGAAAGAAAAGGGCATAAATTATGAATCCAAGGAAGAAAATTTGAGCAACAAGAGCTCATTGCTCCTAAAAATGAACCCTATCCATAAGCAAATCCCAG</genome_strand>
        <mrna_strand>TCAAAAAATGGGAGATGAAGTAGTATTGCTAGATTTATGGGTTAGTCCCTTCGGTGTGAGGGTGAGAATTGCCCTGAAAGAAAAGGGCATAAATTATGAATCCAAGGAAGAAAATTTGAGCAACAAGAGCTCATTGCTCCTAAAAATGAACCCTATCCATAAGCAAATCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369217" ref_strand="+" ref_description="SGN-E369217 [TUS-23-O12](-)">
      <seq>aaatcaccagatcagtgcatcttgcttgagtatgatgttcagtctcgtgcaaaggtggaagaattaaaaaaagagctccatcaggaagcttcatcatttctaagaacatgtggttggtcagaagaagtttatgcttttatgcgttccaaaaagtcggggacacaatcaaactttcaagcatcagatgttaatgcgatgaaggagttgttgattgcagatgccaaatcaatgtttatctcacaaattcctcaatcattgaagggcagtcttattgaacgtttaacatcatttagtcaaggaacaccaccctccagtacctaagcacacttggacatgtccattgacgaaggtgctgattttcttggcctgtattctttgtcagttggagatggaatgtctgtttgcgcagacgattataagttgtctttgattttcttcagtcagctgtactgtatcaccaaatgtgttcattcaggtaaaagaggaaatcaaagtggcaacatcttattccggtagacatattttcttgagaggtaggagagcctatagaagcagcgtaaattccttttgtgatgtatgatatatgcccattttgccgtagttttttagcatgtaatcctcattttatggatgcttaccaatttttttccataaaattgtggtcgaggttgtattgttgaatctggagatgaggtttcactttcgaacatacatacattataataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="79855" stop="72849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79555" g_stop="79482" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79481" i_stop="78846" i_length="636">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.416" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78845" g_stop="78720" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="200" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78719" i_stop="73751" i_length="4969">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73750" g_stop="73615" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="336" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73614" i_stop="73538" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73537" g_stop="73141" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="733" r_length="397" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E369217" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79555" e_stop="79482"/>
          <exon e_start="78845" e_stop="78720"/>
          <exon e_start="73750" e_stop="73615"/>
          <exon e_start="73537" e_stop="73141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACCAGATCAGTGCATCTTGCTTGAGTATGATGTTCAGTCTCGTGCAAAGGTGGAAGAATTAAAAAAAGAGTATGTTACTCTTTCTTTGATTACCTGCATTCCTTTGCCTTAGTATTATTTAAGTATTATTATAACACAGTGACAGAAGTTTTGAATTCATTATATTTGTCCTTGCATTTGCTAGAACTTGAGACTGTGGTTTGAAAATGCTAGGGGTTTCTTTTACGTATTTTGCTGCAAAGTAGCTTTAGCTGAATTTTGATCTTGCCTTTTACTGGGGTTCTCCTGATAACATAGGATGCAAATGCATTTTGCTTTTATTGTCATTTCTCTTAATTAGGGCCATATATTATATATCCTTAAGAATTAATAAACTGGGACCGCTCATCTCTATGATATTGGTTAACATATCTTATGTTGGCCTTACTAACAATGTACTGAGGAGTTCTGGGAAAGGAGGTTGAATAGGACTTTGACCCTAGCTGTTAAGTTCAGATTCTTACTGTTCTCAAGCTATACAATCGGGAAGCTCCCTTTTGCTGTCATCTCCTCTAGTGGTTAGAGATCATGAAGTGCTTTCTACTTCCAGTGTCCTGCTAAATAAACTTTTTTTATGAAACTGGCAACTAGCTAAATAAACAGTTCACAACTTTATCTTATATCCGCAACGTGATTATTTAACCCTATCTTTCGAATGAGTTTCAGGCTCCATCAGGAAGCTTCATCATTTCTAAGAACATGTGGTTGGTCAGAAGAAGTTTATGCTTTTATGCGTTCCAAAAAGTCGGGGACACAATCAAACTTTCAAGCATCAGATGTTAATGCGATGAAGTAAGTTCCTCTAGCTTTGCAGTTTGAATTAGTTTAATTAAGACTACCTATTTGTCCTTGAGGTCGGAAGTTATTTCTCTCTTCTTTGTTTGCTTTAGTACAAATTTTGATAAATAGATACTTTGGAAAACTAAAATATGTATGGGGTACTATTACCTTGTTTCTTATCATTGTTTATTCCAAAGTTGTGTGGCCTGCTATCTTTTTGTCTTTTTCACTAGATGATGCAGTATTTTACTACCATCATAAAAGTAAACTTAGCATTTCTGTGTACATGTTTAGGTATTGGGGCATAGTTGCATATATTTTCTACTATCTTTGTATTCCTACCAAACTGAAAAGAAAGGCACAGTACATCCAAACTTTCTTCTTCATCTTCGTGTTTAAACTACGTTGCTCAAGTTGGACGTGGACTGTCTTGCAAGGGGAAAAGATTAAGAGGTTGCTTTGATGTGAACATGATAAAGTTAACTGCCAAAGGATATGTTTAAGTTCCAACAATTGCATTTTTTGAGAAATCTCTCAGTGAGACTAGCTCCTGTACTTTTCAAAAAAGAATATTTGGATCTAATGCTGAGGAATATGAATTACCAATTTTCAAAAAGAATAGTTGGAAATGAATACGTCGAGTTAATTCTCTTTGGGTTTGGAATAGTACAAATTTCATTTCTGTCATTGGTTAAGTTTGATATTTACTCTATCAAGGTGTAGTGTTGTCCCTTTTCATTTTGGTGCTATTATCAAGGAAAATTGAACTACTATTCTACTAAAATGTAAGTGGTCCAATATGAGTGGGGGGGGGGGGGGGGACTGGGGAGGGGGCAATTGTTTGGTCACCAATATTGTAGCTAGGTTTTTAAGATTTTAATGTATATGTAGAGTTGATTCTATTTGGGTTTGGAATAGTACTAAGTAATTTACCTAAATAAGCGGGTGTAGCAGAAAGAATAAAATCTCTCTTGTGTTGGAGAGTTTTCCCAATTTCATTTCTGTCATTGGTTAACTTTGATATTTACTTGATGGTGTATTGTTGTCCCTTTTCATTTTGGTGCAATTATCAAGGAAAATTTGAGCTATTATTCTACTAAAATGTAAATGGTCCAAAATGAGCATAAAGTTGATTGTCTGGAAAATTTTAACATCATTAACATTGAAGTAGGTCCCGAAATATCTCTCTATGATAGAATTATGGGGAAATCATGGAGAAGCATGCAGAAAAAGTATTTTGCTAACTGCACAAGAAGTTTTTAATTTGAGAAAGTGGATTTAGTTTAGGGATTCTGAAGGTGTTAAAAGGGGTCGCGTTAGAACTAATCACTTGGATGAGAGTTTTCTCGAATGATGTGATCTGTTGGATCCACAAGACCTAGCAAAAGTAGGACAGACTGGAGGAAAAAGATCTGAATAGGTGAATACCTATCAGTTGAGACCATGTTTTTGCTACAGTAGTATATTTACTTTAGGTCTTATGTCTTCTAGGAGGTTTTTTTTTTTGAAACTGGAGTCTTGTTTTCTAGTTATCTTTTGTTCTTAGCTGAGATTTATATGTCAACAATTATTTATTATTTTTATTGTTTTTACTATTTTTGTTATTGCACAATATGGGGTCAATGGTTGGGCTTAAATAGAGCAGTATGGTCGGTGAGAATTCATAAGGTCCATCCCAACTTGCTCGGGATTGAGGTGTAGTGGTTGTTGGACTTAGCTTAGGGACAATCTATACAAAAAGATGGAAAGATACAATTTCCCTCATCTTTTTTCGTGAAACAGGGAAAAGACACCTCTATTTTCCCTCCTCCATTTTCCTACTTGAGTGTTATTTAATCAGCCAAACAGCGCTTCACCTGCAAATCGGCCCAGTAGTGCTTCATGGTCTACCCAATAGTGCTGCATATCTAAACCACTCTGTCTAAGATTGGTAAACATAACACAGCAGACATCGTTTTTGGCTCTTTTTACTTTGTGGCTAAAAGTTCTCCAGCAATACATAATTTAACTTGGGACGAGAAAGTACTGTTCAATAACAATACGTTGAGTGGATTAACTACAGAGGATTCATATAGTTTCAACTCGAATTAATAGCACTGAGCCATACTTGATTGAGTTTTATTGACAGTGAATGGAAATTTGGTTTTATCAAAAGTGATTGACAAGTGTTTCCTTCCATTTTTAAACAAGGTAAGTGACCTGCAAGCTCTTTTTTCTGTGTTCTTGCTTTAGTGTGTTGTTTGAAGATATTCTGTTTTTGCCTCTTCTATTCCAGATCTAATTGTTGAATTCCCCGACTCCTTTGACTGCATCCACCACTCACCACATGTACTGTTTGTTGTTGCCTTGGCTCATATTCTATTTGTCCTCTCCACAACACAATTCTGTCTTCCCACTTTTGTCCTGTTCCTTTTTTCTTTTTCACAATGTGCAGTATATGAACTGAGAGAGAAGTGTGTCCCTAATTAATTGTGCCCGGTGCTGTTTGCTTGCCATTATGTTATTTCGTGATAATTCTTGTAGCTTGTATTGCAAAATGTTTTTTGATTACAAATGAAAAGGAAAAGTACCATTCGAGCACGTCAAGATCTTTGTTGCTTATTCTTGTGATTGTCCTTCTTGTTGCTGTTGTTTGGAGGTAAGATTGTCACTGCATCTCAATGCATTATTAGTATTTGTAACATGGTGCACTTGACTTGAAATGTATCCTTGGGTGAACACAACAATGTCAACGAGTGTTAAGATTCTTTCATATTCTTTTTTTGATGAAATAAGTAGTGTATTAATAAGCAAAGCATCCAGCAGATGCATAATTACAGAAGTAGGAAGAGTCAGCTCAAATAATGGACAAAAAAAACTTATCTAAGGACTAGTGAGCTTACTAATTCCAAGAAAATATCAGTGCTAAAAGCAGGTGTAAGATTAACCCAACATAAGAGTAGAACTAAGCATCTGGCCTGGAGCTTGGAGTTGACAGTTGATTCCTCTCTGTCTATAAGCACCACAAAATAGAAGCTGGAACCATAGATTTTTGATAAACCAGATCTTTTTGATGGATTTCTCAACTAACCTTTAGTTCCAGTTAACAAAAATGAAAAATCTCTCTAATACTAAAGGGCATAAACCCACTGTAAGCCAAGGAAGGATAAGTACGTAGATGATAGACCAGATGTCTGAAGCAACATGGAGTGATGGAGATGTAAGAATAAATGATTGACAGATTCTTGATTGTAATGCACATGTTACATCTGTTAGCTAGGTGACATCTCCTTCTTTTATGATTAGCTTTAGTCAGAACTCAGAAGGCATTTCGTAAGGCTAACCAACAGAAGTCTTGGAGTTTGGGAGGCATTTTCTCCTGTCATACAAGCTTCCAAGGCCACTGATCAATTAGAGCTTTATTGGAGCTCATGAGTTGATAGTTGGCTTTGACCAAGTATAAGCCATCCAAGTTGTTGCCCCATCTGAACATGTCCTCTGAGGATTGATGGCAATATGCTGTAAAATGCCAAGGAGGCCTGACAGTTCTTTGAACTCCCAGTCATTCATATTTCTTCTCAAGCTTGGATGCCAAGTATTTCCCTCTCAATTCTCGATAAGAGTAGTCACGATTGGAAGCAATGGGGAAAATCGTGGGGCACGCTTAAGCTTCCTTCAGAGTCAATTGATGTAACCATAGATCTTTACAGAAAAGAATATAATTCCCATCATCCACCTGCAAAGATGAATTCTTGAGAAAAGAATGGACGCAACACTTTATTCTCTTCTACCGCTCTTTGTTTACTTCTGGCCTTCCCAAACTCCTACATGGGGGGTGTCAGATCTTGGAGTAAGCTCCCTTCAACACCTAAGTGCTTTTTCTTACACCTATTTAGCTAATGGGGCATTGGTGATTGGTCACAGCCGAAATTCTGTCAAGCTGCAGAAGAACTTCTGAAGGGGTGGGGATTAGGGACATAAATTAAGTAGGGATGCTGCTACCAAAAGAAAGATATTGTTGTTTCCAAAGCTAACCTCTTTTTCCAGTTTCTGAACAATCCCAGATAGGTGGTTGGAAAACAATCTGTATTGCAACACATAGTCTCACCTAGCTCATCCAATTCAGGAACCAAATTAACAGGATAAATGACACTTTAAATATGTGATGTGAAGCCCAGGGAGTGCCTCAAAGATTATCTAAATAATTTTTAAGTGTTAGACCTCTGACCTCTCATGACAACAGAAGATGTGAGAGTGCCATCAGCAGACAACCCATGAGAAACAGAGGCTGAGGTATTAGTCCCATTGCCAATACCAAAACCCTCCAGCCAGTTGAGTTGTTAAGCCTTGTCTATCATCCTGCTAAGACCCTCCATGGCTAGTAAGAAAAGAAAGGGGGATGGGGGTCCCTTGCTTTATTCCTCTCTTGAGAGAGAAATTCCAACTGGACTCCTGTGAACCAACACAGAATATTTAACTGTAGTGAATAATCCATTTGTCTCCAAAGCCCATCTGCCTCAAGATAGATAATAGGTACTTACTGTTTAATTTGTCAAAGGCCTTTTCTGTCCAGTTTAAATAGCAGCCCAGAAACACCACTCTTAAATCTCCAGTCAAGGGTGGGCCTCTGTAGCAATGAGAGCAGCATCTGTGATCTTGTCTGCCTTTAATGAGGTTTCTGGAAACATTAAAAAGTCTTGGTTTAGAAAAGATTAGAAATGAGGATGACATGCAATTCCCTTCCGAGTCATTGTTGTGGTCATGATGAACTTTTGGCTGAGAAACAAGTGCATGTAGGTCAATCAGAAAAGGAAAATAAGGATAAGATGGTGGTGGACTAAAGGTTCACTGATCTATGGCTAGTACTTGTATTGTCAATGAACAATTATCAGAGTCCATTACCGACTATTACATAGATAGTGTGATGATGCTTACACATGCCTTTATACTCTCTTTTCTTTTTATCTTCGAATATTTGTGCTAAATATTGTTCGTCTTGCAGGGAGTTGTTGATTGCAGATGCCAAATCAATGTTTATCTCACAAATTCCTCAATCATTGAAGGGCAGTCTTATTGAACGTTTAACATCATTTAGTCAAGGAACACCACCCTCCAGTACCTAAGCACACTTGGACATGGTATGTGCAGAAGCAGAATGGTCTTTTCAGGTTTTAAGGTGCACAAATCATGTGAATTACCCTTGAAAATTTTGCAGTCCATTGACGAAGGTGCTGATTTTCTTGGCCTGTATTCTTTGTCAGTTGGAGATGGAATGTCTGTTTGCGCAGACGATTATAAGTTGTCTTTGATTTTCTTCAGTCAGCTGTACTGTATCACCAAATGTGTTCATTCAGGTAAAAGAGGAAATCAAAGTGGCAACATCTTATTCCGGTAGACATATTTTCTTGAGAGGTAGGAGAGCCTATAGAAGCAGCGTAAATTCCTTTTGTGATGTATGATATATGCCCATTTTGCCGTAGTTTTTTAGCATGTAATCCTCATTTTATGGATGCTTACCAATTTTTTTCCATAAAATTGTGGTCGAGGTTGTATTGTTGAATCTGGAGATGAGGTTTCACTTTCGAACATACATACATTATAATACCATCCAT</genome_strand>
        <mrna_strand>AAATCACCAGATCAGTGCATCTTGCTTGAGTATGATGTTCAGTCTCGTGCAAAGGTGGAAGAATTAAAAAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCATCAGGAAGCTTCATCATTTCTAAGAACATGTGGTTGGTCAGAAGAAGTTTATGCTTTTATGCGTTCCAAAAAGTCGGGGACACAATCAAACTTTCAAGCATCAGATGTTAATGCGATGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGTTGATTGCAGATGCCAAATCAATGTTTATCTCACAAATTCCTCAATCATTGAAGGGCAGTCTTATTGAACGTTTAACATCATTTAGTCAAGGAACACCACCCTCCAGTACCTAAGCACACTTGGACATG.............................................................................TCCATTGACGAAGGTGCTGATTTTCTTGGCCTGTATTCTTTGTCAGTTGGAGATGGAATGTCTGTTTGCGCAGACGATTATAAGTTGTCTTTGATTTTCTTCAGTCAGCTGTACTGTATCACCAAATGTGTTCATTCAGGTAAAAGAGGAAATCAAAGTGGCAACATCTTATTCCGGTAGACATATTTTCTTGAGAGGTAGGAGAGCCTATAGAAGCAGCGTAAATTCCTTTTGTGATGTATGATATATGCCCATTTTGCCGTAGTTTTTTAGCATGTAATCCTCATTTTATGGATGCTTACCAATTTTTTTCCATAAAATTGTGGTCGAGGTTGTATTGTTGAATCTGGAGATGAGGTTTCACTTTCGAACATACATACATTATAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250137" ref_strand="+" ref_description="SGN-E250137 [cLEG-11-A9]">
      <seq>atttgaaaaatcttccttcaagagacctacctctggtaatatcaaaatggtttttcattcaaaagaatctggcaatagaactggtgatgtgagagcatcagttcttacagagaaaaagattacatcattatcaaacaagaatggtgttagcaaaagttgtggtaatggccaagggacaagatcacatgccttaacaaatggaaatggaaatggaaaacttccaattgtagcaaccagccctgtagcagacggtccccatgaagattatggtggaagtaatggaaaggctgcaggaaaggattcataccacaaagaggtgaatagatcatcatctttagcaaatggaaatggtaaaattcaaagtgttgcaacggataccttgaggggaagtctgcatagaaataatggggagaatagtgaaagcctggcagcaatatcttctgcatacagggatacatccaatggccatgttgaatcgtcttctatctcaggttcaaagagaaaatcaccagatcagtgcatcttgcttgagtatgatgttcagtctcgtgcaaaggtggaagaattaaaaaaagagctccatcaggaagcttcatcatttctaagaacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="80357" stop="78509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80057" g_stop="79482" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79481" i_stop="78846" i_length="636">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.416" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78845" g_stop="78809" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="613" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E250137" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80057" e_stop="79482"/>
          <exon e_start="78845" e_stop="78809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAAAAATCTTCCTTCAAGAGACCTACCTCTGGTAATATCAAAATGGTTTTTCATTCAAAAGAATCTGGCAATAGAACTGGTGATGTGAGAGCATCAGTTCTTACAGAGAAAAAGATTACATCATTATCAAACAAGAATGGTGTTAGCAAAAGTTGTGGTAATGGCCAAGGGACAAGATCACATGCCTTAACAAATGGAAATGGAAATGGAAAACTTCCAATTGTAGCAACCAGCCCTGTAGCAGACGGTCCCCATGAAGATTATGGTGGAAGTAATGGAAAGGCTGCAGGAAAGGATTCATACCACAAAGAGGTGAATAGATCATCATCTTTAGCAAATGGAAATGGTAAAATTCAAAGTGTTGCAACGGATACCTTGAGGGGAAGTCTGCATAGAAATAATGGGGAGAATAGTGAAAGCCTGGCAGCAATATCTTCTGCATACAGGGATACATCCAATGGCCATGTTGAATCGTCTTCTATCTCAGGTTCAAAGAGAAAATCACCAGATCAGTGCATCTTGCTTGAGTATGATGTTCAGTCTCGTGCAAAGGTGGAAGAATTAAAAAAAGAGTATGTTACTCTTTCTTTGATTACCTGCATTCCTTTGCCTTAGTATTATTTAAGTATTATTATAACACAGTGACAGAAGTTTTGAATTCATTATATTTGTCCTTGCATTTGCTAGAACTTGAGACTGTGGTTTGAAAATGCTAGGGGTTTCTTTTACGTATTTTGCTGCAAAGTAGCTTTAGCTGAATTTTGATCTTGCCTTTTACTGGGGTTCTCCTGATAACATAGGATGCAAATGCATTTTGCTTTTATTGTCATTTCTCTTAATTAGGGCCATATATTATATATCCTTAAGAATTAATAAACTGGGACCGCTCATCTCTATGATATTGGTTAACATATCTTATGTTGGCCTTACTAACAATGTACTGAGGAGTTCTGGGAAAGGAGGTTGAATAGGACTTTGACCCTAGCTGTTAAGTTCAGATTCTTACTGTTCTCAAGCTATACAATCGGGAAGCTCCCTTTTGCTGTCATCTCCTCTAGTGGTTAGAGATCATGAAGTGCTTTCTACTTCCAGTGTCCTGCTAAATAAACTTTTTTTATGAAACTGGCAACTAGCTAAATAAACAGTTCACAACTTTATCTTATATCCGCAACGTGATTATTTAACCCTATCTTTCGAATGAGTTTCAGGCTCCATCAGGAAGCTTCATCATTTCTAAGAACATGT</genome_strand>
        <mrna_strand>ATTTGAAAAATCTTCCTTCAAGAGACCTACCTCTGGTAATATCAAAATGGTTTTTCATTCAAAAGAATCTGGCAATAGAACTGGTGATGTGAGAGCATCAGTTCTTACAGAGAAAAAGATTACATCATTATCAAACAAGAATGGTGTTAGCAAAAGTTGTGGTAATGGCCAAGGGACAAGATCACATGCCTTAACAAATGGAAATGGAAATGGAAAACTTCCAATTGTAGCAACCAGCCCTGTAGCAGACGGTCCCCATGAAGATTATGGTGGAAGTAATGGAAAGGCTGCAGGAAAGGATTCATACCACAAAGAGGTGAATAGATCATCATCTTTAGCAAATGGAAATGGTAAAATTCAAAGTGTTGCAACGGATACCTTGAGGGGAAGTCTGCATAGAAATAATGGGGAGAATAGTGAAAGCCTGGCAGCAATATCTTCTGCATACAGGGATACATCCAATGGCCATGTTGAATCGTCTTCTATCTCAGGTTCAAAGAGAAAATCACCAGATCAGTGCATCTTGCTTGAGTATGATGTTCAGTCTCGTGCAAAGGTGGAAGAATTAAAAAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCATCAGGAAGCTTCATCATTTCTAAGAACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698381" ref_strand="+" ref_description="SGN-E698381 [FA06AE08]">
      <seq>ctaaggtcagtaaagtgcattccagcccagtgcgagatttgggcatatttgaaaaatcttccttcaagagacctacctctggtaatatcaaaatggtttttcattcaaaagaatctggcaatagaactggtgatgtgagagcatcagttcttacagagaaaaagattacatcattatcaaacaagaatggtgttagcaaaagctgtggtaatggccaagggacaagatcacatgccttaacaaatggaaatggaaatggaaaacttccaattgtagcaaccagccctgtagcagacggtccccatgaagattatggtggaagtaatggaaaggctgcaggaaaggattcataccacaaagaggtgaatagatcatcatctttagcaaatggaaatggtaaaattcaaagtgttgcaacggataccttgaggggaagtctgcatagaaataatggggagaatagtgaaagcctggcagcaatatcttctgcatacagggatacatccaatggccatgttgaatcgtcttctatctcaggttcaaagagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="80403" stop="79252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80103" g_stop="79552" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E698381" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80103" e_stop="79552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGGTCAGTAAAGTGCATTCGAGCCCAGTGCGAGATTTGGGCATATTTGAAAAATCTTCCTTCAAGAGACCTACCTCTGGTAATATCAAAATGGTTTTTCATTCAAAAGAATCTGGCAATAGAACTGGTGATGTGAGAGCATCAGTTCTTACAGAGAAAAAGATTACATCATTATCAAACAAGAATGGTGTTAGCAAAAGTTGTGGTAATGGCCAAGGGACAAGATCACATGCCTTAACAAATGGAAATGGAAATGGAAAACTTCCAATTGTAGCAACCAGCCCTGTAGCAGACGGTCCCCATGAAGATTATGGTGGAAGTAATGGAAAGGCTGCAGGAAAGGATTCATACCACAAAGAGGTGAATAGATCATCATCTTTAGCAAATGGAAATGGTAAAATTCAAAGTGTTGCAACGGATACCTTGAGGGGAAGTCTGCATAGAAATAATGGGGAGAATAGTGAAAGCCTGGCAGCAATATCTTCTGCATACAGGGATACATCCAATGGCCATGTTGAATCGTCTTCTATCTCAGGTTCAAAGAGAAAAT</genome_strand>
        <mrna_strand>CTAAGGTCAGTAAAGTGCATTCCAGCCCAGTGCGAGATTTGGGCATATTTGAAAAATCTTCCTTCAAGAGACCTACCTCTGGTAATATCAAAATGGTTTTTCATTCAAAAGAATCTGGCAATAGAACTGGTGATGTGAGAGCATCAGTTCTTACAGAGAAAAAGATTACATCATTATCAAACAAGAATGGTGTTAGCAAAAGCTGTGGTAATGGCCAAGGGACAAGATCACATGCCTTAACAAATGGAAATGGAAATGGAAAACTTCCAATTGTAGCAACCAGCCCTGTAGCAGACGGTCCCCATGAAGATTATGGTGGAAGTAATGGAAAGGCTGCAGGAAAGGATTCATACCACAAAGAGGTGAATAGATCATCATCTTTAGCAAATGGAAATGGTAAAATTCAAAGTGTTGCAACGGATACCTTGAGGGGAAGTCTGCATAGAAATAATGGGGAGAATAGTGAAAGCCTGGCAGCAATATCTTCTGCATACAGGGATACATCCAATGGCCATGTTGAATCGTCTTCTATCTCAGGTTCAAAGAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369218" ref_strand="+" ref_description="SGN-E369218 [TUS-23-O12]">
      <seq>gattctcaggtttctcctaaaatcttgcaagaagtgttgtcagaaaaggtgtacatccttttcttctctcgtaccaaacagaggtcaccatccaccaagacatgtttatcaattaatggatcaaaatccaatcactccaatggcttggctaaatccaaaatcttgaccagtgacttagcaaaaacagtaaacgaaaagcaagttttaggccacccctccgagaaagaaaatgtagtgatgtctaaggtcagtaaagtgcattcgagcccagtgcgagatttgggcatatttgaaaaatcttccttcaagagacctacctctggtaatatcaaaatggtttttcattcaaaagaatctggcaatagaactggtgatgtgagagcatcagttcttacagagaaaaagattacatcattatcaaacaagaatggtgttagcaaaagttgtggtaatggccaagggacaagatcacatgccttaacaaatggaaatggaaatggaaaacttccaattgtagcaaccagccctgtagcagacggtccccatgaagattatggtggaagtaatggaaaggctgcaggaaaggattcataccacaaagaggtgaatagatcatcatctttagcaaatggaaatggtaaaattcaaagtgttgcaacggataccttgaggggaagtctgcatagaaataatggggagaatagtgaaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="80644" stop="79333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80344" g_stop="79633" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E369218" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80344" e_stop="79633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTCAGGTTTCTCCTAAAATCTTGCAAGAAGTGTTGTCAGAAAAGGTGTACATCCTTTTCTTCTCTCGTACCAAACAGAGGTCACCATCCACCAAGACATGTTTATCAATTAATGGATCAAAATCCAATCACTCCAATGGCTTGGCTAAATCCAAAATCTTGACCAGTGACTTAGCAAAAACAGTAAACGAAAAGCAAGTTTTAGGCCACCCCTCCGAGAAAGAAAATGTAGTGATGTCTAAGGTCAGTAAAGTGCATTCGAGCCCAGTGCGAGATTTGGGCATATTTGAAAAATCTTCCTTCAAGAGACCTACCTCTGGTAATATCAAAATGGTTTTTCATTCAAAAGAATCTGGCAATAGAACTGGTGATGTGAGAGCATCAGTTCTTACAGAGAAAAAGATTACATCATTATCAAACAAGAATGGTGTTAGCAAAAGTTGTGGTAATGGCCAAGGGACAAGATCACATGCCTTAACAAATGGAAATGGAAATGGAAAACTTCCAATTGTAGCAACCAGCCCTGTAGCAGACGGTCCCCATGAAGATTATGGTGGAAGTAATGGAAAGGCTGCAGGAAAGGATTCATACCACAAAGAGGTGAATAGATCATCATCTTTAGCAAATGGAAATGGTAAAATTCAAAGTGTTGCAACGGATACCTTGAGGGGAAGTCTGCATAGAAATAATGGGGAGAATAGTGAAAGCC</genome_strand>
        <mrna_strand>GATTCTCAGGTTTCTCCTAAAATCTTGCAAGAAGTGTTGTCAGAAAAGGTGTACATCCTTTTCTTCTCTCGTACCAAACAGAGGTCACCATCCACCAAGACATGTTTATCAATTAATGGATCAAAATCCAATCACTCCAATGGCTTGGCTAAATCCAAAATCTTGACCAGTGACTTAGCAAAAACAGTAAACGAAAAGCAAGTTTTAGGCCACCCCTCCGAGAAAGAAAATGTAGTGATGTCTAAGGTCAGTAAAGTGCATTCGAGCCCAGTGCGAGATTTGGGCATATTTGAAAAATCTTCCTTCAAGAGACCTACCTCTGGTAATATCAAAATGGTTTTTCATTCAAAAGAATCTGGCAATAGAACTGGTGATGTGAGAGCATCAGTTCTTACAGAGAAAAAGATTACATCATTATCAAACAAGAATGGTGTTAGCAAAAGTTGTGGTAATGGCCAAGGGACAAGATCACATGCCTTAACAAATGGAAATGGAAATGGAAAACTTCCAATTGTAGCAACCAGCCCTGTAGCAGACGGTCCCCATGAAGATTATGGTGGAAGTAATGGAAAGGCTGCAGGAAAGGATTCATACCACAAAGAGGTGAATAGATCATCATCTTTAGCAAATGGAAATGGTAAAATTCAAAGTGTTGCAACGGATACCTTGAGGGGAAGTCTGCATAGAAATAATGGGGAGAATAGTGAAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246924" ref_strand="+" ref_description="SGN-E246924 [cLEF-41-F22]">
      <seq>gattctcaagtttctcctaaaatcttgcaagaagtgttgtcagaaaaggtgtacatccttttcttctctcgtaccaaacagaggtcaccatccaccaagacatgtttatcaattaatggatcaaaatccaatcactccaatggcttggctaaatccaaaatcttgaccagtgacttagcaaaaacagtaaacgaaaagcaagttttaggccacccctccgagaaagaaaatgtagtgatgtctaaggtcagtaaagtgcattcgagcccagtgcgagatttgggcatatttgaaaaatcttccttcaagagacctacctctggtaatatcaaaatggtttttcattcaaaagaatctggcaatagaactggtgatgtgagagcatcagttcttacagagaaaaagattacatcattatcaaacaagaatggtgttagcaaaagttgtggtaatggccaagggacaagatcacatgccttaacaaatggaaatggaaatggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="80644" stop="79540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80344" g_stop="79840" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E246924" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80344" e_stop="79840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTCAGGTTTCTCCTAAAATCTTGCAAGAAGTGTTGTCAGAAAAGGTGTACATCCTTTTCTTCTCTCGTACCAAACAGAGGTCACCATCCACCAAGACATGTTTATCAATTAATGGATCAAAATCCAATCACTCCAATGGCTTGGCTAAATCCAAAATCTTGACCAGTGACTTAGCAAAAACAGTAAACGAAAAGCAAGTTTTAGGCCACCCCTCCGAGAAAGAAAATGTAGTGATGTCTAAGGTCAGTAAAGTGCATTCGAGCCCAGTGCGAGATTTGGGCATATTTGAAAAATCTTCCTTCAAGAGACCTACCTCTGGTAATATCAAAATGGTTTTTCATTCAAAAGAATCTGGCAATAGAACTGGTGATGTGAGAGCATCAGTTCTTACAGAGAAAAAGATTACATCATTATCAAACAAGAATGGTGTTAGCAAAAGTTGTGGTAATGGCCAAGGGACAAGATCACATGCCTTAACAAATGGAAATGGAAATGGAAAAC</genome_strand>
        <mrna_strand>GATTCTCAAGTTTCTCCTAAAATCTTGCAAGAAGTGTTGTCAGAAAAGGTGTACATCCTTTTCTTCTCTCGTACCAAACAGAGGTCACCATCCACCAAGACATGTTTATCAATTAATGGATCAAAATCCAATCACTCCAATGGCTTGGCTAAATCCAAAATCTTGACCAGTGACTTAGCAAAAACAGTAAACGAAAAGCAAGTTTTAGGCCACCCCTCCGAGAAAGAAAATGTAGTGATGTCTAAGGTCAGTAAAGTGCATTCGAGCCCAGTGCGAGATTTGGGCATATTTGAAAAATCTTCCTTCAAGAGACCTACCTCTGGTAATATCAAAATGGTTTTTCATTCAAAAGAATCTGGCAATAGAACTGGTGATGTGAGAGCATCAGTTCTTACAGAGAAAAAGATTACATCATTATCAAACAAGAATGGTGTTAGCAAAAGTTGTGGTAATGGCCAAGGGACAAGATCACATGCCTTAACAAATGGAAATGGAAATGGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344842" ref_strand="+" ref_description="SGN-E344842 [cTOF-21-K6]">
      <seq>agtttgtgagggattcataaatggcggatccgcagagaaaatgggtgaccgacgatgtattaacatacgcatatcttctcctctacattgcactctctagtggtcagatcttcttcaacaagtgggttttgtcttcaaaagaagtaaactttccttatccccttggattgactctgcttcacatggtcttctcctcaattctatgttttatgcttaccaaggttctcaagataatgaaagttgaggaagggatgactctagatatatacattagttcggtcataccaattggtgcaatgtttgcaatgacactttggcttgggaacactgcctacctttatatttctgtttcatttgctcaaatgttgaaagcaatcagtaagtagtactgttattagctggcttatgtactgtagactatagaaggtaaaggtaaatacagctttaggatatgataggggagctgtcatgcgacacttcatgcttgatagatggctttagaggctcggccgatgaccatttgctcaagtacttttttaatttgtgccaagggcatcatctctctctcttttggtttcttctgcagtgccagtagcagttttcattctgggggttgcagccggacttgaaatgatgagctgcagaatgcttctcataatgtcagtaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="90502" stop="87156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90202" g_stop="90081" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90080" i_stop="88787" i_length="1294">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88786" g_stop="88679" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="230" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88678" i_stop="88601" i_length="78">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88600" g_stop="88566" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="265" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88565" i_stop="87860" i_length="706">
            <donor d_prob="0.864" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87859" g_stop="87456" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="669" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E344842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90202" e_stop="90081"/>
          <exon e_start="88786" e_stop="88679"/>
          <exon e_start="88600" e_stop="88566"/>
          <exon e_start="87859" e_stop="87456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGTGAGGGATTCATAAATGGCGGATCCGCAGAGAAAATGGGTGACCGACGATGTATTAACATACGCATATCTTCTCCTCTACATTGCACTCTCTAGTGGTCAGATCTTCTTCAACAAGGTAATCCCTTCTAATTAACCACGTAAATTTGCTTATAAATTAATTCGGATTCGTTGTCTATCCTGTGACTGTAATTGATACTGGAGTAATGCTTTGTGCCTTGGATATAATGGCAACTTTCGCCACTGCTTTCAATTTATAGTTGAATAGTTTCGTAATATATGTGTTTGTTGTTTGTGCTCATTTTGCATCCATAATAACAAGACAGTATTGATGGAGGAGTAGATAAATAAATTGTACATAGAGTTTCTTAAGGAAAATGCACGGGTTGAACCAACACTGTCCCGGTGCAGCGTCCGTTTACTTAAAATCATGGATCTGTCTTTGACAGTTGGAAGAAATGTCTCTTTCTATGAGTGATATACACGGAGCATACATTGTTGCAAAGTTGTGAAATTATGCCTTAAGGGTAGTGTCAGCGCTCATAAGGCCAATTGCACTTCAACCTGTCCGTAATTCTATCATTTATGTATTTTTCTGAGTTGTTATATAAGATAGGCTGAAAAATCAGGTAATCAAGTTAATGAACTGGTTTTTAGACATTTGAAGTCACAAAGGTGGAGTTCAATGATATAGAACTTCATATTACTTCATGGGAAGCAGTAGTATCTCATAAGTCTCATCAATTTGTTTGTTCCAAGTGTATTGTTTGTGCAAACATTTGATAAGCCTCATCAAATCATTGTTTGTTTGTTCCAAGTTTGTTTTTTGTGAAAACATTTTATAAATCTCATCAATTCATTAATTTGTTTGTTCTAAGTGTATTGATTGTGAAAACATTTTATCCCTTTAACCAGAAACTTAAGGTTGCATTATGTTTTTAATCAGTCAAATGTCTCTTGTACCAGTTTAAAGAAGTTACAGAAGTGTAAACACTAAAAAGATTCTTTTCTTCTAGTATTTCTTTTTGTGCTGTTGACTGTCTATATTTTGTTCATTTTACAACTTAGTTGAGAATTCATTTTAGAGATTGTTAAGTAAACATATAGAAGTGACATTCAATATACATAAGGAGTGATCTATTAGAATAAAAACTTACAGAATTTTGAGAACCTGCAACATCTTAGTCAAATAACTACCTATAAAATAATCTTTTGTTACTGTGTGAGAGAGAGAGGTTGGGATTTTCTTTTGAACTGATTTTATTTGATCATGGATTTCTGCTTCTTTGCTTATCTAGCTCTATTTTAAGTCAACTCTAGTTAACAATTGCAGCATTTTAAGACTAGTTCGCATCTCTGACGTGTTGTAGCTCCTTCAGACTTTATCTGACTTATAGTGACGTGTGTTGCAGTGGGTTTTGTCTTCAAAAGAAGTAAACTTTCCTTATCCCCTTGGATTGACTCTGCTTCACATGGTCTTCTCCTCAATTCTATGTTTTATGCTTACCAAGGTTCTCAAGGTAAATAATATTCCCTTTTTGTTTTTATTGGTTACATGAATGCCACCTTATAGTGCTAATTTAGGGGATTTCATGCAGATAATGAAAGTTGAGGAAGGGATGACTCTAGATATGTGAGTATTCAAGTGAAAAGAGTTTCATGTCAAATATTTATCTTATTATGGATATTGATTGGCTTCTACCAGAGGAATTATTTTCTTTCCTGACATTGTACTTAAGCTCATTTACTTGTTCCCAAGTTATATGTCTAGCTTTCTTTTTTCTTTTTTTTTTGATGTGACAGCGGGTTTCACTTTTGTATGAAATAATTATACCAAGTATTTTATCTCAAAAGAAATTACACAAGAATCCGCCTTTTTGAACCTAAAAAAAACTATTCCTTTTCATCAACTCTTAACAAAAATGTAAGTCAATTTGTAGCCTCCACGTGTTCTTATTAGAGTTGTTACATATTTAAGTTCTGACCTTAGAAATGTGCCAACTCAATTGTGACTAAAATGGAGTAATCAAATTAGGCTAAAAAAGGAGTTCAGCATGCTGGTTTTTACCAAATAATGAGAGAATCAAAAGTTAATGGTGAACTTCCTTATTTACCTATTTGTGTGAACTTGATCAAGATGTTGAAGAATCTTTCAGTGTGGGCTTCTCGTTATCTTTTATACGTGCATTCTAATTCATCCATGTAAGACAACTATTTGCTCTTGTTGTCATTTTTCTTCTTCTTGTTGTTCTTTTTTTGTGGTCCTCTTTTGTCAGATTTTCTCTTTCAATTGTTTCTGAAATTTCATTTATTCAAAATATTGTGGTTTCAAAATGCAGATACATTAGTTCGGTCATACCAATTGGTGCAATGTTTGCAATGACACTTTGGCTTGGGAACACTGCCTACCTTTATATTTCTGTTTCATTTGCTCAAATGTTGAAAGCAATCAGTAAGTAGTACTGTTATTAGCTGGCTTATGTACTGTAGACTATAGAAGGTAAAGGTAAATACAGCTTTAGGATATGATAGGGGAGCTGTCATGCGACACTTCATGCTTGATAGATGGCTTTAGAGGCTCGGCCGATGACCATTTGCTCAAGTACTTTTTTAATTTGTGCCAAGGGCATCATCTCTCTCTCTTTTGGTTTCTTCTGCAGTGCCAGTAGCAGTTTTCATTCTGGGGGTTGCAGCCGGACTTGAAATGATGAGCTGCAGAATGCTTCTCATAATGTCAGTAATC</genome_strand>
        <mrna_strand>AGTTTGTGAGGGATTCATAAATGGCGGATCCGCAGAGAAAATGGGTGACCGACGATGTATTAACATACGCATATCTTCTCCTCTACATTGCACTCTCTAGTGGTCAGATCTTCTTCAACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTTTGTCTTCAAAAGAAGTAAACTTTCCTTATCCCCTTGGATTGACTCTGCTTCACATGGTCTTCTCCTCAATTCTATGTTTTATGCTTACCAAGGTTCTCAAG..............................................................................ATAATGAAAGTTGAGGAAGGGATGACTCTAGATAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATTAGTTCGGTCATACCAATTGGTGCAATGTTTGCAATGACACTTTGGCTTGGGAACACTGCCTACCTTTATATTTCTGTTTCATTTGCTCAAATGTTGAAAGCAATCAGTAAGTAGTACTGTTATTAGCTGGCTTATGTACTGTAGACTATAGAAGGTAAAGGTAAATACAGCTTTAGGATATGATAGGGGAGCTGTCATGCGACACTTCATGCTTGATAGATGGCTTTAGAGGCTCGGCCGATGACCATTTGCTCAAGTACTTTTTTAATTTGTGCCAAGGGCATCATCTCTCTCTCTTTTGGTTTCTTCTGCAGTGCCAGTAGCAGTTTTCATTCTGGGGGTTGCAGCCGGACTTGAAATGATGAGCTGCAGAATGCTTCTCATAATGTCAGTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700140" ref_strand="+" ref_description="SGN-E700140 [FA12BA09]">
      <seq>ttcatccaccccatataatttttgtctttttattaattcctatttaattaatttcttgccccatttttgtcattattattattgttttcttttttctactattttagtagcaatttgttcactggttttcactaagcacaaagtgttctcaacacagcttgggagtccaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaagatgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92767" stop="96613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93067" g_stop="93237" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94122" i_length="885">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94123" g_stop="94293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="342" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="467" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="514" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="592" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="717" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="784" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="847" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E700140" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93067" e_stop="93237"/>
          <exon e_start="94123" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCCACCCCATATAATTTTTGTCTTTTTATTAATTCCTATTTAATTAATTTCTTGCCCCATTTTTGTCATTATTATTATTGTTTTCTTTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</genome_strand>
        <mrna_strand>TTCATCCACCCCATATAATTTTTGTCTTTTTATTAATTCCTATTTAATTAATTTCTTGCCCCATTTTTGTCATTATTATTATTGTTTTCTTTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340921" ref_strand="+" ref_description="SGN-E340921 [cTOF-5-O5]">
      <seq>taatttttgtctttttattaattcctatttaattaatttcttgccccatttttgtcattattattattgttttcttttttctactattttagtagcaatttgttcactggttttcactaagcacaaagtgttctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgngccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcgacgtagagaagctgatattaagacagaattcgtgttgccaccatttttgacattgaagaactttgaaggattggacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92782" stop="96439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93082" g_stop="93237" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="331" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="456" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="503" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="581" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="704" r_length="123" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96139" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="756" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E340921" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93082" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTTGTCTTTTTATTAATTCCTATTTAATTAATTTCTTGCCCCATTTTTGTCATTATTATTATTGTTTTCTTTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTT</genome_strand>
        <mrna_strand>TAATTTTTGTCTTTTTATTAATTCCTATTTAATTAATTTCTTGCCCCATTTTTGTCATTATTATTATTGTTTTCTTTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGNGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTG-AAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTC-GACGTAGAGAAGCTGATATTAAGACAGA................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738313" ref_strand="+" ref_description="SGN-E738313 [LC13AH02]">
      <seq>ctttttctactattttagtagcaatttgttcactggttttcactaagcacaaagtgttctcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92857" stop="94554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93156" g_stop="93237" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94254" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="224" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E738313" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93156" e_stop="93237"/>
          <exon e_start="94113" e_stop="94254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTG</genome_strand>
        <mrna_strand>CTTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740289" ref_strand="+" ref_description="SGN-E740289 [LC20DC12]">
      <seq>ctttttctactattttagtagcaatttgttcactggttttcactaagcacaaagtgttctcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92857" stop="94554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93156" g_stop="93237" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94254" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="224" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E740289" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93156" e_stop="93237"/>
          <exon e_start="94113" e_stop="94254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTG</genome_strand>
        <mrna_strand>CTTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735803" ref_strand="+" ref_description="SGN-E735803 [LC03AG06]">
      <seq>cgattttagtagcaatttgttcactggttttcactaagcacaaagtgttctcaacacagcttgggagtccaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaaaaactttgacggattggaccttggcaagatggacccaacctatgactctggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92865" stop="96454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93165" g_stop="93237" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94122" i_length="885">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94123" g_stop="94293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="244" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="369" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="416" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="494" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="619" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="686" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96263" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="703" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E735803" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93165" e_stop="93237"/>
          <exon e_start="94123" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTT</genome_strand>
        <mrna_strand>CGATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAAAACTTTGACGGATTGGACCTTGGCAAGATGGACCCA............................................................................................ACCTATGACTCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287257" ref_strand="+" ref_description="SGN-E287257 [cLES-15-I9]">
      <seq>tttagtagcaatttgttcactggttttcactaagcacaaagtgttctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92869" stop="96199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93169" g_stop="93237" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="244" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="369" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="416" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="494" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95899" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="543" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E287257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93169" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAA</genome_strand>
        <mrna_strand>TTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745934" ref_strand="+" ref_description="SGN-E745934 [GI|47105468]">
      <seq>ggtagcaatttgttcactggttttcactaagcacaaagtgttctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttgcggttatgttaagcttttcatggtattggaaaactgatatattctggtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92873" stop="97884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93172" g_stop="93237" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="241" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="366" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="413" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="491" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="616" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="683" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="746" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="816" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="917" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="918" r_stop="1022" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="97236" g_stop="97586" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1023" r_stop="1373" r_length="351" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1374" polyA_stop="1386"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E745934" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1373</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93172" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATG</genome_strand>
        <mrna_strand>GGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTGCGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731095" ref_strand="+" ref_description="SGN-E731095 [LA26AE04]">
      <seq>caatttgttcactggttttcactaagcacaaagtgttctcaacacagcttgggagtccaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92877" stop="97157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93177" g_stop="93237" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94122" i_length="885">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94123" g_stop="94293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="232" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="357" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="404" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="482" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="607" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="674" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="737" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="807" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="96833" g_stop="96857" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="832" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E731095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93177" e_stop="93237"/>
          <exon e_start="94123" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGC</genome_strand>
        <mrna_strand>CAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348015" ref_strand="+" ref_description="SGN-E348015 [cTOF-31-K7]">
      <seq>tttgttcactggttttcactaagcacaaagtgttctcaacacagcttgggagtccaagtgctaattttgtgtagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctntatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaaactttgaagattggaccttggcaagatggaccaagctaatgactctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92880" stop="96464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93180" g_stop="93237" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94096" i_length="859">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.626" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94097" g_stop="94293" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="255" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="380" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="427" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="505" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="630" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="697" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96261" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="712" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E348015" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93180" e_stop="93237"/>
          <exon e_start="94097" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAG-AACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGC</genome_strand>
        <mrna_strand>TTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTNTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAAACTTTGAA-GATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296761" ref_strand="+" ref_description="SGN-E296761 [cLET-26-E19]">
      <seq>ttttcactaagcacaaagtgttctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92892" stop="96464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93192" g_stop="93237" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="221" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="346" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="393" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="471" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="596" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="663" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96262" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="679" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E296761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93192" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCT</genome_strand>
        <mrna_strand>TTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279346" ref_strand="-" ref_description="SGN-E279346 [cLEL-4-H6](-)">
      <seq>gcacgagcaaagtgttctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaagnngagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92900" stop="95241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93198" g_stop="93237" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="215" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="340" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="387" r_length="47" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E279346" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279346" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93198" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</genome_strand>
        <mrna_strand>GCACGAGCAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................NNGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724134" ref_strand="+" ref_description="SGN-E724134 [FC23AF09]">
      <seq>gaagcacaaagtgttctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggagtcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92900" stop="97219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93199" g_stop="93237" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="214" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="339" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="386" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="464" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="589" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="656" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="719" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="789" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="96833" g_stop="96919" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="876" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E724134" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93199" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCT</genome_strand>
        <mrna_strand>GAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGAGTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739596" ref_strand="+" ref_description="SGN-E739596 [LC18AC12]">
      <seq>gcataaagtgttctcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacngctgaggatgctaggcttgcagttcnagctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92902" stop="97228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93202" g_stop="93237" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="217" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="342" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="389" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="467" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="592" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="659" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="722" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="792" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="96833" g_stop="96928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="888" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E739596" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93202" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTG</genome_strand>
        <mrna_strand>GCATAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACNGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCNAGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731748" ref_strand="+" ref_description="SGN-E731748 [LA28AC10]">
      <seq>cacaaagtgttctcacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92903" stop="97177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93203" g_stop="93237" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="215" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="340" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="387" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="465" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="590" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="657" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="720" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="790" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="96833" g_stop="96877" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="835" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E731748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93203" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAA</genome_strand>
        <mrna_strand>CACAAAGTGTTCTC-ACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296893" ref_strand="+" ref_description="SGN-E296893 [cLET-26-I7]">
      <seq>cgagactagttctctccacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92906" stop="96052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93203" g_stop="93237" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.771"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="210" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="335" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="382" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95752" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="449" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E296893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93203" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCT</genome_strand>
        <mrna_strand>CGAGACTAGTTCTCTCCACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247931" ref_strand="+" ref_description="SGN-E247931 [cLEF-47-D2]">
      <seq>caaagtgttctcaacacagcttgggagtccaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92905" stop="95241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93205" g_stop="93237" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94122" i_length="885">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94123" g_stop="94293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="204" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="329" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="376" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E247931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93205" e_stop="93237"/>
          <exon e_start="94123" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</genome_strand>
        <mrna_strand>CAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279353" ref_strand="-" ref_description="SGN-E279353 [cLEL-4-J8](-)">
      <seq>gcacgagtctcaacacagcttgggagtccaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92907" stop="95213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93205" g_stop="93237" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94122" i_length="885">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94123" g_stop="94293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="203" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="328" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94913" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="347" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E279353" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279353" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93205" e_stop="93237"/>
          <exon e_start="94123" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAG</genome_strand>
        <mrna_strand>GCACGAG-TCTCAACACAGCTTGGGAGTCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277720" ref_strand="-" ref_description="SGN-E277720 [cLEL-5-C10](-)">
      <seq>gcacgagctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtccccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92914" stop="95241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93207" g_stop="93237" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.806"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.740" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="206" r_length="175" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="331" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="378" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E277720" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277720" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93207" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</genome_strand>
        <mrna_strand>GCACGAGCTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTCCCCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333090" ref_strand="+" ref_description="SGN-E333090 [cTOD-19-M16]">
      <seq>gtgttctcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaagggagtatgctaccagcagagcagcatcagcagcaggcacaatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92909" stop="95241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93209" g_stop="93237" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="210" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="335" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="382" r_length="47" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E333090" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93209" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</genome_strand>
        <mrna_strand>GTGTTCTCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAA........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACCAGCAGAGCAGCATCAGCAGCAGGCACAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340201" ref_strand="+" ref_description="SGN-E340201 [cTOF-2-M4]">
      <seq>tgttctcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggncagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92910" stop="96606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93210" g_stop="93237" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="209" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="334" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="381" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="459" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="584" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="651" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96306" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="711" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E340201" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93210" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGG</genome_strand>
        <mrna_strand>TGTTCTCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGNCAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279842" ref_strand="+" ref_description="SGN-E279842 [cLER-8-J9]">
      <seq>tgttctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92910" stop="95241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93210" g_stop="93237" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="203" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="328" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="375" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E279842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93210" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</genome_strand>
        <mrna_strand>TGTTCTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728307" ref_strand="+" ref_description="SGN-E728307 [LA17BE11]">
      <seq>gctctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaangatgttcagtggctccagactatcacttncatgccaatcctggtgaagggtgtaattacggctgangatgctangcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92911" stop="97188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93211" g_stop="93237" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="202" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="327" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="374" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="452" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="577" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="644" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="707" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="777" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="96833" g_stop="96888" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="833" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E728307" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93211" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCT</genome_strand>
        <mrna_strand>GCTCTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAN................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTNCATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGANGATG.....................................................................................................CTANGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348597" ref_strand="+" ref_description="SGN-E348597 [cTOF-30-O13]">
      <seq>ttctcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92912" stop="96606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93212" g_stop="93237" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="207" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="332" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="379" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="457" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="582" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="649" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96306" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="709" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E348597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93212" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGG</genome_strand>
        <mrna_strand>TTCTCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339369" ref_strand="+" ref_description="SGN-E339369 [cTOF-4-G5]">
      <seq>ttctcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaaagactttgaaagattggaccttggcaagatggaccaagctaatgactctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92912" stop="96464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93212" g_stop="93237" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="207" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="332" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="379" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="457" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="582" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="649" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96261" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="664" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E339369" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93212" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGC</genome_strand>
        <mrna_strand>TTCTCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAAGACTTTGAAAGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289781" ref_strand="+" ref_description="SGN-E289781 [cLET-9-E10]">
      <seq>ttctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92912" stop="95241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93212" g_stop="93237" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="201" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="326" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="373" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E289781" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93212" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</genome_strand>
        <mrna_strand>TTCTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371039" ref_strand="+" ref_description="SGN-E371039 [TUS-29-D1](-)">
      <seq>ctcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92914" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93214" g_stop="93237" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94159" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="71" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94160" i_stop="97097" i_length="2938">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97098" g_stop="97156" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="130" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97236" g_stop="97604" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="499" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E371039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93214" e_stop="93237"/>
          <exon e_start="94113" e_stop="94159"/>
          <exon e_start="97098" e_stop="97156"/>
          <exon e_start="97236" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>CTCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366905" ref_strand="+" ref_description="SGN-E366905 [cLPT-6-G11]">
      <seq>ctcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaataactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcttgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctgggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92914" stop="96425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93214" g_stop="93237" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="206" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="331" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="378" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="456" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="581" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96125" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="619" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E366905" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93214" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAAT-ACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTG</genome_strand>
        <mrna_strand>CTCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATAACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCTTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTGGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292375" ref_strand="+" ref_description="SGN-E292375 [cLET-1-B5]">
      <seq>ctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92914" stop="96252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93214" g_stop="93237" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="199" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="324" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="371" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="449" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95952" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="551" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E292375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93214" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGT</genome_strand>
        <mrna_strand>CTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293524" ref_strand="+" ref_description="SGN-E293524 [cLET-15-N14]">
      <seq>ctcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92914" stop="96065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93214" g_stop="93237" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="199" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="324" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="371" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="449" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E293524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93214" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT</genome_strand>
        <mrna_strand>CTCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297328" ref_strand="+" ref_description="SGN-E297328 [cLET-29-N12]">
      <seq>ctcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92914" stop="94804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93214" g_stop="93237" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="205" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94504" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="316" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E297328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93214" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAAT</genome_strand>
        <mrna_strand>CTCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371040" ref_strand="+" ref_description="SGN-E371040 [TUS-29-D1]">
      <seq>tcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92915" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93215" g_stop="93237" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94159" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="70" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94160" i_stop="97097" i_length="2938">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97098" g_stop="97156" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="129" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97236" g_stop="97604" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="498" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E371040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93215" e_stop="93237"/>
          <exon e_start="94113" e_stop="94159"/>
          <exon e_start="97098" e_stop="97156"/>
          <exon e_start="97236" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>TCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280417" ref_strand="+" ref_description="SGN-E280417 [cLER-1-B4]">
      <seq>tcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggctatgttaagcttttcatggtattggaaaactgatatattctgataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92915" stop="97885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93215" g_stop="93237" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94159" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="70" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94160" i_stop="97097" i_length="2938">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97098" g_stop="97156" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="129" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97236" g_stop="97585" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="479" r_length="350" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E280417" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93215" e_stop="93237"/>
          <exon e_start="94113" e_stop="94159"/>
          <exon e_start="97098" e_stop="97156"/>
          <exon e_start="97236" e_stop="97585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAAT</genome_strand>
        <mrna_strand>TCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGCTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291948" ref_strand="+" ref_description="SGN-E291948 [cLET-7-C4]">
      <seq>tcaacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccattggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92915" stop="96580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93215" g_stop="93237" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="198" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="323" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="370" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="448" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="573" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="640" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96280" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="674" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E291948" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93215" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTG</genome_strand>
        <mrna_strand>TCAACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCATTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340451" ref_strand="+" ref_description="SGN-E340451 [cTOF-1-C18]">
      <seq>tcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92915" stop="96415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93215" g_stop="93237" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="204" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="329" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="376" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="454" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="579" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96115" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="607" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E340451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93215" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTG</genome_strand>
        <mrna_strand>TCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341304" ref_strand="+" ref_description="SGN-E341304 [cTOE-22-N3]">
      <seq>tcaacacagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92915" stop="96252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93215" g_stop="93237" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="204" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="329" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="376" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="454" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95952" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="556" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E341304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93215" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGT</genome_strand>
        <mrna_strand>TCAACACAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314782" ref_strand="+" ref_description="SGN-E314782 [cTOA-20-D9]">
      <seq>aacacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92917" stop="94587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93217" g_stop="93237" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94287" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="190" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E314782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93217" e_stop="93237"/>
          <exon e_start="94119" e_stop="94287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAG</genome_strand>
        <mrna_strand>AACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343499" ref_strand="+" ref_description="SGN-E343499 [cTOF-19-M21]">
      <seq>acacagcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92918" stop="97005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93218" g_stop="93237" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="195" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="320" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="367" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="445" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="570" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="637" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="700" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96662" g_stop="96705" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="744" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E343499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93218" e_stop="93237"/>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGT</genome_strand>
        <mrna_strand>ACACAGCTTGGGAGTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203074" ref_strand="+" ref_description="SGN-E203074 [cLEB-3-D17]">
      <seq>gcacgagcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgtgccactttcagcgttgatgaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagcccttacagttgataccccaaggctcggacgtagagaagctgatattaagaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92919" stop="96275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93218" g_stop="93237" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="202" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="327" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="374" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="452" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="577" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E203074" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93218" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAC-AGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG</genome_strand>
        <mrna_strand>GCACGAGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGTGCCACTTTCAGCGTTGATGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTTACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365486" ref_strand="+" ref_description="SGN-E365486 [cLPT-2-N23]">
      <seq>acagcttgggagtccaagtttggaaggggagcgtgaaataactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcttgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttctttcagctttatgtctacaaagacagaaatgttgttgctcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92920" stop="96182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93220" g_stop="93237" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94122" i_length="885">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94123" g_stop="94293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="190" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="315" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="362" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="440" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95882" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="472" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E365486" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93220" e_stop="93237"/>
          <exon e_start="94123" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAAT-ACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACT</genome_strand>
        <mrna_strand>ACAGCTTGGGAGTCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGGGGAGCGTGAAATAACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCTTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTTCAGCTTTAT.......................................................................................GTCTACAAAGACAGAAATGTTGTTGCTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333665" ref_strand="+" ref_description="SGN-E333665 [cTOD-22-J14]">
      <seq>agcttgggagtccaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatggccatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92922" stop="96647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93222" g_stop="93237" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94122" i_length="885">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94123" g_stop="94293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="187" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="312" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="359" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="437" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="562" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="629" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="692" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E333665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93222" e_stop="93237"/>
          <exon e_start="94123" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</genome_strand>
        <mrna_strand>AGCTTGGGAGTCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284886" ref_strand="+" ref_description="SGN-E284886 [cLER-19-H21]">
      <seq>agcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92922" stop="96419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93222" g_stop="93237" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="197" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="322" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="369" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="447" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="572" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96088" g_stop="96119" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="604" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E284886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93222" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGA</genome_strand>
        <mrna_strand>AGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300570" ref_strand="+" ref_description="SGN-E300570 [cLET-45-C22]">
      <seq>agcttgggagtccaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92922" stop="96242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93222" g_stop="93237" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94122" i_length="885">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94123" g_stop="94293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="187" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="312" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="359" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="437" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95942" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="529" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E300570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93222" e_stop="93237"/>
          <exon e_start="94123" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAG</genome_strand>
        <mrna_strand>AGCTTGGGAGTCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301338" ref_strand="+" ref_description="SGN-E301338 [cLEW-24-E2]">
      <seq>agcttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaagccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaagggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaagacctggcatccgtttcttccagctctatgtctacaaagacagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="92922" stop="96065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93222" g_stop="93237" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="197" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="322" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="369" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="447" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95851" g_stop="95869" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="466" r_length="19" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E301338" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93222" e_stop="93237"/>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTGGGAGTCCAAGGTCTGTTCTTAACTTCTCTTACACTTTTTTTGTAAAGGTTTTAATTTACTTTCAAGAATCTTGTTTGTTTGAGTCTTATTAGATGATATAGTTCTCTGTTTACTGCATGCATGTATGATGTTTTTTCTACTTTTTTGATTCATTTTTCATGGGGTTTGTTCTGTTTCTGCCAAGCTTAGTTTCTTTATTTGTGTTCTTGTTTATTGTTTCTTGATCAAACATGTTATCACAGGTTCGAGTTGTGAAAGTAGCTACTTATGCTTGCATTAAGTTAATTAACGTGGGATGCTTTGTGCACCGAACTGTTTTGTTTTTTGTTTTTATCAAATTTCTTGTATCATTTAGTCTCATAGGGAAGCTATCGTTGTTTTTACATTTATGATGCATACTGGTTCTTCACTAATCATGACGAAAACTTCATCTTGGAAAATATTTTACACGATGAAGTCATTTTTTGCTGTTTGATTGACAGAGGAAACTGTTTTTCAGCAAGGGTTCGATGACTTATAGGTGGAAGTTATCTACTTTTATAAGTATCGATTCCAGCTCCAATTACTTCGTAAAACTTGTTTTGACTAACTTTTGGACATTATAGGTAGAAATCATTCAGTCTCAGAGAGAATTTGTTGTTTATCTAAGTTGTTTTTCACATGTTTGATGTATACTTCTTTATCTTCACTAATTAAGGCGTATTTTGTATGACGAGAACATTTTCTTGAAGAACTTTATGGTACTTAGTTTATACCCAATCAAGTACTAGAAAATGATGTAGATGAAGTTTCTTTGAGTAAAATATTTTCCTTGGTTGCTGTCATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATG</genome_strand>
        <mrna_strand>AGCTTGGGAGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAAGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAA........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAAGACCTGGCATCCGTTTCTTCCAGCTCTAT.......................................................................................GTCTACAAAGACAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366710" ref_strand="+" ref_description="SGN-E366710 [cLPT-17-E6]">
      <seq>ttgggagtccaagtaatatgtatcttcaagaaggcttgtcaacagtgctaattttgtgtagcgtcaggaagtttggaaggggagcgtgaaataactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcttgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93755" stop="96051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94051" g_stop="94293" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="368" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="415" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95751" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="481" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E366710" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94051" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAAT-ACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTC</genome_strand>
        <mrna_strand>TTGGGAGTCCA-AGTAATATGTATCTTCAAGAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATAACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCTTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367248" ref_strand="+" ref_description="SGN-E367248 [cLPT-5-I18]">
      <seq>ttgggagtccaaggaagtttggaaggggagcgtgaaataactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcttgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93812" stop="96238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94105" g_stop="94293" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="314" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="361" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="439" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95938" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="527" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E367248" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94105" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAAT-ACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCC</genome_strand>
        <mrna_strand>TTGGG-AGTCCAAGGAAGTTTGGAAGGGGAGCGTGAAATAACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCTTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378392" ref_strand="+" ref_description="SGN-E378392 [TUS-29-D1]">
      <seq>tcaacacaacttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93811" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94113" g_stop="94159" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="70" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94160" i_stop="97097" i_length="2938">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97098" g_stop="97156" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="129" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97236" g_stop="97604" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="498" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E378392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94113" e_stop="94159"/>
          <exon e_start="97098" e_stop="97156"/>
          <exon e_start="97236" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292409" ref_strand="+" ref_description="SGN-E292409 [cLET-1-L21]">
      <seq>gggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttatggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93811" stop="96464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="192" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="317" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="364" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="442" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="567" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="634" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96261" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="649" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E292409" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGC</genome_strand>
        <mrna_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTATGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294559" ref_strand="+" ref_description="SGN-E294559 [cLET-22-O2]">
      <seq>agtccaagcgtcaggaagtttggaatgggagcgtgaaatactgctgaagatggaggaagtaaccaatgttacggagtatcaagagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgagccacttccaacgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaagggctataacccttacagttgataccccaaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93811" stop="96246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="189" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="314" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="361" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="439" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95946" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="536" r_length="97" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E294559" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAA-GGCTATAGCCCTCACAGTTGATACCCCAAGGCTC</genome_strand>
        <mrna_strand>CGTCAGGAAGTTTGGAATGGGAGCGTGAAATACTGCTGAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAAGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGAGCCACTTCCAACGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGGCTATAACCCTTACAGTTGATACCCCAAGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290082" ref_strand="+" ref_description="SGN-E290082 [cLET-5-B15]">
      <seq>ctcaacacagtttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttatgccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcacaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttgcagcgttgaggaggttgcttcaacaagacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgctgctcaacttgtgaggagagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93811" stop="96197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="205" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="330" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="377" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="455" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95897" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="502" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E290082" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGA</genome_strand>
        <mrna_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTATGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCACAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTGCAGCGTTGAGGAGGTTGCTTCAACAAGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGCTGCTCAACTTGTGAGGAGAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291321" ref_strand="+" ref_description="SGN-E291321 [cLET-2-E16]">
      <seq>agtccaagcgtcaggaagtttgtaaggggagcgtgatattctgttcaagatgtaggaattaagcaatgttacggagtatcaggagatcgccaagaataagttgccaaagatgggttatgactactatgccttgatagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93811" stop="96168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="189" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="314" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="361" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="439" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95868" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="457" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E291321" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAAT</genome_strand>
        <mrna_strand>CGTCAGGAAGTTTGTAAGGGGAGCGTGATATTCTGTTCAAGATGTAGGAATTAAGCAATGTTACGGAGTATCAGGAGATCGCCAAGAATAAGTTGCCAAAGATGGGTTATGACTACTATGCCTTGATAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301263" ref_strand="+" ref_description="SGN-E301263 [cLEW-24-F17]">
      <seq>agcttgggagttctagcgtcaggaagtttggaaggggagcgtgagatactgctaaagagggaggaagtaaccaatgttacggagtatcaagagatcgccaagaaaaagttgcctaagatggtttatgactactatgcctagggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaagggagtatgctacatcaagagcagcatcaccagcaagcacaatcatgacattgtcatcctgggccacttccagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93808" stop="96014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="197" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="322" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="369" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95714" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="398" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E301263" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGT</genome_strand>
        <mrna_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAGATACTGCTAAAGAGGGAGGAAGTAACCAATGTTACGGAGTATCAAGAGATCGCCAAGAAAAAGTTGCCTAAGATGGTTTATGACTACTATGCCTAGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAA........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACATCAAGAGCAGCATCACCAGCAAGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283059" ref_strand="+" ref_description="SGN-E283059 [cLER-17-D12]">
      <seq>ttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93811" stop="96004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="194" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="319" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="366" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95704" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="385" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E283059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCA</genome_strand>
        <mrna_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282596" ref_strand="+" ref_description="SGN-E282596 [cLER-15-E5]">
      <seq>ttgggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93811" stop="95241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="194" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="319" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="366" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E282596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</genome_strand>
        <mrna_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283063" ref_strand="+" ref_description="SGN-E283063 [cLER-17-F14]">
      <seq>gggagtccaagcgtcaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93811" stop="95241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94113" g_stop="94293" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="192" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="317" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="364" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E283063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94113" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</genome_strand>
        <mrna_strand>CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296458" ref_strand="-" ref_description="SGN-E296458 [cLET-19-F21](-)">
      <seq>caggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93816" stop="96646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94116" g_stop="94293" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="303" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="350" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="428" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="553" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="620" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="683" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E296458" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296458" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94116" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</genome_strand>
        <mrna_strand>CAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296317" ref_strand="+" ref_description="SGN-E296317 [cLET-19-F21]">
      <seq>caggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93816" stop="96646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94116" g_stop="94293" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="303" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="350" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="428" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="553" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="620" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="683" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E296317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94116" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</genome_strand>
        <mrna_strand>CAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726954" ref_strand="+" ref_description="SGN-E726954 [LA13BC03]">
      <seq>ggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtncctgcaacaatctcggctcttgaagaagttgtgaaaggtgcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93818" stop="97370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94118" g_stop="94293" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="301" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="348" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="426" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="551" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="618" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="681" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="751" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="852" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97052" g_stop="97070" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="871" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E726954" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94118" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAG</genome_strand>
        <mrna_strand>GGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTNCCTGCAACAATCTCGGCTCTTGAAGAA......................................................................................................................GTTGTGAAAGGTGCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726141" ref_strand="+" ref_description="SGN-E726141 [LA10BG07]">
      <seq>ggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93818" stop="96195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94118" g_stop="94293" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="301" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="348" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="426" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95895" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="471" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E726141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94118" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCT</genome_strand>
        <mrna_strand>GGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739760" ref_strand="+" ref_description="SGN-E739760 [LC18DA04]">
      <seq>cacatcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaagtgcacaaggcaggatccccgtattcttggatggaggtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93812" stop="97402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="194" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="319" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="366" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="444" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="569" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="636" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="699" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="769" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="870" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97052" g_stop="97102" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="921" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E739760" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTC</genome_strand>
        <mrna_strand>GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAAGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731929" ref_strand="+" ref_description="SGN-E731929 [LA28CD07]">
      <seq>cgcttgagagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccggtgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaagctggaacagctggtatcattgtgtcaaaccatggtgctcgccagctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93808" stop="97199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="191" r_length="175" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="316" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="363" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="441" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="566" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="633" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="696" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="766" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96833" g_stop="96899" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="833" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E731929" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGA</genome_strand>
        <mrna_strand>GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCGGTGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAAGCTGGAACAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728914" ref_strand="+" ref_description="SGN-E728914 [LA19BE05]">
      <seq>gctttgggagtccaaggaagtttgctaaggggagcgtgaaatactgctaatgatggaggaagtaacccatgttaccgagtatcatgagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgagagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcaatggctccagactatcacttcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93828" stop="96642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="192" r_length="176" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="317" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="364" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="442" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="567" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="634" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="697" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E728914" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTG-GAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</genome_strand>
        <mrna_strand>GAAGTTTGCTAAGGGGAGCGTGAAATACTGCTAATGATGGAGGAAGTAACCCATGTTACCGAGTATCATGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGAGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371340" ref_strand="+" ref_description="SGN-E371340 [TUS-27-C19]">
      <seq>ttgggagtccaagtttggaaggggagcgtgaaatactggtaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctggggagctgaggaccagtggactctggctgagaacaaaaacgccttatcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93820" stop="96613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="184" r_length="175" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="309" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="356" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="434" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="559" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="626" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="689" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E371340" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</genome_strand>
        <mrna_strand>CAAGTTTGGAAGGGGAGCGTGAAATACTGGTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTGGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAAAAACGCCTTATCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333695" ref_strand="+" ref_description="SGN-E333695 [cTOD-22-E9]">
      <seq>agcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggacnncagctatgactctggcttagcttcgtatggtgctggtcaaattgatcgcactttgagctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93812" stop="96608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="191" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="316" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="363" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="441" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="566" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="634" r_length="68" r_score="0.940"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96308" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="695" r_length="61" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E333695" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCA-AGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAA</genome_strand>
        <mrna_strand>GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACNNCA............................................................................................GCT-ATGACTCTGGCTTAGCTTCGTATGGTGCTGGTCAAATTGATCGCACTTTGAGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290654" ref_strand="+" ref_description="SGN-E290654 [cLET-10-E3]">
      <seq>agcttgggagtccaaggaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93812" stop="96416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="191" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="316" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="363" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="441" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="566" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96116" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="595" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E290654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGA</genome_strand>
        <mrna_strand>GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366301" ref_strand="+" ref_description="SGN-E366301 [cLPT-1-A3]">
      <seq>acagcttgggagtccaaggaagtttggaaggggagcgtgaaataactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcttgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttacagctttatgtctacaaggacagaaatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93812" stop="96172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="194" r_length="176" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="319" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="366" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="444" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95872" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="466" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E366301" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGGAAGGGGAGCGTGAAAT-ACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTG</genome_strand>
        <mrna_strand>GAAGTTTGGAAGGGGAGCGTGAAATAACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCTTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTACAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282512" ref_strand="+" ref_description="SGN-E282512 [cLER-18-M6]">
      <seq>ttgggagtccaagtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93820" stop="96169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="184" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="309" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="356" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="434" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95869" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="453" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E282512" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATG</genome_strand>
        <mrna_strand>CAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297275" ref_strand="+" ref_description="SGN-E297275 [cLET-29-G8]">
      <seq>agcttgggagtccaaggaagtttggtaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaaccccttctcaagaattctgtttaggccccgcattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93812" stop="94803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94119" g_stop="94293" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="192" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94503" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="302" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E297275" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94119" e_stop="94293"/>
          <exon e_start="94394" e_stop="94503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGG-AAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAA</genome_strand>
        <mrna_strand>GAAGTTTGGTAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACCCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGCATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292977" ref_strand="+" ref_description="SGN-E292977 [cLET-12-O9]">
      <seq>gtttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcataaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93822" stop="96169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94122" g_stop="94293" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="297" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="344" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="422" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95869" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="441" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E292977" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94122" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATG</genome_strand>
        <mrna_strand>GTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCATAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346668" ref_strand="+" ref_description="SGN-E346668 [cTOF-28-M23]">
      <seq>tttggaaggggatcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacgatttcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93823" stop="96464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94123" g_stop="94293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="296" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="343" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="421" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="546" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="613" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96261" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="628" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E346668" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94123" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGC</genome_strand>
        <mrna_strand>TTTGGAAGGGGATCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACGA................................................................................................................TTTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286272" ref_strand="+" ref_description="SGN-E286272 [cLES-11-D20]">
      <seq>tttggaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggcttcgacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93823" stop="96415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94123" g_stop="94293" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="296" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="343" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="421" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="546" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96115" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="574" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E286272" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94123" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTG</genome_strand>
        <mrna_strand>TTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTTCGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283603" ref_strand="+" ref_description="SGN-E283603 [cLES-1-G17]">
      <seq>ttggaaggggatcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93824" stop="96199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94124" g_stop="94293" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="295" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="342" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="420" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95899" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="469" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E283603" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94124" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAA</genome_strand>
        <mrna_strand>TTGGAAGGGGATCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294572" ref_strand="+" ref_description="SGN-E294572 [cLET-22-D21]">
      <seq>gaaggggagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaagacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93827" stop="96172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94127" g_stop="94293" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="292" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="339" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="417" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95872" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="439" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E294572" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94127" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTG</genome_strand>
        <mrna_strand>GAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAAGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342427" ref_strand="+" ref_description="SGN-E342427 [cTOF-8-O21]">
      <seq>gagcgtgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtgttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctggttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagctacgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93833" stop="97007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94133" g_stop="94293" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="287" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="334" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="412" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="537" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="604" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="667" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96662" g_stop="96707" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="713" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E342427" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94133" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGT-TTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGA</genome_strand>
        <mrna_strand>GAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTGTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GGTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTACGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283297" ref_strand="+" ref_description="SGN-E283297 [cLER-12-D17]">
      <seq>tgaaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93838" stop="96264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94138" g_stop="94293" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="281" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="328" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="406" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95964" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="520" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E283297" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94138" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGAT</genome_strand>
        <mrna_strand>TGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297312" ref_strand="+" ref_description="SGN-E297312 [cLET-29-D16]">
      <seq>aaatactgctaaagatggaggaagtaaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93840" stop="96412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94140" g_stop="94293" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="279" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="326" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="404" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="529" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96112" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="554" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E297312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94140" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACA</genome_strand>
        <mrna_strand>AAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248096" ref_strand="+" ref_description="SGN-E248096 [cLEF-47-B18]">
      <seq>aagtaaccaatgttacggagtatcatgagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggcccggtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaagacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93861" stop="96230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94161" g_stop="94293" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="258" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="305" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="383" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95930" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="463" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E248096" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94161" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGT</genome_strand>
        <mrna_strand>AAGTAACCAATGTTACGGAGTATCATGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCGGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAAGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299169" ref_strand="+" ref_description="SGN-E299169 [cLET-42-H8]">
      <seq>taaccaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93864" stop="96425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94164" g_stop="94293" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="255" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="302" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="380" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="505" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96125" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="543" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E299169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94164" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTG</genome_strand>
        <mrna_strand>TAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206243" ref_strand="+" ref_description="SGN-E206243 [cLEC-29-J2]">
      <seq>accaatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttacagcgttgaggaggttgcttgaacaggacctggcatccgtttcttccagctatatgactacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcatgtttcaaggctatagccctaacagttgataccccaaggctcggacgtagagaagctgatattaagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93866" stop="96274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94166" g_stop="94293" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="253" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="300" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="378" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95974" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="502" r_length="124" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E206243" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94166" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACA</genome_strand>
        <mrna_strand>ACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTACAGCGTTGAGGAGGTTGCTTGAACAGGACCTGGCATCCGTTTCTTCCAGCTATAT.......................................................................................GACTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCATGTTTCAAGGCTATAGCCCTAACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281809" ref_strand="+" ref_description="SGN-E281809 [cLER-14-B24]">
      <seq>caatgttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93868" stop="95241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94168" g_stop="94293" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="251" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="298" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E281809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94168" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</genome_strand>
        <mrna_strand>CAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333530" ref_strand="+" ref_description="SGN-E333530 [cTOD-22-C17]">
      <seq>ttacggagtatcaggagatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93873" stop="96605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94173" g_stop="94293" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="246" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="293" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="371" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="496" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="563" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96305" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="622" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E333530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94173" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTG</genome_strand>
        <mrna_strand>TTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202417" ref_strand="+" ref_description="SGN-E202417 [cLEC-6-E15]">
      <seq>gatcgccaagaaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93889" stop="96599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94189" g_stop="94293" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="230" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="277" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="355" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="480" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="547" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96299" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="600" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E202417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94189" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTT</genome_strand>
        <mrna_strand>GATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295815" ref_strand="+" ref_description="SGN-E295815 [cLET-25-B10]">
      <seq>aaaaagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcccgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93899" stop="96605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94199" g_stop="94293" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="220" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="267" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="345" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="470" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="537" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96305" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="596" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E295815" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94199" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTG</genome_strand>
        <mrna_strand>AAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCCGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200488" ref_strand="+" ref_description="SGN-E200488 [cLEB-8-H10]">
      <seq>aagttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctatgattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggtcgtacagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93902" stop="96426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94202" g_stop="94293" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="217" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="264" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="342" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="467" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96126" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="506" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E200488" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94202" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGA</genome_strand>
        <mrna_strand>AAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTATGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGTCGTACAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300539" ref_strand="+" ref_description="SGN-E300539 [cLET-45-G13]">
      <seq>ttgccaaagatggtttatgactactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcacaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctgacatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93905" stop="96440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94205" g_stop="94293" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="214" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="261" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="339" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="464" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96140" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="517" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E300539" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94205" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTG</genome_strand>
        <mrna_strand>TTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCACAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGACATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727532" ref_strand="+" ref_description="SGN-E727532 [LA14DH08]">
      <seq>gactactatgcctcgagcactgaggacgcagtggactctggatgacaacacagaacgcctgtctccagaattctggataggccccgtattctgattgatgtgagcaaaattgacatgaccaccacagagctaggatacaaaatttcaatgcctatcatgattgcacccacaaccctgcaaaagatgacccatcctgacggggagtatgctacaacaacatcagcatcagtagcaggcacaatcatgaccttgacagtcactgggccagttccactgctgaggaggttgcttcaacaggacctgtgatccgtatcttcctgctttatgtctacaaagacagaaatgttgttgctctacttgtgacgagagctgagaaggaaggtttcaaggctatagccctcacagttgataccccaaggctctgacgtagagactctgatattagaaacacattcttgttgccaccatttttgacattgaacaactttgaacgattggaccttgccgagatggaccgagctaatgactctggcttaacttcgtatgttgctggtcaaattgatcgcactttgacctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaagatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94097" stop="97463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94223" g_stop="94293" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="0.79"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="199" r_length="125" r_score="0.888"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.998" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="246" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="0.966" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="326" r_length="80" r_score="0.821"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="451" r_length="125" r_score="0.912"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="518" r_length="67" r_score="0.910"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="581" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="651" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="752" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="857" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="97236" g_stop="97242" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="864" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E727532" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94223" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACTATGCCTCGGGAGCTGAGGAC-CAGTGGACTCTGGCTGAGAACAGA-AACGCCT-TCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCA-TC-CTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAA</genome_strand>
        <mrna_strand>GACTACTATGCCTCGAGCACTGAGGACGCAGTGGACTCTGGATGACAACACAGAACGCCTGTCTCCAGAATTCT....................................................................................................GGATAGGCCCCGTATTCTGATTGATGTGAGCAAAATTGACATGACCACCACAGAGCTAGGATACAAAATTTCAATGCCTATCATGATTGCACCCACAACCCTGCAAAAGATGACCCATCCTGACG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAACAACATCAGCATCAGTAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGACAGTCACTGGGCCAGTTCCACTGCTGAGGAGGTTGCTTCAACAGGACCTGTGATCCGTATCTTCCTGCTTTAT.......................................................................................GTCTACAAAGACAGAAATGTTGTTGCTCTACTTGTGACGAGAGCTGAGAAGGAAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCTGACGTAGAGACTCTGATATTAGAAACAC................................................................................................................ATTCTTGTTGCCACCATTTTTGACATTGAACAACTTTGAACGATTGGACCTTGCCGAGATGGACCGA............................................................................................GCTAATGACTCTGGCTTAACTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGACCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAAGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737047" ref_strand="+" ref_description="SGN-E737047 [LC08BB09]">
      <seq>ctattatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93925" stop="97403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94225" g_stop="94293" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="194" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="241" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="319" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="444" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="511" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="574" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="644" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="745" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97052" g_stop="97103" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="797" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E737047" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94225" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCC</genome_strand>
        <mrna_strand>CTATTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296128" ref_strand="+" ref_description="SGN-E296128 [cLET-24-J5]">
      <seq>tactatgcctcgggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93926" stop="96605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94226" g_stop="94293" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="193" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="240" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="318" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="443" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="510" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96305" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="569" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E296128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94226" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTG</genome_strand>
        <mrna_strand>TACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339865" ref_strand="+" ref_description="SGN-E339865 [cTOF-3-C10]">
      <seq>gggagctgaggaccagtggactctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgangatgctaggcttgcagttcaagctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93937" stop="97223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94237" g_stop="94293" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="182" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="229" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="307" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="432" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="499" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="562" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="632" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96833" g_stop="96921" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="721" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E339865" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94237" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCG</genome_strand>
        <mrna_strand>GGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGANGATG.....................................................................................................CTAGGCTTGCAGTTCAAGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295329" ref_strand="+" ref_description="SGN-E295329 [cLET-20-L4]">
      <seq>ctctggctgagaacagaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93957" stop="96613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94257" g_stop="94293" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="162" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="209" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="287" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="412" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="479" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="542" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E295329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94257" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</genome_strand>
        <mrna_strand>CTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298448" ref_strand="+" ref_description="SGN-E298448 [cLET-41-E7]">
      <seq>agaaacgccttctcaagaattctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaagctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="93971" stop="96642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94271" g_stop="94293" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="148" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="195" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="273" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="398" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="465" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="528" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E298448" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94271" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACGCCTTCTCAAGAATTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</genome_strand>
        <mrna_strand>AGAAACGCCTTCTCAAGAATTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAAGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731048" ref_strand="+" ref_description="SGN-E731048 [LA26AA02]">
      <seq>ttctgtttaggccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94094" stop="97404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94290" g_stop="94293" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="129" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="176" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="254" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="379" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="446" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="509" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="579" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="680" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97052" g_stop="97104" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="733" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E731048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94290" e_stop="94293"/>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTAAGTAGCTCTAGCTCTAGCTCTAAGACCTGAATTACATAATATATGACTCTTAAGTTATATTCACATGTATAATTCTGTTCTTTTATAACCGATACAGGTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCG</genome_strand>
        <mrna_strand>TTCT....................................................................................................GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737037" ref_strand="+" ref_description="SGN-E737037 [LC08BA09]">
      <seq>caaaaaaaaaaaaaaaaaaaaaagacccccgggggggggccgggaacccattccccctttaagggagtctattaaagccccgtattctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgaccctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgccacaatctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94095" stop="97221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94394" g_stop="94518" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="195" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="242" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="320" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="445" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="512" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="575" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="645" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96833" g_stop="96921" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="734" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E737037" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94394" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCG</genome_strand>
        <mrna_strand>ATTAAAGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACCCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCCACAATCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703819" ref_strand="+" ref_description="SGN-E703819 [FA22CC02]">
      <seq>cgctcattgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaangagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94110" stop="97614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94408" g_stop="94518" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="158" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="236" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="361" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="428" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="491" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="561" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="662" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="767" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97236" g_stop="97314" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="846" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E703819" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94408" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATG</genome_strand>
        <mrna_strand>CGCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAANGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707448" ref_strand="+" ref_description="SGN-E707448 [FA33AB07]">
      <seq>ctctttgatgtgagcaaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatggggacacccacatgctgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94110" stop="97712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94410" g_stop="94518" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="156" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="234" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="359" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="426" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="489" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="559" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="660" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="765" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97236" g_stop="97412" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="942" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E707448" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94410" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTT</genome_strand>
        <mrna_strand>CTCTTTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGGACACCCACATGCTGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246772" ref_strand="+" ref_description="SGN-E246772 [cLEF-45-J16]">
      <seq>aaaattgacatgaccaccacagtgctaggattcaagatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94125" stop="96638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94425" g_stop="94518" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="141" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="219" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="344" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="411" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="474" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E246772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94425" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</genome_strand>
        <mrna_strand>AAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291986" ref_strand="+" ref_description="SGN-E291986 [cLET-7-O20]">
      <seq>agatttcaatgcctatcatgattgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94159" stop="97228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94459" g_stop="94518" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="107" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="185" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="310" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="377" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="440" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="510" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96833" g_stop="96928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="606" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E291986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94459" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTG</genome_strand>
        <mrna_strand>AGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294954" ref_strand="+" ref_description="SGN-E294954 [cLET-17-J15]">
      <seq>tgcaccaacagccatgcagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94181" stop="96634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94481" g_stop="94518" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="85" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="163" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="288" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="355" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="418" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E294954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94481" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</genome_strand>
        <mrna_strand>TGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745230" ref_strand="+" ref_description="SGN-E745230 [GI|1063399]">
      <seq>cagaaaatggcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaccatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgaatactcggtttctgtttaatgagtttacagcttatgttaagcttttcatggtattggaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94197" stop="97866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94497" g_stop="94518" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="69" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="147" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="272" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="339" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="402" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="472" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="573" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="678" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97236" g_stop="97568" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="1008" r_length="330" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E745230" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1011</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94497" e_stop="94518"/>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAATGGCACATCCTGAAGGTATATCTTGCACTCATACAAGTTTTTAACTGTATAATCTTATTATCTGGACTCGTTGGGTGTAACCATGAATTTATATCATGTTATCGTAACTAACCTCAAAGGACATAAGTAATATGTTAATGGACTGTTTCAAATAAACTGAAGATTTGTGAATTTTCATCCATGCATATTTGAGAGGCTTTGAGCTCTGTCTACTTGAGAAACTTGTTGGTCACATTTGGTTTAACTATTAATTATTAGAAGTGATTCTAGAATTCAGATGGCAATGGTTTTACGTGTAGTACTAAACATCTTTTTTGAAGGCTCGAGTATTCTTTATGTGGAAAAACTCTAAGGTGTTTCGGAAGTCTGATTACTTGGTTGCTTTATGCAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTAC-GGTTATGTTAAGCTTTTCATGGTATTGGAAAACT</genome_strand>
        <mrna_strand>CAGAAAATGGCACATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGACCATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGA-AT-ACT-C-GGTTTCTGTTTAATGAGTTTACAGCTTATGTTAAGCTTTTCATGGTATTGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247972" ref_strand="+" ref_description="SGN-E247972 [cLEF-47-A13]">
      <seq>ggcacatcctgaaggggagtatgctacancaagagcagcatgagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94585" stop="97170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="61" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="139" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="264" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="331" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="394" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="464" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96833" g_stop="96870" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="502" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E247972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATT</genome_strand>
        <mrna_strand>GGGAGTATGCTACANCAAGAGCAGCATGAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278131" ref_strand="+" ref_description="SGN-E278131 [cLER-4-L19]">
      <seq>gcacatcctgaaggggagtatgctacagcaagagcagcatcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94585" stop="97019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94895" g_stop="94941" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="60" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="263" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="330" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="393" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96662" g_stop="96719" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="451" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E278131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94895" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTA</genome_strand>
        <mrna_strand>GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340399" ref_strand="+" ref_description="SGN-E340399 [cTOF-2-L4]">
      <seq>tcagcagcaggcacaatcatgacattgtcatcctgggccacttccagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="94621" stop="97644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94921" g_stop="94941" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95686" g_stop="95763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="99" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="224" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="291" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="354" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="424" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="525" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="630" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="97236" g_stop="97344" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="739" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E340399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94921" e_stop="94941"/>
          <exon e_start="95686" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGCAGGCACAATCATGGTTAGTTTCACTTGGTTCTCAATAGTAACTCTAATTTTATAATAATGCCTATGGATTGCAAATATGATGGATTCATAGCTGATGTTAAATAATGTCGTAAAGCAATTTAGGAGTCTCGATAATACTAATATCGTTTCAGCCAATGGTTAGTGACTTTAAATCTTCTTTAGAAATGCATAGTACAATTGAGAGAGTTGAGTCAACTTTGGCTTTGCACTCCATACCTTGCATATAATTATGTTATAATCACAATGAATGAAGCTTTAAGTTTCTGGAAGTGATCAATACATCATATTGTTTCCCCTGCATTTATTTATTTAACGTGTGCGGTCAATCCTCACAAAACAAGTTCTTTTATATTTCCATTTGGTTCTCTTCTTGTGATTAGAAACCTTGGAATTAGTTGTTCATTATGAATAAATTTAAACGGGGTTCGACTTCTTGGTATTTAGAGTATTCATGAACAGAAAAAAGACGTTTCAATGAAAAAGGAGTATATCTTGCACCCTTAGATTTCATGTATGATTTCTGCCTCTTCAGTGCAGCTAATTCAAGCTTTAGTTGTTGTTTGTTACTGTAATTACTATTCCCGGGAGGCAGAAGGATTACGTATTAGGACAACAATTTACTGGTTTCTCAGAAGGCTCTTGAAGCCTCATGAGCTGTTATGATCTAAAGTACTTGTATTTGACTTAGAGTGTGGTGTTTTTCACTTTGTTAACGCTACACAAATTTGTCTTTCAGACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCT</genome_strand>
        <mrna_strand>TCAGCAGCAGGCACAATCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202898" ref_strand="+" ref_description="SGN-E202898 [cLEB-1-N1]">
      <seq>gcacgagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaagctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95408" stop="97231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95712" g_stop="95763" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="59" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="184" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="251" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="314" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="384" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96833" g_stop="96931" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="483" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E202898" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95712" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAG</genome_strand>
        <mrna_strand>CGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAAGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281265" ref_strand="-" ref_description="SGN-E281265 [cLEL-1-A12](-)">
      <seq>gcacgagcgttgaggaggttgcttcaacaggacctggcatccgtttcttccagctttatgtctacaaggacagaaatgctgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95408" stop="96602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95712" g_stop="95763" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="59" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="184" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="251" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96247" g_stop="96302" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="307" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E281265" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281265" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95712" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAG</genome_strand>
        <mrna_strand>CGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT.......................................................................................GTCTACAAGGACAGAAATGCTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261650" ref_strand="+" ref_description="SGN-E261650 [cLEG-61-K19]">
      <seq>gctttatgtctacaaggacagaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95546" stop="97621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95757" g_stop="95763" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87">
            <donor d_prob="0.092" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95851" g_stop="95975" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="132" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="199" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="262" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="332" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="433" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="538" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97236" g_stop="97321" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="624" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E261650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95757" e_stop="95763"/>
          <exon e_start="95851" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTATGTGAGCATGAACTTACTGTTAAAATTTAGGAGAAATGTACACACACCACATTATGCCTAAACTGTATCTATCTTCTCATATATTCAGGTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGA</genome_strand>
        <mrna_strand>GCTTTAT.......................................................................................GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289661" ref_strand="+" ref_description="SGN-E289661 [cLET-4-H14]">
      <seq>agaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaanggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggcgcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95563" stop="97444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95863" g_stop="95975" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="180" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="243" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="313" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="414" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97052" g_stop="97144" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="507" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E289661" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95863" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCT</genome_strand>
        <mrna_strand>AGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAANGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCGCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293519" ref_strand="+" ref_description="SGN-E293519 [cLET-15-L14]">
      <seq>agaaatgttgttgctcaacttgtgaggagagctgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95563" stop="97219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95863" g_stop="95975" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="180" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="243" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="313" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96833" g_stop="96919" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="400" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E293519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95863" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCT</genome_strand>
        <mrna_strand>AGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278054" ref_strand="+" ref_description="SGN-E278054 [cLER-4-G21]">
      <seq>tgaaaaggcaggtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95595" stop="97666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95895" g_stop="95975" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="148" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="211" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="281" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="382" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="487" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97236" g_stop="97366" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="618" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E278054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95895" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTAC</genome_strand>
        <mrna_strand>TGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546406" ref_strand="+" ref_description="SGN-E546406 [TUS-69-M2]">
      <seq>gtttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggattagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgtccagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggaaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagttaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagataactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttaatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95606" stop="97824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95906" g_stop="95975" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="137" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="200" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="270" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="371" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="476" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97236" g_stop="97524" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="765" r_length="289" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E546406" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95906" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTA</genome_strand>
        <mrna_strand>GTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGATTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTCCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGAAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTTAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATAACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTAATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358777" ref_strand="+" ref_description="SGN-E358777 [cLHT-24-G16]">
      <seq>tttcaaggctatagccctcacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggattagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgtccagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggaaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95607" stop="97458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95907" g_stop="95975" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="136" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="199" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="269" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="370" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="475" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97236" g_stop="97240" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="480" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E358777" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95907" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGG</genome_strand>
        <mrna_strand>TTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGATTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTCCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGAAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289607" ref_strand="+" ref_description="SGN-E289607 [cLET-4-O15]">
      <seq>cacagttgataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95625" stop="97397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95925" g_stop="95975" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="118" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="181" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="251" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="352" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97052" g_stop="97097" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="398" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E289607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95925" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAG</genome_strand>
        <mrna_strand>CACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299216" ref_strand="+" ref_description="SGN-E299216 [cLET-43-G23]">
      <seq>gataccccaaggctcggacgtagagaagctgatattaagaacagattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagctttaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95632" stop="97654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95932" g_stop="95975" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="111" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="174" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="244" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="345" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="450" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97236" g_stop="97354" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="569" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E299216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95932" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACT</genome_strand>
        <mrna_strand>GATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTTAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546405" ref_strand="+" ref_description="SGN-E546405 [TUS-69-M2](-)">
      <seq>tagagaagctgatattaagaacagattcgtgttgccaccattttggacatggaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggattagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgtccagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggaaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagttaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagataactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttaatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttagttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95652" stop="97845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95952" g_stop="95975" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="91" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="154" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="224" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="325" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="430" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97236" g_stop="97545" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="739" r_length="309" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="740" polyA_stop="750"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E546405" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95952" e_stop="95975"/>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAAGCTGATATTAAGAACAGGTATATGTCTTAATATTACTGTCACTCTATTAGGTTGTGTTGCCCTTTCAACCAGATAAGGAGCTTAATATATGAAGCTGTTCAAGTTAATTTTATCTTCATCCCCTTGCAGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAA</genome_strand>
        <mrna_strand>TAGAGAAGCTGATATTAAGAACAG................................................................................................................ATTCGTGTTGCCACCATTTTGGACATGGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGATTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTCCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGAAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTTAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATAACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTAATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTA-GTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373029" ref_strand="+" ref_description="SGN-E373029 [TUS-32-N21]">
      <seq>agattcgtgttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgattttgatactcgttttctgtttaatgagtttacgggtatgttaagcttttcatggatttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95786" stop="97866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96086" g_stop="96154" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="132" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="202" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="303" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="408" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97236" g_stop="97555" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="729" r_length="321" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="736" polyA_stop="773"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E373029" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96086" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCG-TTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATG</genome_strand>
        <mrna_strand>AGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTTGATACTCGTTTTCTGTTTAATGAGTTTACGGGTATGTTAAGCTTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737957" ref_strand="+" ref_description="SGN-E737957 [LC11DD02]">
      <seq>ggctgcaggaattcggcacgagggttgccaccatttttgacattgaagaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95792" stop="97845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96088" g_stop="96154" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="84" r_length="67" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="147" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="217" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="318" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="423" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97236" g_stop="97545" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="733" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="734" polyA_stop="745"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E737957" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96088" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAA</genome_strand>
        <mrna_strand>ACGAGGGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733431" ref_strand="+" ref_description="SGN-E733431 [LB10AA05]">
      <seq>agaactttgaaggattggaccttggcaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95817" stop="97802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96117" g_stop="96154" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="101" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="171" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="272" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="377" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97236" g_stop="97502" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="644" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E733431" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96117" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGA</genome_strand>
        <mrna_strand>AGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539343" ref_strand="+" ref_description="SGN-E539343 [TUS-59-A22](-)">
      <seq>tgaaggattgaccttgccaagatggaccaagctaatgactctggcttagcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccacgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95944" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96124" g_stop="96154" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92">
            <donor d_prob="0.655" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96247" g_stop="96309" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="93" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="163" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="264" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="369" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97236" g_stop="97604" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="738" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="740" polyA_stop="749"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E539343" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96124" e_stop="96154"/>
          <exon e_start="96247" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGATTGGACCTTGGCAAGATGGACCAAGTGAGTAGACGAATAGATATTTCTCTGATCTGTGCATCAAGTTCTTGTAAGAATCTGTTTATGTATAATCTTAAATTGTCTTCTTGTTGCAGGCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>TGAAGGATT-GACCTTGCCAAGATGGACCAA............................................................................................GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371339" ref_strand="+" ref_description="SGN-E371339 [TUS-27-C19](-)">
      <seq>gcttcgtatgttgctggtcaaattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaaaaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtcccccgtggaacaaatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttttcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccccattgtcactgaatgggacaccccccatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtttaagaagcttataatttgatttgaatactcgtttctgtttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="95965" stop="97825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96265" g_stop="96309" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="115" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="216" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="321" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97236" g_stop="97524" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="610" r_length="289" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="611" polyA_stop="635"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E371339" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96265" e_stop="96309"/>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGTATAATACCTTTCCTCGGGTCATCCTACATATTCCATGTTTTATTCCACTTTCCATCATTTCTTAAGAATTCAGTAGGCCAAGAACTATTCTTTAATCTTAAAATTGGTAGAAACAGTAAACATATGAAATACACGTATATTTTTTGGCCAATGAGGAAAAGAACATCAGTTTTGTCAGTAGTTCAAGTGCACTGAGGTTAGGATTGAAAGTTGAAACTCAATTTGACATGACAAAAAGAAGATTTGATGAACTTGCATTGCATTTGAAACTGTGATGGACCATTCTGTGCTTAAAAATGAATCTCAAGAAAAATTTCATACGTCAATGATTTCTTTCTGGACTTGAACAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTA</genome_strand>
        <mrna_strand>GCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG................................................................................................................................................................................................................................................................................................................................................................GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAAAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCCCCGTGGAACAAATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTTTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCCCATTGTCACTGAATGGGACACCCCCCATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTTTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733315" ref_strand="+" ref_description="SGN-E733315 [LB04CB11]">
      <seq>gaggctttattgatcgcactttgagctggaaggatgttcagtggctccagactatcacttcaatgccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtacatcctctatttctatatatcatcatatcgtggaactttgcgcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96346" stop="97955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96662" g_stop="96731" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="102" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="203" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="308" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97236" g_stop="97650" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="723" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="742"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E733315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96662" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</genome_strand>
        <mrna_strand>GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293051" ref_strand="+" ref_description="SGN-E293051 [cLET-12-O11]">
      <seq>gccaatcctggtgaagggtgtaattacggctgaggatgctaggcttgcaggtcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacaaatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctctttcagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96394" stop="97796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96694" g_stop="96731" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="139" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="244" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97236" g_stop="97496" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="505" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E293051" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96694" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATA</genome_strand>
        <mrna_strand>GCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGGTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAAATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTTCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285098" ref_strand="+" ref_description="SGN-E285098 [cLER-20-A19]">
      <seq>ttacggctgaggatgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggctgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgattcgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggttttggaaaactgatatattctgataaatggcaagtgatgcctccactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96529" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96717" g_stop="96731" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="116" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="221" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97236" g_stop="97604" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="590" r_length="369" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="603"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E285098" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96717" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGGCTGAGGATGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>TTACGGCTGAGGATG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGCTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTCGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTTTTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325298" ref_strand="-" ref_description="SGN-E325298 [cTOC-1-H23]">
      <seq>tgctaggcttgcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96532" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96730" g_stop="96731" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96833" g_stop="96933" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="103" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="208" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97236" g_stop="97604" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="577" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E325298" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325298" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96730" e_stop="96731"/>
          <exon e_start="96833" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATATGATTCAATACTCTAAAAAATTTACCCTCTTTTATTATTCAGTCCAATTGTGTTCATGCATTAATGCTGAAACAATTTACCATCTTGGACTTGCAGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>TG.....................................................................................................CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283207" ref_strand="+" ref_description="SGN-E283207 [cLER-17-D8]">
      <seq>gcagttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96541" stop="97705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96841" g_stop="96933" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="198" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97236" g_stop="97405" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="368" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E283207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96841" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGC</genome_strand>
        <mrna_strand>GCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288231" ref_strand="-" ref_description="SGN-E288231 [cLES-16-C15]">
      <seq>agttcaggctggagcagctggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagccttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96543" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96843" g_stop="96933" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="196" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97236" g_stop="97604" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="565" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="586"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E288231" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288231" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96843" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>AGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCCTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325505" ref_strand="-" ref_description="SGN-E325505 [cTOC-1-P8]">
      <seq>tggtatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaccaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96561" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96861" g_stop="96933" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="178" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97236" g_stop="97604" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="547" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E325505" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325505" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96861" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>TGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCACCAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366302" ref_strand="+" ref_description="SGN-E366302 [cLPT-1-A3](-)">
      <seq>tatcattgtgtcaaaccatggtgctcgccagctcgattatgtccctgcaacaatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttgcatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagataactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggctgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96564" stop="97884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96864" g_stop="96933" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="175" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97236" g_stop="97586" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="526" r_length="351" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E366302" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96864" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATG</genome_strand>
        <mrna_strand>TATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGCATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATAACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGCTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295572" ref_strand="+" ref_description="SGN-E295572 [cLET-23-B18]">
      <seq>attgtgtcaaaccatggtgctcgccagctcgattatgtccctgcagggatctcggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagctttttcatggtattggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96568" stop="97865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96868" g_stop="96933" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="171" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97236" g_stop="97565" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="502" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E295572" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96868" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGC-TTTTCATGGTATTGGAAA</genome_strand>
        <mrna_strand>ATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAGGGATCTCGGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTTCATGGTATTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295687" ref_strand="+" ref_description="SGN-E295687 [cLET-25-F4]">
      <seq>ggctcttgaagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96750" stop="97898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96921" g_stop="96933" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="118" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97236" g_stop="97598" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="481" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E295687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96921" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCTTGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCC</genome_strand>
        <mrna_strand>GGCTCTTGAAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735710" ref_strand="+" ref_description="SGN-E735710 [LC02CH02]">
      <seq>cgaataggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtacatcctctatttctatatatcatcatatcgtggaactttgcgcgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96750" stop="97955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96927" g_stop="96933" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="112" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97236" g_stop="97650" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="527" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="542"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E735710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96927" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</genome_strand>
        <mrna_strand>CGAATAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739093" ref_strand="+" ref_description="SGN-E739093 [LC16AD08]">
      <seq>aagaggttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtacatcctctatttctatatatcatcatatcgtggaactttgcgcgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96750" stop="97955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96929" g_stop="96933" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="110" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97236" g_stop="97650" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="525" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="540"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E739093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96929" e_stop="96933"/>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGTATATGACTTGTTTCTAACCGTACTTGTTCTTTTGTTGTTCCTGTTACCTGTTCTTTGCCTTCTGTTGGGAGCTTCTACACACATCCTGATTTTCTCCGTTCATGCTGTTGTTCCAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</genome_strand>
        <mrna_strand>AAGAG......................................................................................................................GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736815" ref_strand="+" ref_description="SGN-E736815 [LC07BD02]">
      <seq>ccctttagttgtgaaaggtgcacaaggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactacaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaacaagcttataatttgatttgaatactcgtttctgcttaatgaccttacggttatgttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96752" stop="97847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97052" g_stop="97156" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="112" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97547" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="424" r_length="312" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E736815" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97052" e_stop="97156"/>
          <exon e_start="97236" e_stop="97547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGC</genome_strand>
        <mrna_strand>GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTACAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAACAAGCTTATAATTTGATTTGAATACTCGTTTCTGCTTAATGACCTTACGGTTATGTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226585" ref_strand="+" ref_description="SGN-E226585 [cLEL-26-L24](-)">
      <seq>aggcaggatccccgtattcttggatgaaggtggtccgccgtggaacagaatgtctttaaagcttaggcacttgaagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggaaaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaagaagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgtttcactgtctaaggagcttatgatttgctttgaatactcgtttctgtttaatgagtttgcggttatgttaagcttttcatggaattggacaactgatctattttggtaaaaaaaaaaaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96769" stop="97884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97069" g_stop="97156" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97586" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="441" r_length="351" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="455"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E226585" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97069" e_stop="97156"/>
          <exon e_start="97236" e_stop="97586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAGGATCCCCGTATTCTTGGATGGAGGT-GTCCGCCGTGGAACAG-ATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATG</genome_strand>
        <mrna_strand>AGGCAGGATCCCCGTATTCTTGGATGAAGGTGGTCCGCCGTGGAACAGAATGTCTTTAAAGCTTAGGCACTTGAAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAAAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGAAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGTTTCACTGTCTAAGGAGCTTATGATTTGCTTTGAATACTCGTTTCTGTTTAATGAGTTTGCGGTTATGTTAAGCTTTTCATGGAATTGGACAACTGATCTATTTTGGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287294" ref_strand="+" ref_description="SGN-E287294 [cLES-15-G14]">
      <seq>aggcaggatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96769" stop="97884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97069" g_stop="97156" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97586" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="439" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E287294" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97069" e_stop="97156"/>
          <exon e_start="97236" e_stop="97586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATG</genome_strand>
        <mrna_strand>AGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221916" ref_strand="+" ref_description="SGN-E221916 [cLEL-10-D12](-)">
      <seq>caggatccccgtattcttggatgaaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96772" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97072" g_stop="97156" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97604" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="454" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="476"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E221916" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97072" e_stop="97156"/>
          <exon e_start="97236" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>CAGGATCCCCGTATTCTTGGATGAAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281940" ref_strand="-" ref_description="SGN-E281940 [cLES-2-J22]">
      <seq>gatccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96775" stop="97884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97075" g_stop="97156" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97586" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="433" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="445"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E281940" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281940" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97075" e_stop="97156"/>
          <exon e_start="97236" e_stop="97586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATG</genome_strand>
        <mrna_strand>GATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283604" ref_strand="+" ref_description="SGN-E283604 [cLES-1-G17](-)">
      <seq>atccccgtattcttggatggaggtgtccgccgtggaacagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagtttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtacatcctctatttctatatatcatcatatcgtggaactttgcgcgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96776" stop="97955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97076" g_stop="97156" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97650" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="496" r_length="415" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E283604" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97076" e_stop="97156"/>
          <exon e_start="97236" e_stop="97650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</genome_strand>
        <mrna_strand>ATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGTTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230843" ref_strand="+" ref_description="SGN-E230843 [cLEL-35-K3](-)">
      <seq>acagatgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96812" stop="97845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97112" g_stop="97156" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97545" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="355" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="373"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E230843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97112" e_stop="97156"/>
          <exon e_start="97236" e_stop="97545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAA</genome_strand>
        <mrna_strand>ACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284588" ref_strand="-" ref_description="SGN-E284588 [cLES-3-G7]">
      <seq>tgtctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaaacttttcatggtattgaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96817" stop="97868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97117" g_stop="97156" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97568" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="373" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E284588" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284588" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97117" e_stop="97156"/>
          <exon e_start="97236" e_stop="97568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACT</genome_strand>
        <mrna_strand>TGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAACTTTTCATGGTATTGAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249638" ref_strand="-" ref_description="SGN-E249638 [cLEF-56-O24]">
      <seq>ctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggtcactgttaagcttttcatggtattggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96820" stop="97866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97120" g_stop="97156" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97571" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="374" r_length="337" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E249638" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249638" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97120" e_stop="97156"/>
          <exon e_start="97236" e_stop="97571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTA-TGTTAAGCTTTTCATGGTATTGGAAAACTGAT</genome_strand>
        <mrna_strand>CTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTCACTGTTAAGCTTTTCATGGTATTGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230484" ref_strand="+" ref_description="SGN-E230484 [cLEL-35-K3](-)">
      <seq>ctttaaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgccaaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96820" stop="97847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97120" g_stop="97156" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97540" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="342" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="365"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E230484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97120" e_stop="97156"/>
          <exon e_start="97236" e_stop="97540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTAT</genome_strand>
        <mrna_strand>CTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221513" ref_strand="+" ref_description="SGN-E221513 [cLEL-10-D12](-)">
      <seq>aaagctttggcacttggagcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96824" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97124" g_stop="97156" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97604" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="402" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="423"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E221513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97124" e_stop="97156"/>
          <exon e_start="97236" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>AAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238761" ref_strand="+" ref_description="SGN-E238761 [cLEL-9-M11](-)">
      <seq>gcttcaggcatttttattggaaggccagtagttttctcattggctgctgaaggagaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacacccncacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96936" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97142" g_stop="97156" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79">
            <donor d_prob="0.938" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97236" g_stop="97604" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="385" r_length="370" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="407"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E238761" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97142" e_stop="97156"/>
          <exon e_start="97236" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGGCATTTTTGTAAGTACCATATACTGATTGGACCTAGATTGGTAGCCACATAGCTCAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCC-CACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>GCTTCAGGCATTTTT...............................................................................ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCNCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216288" ref_strand="+" ref_description="SGN-E216288 [cLEL-13-N11](-)">
      <seq>caatcttttatctttatgtggtggttttcccagattggaaggccagtagttttctcattggctgctaaagaaaaagctggagtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttccctgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtacatcctctatttctatatatcatcatatcgtggaactttgcgcgtaaaaaaaaaaaaaaaaaagagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96903" stop="97955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97203" g_stop="97650" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="451" polyA_stop="470"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E216288" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97203" e_stop="97650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</genome_strand>
        <mrna_strand>CAATCTTTTATCTTTATGTGGTGGTTTTCCCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTAAAGAAAAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCCCTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222341" ref_strand="+" ref_description="SGN-E222341 [cLEL-16-C19](-)">
      <seq>gtgaaaaaagtgctgcaaatgttgcgcgatgagtttgagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtacatcctctatttctatataccatcatatcgtggaactttgcgcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96984" stop="97955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97284" g_stop="97650" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="386"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E222341" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97284" e_stop="97650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</genome_strand>
        <mrna_strand>GTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATACCATCATATCGTGGAACTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238990" ref_strand="+" ref_description="SGN-E238990 [cLEL-9-M11](-)">
      <seq>gtgaaaaaagtgctgcaaatgttgcgcgatgagtttaagctaactatggcattgagtggctgtcgctcactgaaggagattactagaaaccnacattgtcactgaatgggacacccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctcccctgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96984" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97284" g_stop="97604" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="345"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E238990" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97284" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACC-ACATTGTCACTGAATGGGACA-CCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>GTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTAAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCNACATTGTCACTGAATGGGACACCCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226412" ref_strand="+" ref_description="SGN-E226412 [cLEL-26-J8](-)">
      <seq>aaaaagtgctgcaaatgttgcgcgataagtttaagctaactatggcattgagtggctgtcgctcactaaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="96988" stop="97884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97288" g_stop="97586" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="300" polyA_stop="313"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E226412" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97288" e_stop="97586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATG</genome_strand>
        <mrna_strand>AAAAAGTGCTGCAAATGTTGCGCGATAAGTTTAAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTAAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222596" ref_strand="+" ref_description="SGN-E222596 [cLEL-16-C19](-)">
      <seq>ctgtcgctcactgaaggagattactagaaaccacattgtcactgaatgggacaccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtacatcctctatttctatatatcatcatatcgtggaactttgcgcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="97043" stop="97955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97343" g_stop="97650" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="327"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E222596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97343" e_stop="97650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</genome_strand>
        <mrna_strand>CTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230274" ref_strand="+" ref_description="SGN-E230274 [cLEL-33-N20](-)">
      <seq>caccccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="97094" stop="97884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97394" g_stop="97586" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="194" polyA_stop="205"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E230274" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97394" e_stop="97586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATG</genome_strand>
        <mrna_strand>CACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233913" ref_strand="+" ref_description="SGN-E233913 [cLEL-8-A3](-)">
      <seq>accccacatgctgctcttccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaaaaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="97095" stop="97884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97395" g_stop="97586" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="193" polyA_stop="205"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E233913" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97395" e_stop="97586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATG</genome_strand>
        <mrna_strand>ACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAAAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTCCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291406" ref_strand="+" ref_description="SGN-E291406 [cLET-2-L4]">
      <seq>tccagccccaaggttgtgagcatgttcttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtacatcctctatttctatatatcatcatatcgtggaactttgcgcgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="97112" stop="97955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97412" g_stop="97650" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="242" polyA_stop="261"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E291406" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97412" e_stop="97650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</genome_strand>
        <mrna_strand>TCCAGCCCCAAGGTTGTGAGCATGTTCTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291493" ref_strand="+" ref_description="SGN-E291493 [cLET-2-L16]">
      <seq>tccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtacatcctctatttctatatatcatcatatcgtggaactttgcgcgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="97112" stop="97955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97412" g_stop="97650" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E291493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97412" e_stop="97650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</genome_strand>
        <mrna_strand>TCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294144" ref_strand="+" ref_description="SGN-E294144 [cLET-13-N13]">
      <seq>tccagccccaaggttgtgagcatgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtacatcctctatttctatatatcatcatatcgtggaactttgcgcgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="97112" stop="97955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97412" g_stop="97650" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="242" polyA_stop="261"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E294144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97412" e_stop="97650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</genome_strand>
        <mrna_strand>TCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344978" ref_strand="+" ref_description="SGN-E344978 [cTOF-22-M4]">
      <seq>tgtacttgaagtttcatattatttcatcaaagcaatattgcttcactgtctaagaagcttataatttgatttgaatactcgtttctgtttaatgagtttacggttatgttaagcttttcatggtattggaaaactgatatattctgataaatggcaagtgatgcctccactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="97134" stop="97909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97434" g_stop="97604" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="174" polyA_stop="185"/>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E344978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97434" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</genome_strand>
        <mrna_strand>TGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271445" ref_strand="+" ref_description="SGN-E271445 [cLEM-5-L15]">
      <seq>cccaaagagctacagaggtttaagcaaaagcaaaaatggggaagaaacgggaacgcctcacaaatccagaacccttccttgacgatgattcaaaatccaaagcttcctcgaagaaacgctccaaagctcctaaatctcaccagcagcaacaacaggttatatcgtctagtattagttcgaagatattgaaggaggcgttacttcagcagaaggaagtatatgaggaggagacacgagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgacgatgacattgataattttagtgggtttcaggagactcaaagtcaatttggtgatttggaggatgaggttgacaagttgctattggaggatgagaagctattggaggctttttattctacacaaaatcgccctgaacgcacattgggccaaatccttattgaaaagagcaaggaacagaacgcacaagtttcttcagtgcaaccaatgcctaaattggatgaatcgatcattgaattatacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98645" stop="100528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98945" g_stop="99099" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99195" g_stop="99401" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="362" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99853" g_stop="99988" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="498" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99989" i_stop="100180" i_length="192">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100181" g_stop="100228" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="546" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E271445" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98945" e_stop="99099"/>
          <exon e_start="99195" e_stop="99401"/>
          <exon e_start="99853" e_stop="99988"/>
          <exon e_start="100181" e_stop="100228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAGAGCTACAGAGGTTTAAGCAAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAGGCAAATCGCACTATACGATTTCGGCTGAAATAAGTAGTTAAGAAATTGATTGAATAAACTTAAGAACTAATTGTGGATTTGTTTGTTGTTGACAGGTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAGGTTTTATTCCGTCATTTCAGAATAGAAAACAACTATCACCAACATTTGACTTGCGATTGTTCTTGAGCAACCGAAGCTTTAATTACATTTATTATCAAACTTCTTTTAAGCAATTTGACAATGTCCTTTATCCAAAATAATAATCATAAAAGCTATTTAACTATGAGAACTGATTATGTTTGTTTGTTGCAGTGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAG</genome_strand>
        <mrna_strand>CCCAAAGAGCTACAGAGGTTTAAGCAAAAGCAAAAATGGGGAAGAAACGGGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAG...............................................................................................GTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTATATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAG................................................................................................................................................................................................TGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704503" ref_strand="+" ref_description="SGN-E704503 [FA24BH08]">
      <seq>gagctacagaggtttaagcaaaagcaaaaatggggaagaaacgagaacgcctcacaaatccagaacccttccttgacgatgattcaaaatccaaagcttcctcgaagaaacgctccaaagctcctaaatctcaccagcagcaacaacaggttatatcgtctagtattagttcgaagatattgaaggaggcgttacttcagcagaaggaagtagatgaggaggagacacgagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgacgatgacattgataattttagtgggtttcaggagactcaaagtcaatttggtgatttggaggatgaggttgacaagttgctattggaggatgagaagctattggaggctttttattctacacaaaatcgccctgaacgcacattgggccaaatccttattgaaaagagcaaggaacagaacgcacaagtttcttcagtgcaaccaatgcctaaattggatgaatcgatcattgaattatacaaaggtgttggcaagcatcttagcaaatacaattcaggcaagatgccaaaagcgttcaaacatattccttcattgcaatattgggaagatgttctatatttaacagaacctgagaaatggtcaccaaatgcaatgtaccaagccacaagaatatttgcttcaaatttgggtgtcaagaaggcagaacgcttctacaagttggtcttactcccacgagttagagatgatattcgcaagaataagagattgcattttgctctgtatcagtccttgaagaaatctctttataagcctgctgccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98651" stop="100908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98951" g_stop="99099" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99195" g_stop="99401" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="356" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99853" g_stop="99988" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="492" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99989" i_stop="100180" i_length="192">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100181" g_stop="100229" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="541" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100230" i_stop="100309" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100310" g_stop="100608" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="840" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E704503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98951" e_stop="99099"/>
          <exon e_start="99195" e_stop="99401"/>
          <exon e_start="99853" e_stop="99988"/>
          <exon e_start="100181" e_stop="100229"/>
          <exon e_start="100310" e_stop="100608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTACAGAGGTTTAAGCAAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAGGCAAATCGCACTATACGATTTCGGCTGAAATAAGTAGTTAAGAAATTGATTGAATAAACTTAAGAACTAATTGTGGATTTGTTTGTTGTTGACAGGTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAGGTTTTATTCCGTCATTTCAGAATAGAAAACAACTATCACCAACATTTGACTTGCGATTGTTCTTGAGCAACCGAAGCTTTAATTACATTTATTATCAAACTTCTTTTAAGCAATTTGACAATGTCCTTTATCCAAAATAATAATCATAAAAGCTATTTAACTATGAGAACTGATTATGTTTGTTTGTTGCAGTGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGGGTATGTTTCTCCTGGTCCTTATTTTATCAGTTCTTTATCTGCAAGCTTAGCTTGCCTGACTGGCGGTGGTTGTTTTGCAGTGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATGTACCAAGCCACAAGAATATTTGCTTCAAATTTGGGTGTCAAGAAGGCAGAACGCTTCTACAAGTTGGTCTTACTCCCACGAGTTAGAGATGATATTCGCAAGAATAAGAGATTGCATTTTGCTCTGTATCAGTCCTTGAAGAAATCTCTTTATAAGCCTGCTGCCTTTA</genome_strand>
        <mrna_strand>GAGCTACAGAGGTTTAAGCAAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAG...............................................................................................GTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAG................................................................................................................................................................................................TGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGG................................................................................TGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATGTACCAAGCCACAAGAATATTTGCTTCAAATTTGGGTGTCAAGAAGGCAGAACGCTTCTACAAGTTGGTCTTACTCCCACGAGTTAGAGATGATATTCGCAAGAATAAGAGATTGCATTTTGCTCTGTATCAGTCCTTGAAGAAATCTCTTTATAAGCCTGCTGCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300347" ref_strand="+" ref_description="SGN-E300347 [cLEW-17-L1]">
      <seq>agaggtttaagcaaaagcaaaaatggggaagaaacgggaacgcctcacaaatccagaacccttccttgacgatgattcaaaatccagagcttcctcgaagaaacgctccaaagctcctaaatctcaccagcagcaacaacaggttatatcgtctagtattagttcgaagatattgaaggaggcgttacttcagcagaaggaagtagatgaggaggagacacgagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgacgatgacattgataattttagtgggtttcaggagactcaaagtcaatttggtgatttggaggatgaggttgacaagtcgctattggaggatgagaagctattggaggctttttattctacacaaaatcgccctgaacgcacattgggccaaatccttattgaaaagagcacggaacagaacgcacaagtttcttcagtgcaaccaatgcctaaattggatgaatcgatcattgaattatacaaaggtgttggcaagcatcttagcaaatacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98658" stop="100638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98958" g_stop="99099" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99195" g_stop="99401" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="349" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99853" g_stop="99988" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="485" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99989" i_stop="100180" i_length="192">
            <donor d_prob="0.777" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100181" g_stop="100229" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="534" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100230" i_stop="100309" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100310" g_stop="100338" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="563" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E300347" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98958" e_stop="99099"/>
          <exon e_start="99195" e_stop="99401"/>
          <exon e_start="99853" e_stop="99988"/>
          <exon e_start="100181" e_stop="100229"/>
          <exon e_start="100310" e_stop="100338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTTTAAGCAAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAGGCAAATCGCACTATACGATTTCGGCTGAAATAAGTAGTTAAGAAATTGATTGAATAAACTTAAGAACTAATTGTGGATTTGTTTGTTGTTGACAGGTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAGGTTTTATTCCGTCATTTCAGAATAGAAAACAACTATCACCAACATTTGACTTGCGATTGTTCTTGAGCAACCGAAGCTTTAATTACATTTATTATCAAACTTCTTTTAAGCAATTTGACAATGTCCTTTATCCAAAATAATAATCATAAAAGCTATTTAACTATGAGAACTGATTATGTTTGTTTGTTGCAGTGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGGGTATGTTTCTCCTGGTCCTTATTTTATCAGTTCTTTATCTGCAAGCTTAGCTTGCCTGACTGGCGGTGGTTGTTTTGCAGTGTTGGCAAGCATCTTAGCAAATACAATT</genome_strand>
        <mrna_strand>AGAGGTTTAAGCAAAAGCAAAAATGGGGAAGAAACGGGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAGAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAG...............................................................................................GTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGTTGACAAGTCGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCACGGAACAGAACGCACAAGTTTCTTCAG................................................................................................................................................................................................TGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGG................................................................................TGTTGGCAAGCATCTTAGCAAATACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201089" ref_strand="+" ref_description="SGN-E201089 [cLEC-10-M17]">
      <seq>tcgtgccgaattcggcacgagcagaggtttaagcaaaagcaaaaatggggaagaaacgagaacgcctcacaaatccagaacccttccttgacgatgattcaaaatccaaagcttcctcgaagaaacgctccaaagctcctaaatctcaccagcagcaacaacaggttatatcgtctagtattagttcgaagatattgaaggaggcgttacttcagcagaaggaagtagatgaggaggagacacgagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgacgatgacattgataattttagtgggtttcaggagactcaaagtcaatttggtgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98654" stop="99700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98958" g_stop="99099" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="164" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99195" g_stop="99400" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="370" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E201089" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98958" e_stop="99099"/>
          <exon e_start="99195" e_stop="99400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTTTAAGCAAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAGGCAAATCGCACTATACGATTTCGGCTGAAATAAGTAGTTAAGAAATTGATTGAATAAACTTAAGAACTAATTGTGGATTTGTTTGTTGTTGACAGGTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGA</genome_strand>
        <mrna_strand>AGAGGTTTAAGCAAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAG...............................................................................................GTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253633" ref_strand="+" ref_description="SGN-E253633 [cLEG-32-E2]">
      <seq>ttaagcaaaagcaaaaatggggtttaaacgagatcgcctcacagatccagaaccgttccttgacgatgattcaaaatccaaagcttcctggaagaaacgctccaaagctcctaaatctcaccagcagcaacaacaggttatatcgtctagtattagttcgaagatattgaaggaggcgttacttcagcagaaggaagtagatgaggaggagacacgagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgacgatgacattgataattttagtgggtttcaggagactcaaagtcaatttggtgatttggaggatgaggttgacaagttgctattggaggatgagaagctataggaggctgtttattctacacaaaatcgccctgaacgcacattgggccaaatccttattgaaaagagcaaggaacagaacgcacaagtttcttcagtgcaaccaatgcctaaattggatgaatcgatcattgaattatacaaaggtgttggcaagcatcttagcaaatacaattcaggcaagatgccaaaagcgttcaaacatattccttcattgcaatattgggaagatgttctatatttaacagaacctgagaaatggtcaccaaatgcaatgtaccaagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98664" stop="100749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98964" g_stop="99099" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99195" g_stop="99401" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="343" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99853" g_stop="99988" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="479" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99989" i_stop="100180" i_length="192">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100181" g_stop="100229" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="528" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100230" i_stop="100309" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100310" g_stop="100449" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="668" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E253633" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98964" e_stop="99099"/>
          <exon e_start="99195" e_stop="99401"/>
          <exon e_start="99853" e_stop="99988"/>
          <exon e_start="100181" e_stop="100229"/>
          <exon e_start="100310" e_stop="100449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCAAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAGGCAAATCGCACTATACGATTTCGGCTGAAATAAGTAGTTAAGAAATTGATTGAATAAACTTAAGAACTAATTGTGGATTTGTTTGTTGTTGACAGGTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAGGTTTTATTCCGTCATTTCAGAATAGAAAACAACTATCACCAACATTTGACTTGCGATTGTTCTTGAGCAACCGAAGCTTTAATTACATTTATTATCAAACTTCTTTTAAGCAATTTGACAATGTCCTTTATCCAAAATAATAATCATAAAAGCTATTTAACTATGAGAACTGATTATGTTTGTTTGTTGCAGTGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGGGTATGTTTCTCCTGGTCCTTATTTTATCAGTTCTTTATCTGCAAGCTTAGCTTGCCTGACTGGCGGTGGTTGTTTTGCAGTGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATGTACCAAGCCA</genome_strand>
        <mrna_strand>TTAAGCAAAAGCAAAAATGGGGTTTAAACGAGATCGCCTCACAGATCCAGAACCGTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTGGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAG...............................................................................................GTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATAGGAGGCTGTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAG................................................................................................................................................................................................TGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGG................................................................................TGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATGTACCAAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214618" ref_strand="+" ref_description="SGN-E214618 [cLEC-79-K17]">
      <seq>ttaagcaaaagcaaaaatggggaagaaacgagaacgcctcacaaatccagaacccttccttgacgatgattcaaaatccaaagcttcctcgaagaaacgctccaaagctcctaaatctcaccagcagcaacaacaggttatatcgtctagtattagttcgaagatattgaaggaggcgttacttcagcagaaggaagtagatgaggaggagacacgagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgaccatgacattgataattttagtgggtttcaggagactcaaagtcaatttggtgatttggaggatgaggttgacaagttgctattggaggatgagaagctattggaggctttttattctacacaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98664" stop="100218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98964" g_stop="99099" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99195" g_stop="99401" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="343" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99853" g_stop="99918" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="409" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E214618" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98964" e_stop="99099"/>
          <exon e_start="99195" e_stop="99401"/>
          <exon e_start="99853" e_stop="99918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCAAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAGGCAAATCGCACTATACGATTTCGGCTGAAATAAGTAGTTAAGAAATTGATTGAATAAACTTAAGAACTAATTGTGGATTTGTTTGTTGTTGACAGGTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAAT</genome_strand>
        <mrna_strand>TTAAGCAAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAG...............................................................................................GTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACCATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377191" ref_strand="+" ref_description="SGN-E377191 [TUS-19-D12]">
      <seq>aaaagcaaaaatggggaagaaacgagaacgcctcacaaatccagaacccttccttgacgatgattcaaaatccaaagcttcctcgaagaaacgctccaaagctcctaaatctcaccagcagcaacaacaggttatatcgtctagtgttagttcgaagatattgaaggaggcgttacttcagcagaaggaagtagatgaggaggagacacgagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgacgatgacattgataattttagtgggtttcaggagactcaaaggcaatttggtgatttggaggatgaggtggacaagttgctattggaggatgagaagctattggaggctttttattctacacaaaatcgccctgaacgcacattgggccaaattcttattgaagagagcaaggaacagaacgcacaagtttcttcagtgcaaccaatgcctaaattggatgaatcgatcattgaattatacaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98670" stop="100529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98970" g_stop="99099" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99195" g_stop="99401" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="337" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99853" g_stop="99988" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="473" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99989" i_stop="100180" i_length="192">
            <donor d_prob="0.777" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100181" g_stop="100229" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="522" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E377191" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98970" e_stop="99099"/>
          <exon e_start="99195" e_stop="99401"/>
          <exon e_start="99853" e_stop="99988"/>
          <exon e_start="100181" e_stop="100229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAGGCAAATCGCACTATACGATTTCGGCTGAAATAAGTAGTTAAGAAATTGATTGAATAAACTTAAGAACTAATTGTGGATTTGTTTGTTGTTGACAGGTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAGGTTTTATTCCGTCATTTCAGAATAGAAAACAACTATCACCAACATTTGACTTGCGATTGTTCTTGAGCAACCGAAGCTTTAATTACATTTATTATCAAACTTCTTTTAAGCAATTTGACAATGTCCTTTATCCAAAATAATAATCATAAAAGCTATTTAACTATGAGAACTGATTATGTTTGTTTGTTGCAGTGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGG</genome_strand>
        <mrna_strand>AAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAG...............................................................................................GTTATATCGTCTAGTGTTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGGCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGTGGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATTCTTATTGAAGAGAGCAAGGAACAGAACGCACAAGTTTCTTCAG................................................................................................................................................................................................TGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230940" ref_strand="+" ref_description="SGN-E230940 [cLED-5-A9]">
      <seq>aaaagcaaaaatggggaagaaacgagaacgcctcacaaatccagaacccttccttgacgatgattcaaaatccaaagcttcctcgaagaaacgctccaaggctcctaaatctcaccggcagcaacgacgggttatattgcctagtgttagttcgaacatattgaaggaggcgttacttcagcagaaggaagtcgatgaggaggagacacgagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgacgatgacattgataattttagtgggtttcaggagactcaaagtcaatttggtgatttggaggatgagggtgacaagacgctattggaggatgagaagctattggaggctttttattctacacaaaatcgccctgaacgcacattgggccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98670" stop="100244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98970" g_stop="99099" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99195" g_stop="99401" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="337" r_length="207" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99853" g_stop="99944" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="429" r_length="92" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E230940" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98970" e_stop="99099"/>
          <exon e_start="99195" e_stop="99401"/>
          <exon e_start="99853" e_stop="99944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAGGCAAATCGCACTATACGATTTCGGCTGAAATAAGTAGTTAAGAAATTGATTGAATAAACTTAAGAACTAATTGTGGATTTGTTTGTTGTTGACAGGTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAAT</genome_strand>
        <mrna_strand>AAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAGGCTCCTAAATCTCACCGGCAGCAACGACGG...............................................................................................GTTATATTGCCTAGTGTTAGTTCGAACATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTCGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGTGACAAGACGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239532" ref_strand="+" ref_description="SGN-E239532 [cLED-23-A19]">
      <seq>aaaagcaaaaatggggaagaaacgagaacgcctcacaaatccagaacccttccttgacgatgattcaaaatccaaagcttcctcgaagaaacgctccaaagctcctaaatctcaccagcagcaacaacaggttatatcgtctagtattagttcgaagatattgaaggaggcgttacttcagcagaaggaagtagatgaggaggagacacgagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgacgatgacattgataattttagcgggtttcaggagactcaaagtcaatttggtgatttggaggatgaggtcgacaagttgctattggaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98670" stop="100183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98970" g_stop="99099" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99195" g_stop="99401" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="337" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99853" g_stop="99883" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="368" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E239532" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98970" e_stop="99099"/>
          <exon e_start="99195" e_stop="99401"/>
          <exon e_start="99853" e_stop="99883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAGGCAAATCGCACTATACGATTTCGGCTGAAATAAGTAGTTAAGAAATTGATTGAATAAACTTAAGAACTAATTGTGGATTTGTTTGTTGTTGACAGGTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATG</genome_strand>
        <mrna_strand>AAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAG...............................................................................................GTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGCGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGTCGACAAGTTGCTATTGGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255123" ref_strand="+" ref_description="SGN-E255123 [cLEG-31-N2]">
      <seq>ccaaagctcctaaatctcaccagctgcaacaacaggttatatcgtctagtattagttcgaagatattgaaggaggcgttacttcagcagaaggaagtagatgaggaggagacacgagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgancgatgaancccccttgataattttagtgggtttcaggagactcaaagtcaatttggtgatttggaggatgaggttgacaagttgctattggaggatgagaagctattggaggctttttattctacacaaaatcgccctgaacgcacattgggccaaatccttattgaaaagagcaaggaacagaacgcacaagtttcttcagtgcaaccaatgcctaaattggatgaatcgatcattgaattatacaaaggtgttggcaagcatcttagcaaatacaattcaagcaagatgccaaaagcgttcaaacatattccttcattgcaatattgggaagatgttctatatttaacagaacctgagaaatggtcaccaaatgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98765" stop="100739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99065" g_stop="99099" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99195" g_stop="99401" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="248" r_length="213" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99853" g_stop="99988" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="384" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99989" i_stop="100180" i_length="192">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100181" g_stop="100229" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="433" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100230" i_stop="100309" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100310" g_stop="100439" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="563" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E255123" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99065" e_stop="99099"/>
          <exon e_start="99195" e_stop="99401"/>
          <exon e_start="99853" e_stop="99988"/>
          <exon e_start="100181" e_stop="100229"/>
          <exon e_start="100310" e_stop="100439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGCTCCTAAATCTCACCAGCAGCAACAACAGGCAAATCGCACTATACGATTTCGGCTGAAATAAGTAGTTAAGAAATTGATTGAATAAACTTAAGAACTAATTGTGGATTTGTTTGTTGTTGACAGGTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGA-CGATG-A----CATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAGGTTTTATTCCGTCATTTCAGAATAGAAAACAACTATCACCAACATTTGACTTGCGATTGTTCTTGAGCAACCGAAGCTTTAATTACATTTATTATCAAACTTCTTTTAAGCAATTTGACAATGTCCTTTATCCAAAATAATAATCATAAAAGCTATTTAACTATGAGAACTGATTATGTTTGTTTGTTGCAGTGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGGGTATGTTTCTCCTGGTCCTTATTTTATCAGTTCTTTATCTGCAAGCTTAGCTTGCCTGACTGGCGGTGGTTGTTTTGCAGTGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATG</genome_strand>
        <mrna_strand>CCAAAGCTCCTAAATCTCACCAGCTGCAACAACAG...............................................................................................GTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGANCGATGAANCCCCCTTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAG................................................................................................................................................................................................TGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGG................................................................................TGTTGGCAAGCATCTTAGCAAATACAATTCAAGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261211" ref_strand="+" ref_description="SGN-E261211 [cLEG-65-H11]">
      <seq>caaagctcctaaatctctccagcagcaacaacaggttatatcgtctagtattagttcgaagatattgaaggaggcgttacttcagcagatggaagtagatgaggaggagacacgagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgacgatgacattgataattttagtgggtttcaggagactcaaagtcaatttggtgatttggaggatgaggttgacaagttgctattggaggatgagaagctattggaggctttttattctacacaaaatcgccctgaacgcacattgggccaaatccttattgaaaagagcaaggaacagaacgcacaagtttcttcagcgcaaccaatgcctaaattggatgaatcgatcattgaattatacaaaggtgttggcaagcatcttatcaaatacaattcatgcaagatgccaaaagcgttcaaacatattccttcattgcaatattggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98766" stop="100690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99066" g_stop="99099" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99195" g_stop="99401" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="241" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99853" g_stop="99988" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="377" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99989" i_stop="100180" i_length="192">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100181" g_stop="100229" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="426" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100230" i_stop="100309" i_length="80">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100310" g_stop="100390" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="507" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E261211" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99066" e_stop="99099"/>
          <exon e_start="99195" e_stop="99401"/>
          <exon e_start="99853" e_stop="99988"/>
          <exon e_start="100181" e_stop="100229"/>
          <exon e_start="100310" e_stop="100390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCTCCTAAATCTCACCAGCAGCAACAACAGGCAAATCGCACTATACGATTTCGGCTGAAATAAGTAGTTAAGAAATTGATTGAATAAACTTAAGAACTAATTGTGGATTTGTTTGTTGTTGACAGGTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAGGTTTTATTCCGTCATTTCAGAATAGAAAACAACTATCACCAACATTTGACTTGCGATTGTTCTTGAGCAACCGAAGCTTTAATTACATTTATTATCAAACTTCTTTTAAGCAATTTGACAATGTCCTTTATCCAAAATAATAATCATAAAAGCTATTTAACTATGAGAACTGATTATGTTTGTTTGTTGCAGTGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGGGTATGTTTCTCCTGGTCCTTATTTTATCAGTTCTTTATCTGCAAGCTTAGCTTGCCTGACTGGCGGTGGTTGTTTTGCAGTGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGA</genome_strand>
        <mrna_strand>CAAAGCTCCTAAATCTCTCCAGCAGCAACAACAG...............................................................................................GTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGATGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAG................................................................................................................................................................................................CGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGG................................................................................TGTTGGCAAGCATCTTATCAAATACAATTCATGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316838" ref_strand="+" ref_description="SGN-E316838 [cTOA-27-G11]">
      <seq>gagagagaaatcctaatgctatagtgttttcggaggatgttgcaactagagctgttgaggaggatgacgatgacattgataattttagtgggtttcaggagactcaaagtcaatttggtgatttggaggatgaggttgacaagttgctattggaggatgagaagctattggaggctttttattctacacaaaatcgccctgaacgcacattgggccaaatccttattgaaaagagcaaggaacagaacgcacaagtttcttcagtgcaaccaatgcctaaattggatgaatcgatcattgaattatacaaaggtgttggcaagcatcttagcaaatacaattcaggcaagatgccaaaagcgttcaaacatattccttcattgcaatattgggaagatgttctatatttaacagaacctgagaaatggtcaccaaatgcaatgtaccaagccacaagaatatttgcttcaaatttgggtgtcaagaaggcagaacgcttctacaagttggtcttactcccacgagttagagatgatattcgcaagaataagagattgcattttgctctgtatcagtccttgaagaaatctctttataagcctgctgcctttaataagggaatcttgtttcctttgtgtgagtcagggacatgcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="98974" stop="100937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99274" g_stop="99401" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99853" g_stop="99988" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="264" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99989" i_stop="100180" i_length="192">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100181" g_stop="100229" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="313" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100230" i_stop="100309" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100310" g_stop="100637" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="641" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E316838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99274" e_stop="99401"/>
          <exon e_start="99853" e_stop="99988"/>
          <exon e_start="100181" e_stop="100229"/>
          <exon e_start="100310" e_stop="100637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAGGTTTTATTCCGTCATTTCAGAATAGAAAACAACTATCACCAACATTTGACTTGCGATTGTTCTTGAGCAACCGAAGCTTTAATTACATTTATTATCAAACTTCTTTTAAGCAATTTGACAATGTCCTTTATCCAAAATAATAATCATAAAAGCTATTTAACTATGAGAACTGATTATGTTTGTTTGTTGCAGTGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGGGTATGTTTCTCCTGGTCCTTATTTTATCAGTTCTTTATCTGCAAGCTTAGCTTGCCTGACTGGCGGTGGTTGTTTTGCAGTGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATGTACCAAGCCACAAGAATATTTGCTTCAAATTTGGGTGTCAAGAAGGCAGAACGCTTCTACAAGTTGGTCTTACTCCCACGAGTTAGAGATGATATTCGCAAGAATAAGAGATTGCATTTTGCTCTGTATCAGTCCTTGAAGAAATCTCTTTATAAGCCTGCTGCCTTTAATAAGGGAATCTTGTTTCCTTTGTGTGAG</genome_strand>
        <mrna_strand>GAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAG................................................................................................................................................................................................TGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGG................................................................................TGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATGTACCAAGCCACAAGAATATTTGCTTCAAATTTGGGTGTCAAGAAGGCAGAACGCTTCTACAAGTTGGTCTTACTCCCACGAGTTAGAGATGATATTCGCAAGAATAAGAGATTGCATTTTGCTCTGTATCAGTCCTTGAAGAAATCTCTTTATAAGCCTGCTGCCTTTAATAAGGGAATCTTGTTTCCTTTGTGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313482" ref_strand="+" ref_description="SGN-E313482 [cTOA-13-N7]">
      <seq>gatgacattgataattttagtgggtttcaagagactcaaagtcaatttggtgatttggaggatgaggttgacaagttgctattggaggatgagaagctattggaggctttttattctacacaaaatcgccctgaacgcacattgggccaaatccttattgaaaagagcaaggaacagaacgcacaagtttcttcagtgcaaccaatgcctaaattggatgaatcgatcattgaattatacaaaggtgttggcaagcatcttagcaaatacaattcaggcaagatgccaaaagcgttcaaacatattccttcattgcaatattgggaagatgttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="99042" stop="100700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99342" g_stop="99401" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451">
            <donor d_prob="0.788" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99853" g_stop="99988" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="196" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99989" i_stop="100180" i_length="192">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100181" g_stop="100229" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="245" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100230" i_stop="100309" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100310" g_stop="100400" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="336" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E313482" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99342" e_stop="99401"/>
          <exon e_start="99853" e_stop="99988"/>
          <exon e_start="100181" e_stop="100229"/>
          <exon e_start="100310" e_stop="100400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAGGTAACTACTTTGTGAAATTAGCTTAGTGGCTGCTAGGAAGGTTGATTGATGTAGTAACTATTCAATTGCTTAAACTTTTTATTGTGTTTCATTGACATGGAACTGTTTAGTCTGTATGAGCTTCACAAACTTCCTATAACTGGAACATAGAGGATTCCTTATTGAGCAGATCTGCAGATGGATATAGATGATTTATAAAGCCTATCTCGACTAATTTTGGTTTGAGGTCTAGTTATTTGCTTAGTTGATTTTCATTGACACCGGTTATGACTGGACCTTTTCTAGCTACAACAAGAGCATCATTTTATCTGTTTAATACAATAAAAATTGGATCTTAACTGATATCTACCAAGACAAGAAAAATCCAATTTTCAAGAATAGAAACGGGTCATTTCTTATGGTATCAGTTCACAACAGTTAATGACTTCTTTTTTTCTGCGCCTCAACACAGGATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAGGTTTTATTCCGTCATTTCAGAATAGAAAACAACTATCACCAACATTTGACTTGCGATTGTTCTTGAGCAACCGAAGCTTTAATTACATTTATTATCAAACTTCTTTTAAGCAATTTGACAATGTCCTTTATCCAAAATAATAATCATAAAAGCTATTTAACTATGAGAACTGATTATGTTTGTTTGTTGCAGTGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGGGTATGTTTCTCCTGGTCCTTATTTTATCAGTTCTTTATCTGCAAGCTTAGCTTGCCTGACTGGCGGTGGTTGTTTTGCAGTGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTA</genome_strand>
        <mrna_strand>GATGACATTGATAATTTTAGTGGGTTTCAAGAGACTCAAAGTCAATTTGGTGATTTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAG................................................................................................................................................................................................TGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGG................................................................................TGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249598" ref_strand="+" ref_description="SGN-E249598 [cLEF-56-C22]">
      <seq>ttgaattatacaaaggtgttggcaagcatcttagcaaatacaattcaggcaagatgccaaaagcgttcaaacatattccttcattgcaatattgggaagatgttctatatttaacagaacctgagaaatggtcaccaaatgcaatgtaccaagccacaagaatatttgcttcaaatttgggtgtcaagaaggcagaacgcttctacaagttggtcttactcccacgagttagagatgatattcgcaagaataagagattgcattttgctctgtatcagtccttgaagaaatctctttataagcctgctgcctttaataagggaatcttgtttcctttgtgtgagtcaaggacatgcaccttgagggaggctgtgatctttgggagtgttattgagaaggtctccattccgcatcttcatgctagtgtagcgctgctgaaacttgcagagatggagtattgtggcacaacaagttatttcatcaagttactgattgagaagaaatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="99914" stop="102571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100214" g_stop="100229" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100230" i_stop="100309" i_length="80">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100310" g_stop="100637" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="344" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100638" i_stop="101433" i_length="796">
            <donor d_prob="0.666" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101434" g_stop="101513" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="424" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101514" i_stop="101773" i_length="260">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101774" g_stop="101821" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="472" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101822" i_stop="102234" i_length="413">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102235" g_stop="102271" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="509" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E249598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100214" e_stop="100229"/>
          <exon e_start="100310" e_stop="100637"/>
          <exon e_start="101434" e_stop="101513"/>
          <exon e_start="101774" e_stop="101821"/>
          <exon e_start="102235" e_stop="102271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTATACAAAGGGTATGTTTCTCCTGGTCCTTATTTTATCAGTTCTTTATCTGCAAGCTTAGCTTGCCTGACTGGCGGTGGTTGTTTTGCAGTGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATGTACCAAGCCACAAGAATATTTGCTTCAAATTTGGGTGTCAAGAAGGCAGAACGCTTCTACAAGTTGGTCTTACTCCCACGAGTTAGAGATGATATTCGCAAGAATAAGAGATTGCATTTTGCTCTGTATCAGTCCTTGAAGAAATCTCTTTATAAGCCTGCTGCCTTTAATAAGGGAATCTTGTTTCCTTTGTGTGAGGTATAAAACTAATGTGAGAAAAATCTTTAAATTGATTGGAGGATTGCATTTATGTCCAAAGTTTACAACTTCTTTTGTAGAAACTAACAATGATTAGATTAGCTATATTGTCTTGATTGCCTACTGATTGTTTACATGACTTGCTTTACAGCAAAATATAGGTCGTGACTCAGGGATATTGAAAAGTGGGTTAAGGGTTTTCCGTTTATCTGCTTCTCTATTTTATGGGTATTTTGTTACAGCTGTGCAAAAAACTTGGTGAAGTCTGGTGTTACATGCATGCTGAGAATTTTGTTGTTAAGCAGGAGTTACTCGAGAACCTGACATTCTTCTTGTATATTTTAGTTAACCAAAAGCTACCAAAAGTTAGTAAGTGGATAGATGAGTCAAAAGTTACCTATGTGGTTAATGTTTCAAAGCCTTGCTTGCAATGAGATATTACAATTGTGTGCTGCCTCTTTTTTTCTTCCTCCTTTTTGGGTGTCTGGGTTTCATACAATTTATGTACTATCTGACTCTTTTTCTTTTGTTGTTGGGAACTTTCATTATGCATAAATTCTCAATGAGAAAAAAGAAAAAGAAAAGAAAGTTTTGTTATGTGCCTGTCTAATCTCTTAGTAACACACGGCCATCCTGTAGTGAGATATGACTTGAGTGTCTGTTGAGATCAGTTTTCTCTGATTCTCTTATGTACTTTCACATTGTCAGGATTTAATATAATTCTACCTCTGTATCATCTCTTTGTATATGTGTATGATGTGTATCCTGCTTTCTGAAATGTCTATTTCTGATCCAGTCAAGGACATGCACCTTGAGGGAGGCTGTGATCTTTGGGAGTGTTATTGAGAAGGTCTCCATTCCGCATCTTCATGCTAGGTATGGTTGCTTGAAATATTTATCGATACACTAAGAGTAGTCAGTAGCTGAATAACTAAACTTTGTATTTTTACTGGAAATTTTAGCTTAGGACAAGATTAGAAACAGAAAGAGTAGTACTCTATTTCTATATCTTATTCTTGTTGCAACTTCCTCTCATCTTTTGCTAATAAAGACAGTTATTATCAAGGTATTGCTGCTGTCTCTGTAATATCTCATTCTTTTAGAAGCCTTTAACTTTTAATCGTTTTGGTATGCAGTGTAGCGCTGCTGAAACTTGCAGAGATGGAGTATTGTGGCACAACAAGGTATTCTACATGTTGTGCTATCTTTTGAACTTTTTCCTTTTAGTTTACCCATGATTCAAGTGCCAGTAGAAAGCTGTACACTAGGATATTTATCCTGGTTAATGTAAAAGTAGCATTAGTTTACGTCAGTCTGCATTCTTTTGAACTGTATACTAGGATATTTATCCTGGTTAATGTAAAGTAGCATTAGTTTACATCAGTCTGCTTTCTTGGAGGGAAAAGTTCTGGATTTAGTTTTTAGGGATGGACCTACATGAAATAATTGCTTTTATTGATATCAATGGGAGCTAAACTATACAGCTGGAACTTTTAAGCATCAGGATATGTTCAATCATGCAAGTCATGCTGTGTTATGCAGAAATTATTTTAGGCTACAACTAGTCTGATCATTTTATTCTTTCTTTTTGCTGCAGTTATTTCATCAAGTTACTGATTGAGAAGAAATATGCT</genome_strand>
        <mrna_strand>TTGAATTATACAAAGG................................................................................TGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATGTACCAAGCCACAAGAATATTTGCTTCAAATTTGGGTGTCAAGAAGGCAGAACGCTTCTACAAGTTGGTCTTACTCCCACGAGTTAGAGATGATATTCGCAAGAATAAGAGATTGCATTTTGCTCTGTATCAGTCCTTGAAGAAATCTCTTTATAAGCCTGCTGCCTTTAATAAGGGAATCTTGTTTCCTTTGTGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGACATGCACCTTGAGGGAGGCTGTGATCTTTGGGAGTGTTATTGAGAAGGTCTCCATTCCGCATCTTCATGCTAG....................................................................................................................................................................................................................................................................TGTAGCGCTGCTGAAACTTGCAGAGATGGAGTATTGTGGCACAACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTCATCAAGTTACTGATTGAGAAGAAATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339588" ref_strand="+" ref_description="SGN-E339588 [cTOE-16-F23]">
      <seq>tttgtgtgagtcaaggacatgcaccttgagggaggctgtgatctttgggagtgttattgagaaggtctccattccgcatcttcatgctagtgtagcgctgctgaaacttgcagagatggagtattgtggcacaacaagttatttcatcaagttactgattgagaagaaatatgctttgccctatcgtgtacttgatgccatggtagcacacttcatgaatttctttgatgaaacaagagtcatgcctgtgatctggcacctgtcacttcttgtatttgtgcagaggtacaaaactgagatgaggaaggaggataaagctaacataagggcacttgttgaaagacaaagacatagattgattacaccagatatattgagggaaatcgaaaagagcagaagtcgtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="101132" stop="103498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101434" g_stop="101513" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="90" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101514" i_stop="101773" i_length="260">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101774" g_stop="101821" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="138" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101822" i_stop="102234" i_length="413">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102235" g_stop="102381" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="285" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102382" i_stop="102984" i_length="603">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102985" g_stop="103057" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="358" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103058" i_stop="103148" i_length="91">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103149" g_stop="103198" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="408" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E339588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101434" e_stop="101513"/>
          <exon e_start="101774" e_stop="101821"/>
          <exon e_start="102235" e_stop="102381"/>
          <exon e_start="102985" e_stop="103057"/>
          <exon e_start="103149" e_stop="103198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGACATGCACCTTGAGGGAGGCTGTGATCTTTGGGAGTGTTATTGAGAAGGTCTCCATTCCGCATCTTCATGCTAGGTATGGTTGCTTGAAATATTTATCGATACACTAAGAGTAGTCAGTAGCTGAATAACTAAACTTTGTATTTTTACTGGAAATTTTAGCTTAGGACAAGATTAGAAACAGAAAGAGTAGTACTCTATTTCTATATCTTATTCTTGTTGCAACTTCCTCTCATCTTTTGCTAATAAAGACAGTTATTATCAAGGTATTGCTGCTGTCTCTGTAATATCTCATTCTTTTAGAAGCCTTTAACTTTTAATCGTTTTGGTATGCAGTGTAGCGCTGCTGAAACTTGCAGAGATGGAGTATTGTGGCACAACAAGGTATTCTACATGTTGTGCTATCTTTTGAACTTTTTCCTTTTAGTTTACCCATGATTCAAGTGCCAGTAGAAAGCTGTACACTAGGATATTTATCCTGGTTAATGTAAAAGTAGCATTAGTTTACGTCAGTCTGCATTCTTTTGAACTGTATACTAGGATATTTATCCTGGTTAATGTAAAGTAGCATTAGTTTACATCAGTCTGCTTTCTTGGAGGGAAAAGTTCTGGATTTAGTTTTTAGGGATGGACCTACATGAAATAATTGCTTTTATTGATATCAATGGGAGCTAAACTATACAGCTGGAACTTTTAAGCATCAGGATATGTTCAATCATGCAAGTCATGCTGTGTTATGCAGAAATTATTTTAGGCTACAACTAGTCTGATCATTTTATTCTTTCTTTTTGCTGCAGTTATTTCATCAAGTTACTGATTGAGAAGAAATATGCTTTGCCCTATCGTGTACTTGATGCCATGGTAGCACACTTCATGAATTTCTTTGATGAAACAAGAGTCATGCCTGTGATCTGGCACCTGTCACTTCTTGTATTTGTGCAGAGGTTAGTTTCACCCTTCCAATCTTGTGGTGTTTCTTCCTCTCTATGTCAAATGGTAGTTGAGTTCGAAGGTTATTTTCTTATTTTGAATGATAAAAGCTTCAAGGTTACTTCTTATACTTAACCCAATTGATAAGCTACATATTAGACTCATTTACACGTCTCGCCTTCTACTGATCATCTTTTCTCTCAAGTAACCATACACACTTTAAATTCTTTTTAGTGTCCTTGTGGAGTAAAATTCTTATTTTGAATATATAATTACAAATTTATTGACAAAATGGGAATGTAAAATGATGATTAACATCAATTTCTTTTATACTAAGGAACATGATGTAACAATTCTTGTTAATTCCTAATGTCTACTTTACTATGCTGTATGACTGACACTGCCTTTCTAAGTATACTTTTAGGTAGACAAGTGTTGTCACTTATTTAGGCGATGTTATGTTCTTTTCTTTTAATAGCAATTCAATGGTAACCTTGATATTGCTTTTGAATCATCGAGTCTTTCTTTTTTACATTCTTGTCAATTTGTTCAATAACATGATAGATTTTGCAGAGTTCTGAATGTTGTTTATACTATGTGGGAAAATATCGTTATAGGTACAAAACTGAGATGAGGAAGGAGGATAAAGCTAACATAAGGGCACTTGTTGAAAGACAAAGACATAGATTGGTATGCTTTTGTATTTTATTTTTTCGTTGCTGCTGTTCTGTTTTCTGTTGATGCAAGCAAATTCAAGTTATGTTTGTGCTTCCAAATGCAGATTACACCAGATATATTGAGGGAAATCGAAAAGAGCAGAAGTCGTGGGGA</genome_strand>
        <mrna_strand>TCAAGGACATGCACCTTGAGGGAGGCTGTGATCTTTGGGAGTGTTATTGAGAAGGTCTCCATTCCGCATCTTCATGCTAG....................................................................................................................................................................................................................................................................TGTAGCGCTGCTGAAACTTGCAGAGATGGAGTATTGTGGCACAACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTCATCAAGTTACTGATTGAGAAGAAATATGCTTTGCCCTATCGTGTACTTGATGCCATGGTAGCACACTTCATGAATTTCTTTGATGAAACAAGAGTCATGCCTGTGATCTGGCACCTGTCACTTCTTGTATTTGTGCAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAACTGAGATGAGGAAGGAGGATAAAGCTAACATAAGGGCACTTGTTGAAAGACAAAGACATAGATTG...........................................................................................ATTACACCAGATATATTGAGGGAAATCGAAAAGAGCAGAAGTCGTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553823" ref_strand="-" ref_description="SGN-E553823 [cTSC-2-F2]">
      <seq>gcagagatggagtaattgtggcacaaacaagttatttcatcaagttactgattgagaagaaatatgctttgccctatcgtgtacttgatgccatggtagcacacttcatgaatttctttgatgaaacaagagtcatgcctgtgatctggcacctgtcacttcttgtatttgtgcagaggtacaaaactgagatgaggaaggaggataaagctaacataagggcacttgttgaaagacaaagacatagattgattacaccagatatattgagggaaatcgaaaagagcagaagtcgtggggaaaaggaggatgatccaatgttaattgcaagtcctctttctgtgatcaataaagcaattgaagaagataggtttgatatccccgatgttcctatggaggaggactagattttctcagcaacctctatacgtgatgcagtatgtgatggggatggtatactagcagattcaggtttcaatatgtaatagagatcgagctgtgtgataagatagatgagcatacatgtgtgggctgttggagttgagctagagattttgcaatatattcttaaatgatatttatattttttgattcctgtcttcatcggcatatgcctaagcaggtttatgcagcgacgaaccagaaagttgtaaccgccatgtttttttgaagtttagtgtatcaatgatactcccctgagaatacatgggttaaatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="101933" stop="104452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102235" g_stop="102381" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="178" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102382" i_stop="102984" i_length="603">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102985" g_stop="103057" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="251" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103058" i_stop="103148" i_length="91">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103149" g_stop="103224" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="327" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103225" i_stop="103660" i_length="436">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103661" g_stop="103765" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="432" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103766" i_stop="103864" i_length="99">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103865" g_stop="104152" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="720" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E553823" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553823" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102235" e_stop="102381"/>
          <exon e_start="102985" e_stop="103057"/>
          <exon e_start="103149" e_stop="103224"/>
          <exon e_start="103661" e_stop="103765"/>
          <exon e_start="103865" e_stop="104152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTCATCAAGTTACTGATTGAGAAGAAATATGCTTTGCCCTATCGTGTACTTGATGCCATGGTAGCACACTTCATGAATTTCTTTGATGAAACAAGAGTCATGCCTGTGATCTGGCACCTGTCACTTCTTGTATTTGTGCAGAGGTTAGTTTCACCCTTCCAATCTTGTGGTGTTTCTTCCTCTCTATGTCAAATGGTAGTTGAGTTCGAAGGTTATTTTCTTATTTTGAATGATAAAAGCTTCAAGGTTACTTCTTATACTTAACCCAATTGATAAGCTACATATTAGACTCATTTACACGTCTCGCCTTCTACTGATCATCTTTTCTCTCAAGTAACCATACACACTTTAAATTCTTTTTAGTGTCCTTGTGGAGTAAAATTCTTATTTTGAATATATAATTACAAATTTATTGACAAAATGGGAATGTAAAATGATGATTAACATCAATTTCTTTTATACTAAGGAACATGATGTAACAATTCTTGTTAATTCCTAATGTCTACTTTACTATGCTGTATGACTGACACTGCCTTTCTAAGTATACTTTTAGGTAGACAAGTGTTGTCACTTATTTAGGCGATGTTATGTTCTTTTCTTTTAATAGCAATTCAATGGTAACCTTGATATTGCTTTTGAATCATCGAGTCTTTCTTTTTTACATTCTTGTCAATTTGTTCAATAACATGATAGATTTTGCAGAGTTCTGAATGTTGTTTATACTATGTGGGAAAATATCGTTATAGGTACAAAACTGAGATGAGGAAGGAGGATAAAGCTAACATAAGGGCACTTGTTGAAAGACAAAGACATAGATTGGTATGCTTTTGTATTTTATTTTTTCGTTGCTGCTGTTCTGTTTTCTGTTGATGCAAGCAAATTCAAGTTATGTTTGTGCTTCCAAATGCAGATTACACCAGATATATTGAGGGAAATCGAAAAGAGCAGAAGTCGTGGGGAAAAGGAGGATGATCCAATGTTAATTGATATCCTCTCATTGATGGTTTAAATCTTTCTGTTACATATCTGCTTGAGCTTAATTTGGTCTGTTTATACTGTGTCGCCTGCTCTTGCCATAACATAGTCGGGTTCTTAATGTTTTAAAAACTGTTGATGAAATAAAAAATCTTTAAACCTTTCGTGCCAGTTCATGCTTAAATTCTGCTATTTCCTGTGAGTGCGTGCATATCTGCATCGATGGAATAGGTTGTCATGCACAACAACAATCTTCTGTTTGTAAGTTTTGTGTATTGTTGAAGTTTGTTGCTTTTTGCAAGATGGATAATTTTTAAATTGTTTATTTCCTGTTGTTCTGTAACGACTGAAGTAAAATAGTAGATGTAGCTATGATTTATTCATGTTGCTATTAATATTTTTTCTGCTGCATCATTGGAAAATATATTTTCTTTAACTCTGTATTACCAAGTCCTCTTTCTGTGATCAATAAAGCAATTGAAGAAGATAGGTTTGATATCCCCGATGTTCCTATGGAGGAGGACTAGATTTTCTCAGCAACCTCTATACGTGGTAAGATACTCGCTCATGTGAATGAAATTTCTTGGTGTATCTATATACGCGTGAAGCTCCAAGCCAATACTGCAGACTAAGTTCCTTTTTTCCCTTCAGATGCAGTATGTGATGGGGATGGTATACTAGCAGATTCAGGTTTCAATATGTAATAGAGATCGAGCTGTGTGATAAGATAGATGAGCATACATGTGTGGGCTGTTGGAGTTGAGCTAGAGATTTTGCAATATATTCTTAAATGATATTTATATTTTTTGATTCCTGTCTTCATCGGCATATGCCTAAGCAGGTTTATGCAGCGACGAACCAGAAAGTTGTAACCGCCATGTTTTTTTGAAGTTTAGTGTATCAATGATACTCCCCTGAGAATACATGGGTTAAATTTTA</genome_strand>
        <mrna_strand>TTATTTCATCAAGTTACTGATTGAGAAGAAATATGCTTTGCCCTATCGTGTACTTGATGCCATGGTAGCACACTTCATGAATTTCTTTGATGAAACAAGAGTCATGCCTGTGATCTGGCACCTGTCACTTCTTGTATTTGTGCAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAACTGAGATGAGGAAGGAGGATAAAGCTAACATAAGGGCACTTGTTGAAAGACAAAGACATAGATTG...........................................................................................ATTACACCAGATATATTGAGGGAAATCGAAAAGAGCAGAAGTCGTGGGGAAAAGGAGGATGATCCAATGTTAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCCTCTTTCTGTGATCAATAAAGCAATTGAAGAAGATAGGTTTGATATCCCCGATGTTCCTATGGAGGAGGACTAGATTTTCTCAGCAACCTCTATACGTG...................................................................................................ATGCAGTATGTGATGGGGATGGTATACTAGCAGATTCAGGTTTCAATATGTAATAGAGATCGAGCTGTGTGATAAGATAGATGAGCATACATGTGTGGGCTGTTGGAGTTGAGCTAGAGATTTTGCAATATATTCTTAAATGATATTTATATTTTTTGATTCCTGTCTTCATCGGCATATGCCTAAGCAGGTTTATGCAGCGACGAACCAGAAAGTTGTAACCGCCATGTTTTTTTGAAGTTTAGTGTATCAATGATACTCCCCTGAGAATACATGGGTTAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377190" ref_strand="+" ref_description="SGN-E377190 [TUS-19-D12](-)">
      <seq>agaaatatgctttgccctatcgtgtacttgatgccatggtagcacacttcaatgaatttcttttgatgaaacaagagtcatgcctgtgatctggcacctgtcacttcttgtatttgtgcagaggtacaaaactgagatgaggaaggaggataaagctaacataagggcacttgttgaaagacaaagacatagattgattacaccagatatattgagggaaatcgaaaagagcagaagtcgtggggaaaaggaggatgatccaatgttaattgcaagtcctctttctgtgatcaataaagcaattgaagaagataggtttgatatccccgatgttcctatggaggaggactagattttctcagcaacctctatacgtgatgcagtatgtgatggggatggtatactagcagattcaggtttcaatatgtaatagagatcgagctgtgtgataagatagatgagcatacatgtgtgggctgttggagttgagctagagattttgcaatatattcttaaatgatatttatattttttgattcctgtcttcatcggcatatgcctaagcaggtttatgcagcgacgaaccagaaagttgtaaccgccatgtttttttgaagtttagtgtatcaatgatactcccctgagaatacatgggttaaattttactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="101961" stop="104455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102261" g_stop="102381" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102382" i_stop="102984" i_length="603">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102985" g_stop="103057" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="196" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103058" i_stop="103148" i_length="91">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103149" g_stop="103224" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="272" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103225" i_stop="103660" i_length="436">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103661" g_stop="103765" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="377" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103766" i_stop="103864" i_length="99">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103865" g_stop="104154" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="667" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E377190" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102261" e_stop="102381"/>
          <exon e_start="102985" e_stop="103057"/>
          <exon e_start="103149" e_stop="103224"/>
          <exon e_start="103661" e_stop="103765"/>
          <exon e_start="103865" e_stop="104154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATATGCTTTGCCCTATCGTGTACTTGATGCCATGGTAGCACACTTC-ATGAATTTC-TTTGATGAAACAAGAGTCATGCCTGTGATCTGGCACCTGTCACTTCTTGTATTTGTGCAGAGGTTAGTTTCACCCTTCCAATCTTGTGGTGTTTCTTCCTCTCTATGTCAAATGGTAGTTGAGTTCGAAGGTTATTTTCTTATTTTGAATGATAAAAGCTTCAAGGTTACTTCTTATACTTAACCCAATTGATAAGCTACATATTAGACTCATTTACACGTCTCGCCTTCTACTGATCATCTTTTCTCTCAAGTAACCATACACACTTTAAATTCTTTTTAGTGTCCTTGTGGAGTAAAATTCTTATTTTGAATATATAATTACAAATTTATTGACAAAATGGGAATGTAAAATGATGATTAACATCAATTTCTTTTATACTAAGGAACATGATGTAACAATTCTTGTTAATTCCTAATGTCTACTTTACTATGCTGTATGACTGACACTGCCTTTCTAAGTATACTTTTAGGTAGACAAGTGTTGTCACTTATTTAGGCGATGTTATGTTCTTTTCTTTTAATAGCAATTCAATGGTAACCTTGATATTGCTTTTGAATCATCGAGTCTTTCTTTTTTACATTCTTGTCAATTTGTTCAATAACATGATAGATTTTGCAGAGTTCTGAATGTTGTTTATACTATGTGGGAAAATATCGTTATAGGTACAAAACTGAGATGAGGAAGGAGGATAAAGCTAACATAAGGGCACTTGTTGAAAGACAAAGACATAGATTGGTATGCTTTTGTATTTTATTTTTTCGTTGCTGCTGTTCTGTTTTCTGTTGATGCAAGCAAATTCAAGTTATGTTTGTGCTTCCAAATGCAGATTACACCAGATATATTGAGGGAAATCGAAAAGAGCAGAAGTCGTGGGGAAAAGGAGGATGATCCAATGTTAATTGATATCCTCTCATTGATGGTTTAAATCTTTCTGTTACATATCTGCTTGAGCTTAATTTGGTCTGTTTATACTGTGTCGCCTGCTCTTGCCATAACATAGTCGGGTTCTTAATGTTTTAAAAACTGTTGATGAAATAAAAAATCTTTAAACCTTTCGTGCCAGTTCATGCTTAAATTCTGCTATTTCCTGTGAGTGCGTGCATATCTGCATCGATGGAATAGGTTGTCATGCACAACAACAATCTTCTGTTTGTAAGTTTTGTGTATTGTTGAAGTTTGTTGCTTTTTGCAAGATGGATAATTTTTAAATTGTTTATTTCCTGTTGTTCTGTAACGACTGAAGTAAAATAGTAGATGTAGCTATGATTTATTCATGTTGCTATTAATATTTTTTCTGCTGCATCATTGGAAAATATATTTTCTTTAACTCTGTATTACCAAGTCCTCTTTCTGTGATCAATAAAGCAATTGAAGAAGATAGGTTTGATATCCCCGATGTTCCTATGGAGGAGGACTAGATTTTCTCAGCAACCTCTATACGTGGTAAGATACTCGCTCATGTGAATGAAATTTCTTGGTGTATCTATATACGCGTGAAGCTCCAAGCCAATACTGCAGACTAAGTTCCTTTTTTCCCTTCAGATGCAGTATGTGATGGGGATGGTATACTAGCAGATTCAGGTTTCAATATGTAATAGAGATCGAGCTGTGTGATAAGATAGATGAGCATACATGTGTGGGCTGTTGGAGTTGAGCTAGAGATTTTGCAATATATTCTTAAATGATATTTATATTTTTTGATTCCTGTCTTCATCGGCATATGCCTAAGCAGGTTTATGCAGCGACGAACCAGAAAGTTGTAACCGCCATGTTTTTTTGAAGTTTAGTGTATCAATGATACTCCCCTGAGAATACATGGGTTAAATTTTACT</genome_strand>
        <mrna_strand>AGAAATATGCTTTGCCCTATCGTGTACTTGATGCCATGGTAGCACACTTCAATGAATTTCTTTTGATGAAACAAGAGTCATGCCTGTGATCTGGCACCTGTCACTTCTTGTATTTGTGCAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAACTGAGATGAGGAAGGAGGATAAAGCTAACATAAGGGCACTTGTTGAAAGACAAAGACATAGATTG...........................................................................................ATTACACCAGATATATTGAGGGAAATCGAAAAGAGCAGAAGTCGTGGGGAAAAGGAGGATGATCCAATGTTAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCCTCTTTCTGTGATCAATAAAGCAATTGAAGAAGATAGGTTTGATATCCCCGATGTTCCTATGGAGGAGGACTAGATTTTCTCAGCAACCTCTATACGTG...................................................................................................ATGCAGTATGTGATGGGGATGGTATACTAGCAGATTCAGGTTTCAATATGTAATAGAGATCGAGCTGTGTGATAAGATAGATGAGCATACATGTGTGGGCTGTTGGAGTTGAGCTAGAGATTTTGCAATATATTCTTAAATGATATTTATATTTTTTGATTCCTGTCTTCATCGGCATATGCCTAAGCAGGTTTATGCAGCGACGAACCAGAAAGTTGTAACCGCCATGTTTTTTTGAAGTTTAGTGTATCAATGATACTCCCCTGAGAATACATGGGTTAAATTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338517" ref_strand="+" ref_description="SGN-E338517 [cTOE-15-L4]">
      <seq>accgaggcacttgttgaaagaaaaagacatagattgattacaccagatatattgagggaaatcgaaaagagcagaagtcgtggggaaaaggaggatgatccaatgttaattgatatcctctcattgatggtttaaatctttctgttaccatatctgcttgagcttaatttggtctgtttatacctgtgtcgcctgctcttgccataacatagtcgggttcttaatgttttaaaaactgttgatgaaataaaaaatctttaaacctttcgtgcccagttcatgccttaaattctgctatttcctgtgagtgccgtgccatatctgcatcgatggaataggttgtcatgcaccaacaacaatcttctgtttgtaagttttgtgtattgttgaagtttgttgctttttgcaagatggataatttttaaattgtttatttcctgttgttctgtaacgactgaagtaaaatagtagatgtagctatgatttattcatgttgctattaatattttttctgctgcatcattggaaaatatattttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="102727" stop="103946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103022" g_stop="103057" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103058" i_stop="103148" i_length="91">
            <donor d_prob="0.946" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103149" g_stop="103646" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="541" r_length="505" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E338517" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103022" e_stop="103057"/>
          <exon e_start="103149" e_stop="103646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGGGCACTTGTTGAAAGACAAAGACATAGATTGGTATGCTTTTGTATTTTATTTTTTCGTTGCTGCTGTTCTGTTTTCTGTTGATGCAAGCAAATTCAAGTTATGTTTGTGCTTCCAAATGCAGATTACACCAGATATATTGAGGGAAATCGAAAAGAGCAGAAGTCGTGGGGAAAAGGAGGATGATCCAATGTTAATTGATATCCTCTCATTGATGGTTTAAATCTTTCTGTTA-CATATCTGCTTGAGCTTAATTTGGTCTGTTTATA-CTGTGTCGCCTGCTCTTGCCATAACATAGTCGGGTTCTTAATGTTTTAAAAACTGTTGATGAAATAAAAAATCTTTAAACCTTTCGTG-CCAGTTCATG-CTTAAATTCTGCTATTTCCTGTGAGTG-CGTG-CATATCTGCATCGATGGAATAGGTTGTCATGCA-CAACAACAATCTTCTGTTTGTAAGTTTTGTGTATTGTTGAAGTTTGTTGCTTTTTGCAAGATGGATAATTTTTAAATTGTTTATTTCCTGTTGTTCTGTAACGACTGAAGTAAAATAGTAGATGTAGCTATGATTTATTCATGTTGCTATTAATATTTTTTCTGCTGCATCATTGGAAAATATATTTTCTT</genome_strand>
        <mrna_strand>ACCGAGGCACTTGTTGAAAGAAAAAGACATAGATTG...........................................................................................ATTACACCAGATATATTGAGGGAAATCGAAAAGAGCAGAAGTCGTGGGGAAAAGGAGGATGATCCAATGTTAATTGATATCCTCTCATTGATGGTTTAAATCTTTCTGTTACCATATCTGCTTGAGCTTAATTTGGTCTGTTTATACCTGTGTCGCCTGCTCTTGCCATAACATAGTCGGGTTCTTAATGTTTTAAAAACTGTTGATGAAATAAAAAATCTTTAAACCTTTCGTGCCCAGTTCATGCCTTAAATTCTGCTATTTCCTGTGAGTGCCGTGCCATATCTGCATCGATGGAATAGGTTGTCATGCACCAACAACAATCTTCTGTTTGTAAGTTTTGTGTATTGTTGAAGTTTGTTGCTTTTTGCAAGATGGATAATTTTTAAATTGTTTATTTCCTGTTGTTCTGTAACGACTGAAGTAAAATAGTAGATGTAGCTATGATTTATTCATGTTGCTATTAATATTTTTTCTGCTGCATCATTGGAAAATATATTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252684" ref_strand="+" ref_description="SGN-E252684 [cLEG-16-O11]">
      <seq>tttttttgatatacaagaaaacagatagttacaggaacattgtattgtattcctataataaggtatatatactctctcatgcacaatcaaatgtgaaagaatcaccagaaaaaaaccagctgagctcccattttctaactacatccaagctactaactggttctctgagaatctctcacactatataaacaaagaaaaaaagatgtagaaataatcaaagaaacgaactccattaaagaggaatattccggggacgtatattctaaaccatccctctggtaaattttcctcagtaatagtcacaatcatgcctgatttgccaaatcattggcgtttatgaatgttccatgaaatccataaagaactcttgatggaagcttcacagttgcctccaacttcaaactcattgcgttaacaatttgcagttctgatttccattctttctcatcgtgaacgaaagctaaaatataaccatcgtcttcttccttgctgttggggtctcttggtaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="123526" stop="124637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123826" g_stop="124337" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E252684" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123826" e_stop="124337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGATATACAAGAAAACAGAGAGTTACAGGAACATTGTATTGTATTCCTATAATAAGGTATATATACTCTCTCATGCACAATCAAATGTGAAAGAATCACCAGAAAAAAACCAGCTGAGCTCCCATTTTCTAACTACATCCAAGCTACTAACTGGTTCTCTGAGAATCTCTCACACTATATAAACAAAG-AAAAAAGATGTAGAAATAATCAAAGAAACGAACTCCATTAAAGAGGAATATTCCGGGGACGTATATTCTAAACCATCCCTCTGGTAAATTTTCCTCAGTAATAGTCACAATCATGCCTGATTTGCCAAATCATTGGCGTTTATGAATGTTCCATGAAATCCATAAGGAACTCTTGATGGAAGCTTCACAGTTGCCTCCAACTTCAAACTCATTGCGTTAACAATTTGCAGTTCTGATTTCCATTCTTTCTCATCGTGAACGAAAGCTAAAATATAACCATCGTCTTCTTCCTTGCTGTTGGGGTCTCTTGGTAAAAAA</genome_strand>
        <mrna_strand>TTTTTTTGATATACAAGAAAACAGATAGTTACAGGAACATTGTATTGTATTCCTATAATAAGGTATATATACTCTCTCATGCACAATCAAATGTGAAAGAATCACCAGAAAAAAACCAGCTGAGCTCCCATTTTCTAACTACATCCAAGCTACTAACTGGTTCTCTGAGAATCTCTCACACTATATAAACAAAGAAAAAAAGATGTAGAAATAATCAAAGAAACGAACTCCATTAAAGAGGAATATTCCGGGGACGTATATTCTAAACCATCCCTCTGGTAAATTTTCCTCAGTAATAGTCACAATCATGCCTGATTTGCCAAATCATTGGCGTTTATGAATGTTCCATGAAATCCATAAAGAACTCTTGATGGAAGCTTCACAGTTGCCTCCAACTTCAAACTCATTGCGTTAACAATTTGCAGTTCTGATTTCCATTCTTTCTCATCGTGAACGAAAGCTAAAATATAACCATCGTCTTCTTCCTTGCTGTTGGGGTCTCTTGGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744843" ref_strand="+" ref_description="SGN-E744843 [GI|2769641]">
      <seq>aaaaaaaaaaaatcccctttccacaacaccaaattgtactattaacatccaaaaaaaagaaaaagaaaataggtagctatggcaactactacttcacatgccacaaatacatggattaagactaagttgtcaatgccatcatcaaaggagtttggttttgcatcaaactctatttctctactcaaaaatcaacataataggcaaagtctcaacattaattcctctcttcaagctccacctatacttcattttcctaaacaatcttcaaattatcaaacaccaaagaataatacaatttcacacccaaaacaagaaaacaacaactcctcttcttcttcaacttccaagtggaatttagtgcagaaagcagcagcaatggctttagatgctgtagaaagtgctttaactaaacatgaacttgaacaccctttgccgaaaacagccgacccacgagtccagatttctgggaattttgctccggtaccggaaaatccagtctgtcaatctcttccggtcaccggaaaaatacccaaatgtgttcaaggcgtttacgttcgaaacggagctaaccctctttttgaaccaaccgccggacaccatttcttcgacggcgacggtatggttcacgccgttcaattcaaaaatgggtcggctagttacgcttgccgtttcactgaaacagagaggcttgttcaagaaaaagctttgggtcgccctgttttccctaaagccattggtgaattacatggtcactctggaattgcaaggcttatgctgttttacgctcgtgggctcttcggacttgttgatcacagtaaaggaactggtgttgcaaacgccggtttagtctatttcaataaccgattacttgctatgtctgaagatgatttgccttaccatgtaaaggtaacacccaccggcgatcttaaaacagagggtcgattcgatttcgacggccagctaaaatccaccatgatagctcacccaaagctcgacccagtttccggtgagctatttgctcttagctacgatgtgattcagaagccatacctcaagtacttcagattttcaaaaaatggggaaaaatcaaatgatgttgaaattccagttgaagacccaacaatgatgcatgatttcgcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttacgacaagaacaaagtttcccgatttggtattctggataagtacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgacaccaccagactccattttcaatgaatgtgatgaagggctaaagagtgttttatccgaaatccgtctcaatttgaaaacagggaaatcaacaagaaaatccataatcgaaaacccggatgaacaagtgaatttagaagctggaatggtgaaccgaaacaaactcggaaggaaaacagagtatgcttatttggctatcgctgaaccatggccaaaagtttctggttttgcaaaagtaaacctgttcaccggtgaagttgagaaattcatttatggtgacaacaaatatggtggggaacctctttttttaccaagagaccccaacagcaaggaagaagacgatggttatattttagctttcgttcacgatgagaaagaatggaaatcagaactgcaaattgttaacgcaatgagtttgaagttggaggcaactgtgaagcttccatcaagagttccttatggatttcatggaacattcataaacgccaatgatttggcaaatcaggcatgattgtgactattactgaggaaaatttaccagagggatggtttagaatatacgtccccggaatattcctctttaatggagttcgtttctttgattatttctacatcttttttctttgtttatatagtgtgagagattctcagagaaccagttagtagcttggatgtagttagaaaatgggagctcagctggtttttttctggtgattctttcacatttgattgtgcatgagagagtatatataccttattataggaatacaatacaatgttccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="126325" stop="123559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126025" g_stop="123855" g_length="2171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2171" r_length="2171" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E744843" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2171</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126025" e_stop="123855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAATCCCCTTTCCACAACACCAAATTGTACTATTAACATCCAAAAAAAAGAAAAAGAAAATAGGTAGCTATGGCAACTACTACTTCACATGCCACAAATACATGGATTAAGACTAAGTTGTCAATGCCATCATCAAAGGAGTTTGGTTTTGCATCAAACTCTATTTCTCTACTCAAAAATCAACATAATAGGCAAAGTCTCAACATTAATTCCTCTCTTCAAGCTCCACCTATACTTCATTTTCCTAAACAATCTTCAAATTATCAAACACCAAAGAATAATACAATTTCACACCCAAAACAAGAAAACAACAACTCCTCTTCTTCTTCAACTTCCAAGTGGAATTTAGTGCAGAAAGCAGCAGCAATGGCTTTAGATGCTGTAGAAAGTGCTTTAACTAAACATGAACTTGAACACCCTTTGCCGAAAACAGCCGACCCACGAGTCCAGATTTCTGGGAATTTTGCTCCGGTACCGGAAAATCCAGTCTGTCAATCTCTTCCGGTCACCGGAAAAATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACCATGGCCAAAAGTTTCTGGTTTTGCAAAAGTAAACCTGTTCACCGGTGAAGTTGAGAAATTCATTTATGGTGACAACAAATATGGTGGGGAACCTCTTTTTTTACCAAGAGACCCCAACAGCAAGGAAGAAGACGATGGTTATATTTTAGCTTTCGTTCACGATGAGAAAGAATGGAAATCAGAACTGCAAATTGTTAACGCAATGAGTTTGAAGTTGGAGGCAACTGTGAAGCTTCCATCAAGAGTTCCTTATGGATTTCATGGAACATTCATAAACGCCAATGATTTGGCAAATCAGGCATGATTGTGACTATTACTGAGGAAAATTTACCAGAGGGATGGTTTAGAATATACGTCCCCGGAATATTCCTCTTTAATGGAGTTCGTTTCTTTGATTATTTCTACATCTTTTTTCTTTGTTTATATAGTGTGAGAGATTCTCAGAGAACCAGTTAGTAGCTTGGATGTAGTTAGAAAATGGGAGCTCAGCTGGTTTTTTTCTGGTGATTCTTTCACATTTGATTGTGCATGAGAGAGTATATATACCTTATTATAGGAATACAATACAATGTTCCTGTA</genome_strand>
        <mrna_strand>AAAAAAAAAAAATCCCCTTTCCACAACACCAAATTGTACTATTAACATCCAAAAAAAAGAAAAAGAAAATAGGTAGCTATGGCAACTACTACTTCACATGCCACAAATACATGGATTAAGACTAAGTTGTCAATGCCATCATCAAAGGAGTTTGGTTTTGCATCAAACTCTATTTCTCTACTCAAAAATCAACATAATAGGCAAAGTCTCAACATTAATTCCTCTCTTCAAGCTCCACCTATACTTCATTTTCCTAAACAATCTTCAAATTATCAAACACCAAAGAATAATACAATTTCACACCCAAAACAAGAAAACAACAACTCCTCTTCTTCTTCAACTTCCAAGTGGAATTTAGTGCAGAAAGCAGCAGCAATGGCTTTAGATGCTGTAGAAAGTGCTTTAACTAAACATGAACTTGAACACCCTTTGCCGAAAACAGCCGACCCACGAGTCCAGATTTCTGGGAATTTTGCTCCGGTACCGGAAAATCCAGTCTGTCAATCTCTTCCGGTCACCGGAAAAATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACCATGGCCAAAAGTTTCTGGTTTTGCAAAAGTAAACCTGTTCACCGGTGAAGTTGAGAAATTCATTTATGGTGACAACAAATATGGTGGGGAACCTCTTTTTTTACCAAGAGACCCCAACAGCAAGGAAGAAGACGATGGTTATATTTTAGCTTTCGTTCACGATGAGAAAGAATGGAAATCAGAACTGCAAATTGTTAACGCAATGAGTTTGAAGTTGGAGGCAACTGTGAAGCTTCCATCAAGAGTTCCTTATGGATTTCATGGAACATTCATAAACGCCAATGATTTGGCAAATCAGGCATGATTGTGACTATTACTGAGGAAAATTTACCAGAGGGATGGTTTAGAATATACGTCCCCGGAATATTCCTCTTTAATGGAGTTCGTTTCTTTGATTATTTCTACATCTTTTTTCTTTGTTTATATAGTGTGAGAGATTCTCAGAGAACCAGTTAGTAGCTTGGATGTAGTTAGAAAATGGGAGCTCAGCTGGTTTTTTTCTGGTGATTCTTTCACATTTGATTGTGCATGAGAGAGTATATATACCTTATTATAGGAATACAATACAATGTTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556788" ref_strand="+" ref_description="SGN-E556788 [cTSD-4-J22]">
      <seq>ttgtattcctataataaggtatatatactctctcatgcacaatcaaatgtgaaagaatcaccagaaaaaaaccagctgagctcccattttctaactacatccaagctactaactggttctctgagaatctctcacactatataaacaaagaaaaaagatgtagaaataatcaaagaaacgaactccattaaagaggaatattccggggacgtatattctaaaccatccctctggtaaattttcctcagtaatagtcacaatcatgcctgatttgccaaatcattggcgtttatgaatgttccatgaaatccataaggaactcttgatggaagcttcacagttgcctccaacttcaaactcattgcgttaacaatttgcagttctgatttccattctttctcatcgtgaacgaaagctaaaatataaccatcgtcttcttccttgctgttggggtctcttggtaaaaaaagaggttccccaccatatttgttgtcaccataaatgaatttctcaacttcaccggtgaacaggtttacttttgcaaaaccagaaacttttggccatggttcagcgatagccaaataagcatactctgttttccttccgagtttgtttcggttcaccattccagcttctaaattcacttgttcatccgggttttcgattatggattttcttgttgatttccctgttttcaaatttgagacggattttcggataaaacactcttttagcccttcatcacatttcattgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="123570" stop="124923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123870" g_stop="124623" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E556788" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123870" e_stop="124623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTCCTATAATAAGGTATATATACTCTCTCATGCACAATCAAATGTGAAAGAATCACCAGAAAAAAACCAGCTGAGCTCCCATTTTCTAACTACATCCAAGCTACTAACTGGTTCTCTGAGAATCTCTCACACTATATAAACAAAGAAAAAAGATGTAGAAATAATCAAAGAAACGAACTCCATTAAAGAGGAATATTCCGGGGACGTATATTCTAAACCATCCCTCTGGTAAATTTTCCTCAGTAATAGTCACAATCATGCCTGATTTGCCAAATCATTGGCGTTTATGAATGTTCCATGAAATCCATAAGGAACTCTTGATGGAAGCTTCACAGTTGCCTCCAACTTCAAACTCATTGCGTTAACAATTTGCAGTTCTGATTTCCATTCTTTCTCATCGTGAACGAAAGCTAAAATATAACCATCGTCTTCTTCCTTGCTGTTGGGGTCTCTTGGTAAAAAAAGAGGTTCCCCACCATATTTGTTGTCACCATAAATGAATTTCTCAACTTCACCGGTGAACAGGTTTACTTTTGCAAAACCAGAAACTTTTGGCCATGGTTCAGCGATAGCCAAATAAGCATACTCTGTTTTCCTTCCGAGTTTGTTTCGGTTCACCATTCCAGCTTCTAAATTCACTTGTTCATCCGGGTTTTCGATTATGGATTTTCTTGTTGATTTCCCTGTTTTCAAA-TTGAGACGGA-TTTCGGATAAAACACTC-TTTAGCCCTTCATCACA-TTCATTGAAAA</genome_strand>
        <mrna_strand>TTGTATTCCTATAATAAGGTATATATACTCTCTCATGCACAATCAAATGTGAAAGAATCACCAGAAAAAAACCAGCTGAGCTCCCATTTTCTAACTACATCCAAGCTACTAACTGGTTCTCTGAGAATCTCTCACACTATATAAACAAAGAAAAAAGATGTAGAAATAATCAAAGAAACGAACTCCATTAAAGAGGAATATTCCGGGGACGTATATTCTAAACCATCCCTCTGGTAAATTTTCCTCAGTAATAGTCACAATCATGCCTGATTTGCCAAATCATTGGCGTTTATGAATGTTCCATGAAATCCATAAGGAACTCTTGATGGAAGCTTCACAGTTGCCTCCAACTTCAAACTCATTGCGTTAACAATTTGCAGTTCTGATTTCCATTCTTTCTCATCGTGAACGAAAGCTAAAATATAACCATCGTCTTCTTCCTTGCTGTTGGGGTCTCTTGGTAAAAAAAGAGGTTCCCCACCATATTTGTTGTCACCATAAATGAATTTCTCAACTTCACCGGTGAACAGGTTTACTTTTGCAAAACCAGAAACTTTTGGCCATGGTTCAGCGATAGCCAAATAAGCATACTCTGTTTTCCTTCCGAGTTTGTTTCGGTTCACCATTCCAGCTTCTAAATTCACTTGTTCATCCGGGTTTTCGATTATGGATTTTCTTGTTGATTTCCCTGTTTTCAAATTTGAGACGGATTTTCGGATAAAACACTCTTTTAGCCCTTCATCACATTTCATTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322227" ref_strand="+" ref_description="SGN-E322227 [cTOB-24-B14]">
      <seq>ttttatccgaaatccgtctcaatttgaaaacagggaaatcaacaagaaaatccataatcgaaaacccggatgaacaagtgaatttagaagctggaatggtgaaccgaaacaaactcggaaggaaaacagagtatgcttatttggctatcgctgaaccatggccaaaagtttctggttttgcaaaagtaaacctgttcaccggtgaagttgagaaattcatttatggtgacaacaaatatggtggggaacctctttttttaccaagagaccccaacagcaaggaagaagacgatggttatattttagctttcgttcacgatgagaaagaatggaaatcagaactgcaaattgttaacgcaatgagtttgaagttggaggcaactgtgaagcttccatcaagagttccttatggatttcatggaacattcataaacgccaatgatttggcaaatcaggcatgattgtgactattactgaggaaaatttaccagagggatggtttagaatatacgtccccggaatattcctctttaatggagttcgtttctttgattatttctacatcttttttctttgtttatatagtgtgagagattctcagagaaccagttagtagcttggatgtagttagaaaatgggagctcagctggtttttttctggtgattctttcacatttgattgtgcatgagagagtatatataccttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="124890" stop="123581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124590" g_stop="123881" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E322227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124590" e_stop="123881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACCATGGCCAAAAGTTTCTGGTTTTGCAAAAGTAAACCTGTTCACCGGTGAAGTTGAGAAATTCATTTATGGTGACAACAAATATGGTGGGGAACCTCTTTTTTTACCAAGAGACCCCAACAGCAAGGAAGAAGACGATGGTTATATTTTAGCTTTCGTTCACGATGAGAAAGAATGGAAATCAGAACTGCAAATTGTTAACGCAATGAGTTTGAAGTTGGAGGCAACTGTGAAGCTTCCATCAAGAGTTCCTTATGGATTTCATGGAACATTCATAAACGCCAATGATTTGGCAAATCAGGCATGATTGTGACTATTACTGAGGAAAATTTACCAGAGGGATGGTTTAGAATATACGTCCCCGGAATATTCCTCTTTAATGGAGTTCGTTTCTTTGATTATTTCTACATCTTTTTTCTTTGTTTATATAGTGTGAGAGATTCTCAGAGAACCAGTTAGTAGCTTGGATGTAGTTAGAAAATGGGAGCTCAGCTGGTTTTTTTCTGGTGATTCTTTCACATTTGATTGTGCATGAGAGAGTATATATACCTTATTA</genome_strand>
        <mrna_strand>TTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACCATGGCCAAAAGTTTCTGGTTTTGCAAAAGTAAACCTGTTCACCGGTGAAGTTGAGAAATTCATTTATGGTGACAACAAATATGGTGGGGAACCTCTTTTTTTACCAAGAGACCCCAACAGCAAGGAAGAAGACGATGGTTATATTTTAGCTTTCGTTCACGATGAGAAAGAATGGAAATCAGAACTGCAAATTGTTAACGCAATGAGTTTGAAGTTGGAGGCAACTGTGAAGCTTCCATCAAGAGTTCCTTATGGATTTCATGGAACATTCATAAACGCCAATGATTTGGCAAATCAGGCATGATTGTGACTATTACTGAGGAAAATTTACCAGAGGGATGGTTTAGAATATACGTCCCCGGAATATTCCTCTTTAATGGAGTTCGTTTCTTTGATTATTTCTACATCTTTTTTCTTTGTTTATATAGTGTGAGAGATTCTCAGAGAACCAGTTAGTAGCTTGGATGTAGTTAGAAAATGGGAGCTCAGCTGGTTTTTTTCTGGTGATTCTTTCACATTTGATTGTGCATGAGAGAGTATATATACCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257540" ref_strand="+" ref_description="SGN-E257540 [cLEG-45-O23]">
      <seq>ctcgacccagtttccggtgagctatttgctcttagctacgatgtgattcagaagccatacctcaagtacttcagattttcaaaaaatggggaaaaatcaaatgatgttgaaattccagttgaagacccaacaatgatgcatgatttcgcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttacgacaagaacaaagtttcccgatttggtattctggataagtacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgacaccaccagactccattttcaatgaatgtgatgaagggctaaagagtgttttatccgaaatccgtctcaatttgaaaacagggaaatcaacaagaaaatccataatcgaaaacccggatgaacaagtgaatttagaagctggaatggtgaaccgaaacaaactcggaaggaaaacagagtatgcttatttggctatcgctgaaccatggccaaaagtttctggttttgcaaaagtaaacctgttcaccggtgaagttgagaaattcatttatggtgacaacaaatatggtggggaacctctttttttacaagagaaccccacagcaaggaagaagacgatggttatattttagctttcgttcacgatgagaaagatgggaatcagaactgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125335" stop="123942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125035" g_stop="124242" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="792" r_length="792" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E257540" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125035" e_stop="124242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACCATGGCCAAAAGTTTCTGGTTTTGCAAAAGTAAACCTGTTCACCGGTGAAGTTGAGAAATTCATTTATGGTGACAACAAATATGGTGGGGAACCTCTTTTTTTACCAAGAGACCCCAACAGCAAGGAAGAAGACGATGGTTATATTTTAGCTTTCGTTCACGATGAGAAAGAATGGAAATCAGAACTGCAAAT</genome_strand>
        <mrna_strand>CTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACCATGGCCAAAAGTTTCTGGTTTTGCAAAAGTAAACCTGTTCACCGGTGAAGTTGAGAAATTCATTTATGGTGACAACAAATATGGTGGGGAACCTCTTTTTTTA-CAAGAGAACCCCACAGCAAGGAAGAAGACGATGGTTATATTTTAGCTTTCGTTCACGATGAGAAAG-ATGGGAATCAGAACTGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555946" ref_strand="+" ref_description="SGN-E555946 [cTSD-1-O21]">
      <seq>ttgcatttctgattacgtttctttctcatcgtgaactaaagctaagggggggccctcgtcttcttccttgctgttggggtctcttggtaaaaaaagaggttccccttcatatatgttgtcaccataaatgaatttctcaacttcaccggtgaacaggtttacttttgcaaaaccagaaacttttggccatggttcagcgatagccaaataagcatactctgttttccttccgagtttgtttcggttcaccattccagcttctaaattcacttgttcatccgggttttcgattatggattttcttgttgatttccctgttttcaaattgagacggatttcggataaaacactctttagcccttcatcacattcattgaaaatggagtctggtggtgtcatacatgaaccaattacaacgatttcatctgtttctgcttcttcccaagcattccagaggtggaaacagaaacatcaggtacttcaacccatttcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="+" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="123944" stop="125041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124244" g_stop="124741" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="+" ref_id="SGN-E555946" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124244" e_stop="124741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTTCTGATTTCCATTCTTTCTCATCGTGAACGAAAGCTAAAATATAACCATCGTCTTCTTCCTTGCTGTTGGGGTCTCTTGGTAAAAAAAGAGGTTCCCCACCATATTTGTTGTCACCATAAATGAATTTCTCAACTTCACCGGTGAACAGGTTTACTTTTGCAAAACCAGAAACTTTTGGCCATGGTTCAGCGATAGCCAAATAAGCATACTCTGTTTTCCTTCCGAGTTTGTTTCGGTTCACCATTCCAGCTTCTAAATTCACTTGTTCATCCGGGTTTTCGATTATGGATTTTCTTGTTGATTTCCCTGTTTTCAAATTGAGACGGATTTCGGATAAAACACTCTTTAGCCCTTCATCACATTCATTGAAAATGGAGTCTGGTGGTGTCATACATGAACCAATTACAACGATTTCATCTGTTTCTGCTTCTTCCCAAGCATTCCAGAGGTGGAAACAGAAACAATCAGGTACTTCAACCCATTTCAAATC</genome_strand>
        <mrna_strand>TTGCATTTCTGATTACGTTTCTTTCTCATCGTGAACTAAAGCTAAGGGGGGGCCCTCGTCTTCTTCCTTGCTGTTGGGGTCTCTTGGTAAAAAAAGAGGTTCCCCTTCATATATGTTGTCACCATAAATGAATTTCTCAACTTCACCGGTGAACAGGTTTACTTTTGCAAAACCAGAAACTTTTGGCCATGGTTCAGCGATAGCCAAATAAGCATACTCTGTTTTCCTTCCGAGTTTGTTTCGGTTCACCATTCCAGCTTCTAAATTCACTTGTTCATCCGGGTTTTCGATTATGGATTTTCTTGTTGATTTCCCTGTTTTCAAATTGAGACGGATTTCGGATAAAACACTCTTTAGCCCTTCATCACATTCATTGAAAATGGAGTCTGGTGGTGTCATACATGAACCAATTACAACGATTTCATCTGTTTCTGCTTCTTCCCAAGCATTCCAGAGGTGGAAACAGAAAC-ATCAGGTACTTCAACCCATTTCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306647" ref_strand="+" ref_description="SGN-E306647 [cLEY-19-J11]">
      <seq>aaaaatcaaatgttgttgaaattttttgttgaagacccaacaatgatgcatgattgggcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttacgacaagaacaaagtttcccgatttggtattctggataagtacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgacaccaccagactccattttcaatgaatgtgatgaagggctaaagagtgttttatccgaaatccgtctcaatttgaaaacagggaaatcaacaagaaaattcataatcgaaaaccctgatgaacaagtgaatttagaagctggaatggtgaaccgaaacaaactcggaaggaaaacagagtatgcttatttggctatcgctgaaccatggccaaaagtttctggttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125218" stop="124110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124944" g_stop="124410" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E306647" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124944" e_stop="124410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCAAATGATGTTGAAA-TTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACCATGGCCAAAAGTTTCTGGTTTTGC</genome_strand>
        <mrna_strand>AAAAATCAAATGTTGTTGAAATTTTTTGTTGAAGACCCAACAATGATGCATGATTGGGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATTCATAATCGAAAACCCTGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACCATGGCCAAAAGTTTCTGGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269371" ref_strand="+" ref_description="SGN-E269371 [cLEM-18-H11]">
      <seq>ccatttgaagacccatttatgatgcatgatttcccaattactgaggaggtgcgtcttcattcctgatcaacaaatcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttactacaagaacaaagtttcccgatttggtattctggataactacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgacaccaccagactccattttcaatgaatgtgatgaagggctaaagagtgttttatccgaaatccgtctcaatttgaaaacagggaaatcaacaagaaaatccattatcgaacacccggatgaacaagtgaatttataagctggaatggtgaacccaaacaaactccgaaggaaaacagagtatgcttatttggctatcgctgaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125203" stop="124133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124921" g_stop="124433" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E269371" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124921" e_stop="124433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGA-GAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACCA</genome_strand>
        <mrna_strand>CCATTTGAAGACCCATTTATGATGCATGATTTCCCAATTACTGAGGAGGTGCGTCTTCATTCCTGATCAACAAATCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACTACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAACTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATTATCGAACACCCGGATGAACAAGTGAATTTATAAGCTGGAATGGTGAACCCAAACAAACTCCGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261237" ref_strand="+" ref_description="SGN-E261237 [cLEG-65-N24]">
      <seq>aaacgccggtttagtctatttcaataaccgattacttgctatgtctgaagatgatttgccttaccatgtaaaggtaacacccaccggcgatcttaaaacagagggtcgattcgatttcgacggccagctaaaatccaccatgatagctcacccaaagctcgacccagtttccggtgagctatttgctcttagctacgatgtgattcagaagccatacctcaagtacttcagattttcaaaaaatggggaaaaatcaaatgatgttgaaattccagttgaagacccaacaatgatgcatgatttcgcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttacgacaagaacaaagtttcccgatttggtattctggataagtacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgacaccaccagactccattttcaatgaatgtgatgaagggctaaagagtgttttatccgaaatccgtctcaatttgaaaacagggaaatcaacaagaaaatccataatcgaaaacccggatgaacaagtgaatttagaagctggaatggtgaaccgaaaacaactcggaaggaaaacagagtatgcttatttggctatcgctgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125492" stop="124134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125192" g_stop="124434" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E261237" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125192" e_stop="124434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACC</genome_strand>
        <mrna_strand>AAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAAACAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257058" ref_strand="+" ref_description="SGN-E257058 [cLEG-44-B9]">
      <seq>aaagctcgacccagtttccggtgagctatttgctcttagctacgatgtgattcagaagccatacctcaagtacttcagattttcaaaaaatggggaaaaatcaaatgatgttgaaattccagttgaagacccaacaatgatgcatgatttcgcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttacgacaagaacaaagtttcccgatttggtattctggataagtacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgacaccaccagactccattttcaatgaatgtgatgaagggctaaagagtgttttatccgaaatccgtctcaatttgaaaacagggaaatcaacaagaaaatccataatcgaaaacccggatgaacaagtgaatttagaagctggaatggtgaaccgaaacaaactcggaaggaaaacagagtatgcttatttggctatcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125339" stop="124138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125039" g_stop="124438" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E257058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125039" e_stop="124438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTG</genome_strand>
        <mrna_strand>AAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256739" ref_strand="+" ref_description="SGN-E256739 [cLEG-40-L2]">
      <seq>aaagctcgacccagtttccggtgagctatttgctcttagctacgatgtgattcagaagccatacctcaagtacttcagattttcaaaaaatggggaaaaatcaaatgatgttgaaattccagttgaagacccaacaatgatgcatgatttcgcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttacgacaagaacaaagtttcccgatttggtattctggataagtacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgacaccaccagactccattttcaatgaatgtgatgaagggctaaagagtgttttatccgaaatccgtctcaatttgaaaacagggaaatcaacaagaaaatccataatcgaaaacccggatgaacaagtgaatttagaagctggaatggtgaaccgaaacaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125339" stop="124175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125039" g_stop="124475" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E256739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125039" e_stop="124475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTC</genome_strand>
        <mrna_strand>AAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264881" ref_strand="+" ref_description="SGN-E264881 [cLEG-71-H1]">
      <seq>aaagctcgacccagtttccggtgagctatttgctcttagctacgatgtgattcagaagccatacctcaagtacttcagattttcaaaaaatggggaaaaatcaaatgatgttgaaattccagttgaagacccaacaatgatgcatgatttcgcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttacgacaagaacaaagtttcccgatttggtattctggataagtacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgacaccaccagactccattttcaatgaatgtgatgaanggctaaagagtgttttatccgaaatccgtctncattttgaaacagggaaatcaacaagaaaatccataatcgaaaaaccgggatgaacnagtgaatttagaagctggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125339" stop="124193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125039" g_stop="124493" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E264881" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125039" e_stop="124493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCG-AAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATG</genome_strand>
        <mrna_strand>AAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAANGGCTAAAGAGTGTTTTATCCGAAATCCGTCTNCATTTTGAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAAACCGGGATGAACNAGTGAATTTAGAAGCTGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253513" ref_strand="+" ref_description="SGN-E253513 [cLEG-24-E20]">
      <seq>atttgctcttagctacgatgtgattcagaagccatacctcaagtacttcagattttcaaaaaatggggaaaaatcaaatgatgttgaaattccagttgaagacccaacaatgatgcatgatttcgcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttacgacaagaacaaagtttcccgatttggtattctggataagtacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgacaccaccagactccattttcaatgaatgtgatgaagggctaaagagtgttttatccgaaatccgtctcaatttgaaaacagggaaatcaacaagaaaatccataatcgaaaacccggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125312" stop="124219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125012" g_stop="124519" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E253513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125012" e_stop="124519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATG</genome_strand>
        <mrna_strand>ATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263636" ref_strand="+" ref_description="SGN-E263636 [cLEG-60-N24]">
      <seq>aaacgccggtttagtctatttcaataaccgattacttgctatgtctgaagatgatttgccttaccatgtaaaggtaacacccaccggcgatcttaaaacagagggtcgattcgatttcgacggccagctaaaatccaccatgatagctcacccaaagctcgacccagtttccggtgagctatttgctcttagctacgatgtgattcagaagccatacctcaagtacttcagattttcaaaaaatggggaaaaatcaaatgatgttgaaattccagttgaagacccaacaatgatgcatgatttcgcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttacgacaagaacaaagtttcccgatttggtattctggataagtacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgacaccaccagactccattttcaatgaatgtgatgaagggctaaagagtgttttatccgaaatccgtctcaattttgaaacagggaaatcaacaagaaaatccataatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125492" stop="124231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125192" g_stop="124531" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E263636" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125192" e_stop="124531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCG</genome_strand>
        <mrna_strand>AAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTTGAAACAGGGAAATCAACAAGAAAATCCATAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250154" ref_strand="+" ref_description="SGN-E250154 [cLEG-11-G7]">
      <seq>gatcttaaaacagagggtcgattcgatttcgacggccagctaaaatccaccatgatagctcacccaaagctcgacccagtttccggtgagctatttgctcttagctacgatgtgattcagaagccatacctcaagtacttcagattttcaaaaaatggggaaaaatcaaatgatgttgaaattccagttgaagacccaacaatgatgcatgatttcgcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttacgacaagaacaaagtttcccgatttggtattctggataagtacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgacaccaccagactccattttcaatgaatgtgatgaagggctaaagagtgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125404" stop="124286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125104" g_stop="124586" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E250154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125104" e_stop="124586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTA</genome_strand>
        <mrna_strand>GATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246029" ref_strand="+" ref_description="SGN-E246029 [cLEF-54-E2]">
      <seq>tcgtgccgaattcggcacgaggttntacgctcgtgggctcttcggacttgttgatcacagtaaaggaactggtgttgcaaacgccggtttagtctatttcaataaccgattacttgctatgtctgaagatgatttgccttaccatgtaaaggtaacacccaccggcgatcttaaaacagagggtcgattcgatttcgacggccagctaaaatccaccatgatagctcacccaaagctcgacccagtttccggtgagctatttgctcttagctacgatgtgattcagaagccatacctcaagtacttcagattttcaaaaaatggggaaaaatcaaatgatgttgaaattccagttgaagacccaacaatgatgcatgatttcgcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagatgtctgaaatgatccgtggaggttcaccggtggtttacgacaagaacaaagtttcccgatttggtattctggataagtacgcgaaagatgggtctgatttgaaatgggttgaagtacctgattgtttctgtttccacctctggaatgcttgggaagaagcagaaacagatgaaatcgttgtaattggttcatgtatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125554" stop="124337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125249" g_stop="124637" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="634" r_length="613" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E246029" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125249" e_stop="124637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACA</genome_strand>
        <mrna_strand>GTTNTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246907" ref_strand="+" ref_description="SGN-E246907 [cLEF-41-P15]">
      <seq>tcgtgccgaattcggcacgaggttttacgctcgtgggctcttcggacttgttgatcacagtaaaggaactggtgttgcaaacgccggtttagtctatttcaataaccgattacttgctatgtctgaagatgatttgccttaccatgtaaaggtaacacccaccggcgatcttaaaacagagggtcgattcgatttcgacggccagctaaaatccaccatgatagctcacccaaagctcgacccagtttccggtgagctatttgctcttagctacgatgtgattcagaagccatacctcaagtacttcagattttcaaaaaatggggaaaaatcaaatgatgttgaaattccagttgaagacccaacaatgatgcatgatttcgcaattactgagaacttcgtcgtcattcctgatcaacaagtcgttttcaagaatgtctgaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125554" stop="124524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125249" g_stop="124824" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="448" r_length="427" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E246907" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125249" e_stop="124824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAG-ATGTCTGAAATGAT</genome_strand>
        <mrna_strand>GTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGAATGTCTGAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255984" ref_strand="+" ref_description="SGN-E255984 [cLEG-35-K8]">
      <seq>aatacccaaatgtgttcaaggcgtttacgttcgaaacggagctaaccctctttttgaaccaaccgccggacaccatttcttcgacggcgacggtatggttcacgccgttcaattcaaaaatgggtcggctagttacgcttgccgtttcactgaaacagagaggcttgttcaagaaaaagctttgggtcgccctgttttccctaaagccattggtgaattacatggtcactctggaattgcaaggcttatgctgttttacgctcgtgggctcttcggacttgttgatcacagtaaaggaactggtgttgcaaacgccggtttagtctatttcaataaccgattacttgctatgtctgaagatgatttgccttaccatgtaaaggtaacacccaccggcgatcttaaaacagagggtcgattcgatttcgacggccagctaaaatccaccatgatagctcacccaaagctcgacccagtttccggtgagctatttgctcttagctacgatgtgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125801" stop="124687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125501" g_stop="124987" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E255984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125501" e_stop="124987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTC</genome_strand>
        <mrna_strand>AATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246368" ref_strand="+" ref_description="SGN-E246368 [cLEF-52-I16]">
      <seq>tctttttgaaccaactgccggatacctatttcttcgagccgcgacggtatggttcaccgcccgttcaattcaaaaatgggtcggctagttaccccttgccgtttcactgaaaccagagaggcttgttcaagaaaaagctttgggtcgccctgttttccctaaagccattggtgaattacatggtcactctggaattgcaaggcttatgctgttttacgctcgtgggctcttcggacttgttgatcacagtaaaggaactggtgttgcaaaccccggtttagtctatttcaataaccgattacttgctatgtctgaagatgattcgccttaccatgtaaaggtaacacccaccggcgatcttaaaacagagggtcgattctatttcgacggccagctaaaatccaccatgatagctcacccaaagctcgacccagtttccggtgagctatttgctcttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125753" stop="124700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125453" g_stop="125000" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E246368" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125453" e_stop="125000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTGAACCAACCGCCGGACACC-ATTTCTTCGA-CGGCGACGGTATGGTTCA-CG-CCGTTCAATTCAAAAATGGGTCGGCTAGTTA-CGCTTGCCGTTTCACTGAAA-CAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGC</genome_strand>
        <mrna_strand>TCTTTTTGAACCAACTGCCGGATACCTATTTCTTCGAGCCGCGACGGTATGGTTCACCGCCCGTTCAATTCAAAAATGGGTCGGCTAGTTACCCCTTGCCGTTTCACTGAAACCAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACCCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTCGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCTATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268924" ref_strand="+" ref_description="SGN-E268924 [cLEM-4-F10]">
      <seq>ttcttcaacttccaagtggaatttagtgcagaaagcagcagcaatggctttagatgctgtagaaagtgctttaactaaacatgaacttgaacaccctttgccgaaaacagccgacccacgagtccagatttctgggaattttgctccggtaccggaaaatccagtctgtcaatctcttccggtcaccggaaaaatacccaaatgtgttcaaggcgtttacgttcgaaacggagctaaccctctttttgaaccaaccgccggacaccatttcttcgacggcgacggtatggttcacgccgttcaattcaaaaatgggtcggctagttacgcttgccgtttcactgaaacagagaggcttgttcaagaaaaagctttgggtcgccctgttttccctaaagccattggtgaattacatggtcactctggaattgcaaggcttatgctgttttacgctcgtgggctcttcggacttgttgatcacagtaaaggaactggtgttgcaaacgccggtttagtctatttcaataaccgattacttgctatgtctgaagatgatttgccttaccatgtaaaggtaacacccaccggcgatcttaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="125993" stop="124794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125693" g_stop="125094" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E268924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125693" e_stop="125094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAACTTCCAAGTGGAATTTAGTGCAGAAAGCAGCAGCAATGGCTTTAGATGCTGTAGAAAGTGCTTTAACTAAACATGAACTTGAACACCCTTTGCCGAAAACAGCCGACCCACGAGTCCAGATTTCTGGGAATTTTGCTCCGGTACCGGAAAATCCAGTCTGTCAATCTCTTCCGGTCACCGGAAAAATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAAC</genome_strand>
        <mrna_strand>TTCTTCAACTTCCAAGTGGAATTTAGTGCAGAAAGCAGCAGCAATGGCTTTAGATGCTGTAGAAAGTGCTTTAACTAAACATGAACTTGAACACCCTTTGCCGAAAACAGCCGACCCACGAGTCCAGATTTCTGGGAATTTTGCTCCGGTACCGGAAAATCCAGTCTGTCAATCTCTTCCGGTCACCGGAAAAATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271094" ref_strand="+" ref_description="SGN-E271094 [cLEM-22-K17]">
      <seq>aaaacaagaaaacaacaactcctcttcttcttcaacttccaagtggaatttagtgcagaaagcagcagcaatggctttagatgctgtagaaagtgctttaactaaacatgaacttgaacaccctttgccgaaaacagccgacccacgagtccagatttctgggaattttgctccggtaccggaaaatccagtctgtcaatctcttccggtcaccggaaaaatacccaaatgtgttcaaggcgtttacgttcgaaacggagctaaccctctttttgaaccaaccgccggacaccatttcttcgacggcgacggtatggttcacgccgttcaattcaaaaatgggtcggctagttacgcttgccgtttcactgaaacagagaggcttgttcaagaaaaagctttgggtcgccctgttttccctaaagccattggtgaattacatggtcactctggaattgcaaggcttatgctgttttacgctcgtgggctcttcggacttgttgatcacagtaaaggaactggtgttgcaaacgccggtttagtctatttcaataaccgattacttgctatgtctgaagatgatttgccttaccatgtaaaggtaacacccaccggcgatcttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="126020" stop="124795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125720" g_stop="125095" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E271094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125720" e_stop="125095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAGAAAACAACAACTCCTCTTCTTCTTCAACTTCCAAGTGGAATTTAGTGCAGAAAGCAGCAGCAATGGCTTTAGATGCTGTAGAAAGTGCTTTAACTAAACATGAACTTGAACACCCTTTGCCGAAAACAGCCGACCCACGAGTCCAGATTTCTGGGAATTTTGCTCCGGTACCGGAAAATCCAGTCTGTCAATCTCTTCCGGTCACCGGAAAAATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAA</genome_strand>
        <mrna_strand>AAAACAAGAAAACAACAACTCCTCTTCTTCTTCAACTTCCAAGTGGAATTTAGTGCAGAAAGCAGCAGCAATGGCTTTAGATGCTGTAGAAAGTGCTTTAACTAAACATGAACTTGAACACCCTTTGCCGAAAACAGCCGACCCACGAGTCCAGATTTCTGGGAATTTTGCTCCGGTACCGGAAAATCCAGTCTGTCAATCTCTTCCGGTCACCGGAAAAATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299465" ref_strand="+" ref_description="SGN-E299465 [cLET-43-B10]">
      <seq>aggagttgctgctttcttcttcaacttccaagaggaatttattgcagaaagcagcagcaatggctttagatgctgtataaagtgctttaactaaacatgaacttgaacaccctttgccgaaaacagccgacccacgagtccagatttctgggaattttgctccggtaccggaaaatccagtctgtcaatctcttccggtcaccggaaaaatacccaaatgtgttcaaggcgtttacgttcgaaacggagctaaccctctttttgaaccaaccgccggacaccatttcttcgacggcgacggtatggttcacgccgttcaattcaaaaatgggtcggctagttacgcttgccgtttcactgaaacagagaggcttgttcaagaaaaagctttgggtcgccctgttttccctaaagccattggtgaattacatggtcactctggaattgcaaggcttatgctgttttacgctcgtgggctcttcggacttgttgatcacagtaaaggaactggtgttgcaaacgccggtttagtctatttcaataaccgattacttgctatgtctgaagatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="126002" stop="124835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125710" g_stop="125135" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E299465" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125710" e_stop="125135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACTCCTCTTCTTCTTCAACTTCCAAGTGGAATTTAGTGCAGAAAGCAGCAGCAATGGCTTTAGATGCTGTAGAAAGTGCTTTAACTAAACATGAACTTGAACACCCTTTGCCGAAAACAGCCGACCCACGAGTCCAGATTTCTGGGAATTTTGCTCCGGTACCGGAAAATCCAGTCTGTCAATCTCTTCCGGTCACCGGAAAAATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTG</genome_strand>
        <mrna_strand>AGGAGTTGCTGCT-TTCTTCTTCAACTTCCAAGAGGAATTTATTGCAGAAAGCAGCAGCAATGGCTTTAGATGCTGTATAAAGTGCTTTAACTAAACATGAACTTGAACACCCTTTGCCGAAAACAGCCGACCCACGAGTCCAGATTTCTGGGAATTTTGCTCCGGTACCGGAAAATCCAGTCTGTCAATCTCTTCCGGTCACCGGAAAAATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271982" ref_strand="+" ref_description="SGN-E271982 [cLEM-8-I6]">
      <seq>aacaacttttcttcttcttcaacttccaaggggaatttagggcagaaagcagcagcaatggctttagatgctgtagaaagtgctttaactaaacatgaacttgaacaccctttgccgaaaacagccgacccacgagtccagatttctgggaattttgctccggtaccggaaaatccagtctgtcaatctcttccggtcaccggaaaaatacccaaatgtgttcaaggcgtttacgttcgaaacggagctaaccctctttttgaaccaaccgccggacaccatttcttcgacggcgacggtatggttcacgccgttcaattcaaaaatgggtcggctagttacgcttgccgtttcactgaaacagagaggcttgttcaagaaaaagctttgggtcgccctgttttccctaaagccattggtgaattacatggtcactctggaattgcaaggcttatgctgttttacgctcgtgggctcttcggacttgttgatcacagtcaaggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0220H02-AUWyi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0220H02.1" temp_strand="-" temp_description="C07HBa0220H02.1  AC212638.1 htgs_phase:1 submitted_to_sgn_as:gi|158262133|gb|AC212638.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0220H02, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces">
        <position start="126007" stop="124901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125707" g_stop="125201" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0220H02.1" gen_strand="-" ref_id="SGN-E271982" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0220H02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125707" e_stop="125201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTCCTCTTCTTCTTCAACTTCCAAGTGGAATTTAGTGCAGAAAGCAGCAGCAATGGCTTTAGATGCTGTAGAAAGTGCTTTAACTAAACATGAACTTGAACACCCTTTGCCGAAAACAGCCGACCCACGAGTCCAGATTTCTGGGAATTTTGCTCCGGTACCGGAAAATCCAGTCTGTCAATCTCTTCCGGTCACCGGAAAAATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACT</genome_strand>
        <mrna_strand>AACAACTTTTCTTCTTCTTCAACTTCCAAGGGGAATTTAGGGCAGAAAGCAGCAGCAATGGCTTTAGATGCTGTAGAAAGTGCTTTAACTAAACATGAACTTGAACACCCTTTGCCGAAAACAGCCGACCCACGAGTCCAGATTTCTGGGAATTTTGCTCCGGTACCGGAAAATCCAGTCTGTCAATCTCTTCCGGTCACCGGAAAAATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTCAAGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>316</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1347" PGL_stop="5"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1347" e_stop="990"/>
            <exon e_start="389" e_stop="5"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="0.988"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="1347" e_stop="990" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="989" i_stop="390" i_length="600"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="389" e_stop="5" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1347" stop="990"/>
              <exon start="389" stop="98"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1347" stop="1119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1344" stop="990"/>
              <exon start="389" stop="202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1340" stop="990"/>
              <exon start="389" stop="5"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1340" stop="990"/>
              <exon start="389" stop="198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1328" stop="990"/>
              <exon start="389" stop="313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1324" stop="990"/>
              <exon start="389" stop="203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1299" stop="990"/>
              <exon start="389" stop="57"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1296" stop="990"/>
              <exon start="389" stop="47"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1296" stop="990"/>
              <exon start="389" stop="50"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1280" stop="990"/>
              <exon start="389" stop="350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTCTGCCAAATCTACTTACTACAAATTTTCAGCAAAAAAATGGCTGATGAAGTGTCCNTTCTGGGAACTTATGTGAGTATGTTTGCTGTGAGGGTAAAAATTGCCCTGGCTGAAAAGGGGATCCCATATGAGTACAAAGAAGAGAACTTGGTGAACAAAAGTCCTTTACTCTTACAAATGAATCCAATTCACAAGAAAATCCCAGTGTTGATCCATAATGGAAAACCAATATGTGAGTCACTCATAATTGTTGAGTACATAGATGAAGTTTGGAATGACAAATCACCTTTGTTGCCTAGTGATCCTTATAAGAGAGCTCAAGCTAGGTTTTGGGCTGATTATGTTGACAAAAAG : ATTTATGATGGTGGAAAGAAAATTTGGACAACAAAAGTGGAGGAACAAGAAGCAGCTAATAAAGAATTCATTGAGTGTTTGAAGGTGTTGGAAGGGGAATTGGGAGACAAGCCATACTTCGATGGAGAAAGTTTTGGTTTTGTGGATTTGGCACTCATTCCTTACTATAGCTGGTTCCCTGCTTATGAAAAATTTGGCAAATTTAGTATTGAACCAGAGTGTCCTAAGTTTGTGGCTTGGGCCAACAGGTGTATGCAAAAGGAGAATGTCTCTAAGTATCTTTCTGATCCTGACAAAATCTATGATTTTGTTGTAATGTTGAGACAGAGGATTGGCATTGCCTAAAAGAGACGGATCTAGAGCGGGTTCTGCAGGTTCAACTGGA</gDNA_template>
            <first_frame> Y  F  L  P  N  L  L  T  T  N  F  Q  Q  K  N  G  *  *  S  V  L  S  G  N  L  C  E  Y  V  C  C  E  G  K  N  C  P  G  *  K  G  D  P  I  *  V  Q  R  R  E  L  G  E  Q  K  S  F  T  L  T  N  E  S  N  S  Q  E  N  P  S  V  D  P  *  W  K  T  N  M  *  V  T  H  N  C  *  V  H  R  *  S  L  E  *  Q  I  T  F  V  A  *  *  S  L  *  E  S  S  S  *  V  L  G  *  L  C  *  Q  K   : D  L  *  W  W  K  E  N  L  D  N  K  S  G  G  T  R  S  S  *  *  R  I  H  *  V  F  E  G  V  G  R  G  I  G  R  Q  A  I  L  R  W  R  K  F  W  F  C  G  F  G  T  H  S  L  L  *  L  V  P  C  L  *  K  I  W  Q  I  *  Y  *  T  R  V  S  *  V  C  G  L  G  Q  Q  V  Y  A  K  G  E  C  L  *  V  S  F  *  S  *  Q  N  L  *  F  C  C  N  V  E  T  E  D  W  H  C  L  K  E  T  D  L  E  R  V  L  Q  V  Q  L   </first_frame>
            <second_frame>  I  F  C  Q  I  Y  L  L  Q  I  F  S  K  K  M  A  D  E  V  S  F  L  G  T  Y  V  S  M  F  A  V  R  V  K  I  A  L  A  E  K  G  I  P  Y  E  Y  K  E  E  N  L  V  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  L  I  I  V  E  Y  I  D  E  V  W  N  D  K  S  P  L  L  P  S  D  P  Y  K  R  A  Q  A  R  F  W  A  D  Y  V  D  K  K  :  I  Y  D  G  G  K  K  I  W  T  T  K  V  E  E  Q  E  A  A  N  K  E  F  I  E  C  L  K  V  L  E  G  E  L  G  D  K  P  Y  F  D  G  E  S  F  G  F  V  D  L  A  L  I  P  Y  Y  S  W  F  P  A  Y  E  K  F  G  K  F  S  I  E  P  E  C  P  K  F  V  A  W  A  N  R  C  M  Q  K  E  N  V  S  K  Y  L  S  D  P  D  K  I  Y  D  F  V  V  M  L  R  Q  R  I  G  I  A  *  K  R  R  I  *  S  G  F  C  R  F  N  W  </second_frame>
            <third_frame>   F  S  A  K  S  T  Y  Y  K  F  S  A  K  K  W  L  M  K  C  P  F  W  E  L  M  *  V  C  L  L  *  G  *  K  L  P  W  L  K  R  G  S  H  M  S  T  K  K  R  T  W  *  T  K  V  L  Y  S  Y  K  *  I  Q  F  T  R  K  S  Q  C  *  S  I  M  E  N  Q  Y  V  S  H  S  *  L  L  S  T  *  M  K  F  G  M  T  N  H  L  C  C  L  V  I  L  I  R  E  L  K  L  G  F  G  L  I  M  L  T  K  R :   F  M  M  V  E  R  K  F  G  Q  Q  K  W  R  N  K  K  Q  L  I  K  N  S  L  S  V  *  R  C  W  K  G  N  W  E  T  S  H  T  S  M  E  K  V  L  V  L  W  I  W  H  S  F  L  T  I  A  G  S  L  L  M  K  N  L  A  N  L  V  L  N  Q  S  V  L  S  L  W  L  G  P  T  G  V  C  K  R  R  M  S  L  S  I  F  L  I  L  T  K  S  M  I  L  L  *  C  *  D  R  G  L  A  L  P  K  R  D  G  S  R  A  G  S  A  G  S  T  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1346" stop="990"/>
                    <exon start="389" stop="45"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFCQIYLLQIFSKKMADEVSFLGTYVSMFAVRVKIALAEKGIPYEYKEENLVNKSPLLLQMNPIHKKIPVLIHNGKPICESLIIVEYIDEVWNDKSPLLPSDPYKRAQARFWADYVDKKIYDGGKKIWTTKVEEQEAANKEFIECLKVLEGELGDKPYFDGESFGFVDLALIPYYSWFPAYEKFGKFSIEPECPKFVAWANRCMQKENVSKYLSDPDKIYDFVVMLRQRIGIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15351" PGL_stop="13539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15351" e_stop="14871"/>
            <exon e_start="14077" e_stop="13539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.983"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="15351" e_stop="14871" e_length="481"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14870" i_stop="14078" i_length="793"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="14077" e_stop="13539" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15351" stop="14871"/>
              <exon start="14077" stop="13740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15309" stop="14910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15309" stop="14915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15298" stop="14871"/>
              <exon start="14077" stop="13644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15280" stop="14871"/>
              <exon start="14077" stop="13640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15243" stop="14871"/>
              <exon start="14077" stop="13583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15243" stop="14871"/>
              <exon start="14077" stop="13586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15243" stop="14871"/>
              <exon start="14077" stop="13640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15243" stop="14871"/>
              <exon start="14077" stop="13642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15228" stop="14871"/>
              <exon start="14077" stop="13580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15227" stop="14871"/>
              <exon start="14077" stop="13586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15227" stop="14871"/>
              <exon start="14077" stop="13606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15226" stop="14871"/>
              <exon start="14077" stop="13861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15226" stop="14876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15224" stop="14871"/>
              <exon start="14077" stop="13868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15223" stop="14871"/>
              <exon start="14077" stop="13631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15223" stop="14871"/>
              <exon start="14077" stop="13749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15223" stop="14871"/>
              <exon start="14077" stop="13841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15218" stop="14871"/>
              <exon start="14077" stop="13591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15218" stop="14871"/>
              <exon start="14077" stop="13595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15218" stop="14871"/>
              <exon start="14077" stop="13888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15218" stop="14871"/>
              <exon start="14077" stop="13974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15217" stop="14871"/>
              <exon start="14077" stop="13590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15215" stop="14871"/>
              <exon start="14077" stop="13614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15215" stop="14871"/>
              <exon start="14077" stop="13891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15215" stop="14871"/>
              <exon start="14077" stop="13930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15213" stop="14871"/>
              <exon start="14077" stop="13656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15204" stop="14871"/>
              <exon start="14077" stop="13958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15179" stop="14871"/>
              <exon start="14077" stop="13794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15146" stop="14871"/>
              <exon start="14077" stop="13932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15135" stop="14871"/>
              <exon start="14077" stop="13539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15126" stop="14871"/>
              <exon start="14077" stop="13703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15115" stop="14871"/>
              <exon start="14077" stop="13679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15084" stop="14871"/>
              <exon start="14077" stop="13587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15045" stop="14871"/>
              <exon start="14077" stop="13588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15028" stop="14871"/>
              <exon start="14077" stop="13586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14927" stop="14871"/>
              <exon start="14077" stop="13699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14913" stop="14871"/>
              <exon start="14077" stop="13586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13788" stop="13586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347497" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGCTAACCTATTTTTATTTTTTTATATTTTGATGTTAAAGTTCTGGCTTGGCCAACTTAAGGCATCTACACCCCTATATATACTTCGTGTATGTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGTGATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGTGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGACAAGAAG : TTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAAGAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATATTGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTGGGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAAGCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGATTTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAAATGTTGGCTTTTGTGATGAGAAGTAATTACTTTTTTTTTATCTAACA</gDNA_template>
            <first_frame> I  A  N  L  F  L  F  F  Y  I  L  M  L  K  F  W  L  G  Q  L  K  A  S  T  P  L  Y  I  L  R  V  C  I  Y  N  K  Q  I  N  T  L  A  I  L  R  F  F  F  L  I  H  T  K  *  N  G  *  *  *  G  D  S  V  G  F  L  A  *  H  V  W  Y  E  A  K  D  C  T  C  *  E  R  D  *  I  *  V  Q  R  R  G  F  E  E  Q  K  S  S  A  F  A  D  E  S  Y  S  Q  E  N  P  C  F  D  S  *  W  Q  T  N  L  *  V  Y  H  W  S  *  V  Y  *  *  S  V  E  G  *  S  P  F  A  P  F  *  S  L  *  E  S  T  S  *  V  L  G  *  L  H  *  Q  E   : V  I  C  Y  R  K  Q  D  L  Y  S  N  G  R  R  T  R  G  R  *  E  R  F  R  R  N  P  *  S  V  G  G  S  T  W  R  E  A  L  L  W  R  R  *  L  W  F  W  G  Y  C  S  H  W  V  L  L  L  V  S  C  L  *  G  L  W  *  L  Q  H  *  G  *  V  P  K  P  C  G  L  G  Q  E  V  H  A  K  G  Q  C  G  *  N  F  A  *  P  T  *  D  H  *  V  C  K  N  S  *  G  K  A  W  T  *  I  N  K  H  M  H  I  I  V  V  L  K  K  G  T  S  F  C  L  Y  L  V  L  F  Q  D  L  K  C  L  F  G  Y  S  V  S  S  I  S  N  S  N  K  G  *  A  C  V  L  L  N  V  G  F  C  D  E  K  *  L  L  F  F  Y  L  T </first_frame>
            <second_frame>  L  L  T  Y  F  Y  F  F  I  F  *  C  *  S  S  G  L  A  N  L  R  H  L  H  P  Y  I  Y  F  V  Y  V  Y  T  T  S  K  S  I  L  W  Q  F  *  D  F  F  S  *  F  I  Q  N  K  M  A  N  D  E  V  I  L  L  D  F  W  P  S  M  Y  G  M  R  L  R  I  A  L  A  E  K  E  I  K  Y  E  Y  R  D  E  D  L  R  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  I  I  G  V  E  Y  I  D  E  V  W  K  D  K  A  P  L  L  P  S  D  P  Y  E  R  A  Q  A  R  F  W  A  D  Y  I  D  K  K  :  L  Y  A  T  G  S  K  I  Y  T  A  T  G  D  E  Q  E  A  G  K  K  D  F  V  E  I  L  K  V  L  E  G  A  L  G  E  K  P  Y  Y  G  G  D  N  F  G  F  G  D  I  A  L  I  G  F  Y  C  W  F  H  A  Y  E  V  Y  G  N  F  S  I  E  A  E  C  P  N  L  V  A  W  A  K  R  C  M  Q  R  D  S  V  A  K  T  L  P  D  Q  H  K  I  I  E  F  V  K  I  L  R  E  K  L  G  L  E  *  I  N  I  C  I  S  *  *  Y  *  R  K  A  L  H  S  A  F  I  L  C  C  F  K  I  *  N  V  C  L  V  I  V  *  V  L  F  L  I  V  I  K  D  K  L  V  S  C  *  M  L  A  F  V  M  R  S  N  Y  F  F  F  I  *   </second_frame>
            <third_frame>   C  *  P  I  F  I  F  L  Y  F  D  V  K  V  L  A  W  P  T  *  G  I  Y  T  P  I  Y  T  S  C  M  Y  I  Q  Q  A  N  Q  Y  F  G  N  F  E  I  F  F  L  N  S  Y  K  I  K  W  L  M  M  R  *  F  C  W  I  F  G  L  A  C  M  V  *  G  *  G  L  H  L  L  R  K  R  L  N  M  S  T  E  T  R  I  *  G  T  K  V  L  C  F  C  R  *  I  L  F  T  R  K  S  L  F  *  F  I  M  A  N  Q  F  V  S  L  S  L  E  L  S  I  L  M  K  C  G  R  I  K  P  L  C  S  L  L  I  L  M  R  E  H  K  L  G  F  G  L  I  T  L  T  R  S :   Y  M  L  Q  E  A  R  F  I  Q  Q  R  E  T  N  K  R  Q  V  R  K  I  S  *  K  S  L  K  C  W  R  E  H  L  E  R  S  L  I  M  E  E  I  T  L  V  L  G  I  L  L  S  L  G  S  T  A  G  F  M  L  M  R  F  M  V  T  S  A  L  R  L  S  A  Q  T  L  W  L  G  P  R  G  A  C  K  G  T  V  W  L  K  L  C  L  T  N  I  R  S  L  S  L  *  K  F  L  G  K  S  L  D  L  N  K  *  T  Y  A  Y  H  S  S  I  E  E  R  H  F  I  L  P  L  S  C  V  V  S  R  F  E  M  F  V  W  L  *  C  K  F  Y  F  *  *  *  *  R  I  S  L  C  L  V  K  C  W  L  L  *  *  E  V  I  T  F  F  L  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15203" stop="14871"/>
                    <exon start="14077" stop="13733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIQNKMANDEVILLDFWPSMYGMRLRIALAEKEIKYEYRDEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIGVEYIDEVWKDKAPLLPSDPYERAQARFWADYIDKKLYATGSKIYTATGDEQEAGKKDFVEILKVLEGALGEKPYYGGDNFGFGDIALIGFYCWFHAYEVYGNFSIEAECPNLVAWAKRCMQRDSVAKTLPDQHKIIEFVKILREKLGLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13609" PGL_stop="14071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13609" e_stop="14071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="13609" e_stop="14071" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13609" stop="14071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTACTATTAGAAATAGAACTTACACTATAACCAAACAAACATTTCAAATCTTGAAACAACACAAGATAAAGGCAGAATGAAGTGCCTTTCTTCAATACTACTATGATATGCATATGTTTATTTATTCAAGTCCAAGCTTTTCCCTAAGAATTTTTACAAACTCAATGATCTTATGTTGGTCAGGCAAAGTTTTAGCCACACTGTCCCTTTGCATGCACCTCTTGGCCCAAGCCACAAGGTTTGGGCACTCAGCCTCAATGCTGAAGTTACCATAAACCTCATAAGCATGAAACCAGCAGTAGAACCCAATGAGAGCAATATCCCCAAAACCAAAGTTATCTCCTCCATAATAAGGCTTCTCTCCAAGTGCTCCCTCCAACACTTTAAGGATTTCTACGAAATCTTTCTTACCTGCCTCTTGTTCGTCTCCCGTTGCTGTATAAATCTTGCTTCCTGTAGC</gDNA_template>
            <first_frame> L  L  L  L  E  I  E  L  T  L  *  P  N  K  H  F  K  S  *  N  N  T  R  *  R  Q  N  E  V  P  F  F  N  T  T  M  I  C  I  C  L  F  I  Q  V  Q  A  F  P  *  E  F  L  Q  T  Q  *  S  Y  V  G  Q  A  K  F  *  P  H  C  P  F  A  C  T  S  W  P  K  P  Q  G  L  G  T  Q  P  Q  C  *  S  Y  H  K  P  H  K  H  E  T  S  S  R  T  Q  *  E  Q  Y  P  Q  N  Q  S  Y  L  L  H  N  K  A  S  L  Q  V  L  P  P  T  L  *  G  F  L  R  N  L  S  Y  L  P  L  V  R  L  P  L  L  Y  K  S  C  F  L  *  </first_frame>
            <second_frame>  Y  Y  Y  *  K  *  N  L  H  Y  N  Q  T  N  I  S  N  L  E  T  T  Q  D  K  G  R  M  K  C  L  S  S  I  L  L  *  Y  A  Y  V  Y  L  F  K  S  K  L  F  P  K  N  F  Y  K  L  N  D  L  M  L  V  R  Q  S  F  S  H  T  V  P  L  H  A  P  L  G  P  S  H  K  V  W  A  L  S  L  N  A  E  V  T  I  N  L  I  S  M  K  P  A  V  E  P  N  E  S  N  I  P  K  T  K  V  I  S  S  I  I  R  L  L  S  K  C  S  L  Q  H  F  K  D  F  Y  E  I  F  L  T  C  L  L  F  V  S  R  C  C  I  N  L  A  S  C  S </second_frame>
            <third_frame>   I  T  I  R  N  R  T  Y  T  I  T  K  Q  T  F  Q  I  L  K  Q  H  K  I  K  A  E  *  S  A  F  L  Q  Y  Y  Y  D  M  H  M  F  I  Y  S  S  P  S  F  S  L  R  I  F  T  N  S  M  I  L  C  W  S  G  K  V  L  A  T  L  S  L  C  M  H  L  L  A  Q  A  T  R  F  G  H  S  A  S  M  L  K  L  P  *  T  S  *  A  *  N  Q  Q  *  N  P  M  R  A  I  S  P  K  P  K  L  S  P  P  *  *  G  F  S  P  S  A  P  S  N  T  L  R  I  S  T  K  S  F  L  P  A  S  C  S  S  P  V  A  V  *  I  L  L  P  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13718" stop="14071"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAYVYLFKSKLFPKNFYKLNDLMLVRQSFSHTVPLHAPLGPSHKVWALSLNAEVTINLISMKPAVEPNESNIPKTKVISSIIRLLSKCSLQHFKDFYEIFLTCLLFVSRCCINLASCS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="29104" PGL_stop="17170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29090" e_stop="28730"/>
            <exon e_start="28656" e_stop="28190"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="29090" e_stop="28730" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28656" e_stop="28190" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29090" stop="28730"/>
              <exon start="28656" stop="28316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29083" stop="28730"/>
              <exon start="28656" stop="28450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29076" stop="28817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29063" stop="28730"/>
              <exon start="28656" stop="28280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29060" stop="28730"/>
              <exon start="28656" stop="28210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29058" stop="28730"/>
              <exon start="28656" stop="28190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29054" stop="28730"/>
              <exon start="28656" stop="28428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29053" stop="28730"/>
              <exon start="28656" stop="28241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29052" stop="28730"/>
              <exon start="28656" stop="28448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29032" stop="28730"/>
              <exon start="28656" stop="28369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29029" stop="28730"/>
              <exon start="28656" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28963" stop="28730"/>
              <exon start="28656" stop="28398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28844" stop="28730"/>
              <exon start="28656" stop="28216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28813" stop="28730"/>
              <exon start="28656" stop="28205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28803" stop="28730"/>
              <exon start="28656" stop="28203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTACCAATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG : TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAATT</gDNA_template>
            <first_frame> Y  Y  Q  F  S  F  F  F  F  I  H  T  T  K  M  A  N  D  E  V  I  L  L  D  F  W  P  S  M  F  G  M  R  L  R  I  A  L  A  E  K  E  I  I  Y  E  Y  R  D  R  G  F  E  E  Q  K  S  S  A  F  A  D  E  S  Y  S  Q  E  N  P  C  F  D  S  *  W  Q  T  N  L  R  V  Y  Y  W  S  *  V  Y  *  *  S  V  E  G  *  S  P  F  P  P  F  *  S  L  *  E  S  T  S  *  V  L  G  *  L  H  *  *  E   : V  V  *  F  W  E  E  A  M  D  N  K  G  R  R  A  R  D  S  *  K  R  F  H  R  M  P  *  G  V  R  G  S  T  W  R  E  A  L  L  W  R  R  *  F  W  L  C  G  Y  C  V  D  W  V  L  *  L  V  L  C  L  *  E  L  C  *  H  Q  C  R  G  *  V  P  K  V  C  G  L  G  Q  E  L  Y  A  E  G  Q  C  G  *  V  F  A  *  S  T  *  G  L  *  I  C  K  S  A  K  A  E  V  W  N  *  I  N  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K  K  K  K  I </first_frame>
            <second_frame>  I  T  N  F  L  S  F  S  S  F  I  Q  Q  K  W  L  T  M  K  *  F  C  W  I  F  G  L  A  C  L  E  *  G  *  G  L  H  L  L  R  K  R  L  Y  M  S  T  E  I  E  D  L  R  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  I  I  G  V  E  Y  I  D  E  V  W  K  D  K  A  P  F  L  P  S  D  P  Y  E  R  A  Q  A  R  F  W  A  D  Y  I  D  K  K  :  L  Y  D  S  G  R  K  L  W  T  T  K  G  E  E  Q  E  T  A  K  K  D  F  I  E  C  L  K  V  L  E  G  A  L  G  E  K  P  Y  F  G  G  D  N  F  G  C  V  D  I  A  L  I  G  Y  Y  S  W  F  Y  A  Y  E  S  Y  A  N  I  S  V  E  A  E  C  P  K  F  V  A  W  A  K  N  C  M  L  R  D  S  V  A  K  S  L  P  D  Q  H  K  V  C  E  F  V  K  V  L  R  Q  K  F  G  I  E  *  T  Y  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  K  K  K  K   </second_frame>
            <third_frame>   L  P  I  F  F  L  F  L  H  S  Y  N  K  N  G  *  R  *  S  D  S  V  G  F  L  A  *  H  V  W  N  E  A  K  D  C  T  C  *  E  R  D  Y  I  *  V  Q  R  S  R  I  *  G  T  K  V  L  C  F  C  R  *  I  L  F  T  R  K  S  L  F  *  F  I  M  A  N  Q  F  A  S  L  L  L  E  L  S  I  L  M  K  C  G  R  I  K  P  L  S  S  L  L  I  L  M  R  E  H  K  L  G  F  G  L  I  T  L  I  R  S :   C  M  I  L  G  G  S  Y  G  Q  Q  R  E  K  S  K  R  Q  L  K  K  I  S  *  N  A  L  R  C  *  R  E  H  L  E  R  S  L  T  L  E  E  I  I  L  V  V  W  I  L  R  *  L  G  T  I  A  G  F  M  L  M  R  V  M  L  T  S  V  *  R  L  S  A  Q  S  L  W  L  G  P  R  I  V  C  *  G  T  V  W  L  S  L  C  L  I  N  I  R  S  V  N  L  *  K  C  *  G  R  S  L  E  L  N  K  H  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  K  K  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28987" stop="28730"/>
                    <exon start="28656" stop="28312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLHLLRKRLYMSTEIEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIGVEYIDEVWKDKAPFLPSDPYERAQARFWADYIDKKLYDSGRKLWTTKGEEQETAKKDFIECLKVLEGALGEKPYFGGDNFGCVDIALIGYYSWFYAYESYANISVEAECPKFVAWAKNCMLRDSVAKSLPDQHKVCEFVKVLRQKFGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29104" e_stop="28730"/>
            <exon e_start="28656" e_stop="28206"/>
            <exon e_start="27620" e_stop="27601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.752" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="29104" e_stop="28730" e_length="375"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28656" e_stop="28206" e_length="451"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.752">
            <gDNA_intron_boundary i_start="28205" i_stop="27621" i_length="585"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="27620" e_stop="27601" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29104" stop="28730"/>
              <exon start="28656" stop="28206"/>
              <exon start="27620" stop="27601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29090" stop="28730"/>
              <exon start="28656" stop="28316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29083" stop="28730"/>
              <exon start="28656" stop="28450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29076" stop="28817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29063" stop="28730"/>
              <exon start="28656" stop="28280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29060" stop="28730"/>
              <exon start="28656" stop="28210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29054" stop="28730"/>
              <exon start="28656" stop="28428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29053" stop="28730"/>
              <exon start="28656" stop="28241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29052" stop="28730"/>
              <exon start="28656" stop="28448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29032" stop="28730"/>
              <exon start="28656" stop="28369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29029" stop="28730"/>
              <exon start="28656" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28963" stop="28730"/>
              <exon start="28656" stop="28398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28844" stop="28730"/>
              <exon start="28656" stop="28216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTAGCATATCAGTATTACCAATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG : TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT : TGGTTGGCCCAATGATCTGG</gDNA_template>
            <first_frame> H  *  H  I  S  I  T  N  F  L  S  F  S  S  F  I  Q  Q  K  W  L  T  M  K  *  F  C  W  I  F  G  L  A  C  L  E  *  G  *  G  L  H  L  L  R  K  R  L  Y  M  S  T  E  I  E  D  L  R  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  I  I  G  V  E  Y  I  D  E  V  W  K  D  K  A  P  F  L  P  S  D  P  Y  E  R  A  Q  A  R  F  W  A  D  Y  I  D  K  K  :  L  Y  D  S  G  R  K  L  W  T  T  K  G  E  E  Q  E  T  A  K  K  D  F  I  E  C  L  K  V  L  E  G  A  L  G  E  K  P  Y  F  G  G  D  N  F  G  C  V  D  I  A  L  I  G  Y  Y  S  W  F  Y  A  Y  E  S  Y  A  N  I  S  V  E  A  E  C  P  K  F  V  A  W  A  K  N  C  M  L  R  D  S  V  A  K  S  L  P  D  Q  H  K  V  C  E  F  V  K  V  L  R  Q  K  F  G  I  E  *  T  Y  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : L  V  G  P  M  I  W </first_frame>
            <second_frame>  I  S  I  S  V  L  P  I  F  F  L  F  L  H  S  Y  N  K  N  G  *  R  *  S  D  S  V  G  F  L  A  *  H  V  W  N  E  A  K  D  C  T  C  *  E  R  D  Y  I  *  V  Q  R  S  R  I  *  G  T  K  V  L  C  F  C  R  *  I  L  F  T  R  K  S  L  F  *  F  I  M  A  N  Q  F  A  S  L  L  L  E  L  S  I  L  M  K  C  G  R  I  K  P  L  S  S  L  L  I  L  M  R  E  H  K  L  G  F  G  L  I  T  L  I  R  S :   C  M  I  L  G  G  S  Y  G  Q  Q  R  E  K  S  K  R  Q  L  K  K  I  S  *  N  A  L  R  C  *  R  E  H  L  E  R  S  L  T  L  E  E  I  I  L  V  V  W  I  L  R  *  L  G  T  I  A  G  F  M  L  M  R  V  M  L  T  S  V  *  R  L  S  A  Q  S  L  W  L  G  P  R  I  V  C  *  G  T  V  W  L  S  L  C  L  I  N  I  R  S  V  N  L  *  K  C  *  G  R  S  L  E  L  N  K  H  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  :  W  L  A  Q  *  S   </second_frame>
            <third_frame>   L  A  Y  Q  Y  Y  Q  F  S  F  F  F  F  I  H  T  T  K  M  A  N  D  E  V  I  L  L  D  F  W  P  S  M  F  G  M  R  L  R  I  A  L  A  E  K  E  I  I  Y  E  Y  R  D  R  G  F  E  E  Q  K  S  S  A  F  A  D  E  S  Y  S  Q  E  N  P  C  F  D  S  *  W  Q  T  N  L  R  V  Y  Y  W  S  *  V  Y  *  *  S  V  E  G  *  S  P  F  P  P  F  *  S  L  *  E  S  T  S  *  V  L  G  *  L  H  *  *  E   : V  V  *  F  W  E  E  A  M  D  N  K  G  R  R  A  R  D  S  *  K  R  F  H  R  M  P  *  G  V  R  G  S  T  W  R  E  A  L  L  W  R  R  *  F  W  L  C  G  Y  C  V  D  W  V  L  *  L  V  L  C  L  *  E  L  C  *  H  Q  C  R  G  *  V  P  K  V  C  G  L  G  Q  E  L  Y  A  E  G  Q  C  G  *  V  F  A  *  S  T  *  G  L  *  I  C  K  S  A  K  A  E  V  W  N  *  I  N  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F :   G  W  P  N  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28987" stop="28730"/>
                    <exon start="28656" stop="28312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLHLLRKRLYMSTEIEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIGVEYIDEVWKDKAPFLPSDPYERAQARFWADYIDKKLYDSGRKLWTTKGEEQETAKKDFIECLKVLEGALGEKPYFGGDNFGCVDIALIGYYSWFYAYESYANISVEAECPKFVAWAKNCMLRDSVAKSLPDQHKVCEFVKVLRQKFGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="29090" e_stop="28730"/>
            <exon e_start="28656" e_stop="28307"/>
            <exon e_start="25831" e_stop="25790"/>
            <exon e_start="22401" e_stop="22387"/>
            <exon e_start="18929" e_stop="18920"/>
            <exon e_start="17345" e_stop="17332"/>
            <exon e_start="17271" e_stop="17170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.975" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.619"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.800"/>
          <exon-intron don_prob="0.900" acc_prob="0.970" e_score="0.700"/>
          <exon-intron don_prob="0.968" acc_prob="0.000" e_score="0.714"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="29090" e_stop="28730" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="28656" e_stop="28307" e_length="350"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="28306" i_stop="25832" i_length="2475"/>
          </intron>
          <exon e_serial="3" e_score="0.619">
            <gDNA_exon_boundary e_start="25831" e_stop="25790" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25789" i_stop="22402" i_length="3388"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="22401" e_stop="22387" e_length="15"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22386" i_stop="18930" i_length="3457"/>
          </intron>
          <exon e_serial="5" e_score="0.700">
            <gDNA_exon_boundary e_start="18929" e_stop="18920" e_length="10"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.970">
            <gDNA_intron_boundary i_start="18919" i_stop="17346" i_length="1574"/>
          </intron>
          <exon e_serial="6" e_score="0.714">
            <gDNA_exon_boundary e_start="17345" e_stop="17332" e_length="14"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17331" i_stop="17272" i_length="60"/>
          </intron>
          <exon e_serial="7" e_score="0.833">
            <gDNA_exon_boundary e_start="17271" e_stop="17170" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29090" stop="28730"/>
              <exon start="28656" stop="28316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29083" stop="28730"/>
              <exon start="28656" stop="28450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29076" stop="28817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29054" stop="28730"/>
              <exon start="28656" stop="28428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29052" stop="28730"/>
              <exon start="28656" stop="28448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29032" stop="28730"/>
              <exon start="28656" stop="28369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28963" stop="28730"/>
              <exon start="28656" stop="28398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28656" stop="28307"/>
              <exon start="25831" stop="25790"/>
              <exon start="22401" stop="22387"/>
              <exon start="18929" stop="18920"/>
              <exon start="17345" stop="17332"/>
              <exon start="17271" stop="17170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28528" stop="28307"/>
              <exon start="25831" stop="25790"/>
              <exon start="22401" stop="22387"/>
              <exon start="18929" stop="18920"/>
              <exon start="17345" stop="17332"/>
              <exon start="17271" stop="17170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280387" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28521" stop="28307"/>
              <exon start="25831" stop="25790"/>
              <exon start="22401" stop="22387"/>
              <exon start="18929" stop="18920"/>
              <exon start="17345" stop="17332"/>
              <exon start="17271" stop="17176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28517" stop="28307"/>
              <exon start="25831" stop="25790"/>
              <exon start="22401" stop="22387"/>
              <exon start="18929" stop="18920"/>
              <exon start="17345" stop="17332"/>
              <exon start="17271" stop="17176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28516" stop="28307"/>
              <exon start="25831" stop="25790"/>
              <exon start="22401" stop="22387"/>
              <exon start="18929" stop="18920"/>
              <exon start="17345" stop="17332"/>
              <exon start="17271" stop="17176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTACCAATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG : TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATA : TGGCACAAAGTCGTCTGCCTAATGACACTGGCGTTGGGTCCG : TCTTTTAATTAAATT : GTCTGATTGA : TCATGGTGCAAATA : AGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> Y  Y  Q  F  S  F  F  F  F  I  H  T  T  K  M  A  N  D  E  V  I  L  L  D  F  W  P  S  M  F  G  M  R  L  R  I  A  L  A  E  K  E  I  I  Y  E  Y  R  D  R  G  F  E  E  Q  K  S  S  A  F  A  D  E  S  Y  S  Q  E  N  P  C  F  D  S  *  W  Q  T  N  L  R  V  Y  Y  W  S  *  V  Y  *  *  S  V  E  G  *  S  P  F  P  P  F  *  S  L  *  E  S  T  S  *  V  L  G  *  L  H  *  *  E   : V  V  *  F  W  E  E  A  M  D  N  K  G  R  R  A  R  D  S  *  K  R  F  H  R  M  P  *  G  V  R  G  S  T  W  R  E  A  L  L  W  R  R  *  F  W  L  C  G  Y  C  V  D  W  V  L  *  L  V  L  C  L  *  E  L  C  *  H  Q  C  R  G  *  V  P  K  V  C  G  L  G  Q  E  L  Y  A  E  G  Q  C  G  *  V  F  A  *  S  T  *  G  L  *  I  C  K  S  A  K  A  E  V  W  N  *  I  N  I  :  W  H  K  V  V  C  L  M  T  L  A  L  G  P  :  S  F  N  *  I  :  V  *  L   : I  M  V  Q  I  :  S  C  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  I  T  N  F  L  S  F  S  S  F  I  Q  Q  K  W  L  T  M  K  *  F  C  W  I  F  G  L  A  C  L  E  *  G  *  G  L  H  L  L  R  K  R  L  Y  M  S  T  E  I  E  D  L  R  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  I  I  G  V  E  Y  I  D  E  V  W  K  D  K  A  P  F  L  P  S  D  P  Y  E  R  A  Q  A  R  F  W  A  D  Y  I  D  K  K  :  L  Y  D  S  G  R  K  L  W  T  T  K  G  E  E  Q  E  T  A  K  K  D  F  I  E  C  L  K  V  L  E  G  A  L  G  E  K  P  Y  F  G  G  D  N  F  G  C  V  D  I  A  L  I  G  Y  Y  S  W  F  Y  A  Y  E  S  Y  A  N  I  S  V  E  A  E  C  P  K  F  V  A  W  A  K  N  C  M  L  R  D  S  V  A  K  S  L  P  D  Q  H  K  V  C  E  F  V  K  V  L  R  Q  K  F  G  I  E  *  T  Y :   G  T  K  S  S  A  *  *  H  W  R  W  V  R :   L  L  I  K  L :   S  D  *  :  S  W  C  K  * :   V  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   L  P  I  F  F  L  F  L  H  S  Y  N  K  N  G  *  R  *  S  D  S  V  G  F  L  A  *  H  V  W  N  E  A  K  D  C  T  C  *  E  R  D  Y  I  *  V  Q  R  S  R  I  *  G  T  K  V  L  C  F  C  R  *  I  L  F  T  R  K  S  L  F  *  F  I  M  A  N  Q  F  A  S  L  L  L  E  L  S  I  L  M  K  C  G  R  I  K  P  L  S  S  L  L  I  L  M  R  E  H  K  L  G  F  G  L  I  T  L  I  R  S :   C  M  I  L  G  G  S  Y  G  Q  Q  R  E  K  S  K  R  Q  L  K  K  I  S  *  N  A  L  R  C  *  R  E  H  L  E  R  S  L  T  L  E  E  I  I  L  V  V  W  I  L  R  *  L  G  T  I  A  G  F  M  L  M  R  V  M  L  T  S  V  *  R  L  S  A  Q  S  L  W  L  G  P  R  I  V  C  *  G  T  V  W  L  S  L  C  L  I  N  I  R  S  V  N  L  *  K  C  *  G  R  S  L  E  L  N  K  H   : M  A  Q  S  R  L  P  N  D  T  G  V  G  S   : V  F  *  L  N   : C  L  I  D :   H  G  A  N   : K  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28987" stop="28730"/>
                    <exon start="28656" stop="28312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLHLLRKRLYMSTEIEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIGVEYIDEVWKDKAPFLPSDPYERAQARFWADYIDKKLYDSGRKLWTTKGEEQETAKKDFIECLKVLEGALGEKPYFGGDNFGCVDIALIGYYSWFYAYESYANISVEAECPKFVAWAKNCMLRDSVAKSLPDQHKVCEFVKVLRQKFGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="29090" e_stop="28730"/>
            <exon e_start="28656" e_stop="28210"/>
            <exon e_start="27372" e_stop="27336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.649"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="29090" e_stop="28730" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28656" e_stop="28210" e_length="447"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28209" i_stop="27373" i_length="837"/>
          </intron>
          <exon e_serial="3" e_score="0.649">
            <gDNA_exon_boundary e_start="27372" e_stop="27336" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29090" stop="28730"/>
              <exon start="28656" stop="28316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29083" stop="28730"/>
              <exon start="28656" stop="28450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29076" stop="28817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29063" stop="28730"/>
              <exon start="28656" stop="28280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29060" stop="28730"/>
              <exon start="28656" stop="28210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29054" stop="28730"/>
              <exon start="28656" stop="28428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29053" stop="28730"/>
              <exon start="28656" stop="28241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29052" stop="28730"/>
              <exon start="28656" stop="28448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29032" stop="28730"/>
              <exon start="28656" stop="28369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28963" stop="28730"/>
              <exon start="28656" stop="28398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28867" stop="28730"/>
              <exon start="28656" stop="28210"/>
              <exon start="27372" stop="27336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28844" stop="28730"/>
              <exon start="28656" stop="28216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTACCAATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG : TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : AAATTTCACTGTGATATGATGTTCTTATAAAAGAGGA</gDNA_template>
            <first_frame> Y  Y  Q  F  S  F  F  F  F  I  H  T  T  K  M  A  N  D  E  V  I  L  L  D  F  W  P  S  M  F  G  M  R  L  R  I  A  L  A  E  K  E  I  I  Y  E  Y  R  D  R  G  F  E  E  Q  K  S  S  A  F  A  D  E  S  Y  S  Q  E  N  P  C  F  D  S  *  W  Q  T  N  L  R  V  Y  Y  W  S  *  V  Y  *  *  S  V  E  G  *  S  P  F  P  P  F  *  S  L  *  E  S  T  S  *  V  L  G  *  L  H  *  *  E   : V  V  *  F  W  E  E  A  M  D  N  K  G  R  R  A  R  D  S  *  K  R  F  H  R  M  P  *  G  V  R  G  S  T  W  R  E  A  L  L  W  R  R  *  F  W  L  C  G  Y  C  V  D  W  V  L  *  L  V  L  C  L  *  E  L  C  *  H  Q  C  R  G  *  V  P  K  V  C  G  L  G  Q  E  L  Y  A  E  G  Q  C  G  *  V  F  A  *  S  T  *  G  L  *  I  C  K  S  A  K  A  E  V  W  N  *  I  N  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : *  I  S  L  *  Y  D  V  L  I  K  E   </first_frame>
            <second_frame>  I  T  N  F  L  S  F  S  S  F  I  Q  Q  K  W  L  T  M  K  *  F  C  W  I  F  G  L  A  C  L  E  *  G  *  G  L  H  L  L  R  K  R  L  Y  M  S  T  E  I  E  D  L  R  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  I  I  G  V  E  Y  I  D  E  V  W  K  D  K  A  P  F  L  P  S  D  P  Y  E  R  A  Q  A  R  F  W  A  D  Y  I  D  K  K  :  L  Y  D  S  G  R  K  L  W  T  T  K  G  E  E  Q  E  T  A  K  K  D  F  I  E  C  L  K  V  L  E  G  A  L  G  E  K  P  Y  F  G  G  D  N  F  G  C  V  D  I  A  L  I  G  Y  Y  S  W  F  Y  A  Y  E  S  Y  A  N  I  S  V  E  A  E  C  P  K  F  V  A  W  A  K  N  C  M  L  R  D  S  V  A  K  S  L  P  D  Q  H  K  V  C  E  F  V  K  V  L  R  Q  K  F  G  I  E  *  T  Y  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  :  K  F  H  C  D  M  M  F  L  *  K  R  </second_frame>
            <third_frame>   L  P  I  F  F  L  F  L  H  S  Y  N  K  N  G  *  R  *  S  D  S  V  G  F  L  A  *  H  V  W  N  E  A  K  D  C  T  C  *  E  R  D  Y  I  *  V  Q  R  S  R  I  *  G  T  K  V  L  C  F  C  R  *  I  L  F  T  R  K  S  L  F  *  F  I  M  A  N  Q  F  A  S  L  L  L  E  L  S  I  L  M  K  C  G  R  I  K  P  L  S  S  L  L  I  L  M  R  E  H  K  L  G  F  G  L  I  T  L  I  R  S :   C  M  I  L  G  G  S  Y  G  Q  Q  R  E  K  S  K  R  Q  L  K  K  I  S  *  N  A  L  R  C  *  R  E  H  L  E  R  S  L  T  L  E  E  I  I  L  V  V  W  I  L  R  *  L  G  T  I  A  G  F  M  L  M  R  V  M  L  T  S  V  *  R  L  S  A  Q  S  L  W  L  G  P  R  I  V  C  *  G  T  V  W  L  S  L  C  L  I  N  I  R  S  V  N  L  *  K  C  *  G  R  S  L  E  L  N  K  H  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L :   N  F  T  V  I  *  C  S  Y  K  R  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28987" stop="28730"/>
                    <exon start="28656" stop="28312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLHLLRKRLYMSTEIEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIGVEYIDEVWKDKAPFLPSDPYERAQARFWADYIDKKLYDSGRKLWTTKGEEQETAKKDFIECLKVLEGALGEKPYFGGDNFGCVDIALIGYYSWFYAYESYANISVEAECPKFVAWAKNCMLRDSVAKSLPDQHKVCEFVKVLRQKFGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="29090" e_stop="28730"/>
            <exon e_start="28656" e_stop="28211"/>
            <exon e_start="26583" e_stop="26550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.647"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="29090" e_stop="28730" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28656" e_stop="28211" e_length="446"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28210" i_stop="26584" i_length="1627"/>
          </intron>
          <exon e_serial="3" e_score="0.647">
            <gDNA_exon_boundary e_start="26583" e_stop="26550" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29090" stop="28730"/>
              <exon start="28656" stop="28316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29083" stop="28730"/>
              <exon start="28656" stop="28450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29076" stop="28817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29063" stop="28730"/>
              <exon start="28656" stop="28280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29054" stop="28730"/>
              <exon start="28656" stop="28428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29053" stop="28730"/>
              <exon start="28656" stop="28241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29052" stop="28730"/>
              <exon start="28656" stop="28448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29032" stop="28730"/>
              <exon start="28656" stop="28369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28963" stop="28730"/>
              <exon start="28656" stop="28398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28844" stop="28730"/>
              <exon start="28656" stop="28216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28385" stop="28211"/>
              <exon start="26583" stop="26550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTACCAATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG : TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : ATATACTTTTAGTTAAGATTAAAAATATTTAAAA</gDNA_template>
            <first_frame> Y  Y  Q  F  S  F  F  F  F  I  H  T  T  K  M  A  N  D  E  V  I  L  L  D  F  W  P  S  M  F  G  M  R  L  R  I  A  L  A  E  K  E  I  I  Y  E  Y  R  D  R  G  F  E  E  Q  K  S  S  A  F  A  D  E  S  Y  S  Q  E  N  P  C  F  D  S  *  W  Q  T  N  L  R  V  Y  Y  W  S  *  V  Y  *  *  S  V  E  G  *  S  P  F  P  P  F  *  S  L  *  E  S  T  S  *  V  L  G  *  L  H  *  *  E   : V  V  *  F  W  E  E  A  M  D  N  K  G  R  R  A  R  D  S  *  K  R  F  H  R  M  P  *  G  V  R  G  S  T  W  R  E  A  L  L  W  R  R  *  F  W  L  C  G  Y  C  V  D  W  V  L  *  L  V  L  C  L  *  E  L  C  *  H  Q  C  R  G  *  V  P  K  V  C  G  L  G  Q  E  L  Y  A  E  G  Q  C  G  *  V  F  A  *  S  T  *  G  L  *  I  C  K  S  A  K  A  E  V  W  N  *  I  N  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  :  I  Y  F  *  L  R  L  K  I  F  K  </first_frame>
            <second_frame>  I  T  N  F  L  S  F  S  S  F  I  Q  Q  K  W  L  T  M  K  *  F  C  W  I  F  G  L  A  C  L  E  *  G  *  G  L  H  L  L  R  K  R  L  Y  M  S  T  E  I  E  D  L  R  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  I  I  G  V  E  Y  I  D  E  V  W  K  D  K  A  P  F  L  P  S  D  P  Y  E  R  A  Q  A  R  F  W  A  D  Y  I  D  K  K  :  L  Y  D  S  G  R  K  L  W  T  T  K  G  E  E  Q  E  T  A  K  K  D  F  I  E  C  L  K  V  L  E  G  A  L  G  E  K  P  Y  F  G  G  D  N  F  G  C  V  D  I  A  L  I  G  Y  Y  S  W  F  Y  A  Y  E  S  Y  A  N  I  S  V  E  A  E  C  P  K  F  V  A  W  A  K  N  C  M  L  R  D  S  V  A  K  S  L  P  D  Q  H  K  V  C  E  F  V  K  V  L  R  Q  K  F  G  I  E  *  T  Y  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L :   Y  T  F  S  *  D  *  K  Y  L  K </second_frame>
            <third_frame>   L  P  I  F  F  L  F  L  H  S  Y  N  K  N  G  *  R  *  S  D  S  V  G  F  L  A  *  H  V  W  N  E  A  K  D  C  T  C  *  E  R  D  Y  I  *  V  Q  R  S  R  I  *  G  T  K  V  L  C  F  C  R  *  I  L  F  T  R  K  S  L  F  *  F  I  M  A  N  Q  F  A  S  L  L  L  E  L  S  I  L  M  K  C  G  R  I  K  P  L  S  S  L  L  I  L  M  R  E  H  K  L  G  F  G  L  I  T  L  I  R  S :   C  M  I  L  G  G  S  Y  G  Q  Q  R  E  K  S  K  R  Q  L  K  K  I  S  *  N  A  L  R  C  *  R  E  H  L  E  R  S  L  T  L  E  E  I  I  L  V  V  W  I  L  R  *  L  G  T  I  A  G  F  M  L  M  R  V  M  L  T  S  V  *  R  L  S  A  Q  S  L  W  L  G  P  R  I  V  C  *  G  T  V  W  L  S  L  C  L  I  N  I  R  S  V  N  L  *  K  C  *  G  R  S  L  E  L  N  K  H  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : Y  I  L  L  V  K  I  K  N  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28987" stop="28730"/>
                    <exon start="28656" stop="28312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLHLLRKRLYMSTEIEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIGVEYIDEVWKDKAPFLPSDPYERAQARFWADYIDKKLYDSGRKLWTTKGEEQETAKKDFIECLKVLEGALGEKPYFGGDNFGCVDIALIGYYSWFYAYESYANISVEAECPKFVAWAKNCMLRDSVAKSLPDQHKVCEFVKVLRQKFGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="29090" e_stop="28730"/>
            <exon e_start="28656" e_stop="28215"/>
            <exon e_start="27972" e_stop="27948"/>
            <exon e_start="26754" e_stop="26737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.426" e_score="0.600"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="29090" e_stop="28730" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28656" e_stop="28215" e_length="442"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28214" i_stop="27973" i_length="242"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="27972" e_stop="27948" e_length="25"/>
          </exon>
          <intron i_serial="3" don_prob="0.735" acc_prob="0.426">
            <gDNA_intron_boundary i_start="27947" i_stop="26755" i_length="1193"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="26754" e_stop="26737" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29090" stop="28730"/>
              <exon start="28656" stop="28316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29083" stop="28730"/>
              <exon start="28656" stop="28450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29076" stop="28817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29063" stop="28730"/>
              <exon start="28656" stop="28280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29054" stop="28730"/>
              <exon start="28656" stop="28428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29053" stop="28730"/>
              <exon start="28656" stop="28241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29052" stop="28730"/>
              <exon start="28656" stop="28448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29032" stop="28730"/>
              <exon start="28656" stop="28369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28963" stop="28730"/>
              <exon start="28656" stop="28398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28844" stop="28730"/>
              <exon start="28656" stop="28216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28792" stop="28730"/>
              <exon start="28656" stop="28215"/>
              <exon start="27972" stop="27948"/>
              <exon start="26754" stop="26737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28792" stop="28730"/>
              <exon start="28656" stop="28215"/>
              <exon start="27972" stop="27948"/>
              <exon start="26754" stop="26737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTACCAATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG : TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : TAATATAAAGCTAATAAAAATAATT : ACTAGCAAAAGAAAACAT</gDNA_template>
            <first_frame> Y  Y  Q  F  S  F  F  F  F  I  H  T  T  K  M  A  N  D  E  V  I  L  L  D  F  W  P  S  M  F  G  M  R  L  R  I  A  L  A  E  K  E  I  I  Y  E  Y  R  D  R  G  F  E  E  Q  K  S  S  A  F  A  D  E  S  Y  S  Q  E  N  P  C  F  D  S  *  W  Q  T  N  L  R  V  Y  Y  W  S  *  V  Y  *  *  S  V  E  G  *  S  P  F  P  P  F  *  S  L  *  E  S  T  S  *  V  L  G  *  L  H  *  *  E   : V  V  *  F  W  E  E  A  M  D  N  K  G  R  R  A  R  D  S  *  K  R  F  H  R  M  P  *  G  V  R  G  S  T  W  R  E  A  L  L  W  R  R  *  F  W  L  C  G  Y  C  V  D  W  V  L  *  L  V  L  C  L  *  E  L  C  *  H  Q  C  R  G  *  V  P  K  V  C  G  L  G  Q  E  L  Y  A  E  G  Q  C  G  *  V  F  A  *  S  T  *  G  L  *  I  C  K  S  A  K  A  E  V  W  N  *  I  N  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F :   N  I  K  L  I  K  I  I  :  T  S  K  R  K  H </first_frame>
            <second_frame>  I  T  N  F  L  S  F  S  S  F  I  Q  Q  K  W  L  T  M  K  *  F  C  W  I  F  G  L  A  C  L  E  *  G  *  G  L  H  L  L  R  K  R  L  Y  M  S  T  E  I  E  D  L  R  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  I  I  G  V  E  Y  I  D  E  V  W  K  D  K  A  P  F  L  P  S  D  P  Y  E  R  A  Q  A  R  F  W  A  D  Y  I  D  K  K  :  L  Y  D  S  G  R  K  L  W  T  T  K  G  E  E  Q  E  T  A  K  K  D  F  I  E  C  L  K  V  L  E  G  A  L  G  E  K  P  Y  F  G  G  D  N  F  G  C  V  D  I  A  L  I  G  Y  Y  S  W  F  Y  A  Y  E  S  Y  A  N  I  S  V  E  A  E  C  P  K  F  V  A  W  A  K  N  C  M  L  R  D  S  V  A  K  S  L  P  D  Q  H  K  V  C  E  F  V  K  V  L  R  Q  K  F  G  I  E  *  T  Y  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : L  I  *  S  *  *  K  *  L :   L  A  K  E  N   </second_frame>
            <third_frame>   L  P  I  F  F  L  F  L  H  S  Y  N  K  N  G  *  R  *  S  D  S  V  G  F  L  A  *  H  V  W  N  E  A  K  D  C  T  C  *  E  R  D  Y  I  *  V  Q  R  S  R  I  *  G  T  K  V  L  C  F  C  R  *  I  L  F  T  R  K  S  L  F  *  F  I  M  A  N  Q  F  A  S  L  L  L  E  L  S  I  L  M  K  C  G  R  I  K  P  L  S  S  L  L  I  L  M  R  E  H  K  L  G  F  G  L  I  T  L  I  R  S :   C  M  I  L  G  G  S  Y  G  Q  Q  R  E  K  S  K  R  Q  L  K  K  I  S  *  N  A  L  R  C  *  R  E  H  L  E  R  S  L  T  L  E  E  I  I  L  V  V  W  I  L  R  *  L  G  T  I  A  G  F  M  L  M  R  V  M  L  T  S  V  *  R  L  S  A  Q  S  L  W  L  G  P  R  I  V  C  *  G  T  V  W  L  S  L  C  L  I  N  I  R  S  V  N  L  *  K  C  *  G  R  S  L  E  L  N  K  H  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  :  *  Y  K  A  N  K  N  N   : Y  *  Q  K  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28987" stop="28730"/>
                    <exon start="28656" stop="28312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLHLLRKRLYMSTEIEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIGVEYIDEVWKDKAPFLPSDPYERAQARFWADYIDKKLYDSGRKLWTTKGEEQETAKKDFIECLKVLEGALGEKPYFGGDNFGCVDIALIGYYSWFYAYESYANISVEAECPKFVAWAKNCMLRDSVAKSLPDQHKVCEFVKVLRQKFGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="29090" e_stop="28730"/>
            <exon e_start="28656" e_stop="28217"/>
            <exon e_start="26694" e_stop="26663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.656"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="29090" e_stop="28730" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28729" i_stop="28657" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="28656" e_stop="28217" e_length="440"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28216" i_stop="26695" i_length="1522"/>
          </intron>
          <exon e_serial="3" e_score="0.656">
            <gDNA_exon_boundary e_start="26694" e_stop="26663" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29090" stop="28730"/>
              <exon start="28656" stop="28316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29083" stop="28730"/>
              <exon start="28656" stop="28450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29076" stop="28817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29063" stop="28730"/>
              <exon start="28656" stop="28280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29054" stop="28730"/>
              <exon start="28656" stop="28428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29053" stop="28730"/>
              <exon start="28656" stop="28241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29052" stop="28730"/>
              <exon start="28656" stop="28448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29032" stop="28730"/>
              <exon start="28656" stop="28369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28963" stop="28730"/>
              <exon start="28656" stop="28398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28791" stop="28730"/>
              <exon start="28656" stop="28217"/>
              <exon start="26694" stop="26663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTACCAATTTTCTTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAG : TTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : TATATTAATAAATCTAATAAATATTTTTTTTA</gDNA_template>
            <first_frame> Y  Y  Q  F  S  F  F  F  F  I  H  T  T  K  M  A  N  D  E  V  I  L  L  D  F  W  P  S  M  F  G  M  R  L  R  I  A  L  A  E  K  E  I  I  Y  E  Y  R  D  R  G  F  E  E  Q  K  S  S  A  F  A  D  E  S  Y  S  Q  E  N  P  C  F  D  S  *  W  Q  T  N  L  R  V  Y  Y  W  S  *  V  Y  *  *  S  V  E  G  *  S  P  F  P  P  F  *  S  L  *  E  S  T  S  *  V  L  G  *  L  H  *  *  E   : V  V  *  F  W  E  E  A  M  D  N  K  G  R  R  A  R  D  S  *  K  R  F  H  R  M  P  *  G  V  R  G  S  T  W  R  E  A  L  L  W  R  R  *  F  W  L  C  G  Y  C  V  D  W  V  L  *  L  V  L  C  L  *  E  L  C  *  H  Q  C  R  G  *  V  P  K  V  C  G  L  G  Q  E  L  Y  A  E  G  Q  C  G  *  V  F  A  *  S  T  *  G  L  *  I  C  K  S  A  K  A  E  V  W  N  *  I  N  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  :  Y  I  N  K  S  N  K  Y  F  F   </first_frame>
            <second_frame>  I  T  N  F  L  S  F  S  S  F  I  Q  Q  K  W  L  T  M  K  *  F  C  W  I  F  G  L  A  C  L  E  *  G  *  G  L  H  L  L  R  K  R  L  Y  M  S  T  E  I  E  D  L  R  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  I  I  G  V  E  Y  I  D  E  V  W  K  D  K  A  P  F  L  P  S  D  P  Y  E  R  A  Q  A  R  F  W  A  D  Y  I  D  K  K  :  L  Y  D  S  G  R  K  L  W  T  T  K  G  E  E  Q  E  T  A  K  K  D  F  I  E  C  L  K  V  L  E  G  A  L  G  E  K  P  Y  F  G  G  D  N  F  G  C  V  D  I  A  L  I  G  Y  Y  S  W  F  Y  A  Y  E  S  Y  A  N  I  S  V  E  A  E  C  P  K  F  V  A  W  A  K  N  C  M  L  R  D  S  V  A  K  S  L  P  D  Q  H  K  V  C  E  F  V  K  V  L  R  Q  K  F  G  I  E  *  T  Y  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F :   I  L  I  N  L  I  N  I  F  F  </second_frame>
            <third_frame>   L  P  I  F  F  L  F  L  H  S  Y  N  K  N  G  *  R  *  S  D  S  V  G  F  L  A  *  H  V  W  N  E  A  K  D  C  T  C  *  E  R  D  Y  I  *  V  Q  R  S  R  I  *  G  T  K  V  L  C  F  C  R  *  I  L  F  T  R  K  S  L  F  *  F  I  M  A  N  Q  F  A  S  L  L  L  E  L  S  I  L  M  K  C  G  R  I  K  P  L  S  S  L  L  I  L  M  R  E  H  K  L  G  F  G  L  I  T  L  I  R  S :   C  M  I  L  G  G  S  Y  G  Q  Q  R  E  K  S  K  R  Q  L  K  K  I  S  *  N  A  L  R  C  *  R  E  H  L  E  R  S  L  T  L  E  E  I  I  L  V  V  W  I  L  R  *  L  G  T  I  A  G  F  M  L  M  R  V  M  L  T  S  V  *  R  L  S  A  Q  S  L  W  L  G  P  R  I  V  C  *  G  T  V  W  L  S  L  C  L  I  N  I  R  S  V  N  L  *  K  C  *  G  R  S  L  E  L  N  K  H  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : L  Y  *  *  I  *  *  I  F  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28987" stop="28730"/>
                    <exon start="28656" stop="28312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLHLLRKRLYMSTEIEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIGVEYIDEVWKDKAPFLPSDPYERAQARFWADYIDKKLYDSGRKLWTTKGEEQETAKKDFIECLKVLEGALGEKPYFGGDNFGCVDIALIGYYSWFYAYESYANISVEAECPKFVAWAKNCMLRDSVAKSLPDQHKVCEFVKVLRQKFGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="29076" e_stop="28307"/>
            <exon e_start="25831" e_stop="25790"/>
            <exon e_start="22401" e_stop="22387"/>
            <exon e_start="18929" e_stop="18920"/>
            <exon e_start="17345" e_stop="17332"/>
            <exon e_start="17271" e_stop="17170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.975" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.619"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.800"/>
          <exon-intron don_prob="0.900" acc_prob="0.970" e_score="0.700"/>
          <exon-intron don_prob="0.968" acc_prob="0.000" e_score="0.714"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="29076" e_stop="28307" e_length="770"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="28306" i_stop="25832" i_length="2475"/>
          </intron>
          <exon e_serial="2" e_score="0.619">
            <gDNA_exon_boundary e_start="25831" e_stop="25790" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25789" i_stop="22402" i_length="3388"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="22401" e_stop="22387" e_length="15"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22386" i_stop="18930" i_length="3457"/>
          </intron>
          <exon e_serial="4" e_score="0.700">
            <gDNA_exon_boundary e_start="18929" e_stop="18920" e_length="10"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.970">
            <gDNA_intron_boundary i_start="18919" i_stop="17346" i_length="1574"/>
          </intron>
          <exon e_serial="5" e_score="0.714">
            <gDNA_exon_boundary e_start="17345" e_stop="17332" e_length="14"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17331" i_stop="17272" i_length="60"/>
          </intron>
          <exon e_serial="6" e_score="0.833">
            <gDNA_exon_boundary e_start="17271" e_stop="17170" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29076" stop="28548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29076" stop="28817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28656" stop="28307"/>
              <exon start="25831" stop="25790"/>
              <exon start="22401" stop="22387"/>
              <exon start="18929" stop="18920"/>
              <exon start="17345" stop="17332"/>
              <exon start="17271" stop="17170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28528" stop="28307"/>
              <exon start="25831" stop="25790"/>
              <exon start="22401" stop="22387"/>
              <exon start="18929" stop="18920"/>
              <exon start="17345" stop="17332"/>
              <exon start="17271" stop="17170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280387" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28521" stop="28307"/>
              <exon start="25831" stop="25790"/>
              <exon start="22401" stop="22387"/>
              <exon start="18929" stop="18920"/>
              <exon start="17345" stop="17332"/>
              <exon start="17271" stop="17176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28517" stop="28307"/>
              <exon start="25831" stop="25790"/>
              <exon start="22401" stop="22387"/>
              <exon start="18929" stop="18920"/>
              <exon start="17345" stop="17332"/>
              <exon start="17271" stop="17176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28516" stop="28307"/>
              <exon start="25831" stop="25790"/>
              <exon start="22401" stop="22387"/>
              <exon start="18929" stop="18920"/>
              <exon start="17345" stop="17332"/>
              <exon start="17271" stop="17176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTTTTCTTCATTCATACAACAAAAATGGCTAACGATGAAGTGATTCTGTTGGATTTTTGGCCTAGCATGTTTGGAATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTATATATGAGTACAGAGATCGAGGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTGCGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTCCTCCCTTCTGATCCTTATGAGAGAGCACAAGCTAGGTTTTGGGCTGATTACATTGATAAGAAGGTAAATTCATAGTCCCTCTGTTTCAGTTAAGACGGTAAGTAACTATTCTCTTTTGGTTTGTTGAAATTTTCAGTTGTATGATTCTGGGAGGAAGCTATGGACAACAAAGGGAGAAGAGCAAGAGACAGCTAAAAAAGATTTCATAGAATGCCTTAAGGTGTTAGAGGGAGCACTTGGAGAGAAGCCTTACTTTGGAGGAGATAATTTTGGTTGTGTGGATATTGCGTTGATTGGGTACTATAGCTGGTTTTATGCTTATGAGAGTTATGCTAACATCAGTGTAGAGGCTGAGTGCCCAAAGTTTGTGGCTTGGGCCAAGAATTGTATGCTGAGGGACAGTGTGGCTAAGTCTTTGCCTGATCAACATAAGGTCTGTGAATTTGTAAAAGTGCTAAGGCAGAAGTTTGGAATTGAATAAACATA : TGGCACAAAGTCGTCTGCCTAATGACACTGGCGTTGGGTCCG : TCTTTTAATTAAATT : GTCTGATTGA : TCATGGTGCAAATA : AGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> F  L  F  L  H  S  Y  N  K  N  G  *  R  *  S  D  S  V  G  F  L  A  *  H  V  W  N  E  A  K  D  C  T  C  *  E  R  D  Y  I  *  V  Q  R  S  R  I  *  G  T  K  V  L  C  F  C  R  *  I  L  F  T  R  K  S  L  F  *  F  I  M  A  N  Q  F  A  S  L  L  L  E  L  S  I  L  M  K  C  G  R  I  K  P  L  S  S  L  L  I  L  M  R  E  H  K  L  G  F  G  L  I  T  L  I  R  R  *  I  H  S  P  S  V  S  V  K  T  V  S  N  Y  S  L  L  V  C  *  N  F  Q  L  Y  D  S  G  R  K  L  W  T  T  K  G  E  E  Q  E  T  A  K  K  D  F  I  E  C  L  K  V  L  E  G  A  L  G  E  K  P  Y  F  G  G  D  N  F  G  C  V  D  I  A  L  I  G  Y  Y  S  W  F  Y  A  Y  E  S  Y  A  N  I  S  V  E  A  E  C  P  K  F  V  A  W  A  K  N  C  M  L  R  D  S  V  A  K  S  L  P  D  Q  H  K  V  C  E  F  V  K  V  L  R  Q  K  F  G  I  E  *  T  Y :   G  T  K  S  S  A  *  *  H  W  R  W  V  R :   L  L  I  K  L :   S  D  *  :  S  W  C  K  * :   V  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  F  F  F  F  I  H  T  T  K  M  A  N  D  E  V  I  L  L  D  F  W  P  S  M  F  G  M  R  L  R  I  A  L  A  E  K  E  I  I  Y  E  Y  R  D  R  G  F  E  E  Q  K  S  S  A  F  A  D  E  S  Y  S  Q  E  N  P  C  F  D  S  *  W  Q  T  N  L  R  V  Y  Y  W  S  *  V  Y  *  *  S  V  E  G  *  S  P  F  P  P  F  *  S  L  *  E  S  T  S  *  V  L  G  *  L  H  *  *  E  G  K  F  I  V  P  L  F  Q  L  R  R  *  V  T  I  L  F  W  F  V  E  I  F  S  C  M  I  L  G  G  S  Y  G  Q  Q  R  E  K  S  K  R  Q  L  K  K  I  S  *  N  A  L  R  C  *  R  E  H  L  E  R  S  L  T  L  E  E  I  I  L  V  V  W  I  L  R  *  L  G  T  I  A  G  F  M  L  M  R  V  M  L  T  S  V  *  R  L  S  A  Q  S  L  W  L  G  P  R  I  V  C  *  G  T  V  W  L  S  L  C  L  I  N  I  R  S  V  N  L  *  K  C  *  G  R  S  L  E  L  N  K  H   : M  A  Q  S  R  L  P  N  D  T  G  V  G  S   : V  F  *  L  N   : C  L  I  D :   H  G  A  N   : K  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   S  F  S  S  F  I  Q  Q  K  W  L  T  M  K  *  F  C  W  I  F  G  L  A  C  L  E  *  G  *  G  L  H  L  L  R  K  R  L  Y  M  S  T  E  I  E  D  L  R  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  I  I  G  V  E  Y  I  D  E  V  W  K  D  K  A  P  F  L  P  S  D  P  Y  E  R  A  Q  A  R  F  W  A  D  Y  I  D  K  K  V  N  S  *  S  L  C  F  S  *  D  G  K  *  L  F  S  F  G  L  L  K  F  S  V  V  *  F  W  E  E  A  M  D  N  K  G  R  R  A  R  D  S  *  K  R  F  H  R  M  P  *  G  V  R  G  S  T  W  R  E  A  L  L  W  R  R  *  F  W  L  C  G  Y  C  V  D  W  V  L  *  L  V  L  C  L  *  E  L  C  *  H  Q  C  R  G  *  V  P  K  V  C  G  L  G  Q  E  L  Y  A  E  G  Q  C  G  *  V  F  A  *  S  T  *  G  L  *  I  C  K  S  A  K  A  E  V  W  N  *  I  N  I  :  W  H  K  V  V  C  L  M  T  L  A  L  G  P  :  S  F  N  *  I  :  V  *  L   : I  M  V  Q  I  :  S  C  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28665" stop="28312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFQLYDSGRKLWTTKGEEQETAKKDFIECLKVLEGALGEKPYFGGDNFGCVDIALIGYYSWFYAYESYANISVEAECPKFVAWAKNCMLRDSVAKSLPDQHKVCEFVKVLRQKFGIE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="8" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28987" stop="28718"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLHLLRKRLYMSTEIEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIGVEYIDEVWKDKAPFLPSDPYERAQARFWADYIDKKVNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="32137" PGL_stop="30496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32137" e_stop="31769"/>
            <exon e_start="31072" e_stop="30496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32137" e_stop="31769" e_length="369"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31768" i_stop="31073" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31072" e_stop="30496" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32137" stop="31769"/>
              <exon start="31072" stop="30993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32136" stop="31769"/>
              <exon start="31072" stop="31037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32120" stop="31769"/>
              <exon start="31072" stop="30906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32119" stop="31769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32118" stop="31769"/>
              <exon start="31072" stop="30916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32114" stop="31769"/>
              <exon start="31072" stop="30904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32040" stop="31769"/>
              <exon start="31072" stop="30914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31910" stop="31769"/>
              <exon start="31072" stop="30496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATCAGTACTAGCAATTTTATTTCTTTCTTGTTTATTCATATATCAAAAATGGCTAACAATGAGGTGATTTTGTTGGATTTTTGGCCTAGCATGTTTGGCTTGAGGCTGAGGATTGCACTTGCTGAAAAAGAGGTTAAATATGAGTACAGAGAAGAGGATTTGCCGAACAAAAGCCCTCTGCTTTTGCAGATGAACCCTATTCACAAGAAAATCCCTGTTTTGATTCACAATGGTAAACCGATTTGTGAGTCTATTATTGGAGTTGAGTATATTGATGAAGTTTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGGGCACAAGCTAGGTTTTGGGCTGACTACATTGACAAGAAG : TTTTATTGGGCTTCAAGGAAGCTGTGGACAACAAAAGGAGAAGAGCTGGACGCAGCTAAGGAAGAGTTCATAGTATGCCTCAAAGTTCTGGAGGGAGCACTAGGAGACAAGCCTTATTTTGGAGGGGATAACTTTGGTTTTGTGGATATTGCTCTCATTGGGTTCTACTGTTGGTTTAGTGCCTATGAGACTTACGGTAACTTCAGCACAGAGGCTGAGAGCCCAAAGTTTGTCGCTTGGGCCAAGAGGTGTATGCAGAGGGACAGTGTGGCTAAGTCTTCGCCCGACCAACATAAGGTCCTCGAGTTTGTGAAAGTTGTTAGGCAGAGGCTTGGAATTGAATAAAAATATGCTTATGCAATTATGCATCATAATGTATTGAAAAAAGGCACTTCATTGTGCCTTCTTGTGTTGTTGTTTCAAGACTTTAAAATGTTTGTTTGGTCATAGTGTAAGTTCTACTTGCACTTGTAATAAAGGAGTCTTAGCCTGTGACTTTGTTTAGTGTGGCTTTTGTTGTCCTTGTATGTAATTGTGGAGCTTCTCCTCTTTGTAATGATAAGTAATTAATTCTTCA</gDNA_template>
            <first_frame> Q  I  S  T  S  N  F  I  S  F  L  F  I  H  I  S  K  M  A  N  N  E  V  I  L  L  D  F  W  P  S  M  F  G  L  R  L  R  I  A  L  A  E  K  E  V  K  Y  E  Y  R  E  E  D  L  P  N  K  S  P  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  I  I  G  V  E  Y  I  D  E  V  W  K  D  K  A  P  L  L  P  S  D  P  Y  E  R  A  Q  A  R  F  W  A  D  Y  I  D  K  K  :  F  Y  W  A  S  R  K  L  W  T  T  K  G  E  E  L  D  A  A  K  E  E  F  I  V  C  L  K  V  L  E  G  A  L  G  D  K  P  Y  F  G  G  D  N  F  G  F  V  D  I  A  L  I  G  F  Y  C  W  F  S  A  Y  E  T  Y  G  N  F  S  T  E  A  E  S  P  K  F  V  A  W  A  K  R  C  M  Q  R  D  S  V  A  K  S  S  P  D  Q  H  K  V  L  E  F  V  K  V  V  R  Q  R  L  G  I  E  *  K  Y  A  Y  A  I  M  H  H  N  V  L  K  K  G  T  S  L  C  L  L  V  L  L  F  Q  D  F  K  M  F  V  W  S  *  C  K  F  Y  L  H  L  *  *  R  S  L  S  L  *  L  C  L  V  W  L  L  L  S  L  Y  V  I  V  E  L  L  L  F  V  M  I  S  N  *  F  F  </first_frame>
            <second_frame>  K  S  V  L  A  I  L  F  L  S  C  L  F  I  Y  Q  K  W  L  T  M  R  *  F  C  W  I  F  G  L  A  C  L  A  *  G  *  G  L  H  L  L  K  K  R  L  N  M  S  T  E  K  R  I  C  R  T  K  A  L  C  F  C  R  *  T  L  F  T  R  K  S  L  F  *  F  T  M  V  N  R  F  V  S  L  L  L  E  L  S  I  L  M  K  F  G  R  I  K  P  L  C  S  L  L  I  L  M  R  G  H  K  L  G  F  G  L  T  T  L  T  R  S :   F  I  G  L  Q  G  S  C  G  Q  Q  K  E  K  S  W  T  Q  L  R  K  S  S  *  Y  A  S  K  F  W  R  E  H  *  E  T  S  L  I  L  E  G  I  T  L  V  L  W  I  L  L  S  L  G  S  T  V  G  L  V  P  M  R  L  T  V  T  S  A  Q  R  L  R  A  Q  S  L  S  L  G  P  R  G  V  C  R  G  T  V  W  L  S  L  R  P  T  N  I  R  S  S  S  L  *  K  L  L  G  R  G  L  E  L  N  K  N  M  L  M  Q  L  C  I  I  M  Y  *  K  K  A  L  H  C  A  F  L  C  C  C  F  K  T  L  K  C  L  F  G  H  S  V  S  S  T  C  T  C  N  K  G  V  L  A  C  D  F  V  *  C  G  F  C  C  P  C  M  *  L  W  S  F  S  S  L  *  *  *  V  I  N  S  S </second_frame>
            <third_frame>   N  Q  Y  *  Q  F  Y  F  F  L  V  Y  S  Y  I  K  N  G  *  Q  *  G  D  F  V  G  F  L  A  *  H  V  W  L  E  A  E  D  C  T  C  *  K  R  G  *  I  *  V  Q  R  R  G  F  A  E  Q  K  P  S  A  F  A  D  E  P  Y  S  Q  E  N  P  C  F  D  S  Q  W  *  T  D  L  *  V  Y  Y  W  S  *  V  Y  *  *  S  L  E  G  *  S  P  F  A  P  F  *  S  L  *  E  G  T  S  *  V  L  G  *  L  H  *  Q  E   : V  L  L  G  F  K  E  A  V  D  N  K  R  R  R  A  G  R  S  *  G  R  V  H  S  M  P  Q  S  S  G  G  S  T  R  R  Q  A  L  F  W  R  G  *  L  W  F  C  G  Y  C  S  H  W  V  L  L  L  V  *  C  L  *  D  L  R  *  L  Q  H  R  G  *  E  P  K  V  C  R  L  G  Q  E  V  Y  A  E  G  Q  C  G  *  V  F  A  R  P  T  *  G  P  R  V  C  E  S  C  *  A  E  A  W  N  *  I  K  I  C  L  C  N  Y  A  S  *  C  I  E  K  R  H  F  I  V  P  S  C  V  V  V  S  R  L  *  N  V  C  L  V  I  V  *  V  L  L  A  L  V  I  K  E  S  *  P  V  T  L  F  S  V  A  F  V  V  L  V  C  N  C  G  A  S  P  L  C  N  D  K  *  L  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32137" stop="31769"/>
                    <exon start="31072" stop="30728"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISTSNFISFLFIHISKMANNEVILLDFWPSMFGLRLRIALAEKEVKYEYREEDLPNKSPLLLQMNPIHKKIPVLIHNGKPICESIIGVEYIDEVWKDKAPLLPSDPYERAQARFWADYIDKKFYWASRKLWTTKGEELDAAKEEFIVCLKVLEGALGDKPYFGGDNFGFVDIALIGFYCWFSAYETYGNFSTEAESPKFVAWAKRCMQRDSVAKSSPDQHKVLEFVKVVRQRLGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="38651" PGL_stop="39725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38651" e_stop="38662"/>
            <exon e_start="39402" e_stop="39725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="38651" e_stop="38662" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38663" i_stop="39401" i_length="739"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="39402" e_stop="39725" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38651" stop="38662"/>
              <exon start="39402" stop="39725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224199" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTTTTCATT : AACCTTTTTTTTAAAAAAAAAGCAAATCATTATGATGCAATAATCGCAAAACCAAACATCAAATCACTCATATCAATCATCCAGTCAAAGTAACAAGTTCAGATGAAGACACAAAATTCAAAAGTAAAAGCAGAACTTACACTATGACCAAAAGAACAAACAATTTCAAATCTTGAAACAACTCAACAAGGCAAAATGAAGTGCTTTATTCAAATACACATTATTATGCATATGTTTATTCAATTCCAAACTTCCGCCTTAGCATTTGTATAAACTCAAGGACCTTATGTTGGTCAGGCAAAGACTTGGCCACACTGTCCCTTT</gDNA_template>
            <first_frame> L  F  F  I  :  N  L  F  F  K  K  K  A  N  H  Y  D  A  I  I  A  K  P  N  I  K  S  L  I  S  I  I  Q  S  K  *  Q  V  Q  M  K  T  Q  N  S  K  V  K  A  E  L  T  L  *  P  K  E  Q  T  I  S  N  L  E  T  T  Q  Q  G  K  M  K  C  F  I  Q  I  H  I  I  M  H  M  F  I  Q  F  Q  T  S  A  L  A  F  V  *  T  Q  G  P  Y  V  G  Q  A  K  T  W  P  H  C  P  F </first_frame>
            <second_frame>  Y  F  S  L :   T  F  F  L  K  K  K  Q  I  I  M  M  Q  *  S  Q  N  Q  T  S  N  H  S  Y  Q  S  S  S  Q  S  N  K  F  R  *  R  H  K  I  Q  K  *  K  Q  N  L  H  Y  D  Q  K  N  K  Q  F  Q  I  L  K  Q  L  N  K  A  K  *  S  A  L  F  K  Y  T  L  L  C  I  C  L  F  N  S  K  L  P  P  *  H  L  Y  K  L  K  D  L  M  L  V  R  Q  R  L  G  H  T  V  P   </second_frame>
            <third_frame>   I  F  H   : *  P  F  F  *  K  K  S  K  S  L  *  C  N  N  R  K  T  K  H  Q  I  T  H  I  N  H  P  V  K  V  T  S  S  D  E  D  T  K  F  K  S  K  S  R  T  Y  T  M  T  K  R  T  N  N  F  K  S  *  N  N  S  T  R  Q  N  E  V  L  Y  S  N  T  H  Y  Y  A  Y  V  Y  S  I  P  N  F  R  L  S  I  C  I  N  S  R  T  L  C  W  S  G  K  D  L  A  T  L  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0220H02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="40000" PGL_stop="39405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40000" e_stop="39405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="40000" e_stop="39405" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40000" stop="39588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39999" stop="39442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39875" stop="39449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39722" stop="39405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTGTTTGAAATTTTCAGTTGTATGTTTCTGCAAGAAAGATATGGGGAACAAAGGGAGAAGAGCAGGAGGCAGGTAAGAAAGATTTCATAGAAGTACTTAAAGTGTTGGAGGGAGAACTTGGAGAGAAGCCTTATTTTGGAGGAGATAATTTTGGTTTTGTGGATATTGCTTTGATTGGGTTCTATAGCTGGTTTTATGCTTATGAGACTTATGGTAACTTCAGCGCAGAGGCTGAGTGTCCAAAGTTTGTGGCTTGGGCTAAGAGGTGCATGCAAAGGGACAGTGTGGCCAAGTCTTTGCCTGACCAACATAAGGTCCTTGAGTTTATACAAATGCTAAGGCGGAAGTTTGGAATTGAATAAACATATGCATAATAATGTGTATTTGAATAAAGCACTTCATTTTGCCTTGTTGAGTTGTTTCAAGATTTGAAATTGTTTGTTCTTTTGGTCATAGTGTAAGTTCTGCTTTTACTTTTGAATTTTGTGTCTTCATCTGAACTTGTTACTTTGACTGGATGATTGATATGAGTGATTTGATGTTTGGTTTTGCGATTATTGCATCATAATGATTTGCTTTTTTTTTAAAAAAAAG</gDNA_template>
            <first_frame> V  C  L  K  F  S  V  V  C  F  C  K  K  D  M  G  N  K  G  R  R  A  G  G  R  *  E  R  F  H  R  S  T  *  S  V  G  G  R  T  W  R  E  A  L  F  W  R  R  *  F  W  F  C  G  Y  C  F  D  W  V  L  *  L  V  L  C  L  *  D  L  W  *  L  Q  R  R  G  *  V  S  K  V  C  G  L  G  *  E  V  H  A  K  G  Q  C  G  Q  V  F  A  *  P  T  *  G  P  *  V  Y  T  N  A  K  A  E  V  W  N  *  I  N  I  C  I  I  M  C  I  *  I  K  H  F  I  L  P  C  *  V  V  S  R  F  E  I  V  C  S  F  G  H  S  V  S  S  A  F  T  F  E  F  C  V  F  I  *  T  C  Y  F  D  W  M  I  D  M  S  D  L  M  F  G  F  A  I  I  A  S  *  *  F  A  F  F  L  K  K   </first_frame>
            <second_frame>  F  V  *  N  F  Q  L  Y  V  S  A  R  K  I  W  G  T  K  G  E  E  Q  E  A  G  K  K  D  F  I  E  V  L  K  V  L  E  G  E  L  G  E  K  P  Y  F  G  G  D  N  F  G  F  V  D  I  A  L  I  G  F  Y  S  W  F  Y  A  Y  E  T  Y  G  N  F  S  A  E  A  E  C  P  K  F  V  A  W  A  K  R  C  M  Q  R  D  S  V  A  K  S  L  P  D  Q  H  K  V  L  E  F  I  Q  M  L  R  R  K  F  G  I  E  *  T  Y  A  *  *  C  V  F  E  *  S  T  S  F  C  L  V  E  L  F  Q  D  L  K  L  F  V  L  L  V  I  V  *  V  L  L  L  L  L  N  F  V  S  S  S  E  L  V  T  L  T  G  *  L  I  *  V  I  *  C  L  V  L  R  L  L  H  H  N  D  L  L  F  F  *  K  K  </second_frame>
            <third_frame>   L  F  E  I  F  S  C  M  F  L  Q  E  R  Y  G  E  Q  R  E  K  S  R  R  Q  V  R  K  I  S  *  K  Y  L  K  C  W  R  E  N  L  E  R  S  L  I  L  E  E  I  I  L  V  L  W  I  L  L  *  L  G  S  I  A  G  F  M  L  M  R  L  M  V  T  S  A  Q  R  L  S  V  Q  S  L  W  L  G  L  R  G  A  C  K  G  T  V  W  P  S  L  C  L  T  N  I  R  S  L  S  L  Y  K  C  *  G  G  S  L  E  L  N  K  H  M  H  N  N  V  Y  L  N  K  A  L  H  F  A  L  L  S  C  F  K  I  *  N  C  L  F  F  W  S  *  C  K  F  C  F  Y  F  *  I  L  C  L  H  L  N  L  L  L  *  L  D  D  *  Y  E  *  F  D  V  W  F  C  D  Y  C  I  I  M  I  C  F  F  F  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39990" stop="39637"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFQLYVSARKIWGTKGEEQEAGKKDFIEVLKVLEGELGEKPYFGGDNFGFVDIALIGFYSWFYAYETYGNFSAEAECPKFVAWAKRCMQRDSVAKSLPDQHKVLEFIQMLRRKFGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42708" PGL_stop="45195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42708" e_stop="42809"/>
            <exon e_start="42896" e_stop="43051"/>
            <exon e_start="43164" e_stop="43375"/>
            <exon e_start="43459" e_stop="43560"/>
            <exon e_start="44213" e_stop="44382"/>
            <exon e_start="44487" e_stop="45195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.818" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.690" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.739" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42708" e_stop="42809" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.818" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42810" i_stop="42895" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42896" e_stop="43051" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.798">
            <gDNA_intron_boundary i_start="43052" i_stop="43163" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43164" e_stop="43375" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.690" acc_prob="0.995">
            <gDNA_intron_boundary i_start="43376" i_stop="43458" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43459" e_stop="43560" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43561" i_stop="44212" i_length="652"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44213" e_stop="44382" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.739">
            <gDNA_intron_boundary i_start="44383" i_stop="44486" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44487" e_stop="45195" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42708" stop="42809"/>
              <exon start="42896" stop="43051"/>
              <exon start="43164" stop="43375"/>
              <exon start="43459" stop="43560"/>
              <exon start="44213" stop="44382"/>
              <exon start="44487" stop="44494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42709" stop="42809"/>
              <exon start="42896" stop="43051"/>
              <exon start="43164" stop="43375"/>
              <exon start="43459" stop="43560"/>
              <exon start="44213" stop="44382"/>
              <exon start="44487" stop="44537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43462" stop="43560"/>
              <exon start="44213" stop="44382"/>
              <exon start="44487" stop="45059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43463" stop="43560"/>
              <exon start="44213" stop="44382"/>
              <exon start="44487" stop="45165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43463" stop="43560"/>
              <exon start="44213" stop="44382"/>
              <exon start="44487" stop="45157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44240" stop="44382"/>
              <exon start="44487" stop="45195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCTTACGGGGAAGCCGCTCTTTCCTGGAAAAAATGTAGTTCACCAACTGGATTTAATGACTGATCTGCTTGGAACGCCTTCAATGGATACAATTTCTCGT : GTGCGTAATGACAAGGCTAGGAGATACCTAACTAGCATGAGAAAGAAGCAGCCTGTTTCTTTTGCTCAGAAATTTCCAAATGCTGATCCTTTGTCCCTTAAACTTCTTGAAAGATTACTTGCTTTTGACCCCAAGGACCGACCCACTGCTGAGGAG : GCACTAGCTGATCCTTATTTTAAGGGTCTGGCTAAATCTGAAAGGGAACCATCATGCAAGTCAATTTCAAAAATGGAGTTCGAATTTGAGAGGCGAAGAGTGACGAAGGAGGATCTCAGGGAATTAATATTCCGGGAGATACTAGAATATCATCCTCAGCTGAGGAAGGATTACTTGAATGGTGTAGAAAGGACTAATTTTCTGTATCCGAG : TGCTGTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAG : GTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAG : CAGCCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACTAGTGGTGCAGCTCATAGGAAAGTAGGGACTGTTCAGTATGGTATGTCCAGGATGTACTAGAAAATACACCTCCAAAGTGGTGAAATTATGAATACATACATGTTGGGTGGGGTTGGAGAAAGTCCATCTCAGGAATGGTGGCAGAAACTCTTTGGACAAAAGGGTATGGTGGGTTGTACAGGCAGGAGAATCTGCAGGGGATCTAGTCCTATTTCCTAATTGTCAGTTTTTCCTAGTTGTTATCACATGAAGACTATATCATATTTTCATCATGAAATTCATTTTAGTGATGGTAATGTCCCCTCCCCTTCTCC</gDNA_template>
            <first_frame> V  L  T  G  K  P  L  F  P  G  K  N  V  V  H  Q  L  D  L  M  T  D  L  L  G  T  P  S  M  D  T  I  S  R  :  V  R  N  D  K  A  R  R  Y  L  T  S  M  R  K  K  Q  P  V  S  F  A  Q  K  F  P  N  A  D  P  L  S  L  K  L  L  E  R  L  L  A  F  D  P  K  D  R  P  T  A  E  E  :  A  L  A  D  P  Y  F  K  G  L  A  K  S  E  R  E  P  S  C  K  S  I  S  K  M  E  F  E  F  E  R  R  R  V  T  K  E  D  L  R  E  L  I  F  R  E  I  L  E  Y  H  P  Q  L  R  K  D  Y  L  N  G  V  E  R  T  N  F  L  Y  P  S :   A  V  D  Q  F  R  K  Q  F  A  H  L  E  E  N  G  G  N  G  V  P  V  V  P  M  D  R  K  H  V  S  L  P  R :   S  T  V  V  H  S  N  P  N  P  L  K  E  Q  P  I  V  A  N  M  R  D  R  Q  N  G  E  E  S  C  S  R  N  C  R  D  S  E  G  L  A  S  S  L  T  R  T  L  Q  A  Q  P  R  N  A  L   : A  A  K  P  G  K  V  V  G  P  G  L  A  Y  D  S  G  N  R  E  K  Y  D  P  R  S  Q  V  R  N  A  V  G  P  P  Q  I  M  S  S  V  Y  S  Y  D  R  S  G  V  V  K  Q  E  R  S  V  E  T  E  R  D  M  N  C  H  S  K  P  M  A  P  C  G  M  A  A  K  L  A  P  D  I  A  I  N  I  D  S  N  P  F  Y  M  M  R  A  G  V  T  K  P  D  R  V  D  D  R  I  T  I  D  T  N  L  L  Q  A  K  S  Q  Y  G  G  I  G  V  A  A  A  A  A  T  S  G  A  A  H  R  K  V  G  T  V  Q  Y  G  M  S  R  M  Y  *  K  I  H  L  Q  S  G  E  I  M  N  T  Y  M  L  G  G  V  G  E  S  P  S  Q  E  W  W  Q  K  L  F  G  Q  K  G  M  V  G  C  T  G  R  R  I  C  R  G  S  S  P  I  S  *  L  S  V  F  P  S  C  Y  H  M  K  T  I  S  Y  F  H  H  E  I  H  F  S  D  G  N  V  P  S  P  S   </first_frame>
            <second_frame>  F  L  R  G  S  R  S  F  L  E  K  M  *  F  T  N  W  I  *  *  L  I  C  L  E  R  L  Q  W  I  Q  F  L  V :   C  V  M  T  R  L  G  D  T  *  L  A  *  E  R  S  S  L  F  L  L  L  R  N  F  Q  M  L  I  L  C  P  L  N  F  L  K  D  Y  L  L  L  T  P  R  T  D  P  L  L  R  R :   H  *  L  I  L  I  L  R  V  W  L  N  L  K  G  N  H  H  A  S  Q  F  Q  K  W  S  S  N  L  R  G  E  E  *  R  R  R  I  S  G  N  *  Y  S  G  R  Y  *  N  I  I  L  S  *  G  R  I  T  *  M  V  *  K  G  L  I  F  C  I  R   : V  L  L  I  N  S  G  N  S  S  L  T  W  K  R  T  V  V  M  A  F  Q  W  F  R  W  T  G  S  M  S  L  F  Q   : G  L  Q  L  Y  I  Q  I  Q  T  L  *  K  N  S  L  L  L  P  I  *  E  T  D  K  M  V  K  S  L  A  V  E  T  A  E  I  L  K  A  L  Q  V  V  *  Q  E  P  Y  R  L  S  Q  E  M  L  *  :  Q  P  N  Q  E  K  L  L  V  P  V  W  L  M  I  R  E  I  E  K  N  M  I  L  G  L  K  S  G  M  Q  *  A  P  L  R  L  C  L  Q  F  T  A  T  T  E  V  G  W  *  N  K  K  G  L  L  R  Q  R  G  I  *  I  V  I  Q  S  Q  W  H  H  V  E  W  L  L  S  *  P  Q  I  L  L  *  I  L  I  A  T  H  S  I  *  C  E  L  E  L  Q  N  Q  I  V  L  M  T  E  S  P  *  T  Q  T  Y  C  R  L  N  P  N  M  V  E  L  E  L  R  R  Q  Q  L  L  V  V  Q  L  I  G  K  *  G  L  F  S  M  V  C  P  G  C  T  R  K  Y  T  S  K  V  V  K  L  *  I  H  T  C  W  V  G  L  E  K  V  H  L  R  N  G  G  R  N  S  L  D  K  R  V  W  W  V  V  Q  A  G  E  S  A  G  D  L  V  L  F  P  N  C  Q  F  F  L  V  V  I  T  *  R  L  Y  H  I  F  I  M  K  F  I  L  V  M  V  M  S  P  P  L  L  </second_frame>
            <third_frame>   S  Y  G  E  A  A  L  S  W  K  K  C  S  S  P  T  G  F  N  D  *  S  A  W  N  A  F  N  G  Y  N  F  S   : C  A  *  *  Q  G  *  E  I  P  N  *  H  E  K  E  A  A  C  F  F  C  S  E  I  S  K  C  *  S  F  V  P  *  T  S  *  K  I  T  C  F  *  P  Q  G  P  T  H  C  *  G   : G  T  S  *  S  L  F  *  G  S  G  *  I  *  K  G  T  I  M  Q  V  N  F  K  N  G  V  R  I  *  E  A  K  S  D  E  G  G  S  Q  G  I  N  I  P  G  D  T  R  I  S  S  S  A  E  E  G  L  L  E  W  C  R  K  D  *  F  S  V  S  E  :  C  C  *  S  I  Q  E  T  V  R  S  L  G  R  E  R  W  *  W  R  S  S  G  S  D  G  Q  E  A  C  L  S  S  K  :  V  Y  S  C  T  F  K  S  K  P  F  E  R  T  A  Y  C  C  Q  Y  E  R  P  T  K  W  *  R  V  L  Q  *  K  L  Q  R  F  *  R  P  C  K  *  S  N  K  N  P  T  G  S  A  K  K  C  F  S :   S  Q  T  R  K  S  C  W  S  R  F  G  L  *  F  G  K  *  R  K  I  *  S  *  V  S  S  Q  E  C  S  R  P  P  S  D  Y  V  F  S  L  Q  L  R  Q  K  W  G  G  E  T  R  K  V  C  *  D  R  E  G  Y  E  L  S  F  K  A  N  G  T  M  W  N  G  C  *  V  S  P  R  Y  C  Y  K  Y  *  *  Q  P  I  L  Y  D  A  S  W  S  Y  K  T  R  S  C  *  *  P  N  H  H  R  H  K  L  I  A  G  *  I  P  I  W  W  N  W  S  C  G  G  S  S  Y  *  W  C  S  S  *  E  S  R  D  C  S  V  W  Y  V  Q  D  V  L  E  N  T  P  P  K  W  *  N  Y  E  Y  I  H  V  G  W  G  W  R  K  S  I  S  G  M  V  A  E  T  L  W  T  K  G  Y  G  G  L  Y  R  Q  E  N  L  Q  G  I  *  S  Y  F  L  I  V  S  F  S  *  L  L  S  H  E  D  Y  I  I  F  S  S  *  N  S  F  *  *  W  *  C  P  L  P  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42708" stop="42809"/>
                    <exon start="42896" stop="43051"/>
                    <exon start="43164" stop="43375"/>
                    <exon start="43459" stop="43560"/>
                    <exon start="44213" stop="44382"/>
                    <exon start="44487" stop="44941"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTGKPLFPGKNVVHQLDLMTDLLGTPSMDTISRVRNDKARRYLTSMRKKQPVSFAQKFPNADPLSLKLLERLLAFDPKDRPTAEEALADPYFKGLAKSEREPSCKSISKMEFEFERRRVTKEDLRELIFREILEYHPQLRKDYLNGVERTNFLYPSAVDQFRKQFAHLEENGGNGVPVVPMDRKHVSLPRSTVVHSNPNPLKEQPIVANMRDRQNGEESCSRNCRDSEGLASSLTRTLQAQPRNALAAKPGKVVGPGLAYDSGNREKYDPRSQVRNAVGPPQIMSSVYSYDRSGVVKQERSVETERDMNCHSKPMAPCGMAAKLAPDIAINIDSNPFYMMRAGVTKPDRVDDRITIDTNLLQAKSQYGGIGVAAAAATSGAAHRKVGTVQYGMSRMY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42964" e_stop="43051"/>
            <exon e_start="43164" e_stop="43375"/>
            <exon e_start="43459" e_stop="43560"/>
            <exon e_start="44213" e_stop="44382"/>
            <exon e_start="44490" e_stop="44881"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.690" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.706" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42964" e_stop="43051" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.798">
            <gDNA_intron_boundary i_start="43052" i_stop="43163" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43164" e_stop="43375" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.690" acc_prob="0.995">
            <gDNA_intron_boundary i_start="43376" i_stop="43458" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43459" e_stop="43560" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43561" i_stop="44212" i_length="652"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44213" e_stop="44382" e_length="170"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.706">
            <gDNA_intron_boundary i_start="44383" i_stop="44489" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44490" e_stop="44881" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42964" stop="43051"/>
              <exon start="43164" stop="43375"/>
              <exon start="43459" stop="43560"/>
              <exon start="44213" stop="44382"/>
              <exon start="44490" stop="44763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43201" stop="43375"/>
              <exon start="43459" stop="43560"/>
              <exon start="44213" stop="44382"/>
              <exon start="44490" stop="44881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704353" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATTTCCAAATGCTGATCCTTTGTCCCTTAAACTTCTTGAAAGATTACTTGCTTTTGACCCCAAGGACCGACCCACTGCTGAGGAG : GCACTAGCTGATCCTTATTTTAAGGGTCTGGCTAAATCTGAAAGGGAACCATCATGCAAGTCAATTTCAAAAATGGAGTTCGAATTTGAGAGGCGAAGAGTGACGAAGGAGGATCTCAGGGAATTAATATTCCGGGAGATACTAGAATATCATCCTCAGCTGAGGAAGGATTACTTGAATGGTGTAGAAAGGACTAATTTTCTGTATCCGAG : TGCTGTTGATCAATTCAGGAAACAGTTCGCTCACTTGGAAGAGAACGGTGGTAATGGCGTTCCAGTGGTTCCGATGGACAGGAAGCATGTCTCTCTTCCAAG : GTCTACAGTTGTACATTCAAATCCAAACCCTTTGAAAGAACAGCCTATTGTTGCCAATATGAGAGACCGACAAAATGGTGAAGAGTCTTGCAGTAGAAACTGCAGAGATTCTGAAGGCCTTGCAAGTAGTCTAACAAGAACCCTACAGGCTCAGCCAAGAAATGCTTTAG : CCAAACCAGGAAAAGTTGTTGGTCCCGGTTTGGCTTATGATTCGGGAAATAGAGAAAAATATGATCCTAGGTCTCAAGTCAGGAATGCAGTAGGCCCCCCTCAGATTATGTCTTCAGTTTACAGCTACGACAGAAGTGGGGTGGTGAAACAAGAAAGGTCTGTTGAGACAGAGAGGGATATGAATTGTCATTCAAAGCCAATGGCACCATGTGGAATGGCTGCTAAGTTAGCCCCAGATATTGCTATAAATATTGATAGCAACCCATTCTATATGATGCGAGCTGGAGTTACAAAACCAGATCGTGTTGATGACCGAATCACCATAGACACAAACTTATTGCAGGCTAAATCCCAATATGGTGGAATTGGAGTTGCGGCGGCAGCAGCTACT</gDNA_template>
            <first_frame> E  I  S  K  C  *  S  F  V  P  *  T  S  *  K  I  T  C  F  *  P  Q  G  P  T  H  C  *  G   : G  T  S  *  S  L  F  *  G  S  G  *  I  *  K  G  T  I  M  Q  V  N  F  K  N  G  V  R  I  *  E  A  K  S  D  E  G  G  S  Q  G  I  N  I  P  G  D  T  R  I  S  S  S  A  E  E  G  L  L  E  W  C  R  K  D  *  F  S  V  S  E  :  C  C  *  S  I  Q  E  T  V  R  S  L  G  R  E  R  W  *  W  R  S  S  G  S  D  G  Q  E  A  C  L  S  S  K  :  V  Y  S  C  T  F  K  S  K  P  F  E  R  T  A  Y  C  C  Q  Y  E  R  P  T  K  W  *  R  V  L  Q  *  K  L  Q  R  F  *  R  P  C  K  *  S  N  K  N  P  T  G  S  A  K  K  C  F  S :   Q  T  R  K  S  C  W  S  R  F  G  L  *  F  G  K  *  R  K  I  *  S  *  V  S  S  Q  E  C  S  R  P  P  S  D  Y  V  F  S  L  Q  L  R  Q  K  W  G  G  E  T  R  K  V  C  *  D  R  E  G  Y  E  L  S  F  K  A  N  G  T  M  W  N  G  C  *  V  S  P  R  Y  C  Y  K  Y  *  *  Q  P  I  L  Y  D  A  S  W  S  Y  K  T  R  S  C  *  *  P  N  H  H  R  H  K  L  I  A  G  *  I  P  I  W  W  N  W  S  C  G  G  S  S  Y  </first_frame>
            <second_frame>  K  F  P  N  A  D  P  L  S  L  K  L  L  E  R  L  L  A  F  D  P  K  D  R  P  T  A  E  E  :  A  L  A  D  P  Y  F  K  G  L  A  K  S  E  R  E  P  S  C  K  S  I  S  K  M  E  F  E  F  E  R  R  R  V  T  K  E  D  L  R  E  L  I  F  R  E  I  L  E  Y  H  P  Q  L  R  K  D  Y  L  N  G  V  E  R  T  N  F  L  Y  P  S :   A  V  D  Q  F  R  K  Q  F  A  H  L  E  E  N  G  G  N  G  V  P  V  V  P  M  D  R  K  H  V  S  L  P  R :   S  T  V  V  H  S  N  P  N  P  L  K  E  Q  P  I  V  A  N  M  R  D  R  Q  N  G  E  E  S  C  S  R  N  C  R  D  S  E  G  L  A  S  S  L  T  R  T  L  Q  A  Q  P  R  N  A  L   : A  K  P  G  K  V  V  G  P  G  L  A  Y  D  S  G  N  R  E  K  Y  D  P  R  S  Q  V  R  N  A  V  G  P  P  Q  I  M  S  S  V  Y  S  Y  D  R  S  G  V  V  K  Q  E  R  S  V  E  T  E  R  D  M  N  C  H  S  K  P  M  A  P  C  G  M  A  A  K  L  A  P  D  I  A  I  N  I  D  S  N  P  F  Y  M  M  R  A  G  V  T  K  P  D  R  V  D  D  R  I  T  I  D  T  N  L  L  Q  A  K  S  Q  Y  G  G  I  G  V  A  A  A  A  A  T </second_frame>
            <third_frame>   N  F  Q  M  L  I  L  C  P  L  N  F  L  K  D  Y  L  L  L  T  P  R  T  D  P  L  L  R  R :   H  *  L  I  L  I  L  R  V  W  L  N  L  K  G  N  H  H  A  S  Q  F  Q  K  W  S  S  N  L  R  G  E  E  *  R  R  R  I  S  G  N  *  Y  S  G  R  Y  *  N  I  I  L  S  *  G  R  I  T  *  M  V  *  K  G  L  I  F  C  I  R   : V  L  L  I  N  S  G  N  S  S  L  T  W  K  R  T  V  V  M  A  F  Q  W  F  R  W  T  G  S  M  S  L  F  Q   : G  L  Q  L  Y  I  Q  I  Q  T  L  *  K  N  S  L  L  L  P  I  *  E  T  D  K  M  V  K  S  L  A  V  E  T  A  E  I  L  K  A  L  Q  V  V  *  Q  E  P  Y  R  L  S  Q  E  M  L  *  :  P  N  Q  E  K  L  L  V  P  V  W  L  M  I  R  E  I  E  K  N  M  I  L  G  L  K  S  G  M  Q  *  A  P  L  R  L  C  L  Q  F  T  A  T  T  E  V  G  W  *  N  K  K  G  L  L  R  Q  R  G  I  *  I  V  I  Q  S  Q  W  H  H  V  E  W  L  L  S  *  P  Q  I  L  L  *  I  L  I  A  T  H  S  I  *  C  E  L  E  L  Q  N  Q  I  V  L  M  T  E  S  P  *  T  Q  T  Y  C  R  L  N  P  N  M  V  E  L  E  L  R  R  Q  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42965" stop="43051"/>
                    <exon start="43164" stop="43375"/>
                    <exon start="43459" stop="43560"/>
                    <exon start="44213" stop="44382"/>
                    <exon start="44490" stop="44881"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFPNADPLSLKLLERLLAFDPKDRPTAEEALADPYFKGLAKSEREPSCKSISKMEFEFERRRVTKEDLRELIFREILEYHPQLRKDYLNGVERTNFLYPSAVDQFRKQFAHLEENGGNGVPVVPMDRKHVSLPRSTVVHSNPNPLKEQPIVANMRDRQNGEESCSRNCRDSEGLASSLTRTLQAQPRNALAKPGKVVGPGLAYDSGNREKYDPRSQVRNAVGPPQIMSSVYSYDRSGVVKQERSVETERDMNCHSKPMAPCGMAAKLAPDIAINIDSNPFYMMRAGVTKPDRVDDRITIDTNLLQAKSQYGGIGVAAAAAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="55074" PGL_stop="55651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55074" e_stop="55651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55074" e_stop="55651" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55074" stop="55651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55129" stop="55566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAATTAGAGAAGAGGGTTAAGGAAATGATTGAGAAAGCCGCAGAGTTGGAGAAGAAATTGATGGAGAAGGAAAGGATTATTGCTGAAAGATTTGTTGCTAGCAATATTAATGGCATTCCTGTGGGTGATGATAGCGTTGGTTTTCTTGGTGGTGATGTAAACTTGCCAGTGGTTGCTGCATCATCTGTTGTCGCAGTTGCAGTGATTGGCGTTATTTGCTATCTTCGATACGGACGAAAAGCGTAAACCCTTAGCTTGATCTTCAATAAGTTTTAGTCTTTTTGGTTTTGTGCTGATCAAGCTTTGGAATTTACAGTTTTGATAGTTCTTTGGTTATGTTGGATTATTAGTTAACTTTTTGATCATAATCAGATAATAGATTACACTATTATGGTGCTGAAATATGTTTGTTTGTTAAGCTGGAGATAGTTGACATACTTGTAATAGTGCTTCTTTCTCATTTCTATGAATTTGATTACAATGGTTTTGTAGTTCTTTCCTTGGTGATGTAATTGCTTATAAGAGTTGCTGAATCTGTATGTTATAGTGTGTTTAAGTCGAATGATTGAATTGCTT</gDNA_template>
            <first_frame> R  N  *  R  R  G  L  R  K  *  L  R  K  P  Q  S  W  R  R  N  *  W  R  R  K  G  L  L  L  K  D  L  L  L  A  I  L  M  A  F  L  W  V  M  I  A  L  V  F  L  V  V  M  *  T  C  Q  W  L  L  H  H  L  L  S  Q  L  Q  *  L  A  L  F  A  I  F  D  T  D  E  K  R  K  P  L  A  *  S  S  I  S  F  S  L  F  G  F  V  L  I  K  L  W  N  L  Q  F  *  *  F  F  G  Y  V  G  L  L  V  N  F  L  I  I  I  R  *  *  I  T  L  L  W  C  *  N  M  F  V  C  *  A  G  D  S  *  H  T  C  N  S  A  S  F  S  F  L  *  I  *  L  Q  W  F  C  S  S  F  L  G  D  V  I  A  Y  K  S  C  *  I  C  M  L  *  C  V  *  V  E  *  L  N  C   </first_frame>
            <second_frame>  G  I  R  E  E  G  *  G  N  D  *  E  S  R  R  V  G  E  E  I  D  G  E  G  K  D  Y  C  *  K  I  C  C  *  Q  Y  *  W  H  S  C  G  *  *  *  R  W  F  S  W  W  *  C  K  L  A  S  G  C  C  I  I  C  C  R  S  C  S  D  W  R  Y  L  L  S  S  I  R  T  K  S  V  N  P  *  L  D  L  Q  *  V  L  V  F  L  V  L  C  *  S  S  F  G  I  Y  S  F  D  S  S  L  V  M  L  D  Y  *  L  T  F  *  S  *  S  D  N  R  L  H  Y  Y  G  A  E  I  C  L  F  V  K  L  E  I  V  D  I  L  V  I  V  L  L  S  H  F  Y  E  F  D  Y  N  G  F  V  V  L  S  L  V  M  *  L  L  I  R  V  A  E  S  V  C  Y  S  V  F  K  S  N  D  *  I  A  </second_frame>
            <third_frame>   E  L  E  K  R  V  K  E  M  I  E  K  A  A  E  L  E  K  K  L  M  E  K  E  R  I  I  A  E  R  F  V  A  S  N  I  N  G  I  P  V  G  D  D  S  V  G  F  L  G  G  D  V  N  L  P  V  V  A  A  S  S  V  V  A  V  A  V  I  G  V  I  C  Y  L  R  Y  G  R  K  A  *  T  L  S  L  I  F  N  K  F  *  S  F  W  F  C  A  D  Q  A  L  E  F  T  V  L  I  V  L  W  L  C  W  I  I  S  *  L  F  D  H  N  Q  I  I  D  Y  T  I  M  V  L  K  Y  V  C  L  L  S  W  R  *  L  T  Y  L  *  *  C  F  F  L  I  S  M  N  L  I  T  M  V  L  *  F  F  P  W  *  C  N  C  L  *  E  L  L  N  L  Y  V  I  V  C  L  S  R  M  I  E  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55076" stop="55321"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELEKRVKEMIEKAAELEKKLMEKERIIAERFVASNINGIPVGDDSVGFLGGDVNLPVVAASSVVAVAVIGVICYLRYGRKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="57643" PGL_stop="58591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57643" e_stop="57754"/>
            <exon e_start="58267" e_stop="58591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57643" e_stop="57754" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="57755" i_stop="58266" i_length="512"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="58267" e_stop="58591" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57643" stop="57754"/>
              <exon start="58267" stop="58591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57643" stop="57754"/>
              <exon start="58267" stop="58591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57643" stop="57754"/>
              <exon start="58267" stop="58591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57643" stop="57754"/>
              <exon start="58267" stop="58591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTTTCTTCTTCTTTTCTCTGTGAAAATGCAAAATTCTCACTCGTTGTGAATCTGTGGATTAGGGTTTGTATCATCAGGGCCATGGCAATGCTGCTGCCTTTTCTCCCAAG : GCCAAGTAGGATTTAATCTTGCTCCAGAAGTTTTGAGGTATTCAACTGCAAAACCAAGTTGAATTTACTGGTCCTTTTGCTTTTCTGAAGCATGTAACCCTGAACCCCTAAGTACATTGTACTTAGTTAGGGAATGAAGCCATCGGTCCGTATAGCATATAAATCTTTGTAATTATAAAGAAGAAAATTTCTTTTGCATATTCCAGTTTTTCTTTCTCTGAATTTTGTCCTATTTATTCAAATTCTGTTGCTTAATCAGTGCAAAAGCATTGTTGTACATTTAAACAATATAATATCCTTTTAGACCTTTCATCAAAGGAAGAGC</gDNA_template>
            <first_frame> S  F  L  L  L  F  S  V  K  M  Q  N  S  H  S  L  *  I  C  G  L  G  F  V  S  S  G  P  W  Q  C  C  C  L  F  S  Q   : G  Q  V  G  F  N  L  A  P  E  V  L  R  Y  S  T  A  K  P  S  *  I  Y  W  S  F  C  F  S  E  A  C  N  P  E  P  L  S  T  L  Y  L  V  R  E  *  S  H  R  S  V  *  H  I  N  L  C  N  Y  K  E  E  N  F  F  C  I  F  Q  F  F  F  L  *  I  L  S  Y  L  F  K  F  C  C  L  I  S  A  K  A  L  L  Y  I  *  T  I  *  Y  P  F  R  P  F  I  K  G  R   </first_frame>
            <second_frame>  A  F  F  F  F  S  L  *  K  C  K  I  L  T  R  C  E  S  V  D  *  G  L  Y  H  Q  G  H  G  N  A  A  A  F  S  P  K  :  A  K  *  D  L  I  L  L  Q  K  F  *  G  I  Q  L  Q  N  Q  V  E  F  T  G  P  F  A  F  L  K  H  V  T  L  N  P  *  V  H  C  T  *  L  G  N  E  A  I  G  P  Y  S  I  *  I  F  V  I  I  K  K  K  I  S  F  A  Y  S  S  F  S  F  S  E  F  C  P  I  Y  S  N  S  V  A  *  S  V  Q  K  H  C  C  T  F  K  Q  Y  N  I  L  L  D  L  S  S  K  E  E  </second_frame>
            <third_frame>   L  S  S  S  F  L  C  E  N  A  K  F  S  L  V  V  N  L  W  I  R  V  C  I  I  R  A  M  A  M  L  L  P  F  L  P  R :   P  S  R  I  *  S  C  S  R  S  F  E  V  F  N  C  K  T  K  L  N  L  L  V  L  L  L  F  *  S  M  *  P  *  T  P  K  Y  I  V  L  S  *  G  M  K  P  S  V  R  I  A  Y  K  S  L  *  L  *  R  R  K  F  L  L  H  I  P  V  F  L  S  L  N  F  V  L  F  I  Q  I  L  L  L  N  Q  C  K  S  I  V  V  H  L  N  N  I  I  S  F  *  T  F  H  Q  R  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0220H02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="60686" PGL_stop="60116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60686" e_stop="60116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60686" e_stop="60116" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60686" stop="60116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGCACTCGTATTTCCATTCGATTACATCTTAGTAGTAAGTAGATAAAGCCAAATCTAATAAGAATGGCAATGTTCATGCCTAATTTTAACCTACAACATGATCCCATTTCCACGACACAAAACACAACTCAATATTGTCACCTTCGATCAACAATCGAAAAACGAAATTCCCCGTTTTTAGTTAGTTGGTCTTTCCCTCCTCCGGGGTACGTGAAAATCAACACAGATGGCAGTTTTATGCCTAAATCAGGAGAAGCGGGATACGGAGTCATTGCGCGTGATGACAAAGGAATGTGGCTAGGTGGATTCTATGGTCGACTTGATACGAAGTCAACGTCGAGTCTGACCCCAGAGTTGTGGGCTATTCACGAGGCCCTAAGACAAGTCAAACATTGCAACTTGAAAAAAGTGATTATTGAAACCGACTCGAATGAGGCCTTGATGTTGATAAGTCGTGCCAAAAAAGTAGATGCAAATCACCCTGATCATAAGGTGATAGAAGATTGTAGGATTCTATTGTCTGAGGTCGAGACATGTCTAATTCATACGTTGAGACAAGGTAATAACTG</gDNA_template>
            <first_frame> L  A  L  V  F  P  F  D  Y  I  L  V  V  S  R  *  S  Q  I  *  *  E  W  Q  C  S  C  L  I  L  T  Y  N  M  I  P  F  P  R  H  K  T  Q  L  N  I  V  T  F  D  Q  Q  S  K  N  E  I  P  R  F  *  L  V  G  L  S  L  L  R  G  T  *  K  S  T  Q  M  A  V  L  C  L  N  Q  E  K  R  D  T  E  S  L  R  V  M  T  K  E  C  G  *  V  D  S  M  V  D  L  I  R  S  Q  R  R  V  *  P  Q  S  C  G  L  F  T  R  P  *  D  K  S  N  I  A  T  *  K  K  *  L  L  K  P  T  R  M  R  P  *  C  *  *  V  V  P  K  K  *  M  Q  I  T  L  I  I  R  *  *  K  I  V  G  F  Y  C  L  R  S  R  H  V  *  F  I  R  *  D  K  V  I  T  </first_frame>
            <second_frame>  *  H  S  Y  F  H  S  I  T  S  *  *  *  V  D  K  A  K  S  N  K  N  G  N  V  H  A  *  F  *  P  T  T  *  S  H  F  H  D  T  K  H  N  S  I  L  S  P  S  I  N  N  R  K  T  K  F  P  V  F  S  *  L  V  F  P  S  S  G  V  R  E  N  Q  H  R  W  Q  F  Y  A  *  I  R  R  S  G  I  R  S  H  C  A  *  *  Q  R  N  V  A  R  W  I  L  W  S  T  *  Y  E  V  N  V  E  S  D  P  R  V  V  G  Y  S  R  G  P  K  T  S  Q  T  L  Q  L  E  K  S  D  Y  *  N  R  L  E  *  G  L  D  V  D  K  S  C  Q  K  S  R  C  K  S  P  *  S  *  G  D  R  R  L  *  D  S  I  V  *  G  R  D  M  S  N  S  Y  V  E  T  R  *  *  L </second_frame>
            <third_frame>   S  T  R  I  S  I  R  L  H  L  S  S  K  *  I  K  P  N  L  I  R  M  A  M  F  M  P  N  F  N  L  Q  H  D  P  I  S  T  T  Q  N  T  T  Q  Y  C  H  L  R  S  T  I  E  K  R  N  S  P  F  L  V  S  W  S  F  P  P  P  G  Y  V  K  I  N  T  D  G  S  F  M  P  K  S  G  E  A  G  Y  G  V  I  A  R  D  D  K  G  M  W  L  G  G  F  Y  G  R  L  D  T  K  S  T  S  S  L  T  P  E  L  W  A  I  H  E  A  L  R  Q  V  K  H  C  N  L  K  K  V  I  I  E  T  D  S  N  E  A  L  M  L  I  S  R  A  K  K  V  D  A  N  H  P  D  H  K  V  I  E  D  C  R  I  L  L  S  E  V  E  T  C  L  I  H  T  L  R  Q  G  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60642" stop="60118"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKPNLIRMAMFMPNFNLQHDPISTTQNTTQYCHLRSTIEKRNSPFLVSWSFPPPGYVKINTDGSFMPKSGEAGYGVIARDDKGMWLGGFYGRLDTKSTSSLTPELWAIHEALRQVKHCNLKKVIIETDSNEALMLISRAKKVDANHPDHKVIEDCRILLSEVETCLIHTLRQGNN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="65581" PGL_stop="62405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65581" e_stop="65504"/>
            <exon e_start="65289" e_stop="65171"/>
            <exon e_start="65004" e_stop="64900"/>
            <exon e_start="64798" e_stop="64596"/>
            <exon e_start="64188" e_stop="64065"/>
            <exon e_start="63951" e_stop="63767"/>
            <exon e_start="62712" e_stop="62405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.584" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65581" e_stop="65504" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.919">
            <gDNA_intron_boundary i_start="65503" i_stop="65290" i_length="214"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65289" e_stop="65171" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="65170" i_stop="65005" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65004" e_stop="64900" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.880" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64899" i_stop="64799" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64798" e_stop="64596" e_length="203"/>
          </exon>
          <intron i_serial="4" don_prob="0.584" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64595" i_stop="64189" i_length="407"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64188" e_stop="64065" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.962">
            <gDNA_intron_boundary i_start="64064" i_stop="63952" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63951" e_stop="63767" e_length="185"/>
          </exon>
          <intron i_serial="6" don_prob="0.740" acc_prob="0.935">
            <gDNA_intron_boundary i_start="63766" i_stop="62713" i_length="1054"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="62712" e_stop="62405" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65581" stop="65504"/>
              <exon start="65289" stop="65171"/>
              <exon start="65004" stop="64900"/>
              <exon start="64798" stop="64596"/>
              <exon start="64188" stop="64156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65563" stop="65504"/>
              <exon start="65289" stop="65171"/>
              <exon start="65004" stop="64900"/>
              <exon start="64798" stop="64596"/>
              <exon start="64188" stop="64065"/>
              <exon start="63951" stop="63816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64673" stop="64596"/>
              <exon start="64188" stop="64065"/>
              <exon start="63951" stop="63767"/>
              <exon start="62712" stop="62456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64163" stop="64065"/>
              <exon start="63951" stop="63767"/>
              <exon start="62712" stop="62406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64162" stop="64065"/>
              <exon start="63951" stop="63767"/>
              <exon start="62712" stop="62405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64162" stop="64065"/>
              <exon start="63951" stop="63767"/>
              <exon start="62712" stop="62405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAGCGTTACACTGGCTACACTGGTCCCTCGGCCAGGCGAATATGGGATGCTATATACTCGGAGAATTGTCCAAAAT : ATGCATCTGGAGAGATTTGCCAGGAGAAAAAGGTTTTATACAAACTTATATCTGGTCTCCACTCCTCAATCTCAATACACATAGCTGCTGATTACCTGCTTGATGAAACTAAAAACCAG : TGGGGTACAAATCCAGATCTGATGTATGATCGTGTTCTACAATATCCTGAACGTGTCCGAAACTTGTATTTTACTTTCCTCTTTGTTCTCCGAGCTGTAACAAAA : GCAAAAGATTACTTGGAGCAAGCTGAGTATGATACTGGCAATCCTGAGGAAGACCTTAAAGCACAGTCCCTTATTCGACAGCTACTATACAACCCCAAACTGCAGGCTGCATGTCCAGTTCCGTTTGACGAAGCTAAACTGTGGAAAGGCCAAAGTGGACCTGAGCTAAAGCAGCAGATTCAAAAGCAATTCAGGAATATTAG : TGCTCTCATGGATTGTGTAGGATGTGAGAAATGTCGACTGTGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCAGTTGATGGTGAATATCGTCAAGATCAACAT : CTGCAGTTGCAAAGAAATGAAGTGATTGCTCTTGTAAACCTACTTAATCGGCTATCAGAATCTATCAAGCTAGTACAGGAAATGAGCCCTACATATGAGAAGACAATGAAGGGGCTAAGTCTACAGCCAGCTGCTAAGTTTATAAGTTCGTGGAATAGACTATTGAAAACTGTACTAGGAGATAG : GTTGAGGAAGCTTACATGATATTGATATAATTTTGGTGTACAATGATGTAAAGAATGAATACAACTAAACTATTGAAAGGTGAGAAGATTTCTACAGCCGGATAGCATACAGGGATACACGGATTTATCGCGGGAACAGTGTTCGAAATTTGGAAATACAGAATCCATTACTAGGTGAACTGGAAAATTAGTAGTGTTCTGTCACTTGATCATGTGTAACTTTGAAATGTTGTAACATTATTGTTGAAACTATATCTCTGTGTTTCCTCAATGAGAAGTGACAATTTTGCTCCTAATATGAAGACAAT</gDNA_template>
            <first_frame> R  S  V  T  L  A  T  L  V  P  R  P  G  E  Y  G  M  L  Y  T  R  R  I  V  Q  N  :  M  H  L  E  R  F  A  R  R  K  R  F  Y  T  N  L  Y  L  V  S  T  P  Q  S  Q  Y  T  *  L  L  I  T  C  L  M  K  L  K  T  S :   G  V  Q  I  Q  I  *  C  M  I  V  F  Y  N  I  L  N  V  S  E  T  C  I  L  L  S  S  L  F  S  E  L  *  Q  K :   Q  K  I  T  W  S  K  L  S  M  I  L  A  I  L  R  K  T  L  K  H  S  P  L  F  D  S  Y  Y  T  T  P  N  C  R  L  H  V  Q  F  R  L  T  K  L  N  C  G  K  A  K  V  D  L  S  *  S  S  R  F  K  S  N  S  G  I  L   : V  L  S  W  I  V  *  D  V  R  N  V  D  C  G  E  S  S  R  F  L  V  L  E  L  H  *  R  F  S  S  Q  L  M  V  N  I  V  K  I  N  I :   C  S  C  K  E  M  K  *  L  L  L  *  T  Y  L  I  G  Y  Q  N  L  S  S  *  Y  R  K  *  A  L  H  M  R  R  Q  *  R  G  *  V  Y  S  Q  L  L  S  L  *  V  R  G  I  D  Y  *  K  L  Y  *  E  I   : G  *  G  S  L  H  D  I  D  I  I  L  V  Y  N  D  V  K  N  E  Y  N  *  T  I  E  R  *  E  D  F  Y  S  R  I  A  Y  R  D  T  R  I  Y  R  G  N  S  V  R  N  L  E  I  Q  N  P  L  L  G  E  L  E  N  *  *  C  S  V  T  *  S  C  V  T  L  K  C  C  N  I  I  V  E  T  I  S  L  C  F  L  N  E  K  *  Q  F  C  S  *  Y  E  D  N </first_frame>
            <second_frame>  G  A  L  H  W  L  H  W  S  L  G  Q  A  N  M  G  C  Y  I  L  G  E  L  S  K  I :   C  I  W  R  D  L  P  G  E  K  G  F  I  Q  T  Y  I  W  S  P  L  L  N  L  N  T  H  S  C  *  L  P  A  *  *  N  *  K  P   : V  G  Y  K  S  R  S  D  V  *  S  C  S  T  I  S  *  T  C  P  K  L  V  F  Y  F  P  L  C  S  P  S  C  N  K   : S  K  R  L  L  G  A  S  *  V  *  Y  W  Q  S  *  G  R  P  *  S  T  V  P  Y  S  T  A  T  I  Q  P  Q  T  A  G  C  M  S  S  S  V  *  R  S  *  T  V  E  R  P  K  W  T  *  A  K  A  A  D  S  K  A  I  Q  E  Y  *  :  C  S  H  G  L  C  R  M  *  E  M  S  T  V  G  K  A  P  G  S  W  S  W  N  C  I  K  D  S  L  L  S  *  W  *  I  S  S  R  S  T   : S  A  V  A  K  K  *  S  D  C  S  C  K  P  T  *  S  A  I  R  I  Y  Q  A  S  T  G  N  E  P  Y  I  *  E  D  N  E  G  A  K  S  T  A  S  C  *  V  Y  K  F  V  E  *  T  I  E  N  C  T  R  R  *  :  V  E  E  A  Y  M  I  L  I  *  F  W  C  T  M  M  *  R  M  N  T  T  K  L  L  K  G  E  K  I  S  T  A  G  *  H  T  G  I  H  G  F  I  A  G  T  V  F  E  I  W  K  Y  R  I  H  Y  *  V  N  W  K  I  S  S  V  L  S  L  D  H  V  *  L  *  N  V  V  T  L  L  L  K  L  Y  L  C  V  S  S  M  R  S  D  N  F  A  P  N  M  K  T   </second_frame>
            <third_frame>   E  R  Y  T  G  Y  T  G  P  S  A  R  R  I  W  D  A  I  Y  S  E  N  C  P  K   : Y  A  S  G  E  I  C  Q  E  K  K  V  L  Y  K  L  I  S  G  L  H  S  S  I  S  I  H  I  A  A  D  Y  L  L  D  E  T  K  N  Q  :  W  G  T  N  P  D  L  M  Y  D  R  V  L  Q  Y  P  E  R  V  R  N  L  Y  F  T  F  L  F  V  L  R  A  V  T  K  :  A  K  D  Y  L  E  Q  A  E  Y  D  T  G  N  P  E  E  D  L  K  A  Q  S  L  I  R  Q  L  L  Y  N  P  K  L  Q  A  A  C  P  V  P  F  D  E  A  K  L  W  K  G  Q  S  G  P  E  L  K  Q  Q  I  Q  K  Q  F  R  N  I  S :   A  L  M  D  C  V  G  C  E  K  C  R  L  W  G  K  L  Q  V  L  G  L  G  T  A  L  K  I  L  F  S  V  D  G  E  Y  R  Q  D  Q  H  :  L  Q  L  Q  R  N  E  V  I  A  L  V  N  L  L  N  R  L  S  E  S  I  K  L  V  Q  E  M  S  P  T  Y  E  K  T  M  K  G  L  S  L  Q  P  A  A  K  F  I  S  S  W  N  R  L  L  K  T  V  L  G  D  R :   L  R  K  L  T  *  Y  *  Y  N  F  G  V  Q  *  C  K  E  *  I  Q  L  N  Y  *  K  V  R  R  F  L  Q  P  D  S  I  Q  G  Y  T  D  L  S  R  E  Q  C  S  K  F  G  N  T  E  S  I  T  R  *  T  G  K  L  V  V  F  C  H  L  I  M  C  N  F  E  M  L  *  H  Y  C  *  N  Y  I  S  V  F  P  Q  *  E  V  T  I  L  L  L  I  *  R  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65579" stop="65504"/>
                    <exon start="65289" stop="65171"/>
                    <exon start="65004" stop="64900"/>
                    <exon start="64798" stop="64596"/>
                    <exon start="64188" stop="64065"/>
                    <exon start="63951" stop="63767"/>
                    <exon start="62712" stop="62694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERYTGYTGPSARRIWDAIYSENCPKYASGEICQEKKVLYKLISGLHSSISIHIAADYLLDETKNQWGTNPDLMYDRVLQYPERVRNLYFTFLFVLRAVTKAKDYLEQAEYDTGNPEEDLKAQSLIRQLLYNPKLQAACPVPFDEAKLWKGQSGPELKQQIQKQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVDGEYRQDQHLQLQRNEVIALVNLLNRLSESIKLVQEMSPTYEKTMKGLSLQPAAKFISSWNRLLKTVLGDRLRKLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="67839" PGL_stop="65598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67839" e_stop="67515"/>
            <exon e_start="66756" e_stop="66625"/>
            <exon e_start="66167" e_stop="65912"/>
            <exon e_start="65614" e_stop="65598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.901" acc_prob="0.986" e_score="0.994"/>
          <exon-intron don_prob="0.906" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.989" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="67839" e_stop="67515" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.901" acc_prob="0.986">
            <gDNA_intron_boundary i_start="67514" i_stop="66757" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66756" e_stop="66625" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.906" acc_prob="0.952">
            <gDNA_intron_boundary i_start="66624" i_stop="66168" i_length="457"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="66167" e_stop="65912" e_length="256"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.989">
            <gDNA_intron_boundary i_start="65911" i_stop="65615" i_length="297"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65614" e_stop="65598" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67839" stop="67515"/>
              <exon start="66756" stop="66625"/>
              <exon start="66167" stop="66129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67764" stop="67515"/>
              <exon start="66756" stop="66625"/>
              <exon start="66167" stop="65978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67696" stop="67515"/>
              <exon start="66756" stop="66625"/>
              <exon start="66167" stop="65912"/>
              <exon start="65614" stop="65598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCATCGGTTCTTCAAATATAACGGCTTCGATTCTGCGAATTAACAGTAGTTGACACTGAAATTCGTTTCATAATTCAACGAATAAGAGTTTAATTAGTGTTTTTTTGATTTTTTTGGGTCGAAGATTTTAGGGGTTTTGTGGAAGAATTGTTGTGATGGTGGAAGAAAATGAAGTTAACGAGCTGAAGAAGACGGAGAATGAGAAGAGGAGAAGTGGGTGGCGATTGGGTCGATCAGCAATTGCAGCGATTTTGGTGTTGATGATAGCATTTGGTGTGACTTTTTTGTATACAGAGGAGGGAAAATCATGTCCTTGTTTTCAG : GACTCTAGAAAATATACTGGGATAGTTGAAGACTGTTGTTGTGATTATGAAACCGTTGACGCTATTAATGGCGCTGTGCTGCATCCTTTACTCCAAGGGCTTGTTACAACTCCCTTCTTTAGATACTTTAAG : GTTAAGCTGTGGTGTGACTGCCCTTTTTGGCCTGATGATGGTATGTGTAAGTTACGAGATTGCAGTGTATGCGAATGTCCAGAAACTGAGTTCCCCGAATCTTTTAGGAGACCTCCACTTGGCCTTGCTGCTGATGATCTGAAATGCCAAGAGGGAAAACCAGAGGCAGCTGTTGACCGCACTCTCGACTCCAAGGTTTTTAGGGGATGGATAGAGGTAGATAATCCTTGGACAGTTGATGATGAAACAGATAATG : GTGAGATGACATATGTC</gDNA_template>
            <first_frame> I  H  R  F  F  K  Y  N  G  F  D  S  A  N  *  Q  *  L  T  L  K  F  V  S  *  F  N  E  *  E  F  N  *  C  F  F  D  F  F  G  S  K  I  L  G  V  L  W  K  N  C  C  D  G  G  R  K  *  S  *  R  A  E  E  D  G  E  *  E  E  E  K  W  V  A  I  G  S  I  S  N  C  S  D  F  G  V  D  D  S  I  W  C  D  F  F  V  Y  R  G  G  K  I  M  S  L  F  S   : G  L  *  K  I  Y  W  D  S  *  R  L  L  L  *  L  *  N  R  *  R  Y  *  W  R  C  A  A  S  F  T  P  R  A  C  Y  N  S  L  L  *  I  L  *   : G  *  A  V  V  *  L  P  F  L  A  *  *  W  Y  V  *  V  T  R  L  Q  C  M  R  M  S  R  N  *  V  P  R  I  F  *  E  T  S  T  W  P  C  C  *  *  S  E  M  P  R  G  K  T  R  G  S  C  *  P  H  S  R  L  Q  G  F  *  G  M  D  R  G  R  *  S  L  D  S  *  *  *  N  R  *  W :   *  D  D  I  C  </first_frame>
            <second_frame>  F  I  G  S  S  N  I  T  A  S  I  L  R  I  N  S  S  *  H  *  N  S  F  H  N  S  T  N  K  S  L  I  S  V  F  L  I  F  L  G  R  R  F  *  G  F  C  G  R  I  V  V  M  V  E  E  N  E  V  N  E  L  K  K  T  E  N  E  K  R  R  S  G  W  R  L  G  R  S  A  I  A  A  I  L  V  L  M  I  A  F  G  V  T  F  L  Y  T  E  E  G  K  S  C  P  C  F  Q  :  D  S  R  K  Y  T  G  I  V  E  D  C  C  C  D  Y  E  T  V  D  A  I  N  G  A  V  L  H  P  L  L  Q  G  L  V  T  T  P  F  F  R  Y  F  K  :  V  K  L  W  C  D  C  P  F  W  P  D  D  G  M  C  K  L  R  D  C  S  V  C  E  C  P  E  T  E  F  P  E  S  F  R  R  P  P  L  G  L  A  A  D  D  L  K  C  Q  E  G  K  P  E  A  A  V  D  R  T  L  D  S  K  V  F  R  G  W  I  E  V  D  N  P  W  T  V  D  D  E  T  D  N   : G  E  M  T  Y  V </second_frame>
            <third_frame>   S  S  V  L  Q  I  *  R  L  R  F  C  E  L  T  V  V  D  T  E  I  R  F  I  I  Q  R  I  R  V  *  L  V  F  F  *  F  F  W  V  E  D  F  R  G  F  V  E  E  L  L  *  W  W  K  K  M  K  L  T  S  *  R  R  R  R  M  R  R  G  E  V  G  G  D  W  V  D  Q  Q  L  Q  R  F  W  C  *  *  *  H  L  V  *  L  F  C  I  Q  R  R  E  N  H  V  L  V  F  R :   T  L  E  N  I  L  G  *  L  K  T  V  V  V  I  M  K  P  L  T  L  L  M  A  L  C  C  I  L  Y  S  K  G  L  L  Q  L  P  S  L  D  T  L  R :   L  S  C  G  V  T  A  L  F  G  L  M  M  V  C  V  S  Y  E  I  A  V  Y  A  N  V  Q  K  L  S  S  P  N  L  L  G  D  L  H  L  A  L  L  L  M  I  *  N  A  K  R  E  N  Q  R  Q  L  L  T  A  L  S  T  P  R  F  L  G  D  G  *  R  *  I  I  L  G  Q  L  M  M  K  Q  I  M  :  V  R  *  H  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67706" stop="67515"/>
                    <exon start="66756" stop="66625"/>
                    <exon start="66167" stop="65912"/>
                    <exon start="65614" stop="65598"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCGRIVVMVEENEVNELKKTENEKRRSGWRLGRSAIAAILVLMIAFGVTFLYTEEGKSCPCFQDSRKYTGIVEDCCCDYETVDAINGAVLHPLLQGLVTTPFFRYFKVKLWCDCPFWPDDGMCKLRDCSVCECPETEFPESFRRPPLGLAADDLKCQEGKPEAAVDRTLDSKVFRGWIEVDNPWTVDDETDNGEMTYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="72606" PGL_stop="72285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72606" e_stop="72285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72606" e_stop="72285" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72606" stop="72434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72604" stop="72285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAAAATGGGAGATGAAGTAGTATTGCTTGATTTATGGGTTAGTCCCTTTGGTATGAGGGTGAGAATTGCCCTGAAAGAAAAGGGCATAAATTATGAATCCAAGGAAGAAAATTTGAGCAACAAGAGCTCATTGCTCCTAAAAATGAACCCTATCCATAAGCAAATCCCAGTTTTAATTCACAATGGAAAGCCTATTTGTGAATCCCTCATCATTGTTCAGTACATTGATGAAGTTTGGAAGGACAAAGCTCCACTCTTACCTTCTGATCCTTATGAAAGAGCCCATGCTAAATTTTGGGCTGATTATGTTGACAAAAAG</gDNA_template>
            <first_frame> S  K  N  G  R  *  S  S  I  A  *  F  M  G  *  S  L  W  Y  E  G  E  N  C  P  E  R  K  G  H  K  L  *  I  Q  G  R  K  F  E  Q  Q  E  L  I  A  P  K  N  E  P  Y  P  *  A  N  P  S  F  N  S  Q  W  K  A  Y  L  *  I  P  H  H  C  S  V  H  *  *  S  L  E  G  Q  S  S  T  L  T  F  *  S  L  *  K  S  P  C  *  I  L  G  *  L  C  *  Q  K  </first_frame>
            <second_frame>  Q  K  M  G  D  E  V  V  L  L  D  L  W  V  S  P  F  G  M  R  V  R  I  A  L  K  E  K  G  I  N  Y  E  S  K  E  E  N  L  S  N  K  S  S  L  L  L  K  M  N  P  I  H  K  Q  I  P  V  L  I  H  N  G  K  P  I  C  E  S  L  I  I  V  Q  Y  I  D  E  V  W  K  D  K  A  P  L  L  P  S  D  P  Y  E  R  A  H  A  K  F  W  A  D  Y  V  D  K  K </second_frame>
            <third_frame>   K  K  W  E  M  K  *  Y  C  L  I  Y  G  L  V  P  L  V  *  G  *  E  L  P  *  K  K  R  A  *  I  M  N  P  R  K  K  I  *  A  T  R  A  H  C  S  *  K  *  T  L  S  I  S  K  S  Q  F  *  F  T  M  E  S  L  F  V  N  P  S  S  L  F  S  T  L  M  K  F  G  R  T  K  L  H  S  Y  L  L  I  L  M  K  E  P  M  L  N  F  G  L  I  M  L  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72605" stop="72285"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKMGDEVVLLDLWVSPFGMRVRIALKEKGINYESKEENLSNKSSLLLKMNPIHKQIPVLIHNGKPICESLIIVQYIDEVWKDKAPLLPSDPYERAHAKFWADYVDKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="80344" PGL_stop="73141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80344" e_stop="79482"/>
            <exon e_start="78845" e_stop="78720"/>
            <exon e_start="73750" e_stop="73615"/>
            <exon e_start="73537" e_stop="73141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.416" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80344" e_stop="79482" e_length="863"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.416">
            <gDNA_intron_boundary i_start="79481" i_stop="78846" i_length="636"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78845" e_stop="78720" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78719" i_stop="73751" i_length="4969"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73750" e_stop="73615" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="73614" i_stop="73538" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="73537" e_stop="73141" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80344" stop="79633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80344" stop="79840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80103" stop="79552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80057" stop="79482"/>
              <exon start="78845" stop="78809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79555" stop="79482"/>
              <exon start="78845" stop="78720"/>
              <exon start="73750" stop="73615"/>
              <exon start="73537" stop="73141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369217" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTCTCAGGTTTCTCCTAAAATCTTGCAAGAAGTGTTGTCAGAAAAGGTGTACATCCTTTTCTTCTCTCGTACCAAACAGAGGTCACCATCCACCAAGACATGTTTATCAATTAATGGATCAAAATCCAATCACTCCAATGGCTTGGCTAAATCCAAAATCTTGACCAGTGACTTAGCAAAAACAGTAAACGAAAAGCAAGTTTTAGGCCACCCCTCCGAGAAAGAAAATGTAGTGATGTCTAAGGTCAGTAAAGTGCATTCGAGCCCAGTGCGAGATTTGGGCATATTTGAAAAATCTTCCTTCAAGAGACCTACCTCTGGTAATATCAAAATGGTTTTTCATTCAAAAGAATCTGGCAATAGAACTGGTGATGTGAGAGCATCAGTTCTTACAGAGAAAAAGATTACATCATTATCAAACAAGAATGGTGTTAGCAAAAGTTGTGGTAATGGCCAAGGGACAAGATCACATGCCTTAACAAATGGAAATGGAAATGGAAAACTTCCAATTGTAGCAACCAGCCCTGTAGCAGACGGTCCCCATGAAGATTATGGTGGAAGTAATGGAAAGGCTGCAGGAAAGGATTCATACCACAAAGAGGTGAATAGATCATCATCTTTAGCAAATGGAAATGGTAAAATTCAAAGTGTTGCAACGGATACCTTGAGGGGAAGTCTGCATAGAAATAATGGGGAGAATAGTGAAAGCCTGGCAGCAATATCTTCTGCATACAGGGATACATCCAATGGCCATGTTGAATCGTCTTCTATCTCAGGTTCAAAGAGAAAATCACCAGATCAGTGCATCTTGCTTGAGTATGATGTTCAGTCTCGTGCAAAGGTGGAAGAATTAAAAAAAGA : GCTCCATCAGGAAGCTTCATCATTTCTAAGAACATGTGGTTGGTCAGAAGAAGTTTATGCTTTTATGCGTTCCAAAAAGTCGGGGACACAATCAAACTTTCAAGCATCAGATGTTAATGCGATGAA : GGAGTTGTTGATTGCAGATGCCAAATCAATGTTTATCTCACAAATTCCTCAATCATTGAAGGGCAGTCTTATTGAACGTTTAACATCATTTAGTCAAGGAACACCACCCTCCAGTACCTAAGCACACTTGGACATG : TCCATTGACGAAGGTGCTGATTTTCTTGGCCTGTATTCTTTGTCAGTTGGAGATGGAATGTCTGTTTGCGCAGACGATTATAAGTTGTCTTTGATTTTCTTCAGTCAGCTGTACTGTATCACCAAATGTGTTCATTCAGGTAAAAGAGGAAATCAAAGTGGCAACATCTTATTCCGGTAGACATATTTTCTTGAGAGGTAGGAGAGCCTATAGAAGCAGCGTAAATTCCTTTTGTGATGTATGATATATGCCCATTTTGCCGTAGTTTTTTAGCATGTAATCCTCATTTTATGGATGCTTACCAATTTTTTTCCATAAAATTGTGGTCGAGGTTGTATTGTTGAATCTGGAGATGAGGTTTCACTTTCGAACATACATACATTATAATACCATCCAT</gDNA_template>
            <first_frame> D  S  Q  V  S  P  K  I  L  Q  E  V  L  S  E  K  V  Y  I  L  F  F  S  R  T  K  Q  R  S  P  S  T  K  T  C  L  S  I  N  G  S  K  S  N  H  S  N  G  L  A  K  S  K  I  L  T  S  D  L  A  K  T  V  N  E  K  Q  V  L  G  H  P  S  E  K  E  N  V  V  M  S  K  V  S  K  V  H  S  S  P  V  R  D  L  G  I  F  E  K  S  S  F  K  R  P  T  S  G  N  I  K  M  V  F  H  S  K  E  S  G  N  R  T  G  D  V  R  A  S  V  L  T  E  K  K  I  T  S  L  S  N  K  N  G  V  S  K  S  C  G  N  G  Q  G  T  R  S  H  A  L  T  N  G  N  G  N  G  K  L  P  I  V  A  T  S  P  V  A  D  G  P  H  E  D  Y  G  G  S  N  G  K  A  A  G  K  D  S  Y  H  K  E  V  N  R  S  S  S  L  A  N  G  N  G  K  I  Q  S  V  A  T  D  T  L  R  G  S  L  H  R  N  N  G  E  N  S  E  S  L  A  A  I  S  S  A  Y  R  D  T  S  N  G  H  V  E  S  S  S  I  S  G  S  K  R  K  S  P  D  Q  C  I  L  L  E  Y  D  V  Q  S  R  A  K  V  E  E  L  K  K  E :   L  H  Q  E  A  S  S  F  L  R  T  C  G  W  S  E  E  V  Y  A  F  M  R  S  K  K  S  G  T  Q  S  N  F  Q  A  S  D  V  N  A  M  K :   E  L  L  I  A  D  A  K  S  M  F  I  S  Q  I  P  Q  S  L  K  G  S  L  I  E  R  L  T  S  F  S  Q  G  T  P  P  S  S  T  *  A  H  L  D  M  :  S  I  D  E  G  A  D  F  L  G  L  Y  S  L  S  V  G  D  G  M  S  V  C  A  D  D  Y  K  L  S  L  I  F  F  S  Q  L  Y  C  I  T  K  C  V  H  S  G  K  R  G  N  Q  S  G  N  I  L  F  R  *  T  Y  F  L  E  R  *  E  S  L  *  K  Q  R  K  F  L  L  *  C  M  I  Y  A  H  F  A  V  V  F  *  H  V  I  L  I  L  W  M  L  T  N  F  F  P  *  N  C  G  R  G  C  I  V  E  S  G  D  E  V  S  L  S  N  I  H  T  L  *  Y  H  P  </first_frame>
            <second_frame>  I  L  R  F  L  L  K  S  C  K  K  C  C  Q  K  R  C  T  S  F  S  S  L  V  P  N  R  G  H  H  P  P  R  H  V  Y  Q  L  M  D  Q  N  P  I  T  P  M  A  W  L  N  P  K  S  *  P  V  T  *  Q  K  Q  *  T  K  S  K  F  *  A  T  P  P  R  K  K  M  *  *  C  L  R  S  V  K  C  I  R  A  Q  C  E  I  W  A  Y  L  K  N  L  P  S  R  D  L  P  L  V  I  S  K  W  F  F  I  Q  K  N  L  A  I  E  L  V  M  *  E  H  Q  F  L  Q  R  K  R  L  H  H  Y  Q  T  R  M  V  L  A  K  V  V  V  M  A  K  G  Q  D  H  M  P  *  Q  M  E  M  E  M  E  N  F  Q  L  *  Q  P  A  L  *  Q  T  V  P  M  K  I  M  V  E  V  M  E  R  L  Q  E  R  I  H  T  T  K  R  *  I  D  H  H  L  *  Q  M  E  M  V  K  F  K  V  L  Q  R  I  P  *  G  E  V  C  I  E  I  M  G  R  I  V  K  A  W  Q  Q  Y  L  L  H  T  G  I  H  P  M  A  M  L  N  R  L  L  S  Q  V  Q  R  E  N  H  Q  I  S  A  S  C  L  S  M  M  F  S  L  V  Q  R  W  K  N  *  K  K   : S  S  I  R  K  L  H  H  F  *  E  H  V  V  G  Q  K  K  F  M  L  L  C  V  P  K  S  R  G  H  N  Q  T  F  K  H  Q  M  L  M  R  *   : R  S  C  *  L  Q  M  P  N  Q  C  L  S  H  K  F  L  N  H  *  R  A  V  L  L  N  V  *  H  H  L  V  K  E  H  H  P  P  V  P  K  H  T  W  T  C :   P  L  T  K  V  L  I  F  L  A  C  I  L  C  Q  L  E  M  E  C  L  F  A  Q  T  I  I  S  C  L  *  F  S  S  V  S  C  T  V  S  P  N  V  F  I  Q  V  K  E  E  I  K  V  A  T  S  Y  S  G  R  H  I  F  L  R  G  R  R  A  Y  R  S  S  V  N  S  F  C  D  V  *  Y  M  P  I  L  P  *  F  F  S  M  *  S  S  F  Y  G  C  L  P  I  F  F  H  K  I  V  V  E  V  V  L  L  N  L  E  M  R  F  H  F  R  T  Y  I  H  Y  N  T  I  H </second_frame>
            <third_frame>   F  S  G  F  S  *  N  L  A  R  S  V  V  R  K  G  V  H  P  F  L  L  S  Y  Q  T  E  V  T  I  H  Q  D  M  F  I  N  *  W  I  K  I  Q  S  L  Q  W  L  G  *  I  Q  N  L  D  Q  *  L  S  K  N  S  K  R  K  A  S  F  R  P  P  L  R  E  R  K  C  S  D  V  *  G  Q  *  S  A  F  E  P  S  A  R  F  G  H  I  *  K  I  F  L  Q  E  T  Y  L  W  *  Y  Q  N  G  F  S  F  K  R  I  W  Q  *  N  W  *  C  E  S  I  S  S  Y  R  E  K  D  Y  I  I  I  K  Q  E  W  C  *  Q  K  L  W  *  W  P  R  D  K  I  T  C  L  N  K  W  K  W  K  W  K  T  S  N  C  S  N  Q  P  C  S  R  R  S  P  *  R  L  W  W  K  *  W  K  G  C  R  K  G  F  I  P  Q  R  G  E  *  I  I  I  F  S  K  W  K  W  *  N  S  K  C  C  N  G  Y  L  E  G  K  S  A  *  K  *  W  G  E  *  *  K  P  G  S  N  I  F  C  I  Q  G  Y  I  Q  W  P  C  *  I  V  F  Y  L  R  F  K  E  K  I  T  R  S  V  H  L  A  *  V  *  C  S  V  S  C  K  G  G  R  I  K  K  R  :  A  P  S  G  S  F  I  I  S  K  N  M  W  L  V  R  R  S  L  C  F  Y  A  F  Q  K  V  G  D  T  I  K  L  S  S  I  R  C  *  C  D  E  :  G  V  V  D  C  R  C  Q  I  N  V  Y  L  T  N  S  S  I  I  E  G  Q  S  Y  *  T  F  N  I  I  *  S  R  N  T  T  L  Q  Y  L  S  T  L  G  H   : V  H  *  R  R  C  *  F  S  W  P  V  F  F  V  S  W  R  W  N  V  C  L  R  R  R  L  *  V  V  F  D  F  L  Q  S  A  V  L  Y  H  Q  M  C  S  F  R  *  K  R  K  S  K  W  Q  H  L  I  P  V  D  I  F  S  *  E  V  G  E  P  I  E  A  A  *  I  P  F  V  M  Y  D  I  C  P  F  C  R  S  F  L  A  C  N  P  H  F  M  D  A  Y  Q  F  F  S  I  K  L  W  S  R  L  Y  C  *  I  W  R  *  G  F  T  F  E  H  T  Y  I  I  I  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80344" stop="79482"/>
                    <exon start="78845" stop="78720"/>
                    <exon start="73750" stop="73630"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSQVSPKILQEVLSEKVYILFFSRTKQRSPSTKTCLSINGSKSNHSNGLAKSKILTSDLAKTVNEKQVLGHPSEKENVVMSKVSKVHSSPVRDLGIFEKSSFKRPTSGNIKMVFHSKESGNRTGDVRASVLTEKKITSLSNKNGVSKSCGNGQGTRSHALTNGNGNGKLPIVATSPVADGPHEDYGGSNGKAAGKDSYHKEVNRSSSLANGNGKIQSVATDTLRGSLHRNNGENSESLAAISSAYRDTSNGHVESSSISGSKRKSPDQCILLEYDVQSRAKVEELKKELHQEASSFLRTCGWSEEVYAFMRSKKSGTQSNFQASDVNAMKELLIADAKSMFISQIPQSLKGSLIERLTSFSQGTPPSST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73629" stop="73615"/>
                    <exon start="73537" stop="73358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHLDMSIDEGADFLGLYSLSVGDGMSVCADDYKLSLIFFSQLYCITKCVHSGKRGNQSGNILFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="90202" PGL_stop="87456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90202" e_stop="90081"/>
            <exon e_start="88786" e_stop="88679"/>
            <exon e_start="88600" e_stop="88566"/>
            <exon e_start="87859" e_stop="87456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90202" e_stop="90081" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.844">
            <gDNA_intron_boundary i_start="90080" i_stop="88787" i_length="1294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88786" e_stop="88679" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.918">
            <gDNA_intron_boundary i_start="88678" i_stop="88601" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88600" e_stop="88566" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.864" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88565" i_stop="87860" i_length="706"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87859" e_stop="87456" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90202" stop="90081"/>
              <exon start="88786" stop="88679"/>
              <exon start="88600" stop="88566"/>
              <exon start="87859" stop="87456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTGTGAGGGATTCATAAATGGCGGATCCGCAGAGAAAATGGGTGACCGACGATGTATTAACATACGCATATCTTCTCCTCTACATTGCACTCTCTAGTGGTCAGATCTTCTTCAACAAG : TGGGTTTTGTCTTCAAAAGAAGTAAACTTTCCTTATCCCCTTGGATTGACTCTGCTTCACATGGTCTTCTCCTCAATTCTATGTTTTATGCTTACCAAGGTTCTCAAG : ATAATGAAAGTTGAGGAAGGGATGACTCTAGATAT : ATACATTAGTTCGGTCATACCAATTGGTGCAATGTTTGCAATGACACTTTGGCTTGGGAACACTGCCTACCTTTATATTTCTGTTTCATTTGCTCAAATGTTGAAAGCAATCAGTAAGTAGTACTGTTATTAGCTGGCTTATGTACTGTAGACTATAGAAGGTAAAGGTAAATACAGCTTTAGGATATGATAGGGGAGCTGTCATGCGACACTTCATGCTTGATAGATGGCTTTAGAGGCTCGGCCGATGACCATTTGCTCAAGTACTTTTTTAATTTGTGCCAAGGGCATCATCTCTCTCTCTTTTGGTTTCTTCTGCAGTGCCAGTAGCAGTTTTCATTCTGGGGGTTGCAGCCGGACTTGAAATGATGAGCTGCAGAATGCTTCTCATAATGTCAGTAATC</gDNA_template>
            <first_frame> S  L  *  G  I  H  K  W  R  I  R  R  E  N  G  *  P  T  M  Y  *  H  T  H  I  F  S  S  T  L  H  S  L  V  V  R  S  S  S  T  S :   G  F  C  L  Q  K  K  *  T  F  L  I  P  L  D  *  L  C  F  T  W  S  S  P  Q  F  Y  V  L  C  L  P  R  F  S  R :   *  *  K  L  R  K  G  *  L  *  I   : Y  T  L  V  R  S  Y  Q  L  V  Q  C  L  Q  *  H  F  G  L  G  T  L  P  T  F  I  F  L  F  H  L  L  K  C  *  K  Q  S  V  S  S  T  V  I  S  W  L  M  Y  C  R  L  *  K  V  K  V  N  T  A  L  G  Y  D  R  G  A  V  M  R  H  F  M  L  D  R  W  L  *  R  L  G  R  *  P  F  A  Q  V  L  F  *  F  V  P  R  A  S  S  L  S  L  L  V  S  S  A  V  P  V  A  V  F  I  L  G  V  A  A  G  L  E  M  M  S  C  R  M  L  L  I  M  S  V  I </first_frame>
            <second_frame>  V  C  E  G  F  I  N  G  G  S  A  E  K  M  G  D  R  R  C  I  N  I  R  I  S  S  P  L  H  C  T  L  *  W  S  D  L  L  Q  Q   : V  G  F  V  F  K  R  S  K  L  S  L  S  P  W  I  D  S  A  S  H  G  L  L  L  N  S  M  F  Y  A  Y  Q  G  S  Q   : D  N  E  S  *  G  R  D  D  S  R  Y  :  I  H  *  F  G  H  T  N  W  C  N  V  C  N  D  T  L  A  W  E  H  C  L  P  L  Y  F  C  F  I  C  S  N  V  E  S  N  Q  *  V  V  L  L  L  A  G  L  C  T  V  D  Y  R  R  *  R  *  I  Q  L  *  D  M  I  G  E  L  S  C  D  T  S  C  L  I  D  G  F  R  G  S  A  D  D  H  L  L  K  Y  F  F  N  L  C  Q  G  H  H  L  S  L  F  W  F  L  L  Q  C  Q  *  Q  F  S  F  W  G  L  Q  P  D  L  K  *  *  A  A  E  C  F  S  *  C  Q  *   </second_frame>
            <third_frame>   F  V  R  D  S  *  M  A  D  P  Q  R  K  W  V  T  D  D  V  L  T  Y  A  Y  L  L  L  Y  I  A  L  S  S  G  Q  I  F  F  N  K  :  W  V  L  S  S  K  E  V  N  F  P  Y  P  L  G  L  T  L  L  H  M  V  F  S  S  I  L  C  F  M  L  T  K  V  L  K  :  I  M  K  V  E  E  G  M  T  L  D  I :   Y  I  S  S  V  I  P  I  G  A  M  F  A  M  T  L  W  L  G  N  T  A  Y  L  Y  I  S  V  S  F  A  Q  M  L  K  A  I  S  K  *  Y  C  Y  *  L  A  Y  V  L  *  T  I  E  G  K  G  K  Y  S  F  R  I  *  *  G  S  C  H  A  T  L  H  A  *  *  M  A  L  E  A  R  P  M  T  I  C  S  S  T  F  L  I  C  A  K  G  I  I  S  L  S  F  G  F  F  C  S  A  S  S  S  F  H  S  G  G  C  S  R  T  *  N  D  E  L  Q  N  A  S  H  N  V  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90182" stop="90081"/>
                    <exon start="88786" stop="88679"/>
                    <exon start="88600" stop="88566"/>
                    <exon start="87859" stop="87739"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MADPQRKWVTDDVLTYAYLLLYIALSSGQIFFNKWVLSSKEVNFPYPLGLTLLHMVFSSILCFMLTKVLKIMKVEEGMTLDIYISSVIPIGAMFAMTLWLGNTAYLYISVSFAQMLKAISK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="93067" PGL_stop="97650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93156" e_stop="93237"/>
            <exon e_start="94113" e_stop="94293"/>
            <exon e_start="94394" e_stop="94518"/>
            <exon e_start="94895" e_stop="94941"/>
            <exon e_start="95686" e_stop="95763"/>
            <exon e_start="95851" e_stop="95975"/>
            <exon e_start="96088" e_stop="96154"/>
            <exon e_start="96247" e_stop="96309"/>
            <exon e_start="96662" e_stop="96731"/>
            <exon e_start="96833" e_stop="96933"/>
            <exon e_start="97052" e_stop="97156"/>
            <exon e_start="97236" e_stop="97650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="0.988"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.092" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="93156" e_stop="93237" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94113" e_stop="94293" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94394" e_stop="94518" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94895" e_stop="94941" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95686" e_stop="95763" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.092" acc_prob="0.996">
            <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="95851" e_stop="95975" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96088" e_stop="96154" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.655" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="96247" e_stop="96309" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="96662" e_stop="96731" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.956" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="96833" e_stop="96933" e_length="101"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="97052" e_stop="97156" e_length="105"/>
          </exon>
          <intron i_serial="11" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="97236" e_stop="97650" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93156" stop="93237"/>
              <exon start="94113" stop="94254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93156" stop="93237"/>
              <exon start="94113" stop="94254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93202" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93203" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93209" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93210" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93212" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93212" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93214" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93214" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93215" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93215" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93218" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93222" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93222" stop="93237"/>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
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              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94459" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
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              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94481" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94497" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
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              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94921" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
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              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95712" stop="95763"/>
              <exon start="95851" stop="95975"/>
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              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95712" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281265" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
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              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95863" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95863" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
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              <exon start="96833" stop="96919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95895" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
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              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95906" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
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              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95907" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
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              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95925" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
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              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95932" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
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              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95952" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
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              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
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              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96117" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
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              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96124" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
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              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96265" stop="96309"/>
              <exon start="96662" stop="96731"/>
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              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96694" stop="96731"/>
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              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96717" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96730" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325298" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96843" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288231" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96861" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96864" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96868" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96921" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96927" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96929" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97072" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97075" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281940" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97076" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97112" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97117" stop="97156"/>
              <exon start="97236" stop="97568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97124" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97142" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97288" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97343" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97394" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97395" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97434" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG : CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT : GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG : GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG : ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT : GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG : ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA : GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG : GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG : CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG : GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT : ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</gDNA_template>
            <first_frame> F  F  L  L  F  *  *  Q  F  V  H  W  F  S  L  S  T  K  C  S  Q  H  S  L  G  V  Q   : A  S  G  S  L  E  G  E  R  E  I  L  L  K  M  E  E  V  T  N  V  T  E  Y  Q  E  I  A  K  K  K  L  P  K  M  V  Y  D  Y  Y  A  S  G  A  E  D  Q  W  T  L  A  E  N  R  N  A  F  S  R  I  L :   F  R  P  R  I  L  I  D  V  S  K  I  D  M  T  T  T  V  L  G  F  K  I  S  M  P  I  M  I  A  P  T  A  M  Q  K  M  A  H  P  E   : G  E  Y  A  T  A  R  A  A  S  A  A  G  T  I  M  :  T  L  S  S  W  A  T  S  S  V  E  E  V  A  S  T  G  P  G  I  R  F  F  Q  L  Y  :  V  Y  K  D  R  N  V  V  A  Q  L  V  R  R  A  E  K  A  G  F  K  A  I  A  L  T  V  D  T  P  R  L  G  R  R  E  A  D  I  K  N  R :   F  V  L  P  P  F  L  T  L  K  N  F  E  G  L  D  L  G  K  M  D  Q  :  A  N  D  S  G  L  A  S  Y  V  A  G  Q  I  D  R  T  L  S  W  K  :  D  V  Q  W  L  Q  T  I  T  S  M  P  I  L  V  K  G  V  I  T  A  E  D   : A  R  L  A  V  Q  A  G  A  A  G  I  I  V  S  N  H  G  A  R  Q  L  D  Y  V  P  A  T  I  S  A  L  E  E  :  V  V  K  G  A  Q  G  R  I  P  V  F  L  D  G  G  V  R  R  G  T  D  V  F  K  A  L  A  L  G  A  S  G  I  F  :  I  G  R  P  V  V  F  S  L  A  A  E  G  E  A  G  V  K  K  V  L  Q  M  L  R  D  E  F  E  L  T  M  A  L  S  G  C  R  S  L  K  E  I  T  R  N  H  I  V  T  E  W  D  T  P  H  A  A  L  P  A  P  R  L  *  A  C  T  *  S  F  I  L  F  H  Q  S  N  I  A  S  L  S  K  K  L  I  I  *  F  E  Y  S  F  L  F  N  E  F  T  V  M  L  S  F  S  W  Y  W  K  T  D  I  F  *  *  M  A  S  D  A  S  T  V  H  P  L  F  L  Y  I  I  I  S  W  N  F  A  </first_frame>
            <second_frame>  F  F  Y  Y  F  S  S  N  L  F  T  G  F  H  *  A  Q  S  V  L  N  T  A  W  E  S  K  :  R  Q  E  V  W  K  G  S  V  K  Y  C  *  R  W  R  K  *  P  M  L  R  S  I  R  R  S  P  R  K  S  C  Q  R  W  F  M  T  T  M  P  R  E  L  R  T  S  G  L  W  L  R  T  E  T  P  S  Q  E  F   : C  L  G  P  V  F  S  L  M  *  A  K  L  T  *  P  P  Q  C  *  D  S  R  F  Q  C  L  S  *  L  H  Q  Q  P  C  R  K  W  H  I  L  K  :  G  S  M  L  Q  Q  E  Q  H  Q  Q  Q  A  Q  S  * :   H  C  H  P  G  P  L  P  A  L  R  R  L  L  Q  Q  D  L  A  S  V  S  S  S  F  M :   S  T  R  T  E  M  L  L  L  N  L  *  G  E  L  K  R  Q  V  S  R  L  *  P  S  Q  L  I  P  Q  G  S  D  V  E  K  L  I  L  R  T   : D  S  C  C  H  H  F  *  H  *  R  T  L  K  D  W  T  L  A  R  W  T  K :   L  M  T  L  A  *  L  R  M  L  L  V  K  L  I  A  L  *  A  G  R :   M  F  S  G  S  R  L  S  L  Q  C  Q  S  W  *  R  V  *  L  R  L  R  M  :  L  G  L  Q  F  R  L  E  Q  L  V  S  L  C  Q  T  M  V  L  A  S  S  I  M  S  L  Q  Q  S  R  L  L  K  R :   L  *  K  V  H  K  A  G  S  P  Y  S  W  M  E  V  S  A  V  E  Q  M  S  L  K  L  W  H  L  E  L  Q  A  F  L :   L  E  G  Q  *  F  S  H  W  L  L  K  E  K  L  E  *  K  K  C  C  K  C  C  A  M  S  L  S  *  L  W  H  *  V  A  V  A  H  *  R  R  L  L  E  T  T  L  S  L  N  G  T  P  H  M  L  L  F  Q  P  Q  G  C  E  H  V  L  E  V  S  Y  Y  F  I  K  A  I  L  L  H  C  L  R  S  L  *  F  D  L  N  T  R  F  C  L  M  S  L  R  L  C  *  A  F  H  G  I  G  K  L  I  Y  S  D  K  W  Q  V  M  P  P  L  Y  I  L  Y  F  Y  I  S  S  Y  R  G  T  L  R </second_frame>
            <third_frame>   F  S  T  I  L  V  A  I  C  S  L  V  F  T  K  H  K  V  F  S  T  Q  L  G  S  P  S :   V  R  K  F  G  R  G  A  *  N  T  A  K  D  G  G  S  N  Q  C  Y  G  V  S  G  D  R  Q  E  K  V  A  K  D  G  L  *  L  L  C  L  G  S  *  G  P  V  D  S  G  *  E  Q  K  R  L  L  K  N  S  :  V  *  A  P  Y  S  H  *  C  E  Q  N  *  H  D  H  H  S  A  R  I  Q  D  F  N  A  Y  H  D  C  T  N  S  H  A  E  N  G  T  S  *  R :   G  V  C  Y  S  K  S  S  I  S  S  R  H  N  H   : D  I  V  I  L  G  H  F  Q  R  *  G  G  C  F  N  R  T  W  H  P  F  L  P  A  L   : C  L  Q  G  Q  K  C  C  C  S  T  C  E  E  S  *  K  G  R  F  Q  G  Y  S  P  H  S  *  Y  P  K  A  R  T  *  R  S  *  Y  *  E  Q  :  I  R  V  A  T  I  F  D  I  E  E  L  *  R  I  G  P  W  Q  D  G  P   : S  *  *  L  W  L  S  F  V  C  C  W  S  N  *  S  H  F  E  L  E   : G  C  S  V  A  P  D  Y  H  F  N  A  N  P  G  E  G  C  N  Y  G  *  G  C :   *  A  C  S  S  G  W  S  S  W  Y  H  C  V  K  P  W  C  S  P  A  R  L  C  P  C  N  N  L  G  S  *  R   : G  C  E  R  C  T  R  Q  D  P  R  I  L  G  W  R  C  P  P  W  N  R  C  L  *  S  F  G  T  W  S  F  R  H  F   : Y  W  K  A  S  S  F  L  I  G  C  *  R  R  S  W  S  E  K  S  A  A  N  V  A  R  *  V  *  A  N  Y  G  I  E  W  L  S  L  T  E  G  D  Y  *  K  P  H  C  H  *  M  G  H  P  T  C  C  S  S  S  P  K  V  V  S  M  Y  L  K  F  H  I  I  S  S  K  Q  Y  C  F  T  V  *  E  A  Y  N  L  I  *  I  L  V  S  V  *  *  V  Y  G  Y  V  K  L  F  M  V  L  E  N  *  Y  I  L  I  N  G  K  *  C  L  H  C  T  S  S  I  S  I  Y  H  H  I  V  E  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93177" stop="93237"/>
                    <exon start="94113" stop="94293"/>
                    <exon start="94394" stop="94518"/>
                    <exon start="94895" stop="94941"/>
                    <exon start="95686" stop="95763"/>
                    <exon start="95851" stop="95975"/>
                    <exon start="96088" stop="96154"/>
                    <exon start="96247" stop="96309"/>
                    <exon start="96662" stop="96731"/>
                    <exon start="96833" stop="96933"/>
                    <exon start="97052" stop="97156"/>
                    <exon start="97236" stop="97430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1215</number_coding_nucleotides>
                  <number_encoded_amino_acids>405</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFVHWFSLSTKCSQHSLGVQASGSLEGEREILLKMEEVTNVTEYQEIAKKKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLDLGKMDQANDSGLASYVAGQIDRTLSWKDVQWLQTITSMPILVKGVITAEDARLAVQAGAAGIIVSNHGARQLDYVPATISALEEVVKGAQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVKKVLQMLRDEFELTMALSGCRSLKEITRNHIVTEWDTPHAALPAPRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93082" e_stop="93237"/>
            <exon e_start="94119" e_stop="94293"/>
            <exon e_start="94394" e_stop="94518"/>
            <exon e_start="94895" e_stop="94941"/>
            <exon e_start="95686" e_stop="95763"/>
            <exon e_start="95851" e_stop="95975"/>
            <exon e_start="96088" e_stop="96154"/>
            <exon e_start="96247" e_stop="96309"/>
            <exon e_start="96662" e_stop="96731"/>
            <exon e_start="96833" e_stop="96933"/>
            <exon e_start="97052" e_stop="97156"/>
            <exon e_start="97236" e_stop="97650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.740" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.092" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93082" e_stop="93237" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.740">
            <gDNA_intron_boundary i_start="93238" i_stop="94118" i_length="881"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94119" e_stop="94293" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94394" e_stop="94518" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94895" e_stop="94941" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95686" e_stop="95763" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.092" acc_prob="0.996">
            <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="95851" e_stop="95975" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96088" e_stop="96154" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.655" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="96247" e_stop="96309" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="96662" e_stop="96731" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.956" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="96833" e_stop="96933" e_length="101"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="97052" e_stop="97156" e_length="105"/>
          </exon>
          <intron i_serial="11" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="97236" e_stop="97650" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93082" stop="93237"/>
              <exon start="94119" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93169" stop="93237"/>
              <exon start="94119" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93172" stop="93237"/>
              <exon start="94119" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93192" stop="93237"/>
              <exon start="94119" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93198" stop="93237"/>
              <exon start="94119" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279346" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93199" stop="93237"/>
              <exon start="94119" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93203" stop="93237"/>
              <exon start="94119" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93207" stop="93237"/>
              <exon start="94119" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93210" stop="93237"/>
              <exon start="94119" stop="94293"/>
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              <exon start="94497" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94921" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
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              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95712" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95712" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281265" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95863" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95863" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95895" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
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              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95906" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95907" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95925" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95932" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95952" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96117" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96124" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96265" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96694" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96717" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96730" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325298" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96843" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288231" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96861" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96864" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96868" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96921" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96927" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96929" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97072" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97075" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281940" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97076" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97112" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97117" stop="97156"/>
              <exon start="97236" stop="97568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97124" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97142" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97288" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97343" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97394" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97395" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97434" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTTTGTCTTTTTATTAATTCCTATTTAATTAATTTCTTGCCCCATTTTTGTCATTATTATTATTGTTTTCTTTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG : GAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT : GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG : GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG : ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT : GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG : ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA : GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG : GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG : CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG : GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT : ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</gDNA_template>
            <first_frame> *  F  L  S  F  Y  *  F  L  F  N  *  F  L  A  P  F  L  S  L  L  L  L  F  S  F  F  Y  Y  F  S  S  N  L  F  T  G  F  H  *  A  Q  S  V  L  N  T  A  W  E  S  K  :  E  V  W  K  G  S  V  K  Y  C  *  R  W  R  K  *  P  M  L  R  S  I  R  R  S  P  R  K  S  C  Q  R  W  F  M  T  T  M  P  R  E  L  R  T  S  G  L  W  L  R  T  E  T  P  S  Q  E  F   : C  L  G  P  V  F  S  L  M  *  A  K  L  T  *  P  P  Q  C  *  D  S  R  F  Q  C  L  S  *  L  H  Q  Q  P  C  R  K  W  H  I  L  K  :  G  S  M  L  Q  Q  E  Q  H  Q  Q  Q  A  Q  S  * :   H  C  H  P  G  P  L  P  A  L  R  R  L  L  Q  Q  D  L  A  S  V  S  S  S  F  M :   S  T  R  T  E  M  L  L  L  N  L  *  G  E  L  K  R  Q  V  S  R  L  *  P  S  Q  L  I  P  Q  G  S  D  V  E  K  L  I  L  R  T   : D  S  C  C  H  H  F  *  H  *  R  T  L  K  D  W  T  L  A  R  W  T  K :   L  M  T  L  A  *  L  R  M  L  L  V  K  L  I  A  L  *  A  G  R :   M  F  S  G  S  R  L  S  L  Q  C  Q  S  W  *  R  V  *  L  R  L  R  M  :  L  G  L  Q  F  R  L  E  Q  L  V  S  L  C  Q  T  M  V  L  A  S  S  I  M  S  L  Q  Q  S  R  L  L  K  R :   L  *  K  V  H  K  A  G  S  P  Y  S  W  M  E  V  S  A  V  E  Q  M  S  L  K  L  W  H  L  E  L  Q  A  F  L :   L  E  G  Q  *  F  S  H  W  L  L  K  E  K  L  E  *  K  K  C  C  K  C  C  A  M  S  L  S  *  L  W  H  *  V  A  V  A  H  *  R  R  L  L  E  T  T  L  S  L  N  G  T  P  H  M  L  L  F  Q  P  Q  G  C  E  H  V  L  E  V  S  Y  Y  F  I  K  A  I  L  L  H  C  L  R  S  L  *  F  D  L  N  T  R  F  C  L  M  S  L  R  L  C  *  A  F  H  G  I  G  K  L  I  Y  S  D  K  W  Q  V  M  P  P  L  Y  I  L  Y  F  Y  I  S  S  Y  R  G  T  L  R </first_frame>
            <second_frame>  N  F  C  L  F  I  N  S  Y  L  I  N  F  L  P  H  F  C  H  Y  Y  Y  C  F  L  F  S  T  I  L  V  A  I  C  S  L  V  F  T  K  H  K  V  F  S  T  Q  L  G  S  P  R :   K  F  G  R  G  A  *  N  T  A  K  D  G  G  S  N  Q  C  Y  G  V  S  G  D  R  Q  E  K  V  A  K  D  G  L  *  L  L  C  L  G  S  *  G  P  V  D  S  G  *  E  Q  K  R  L  L  K  N  S  :  V  *  A  P  Y  S  H  *  C  E  Q  N  *  H  D  H  H  S  A  R  I  Q  D  F  N  A  Y  H  D  C  T  N  S  H  A  E  N  G  T  S  *  R :   G  V  C  Y  S  K  S  S  I  S  S  R  H  N  H   : D  I  V  I  L  G  H  F  Q  R  *  G  G  C  F  N  R  T  W  H  P  F  L  P  A  L   : C  L  Q  G  Q  K  C  C  C  S  T  C  E  E  S  *  K  G  R  F  Q  G  Y  S  P  H  S  *  Y  P  K  A  R  T  *  R  S  *  Y  *  E  Q  :  I  R  V  A  T  I  F  D  I  E  E  L  *  R  I  G  P  W  Q  D  G  P   : S  *  *  L  W  L  S  F  V  C  C  W  S  N  *  S  H  F  E  L  E   : G  C  S  V  A  P  D  Y  H  F  N  A  N  P  G  E  G  C  N  Y  G  *  G  C :   *  A  C  S  S  G  W  S  S  W  Y  H  C  V  K  P  W  C  S  P  A  R  L  C  P  C  N  N  L  G  S  *  R   : G  C  E  R  C  T  R  Q  D  P  R  I  L  G  W  R  C  P  P  W  N  R  C  L  *  S  F  G  T  W  S  F  R  H  F   : Y  W  K  A  S  S  F  L  I  G  C  *  R  R  S  W  S  E  K  S  A  A  N  V  A  R  *  V  *  A  N  Y  G  I  E  W  L  S  L  T  E  G  D  Y  *  K  P  H  C  H  *  M  G  H  P  T  C  C  S  S  S  P  K  V  V  S  M  Y  L  K  F  H  I  I  S  S  K  Q  Y  C  F  T  V  *  E  A  Y  N  L  I  *  I  L  V  S  V  *  *  V  Y  G  Y  V  K  L  F  M  V  L  E  N  *  Y  I  L  I  N  G  K  *  C  L  H  C  T  S  S  I  S  I  Y  H  H  I  V  E  L  C   </second_frame>
            <third_frame>   I  F  V  F  L  L  I  P  I  *  L  I  S  C  P  I  F  V  I  I  I  I  V  F  F  F  L  L  F  *  *  Q  F  V  H  W  F  S  L  S  T  K  C  S  Q  H  S  L  G  V  Q   : G  S  L  E  G  E  R  E  I  L  L  K  M  E  E  V  T  N  V  T  E  Y  Q  E  I  A  K  K  K  L  P  K  M  V  Y  D  Y  Y  A  S  G  A  E  D  Q  W  T  L  A  E  N  R  N  A  F  S  R  I  L :   F  R  P  R  I  L  I  D  V  S  K  I  D  M  T  T  T  V  L  G  F  K  I  S  M  P  I  M  I  A  P  T  A  M  Q  K  M  A  H  P  E   : G  E  Y  A  T  A  R  A  A  S  A  A  G  T  I  M  :  T  L  S  S  W  A  T  S  S  V  E  E  V  A  S  T  G  P  G  I  R  F  F  Q  L  Y  :  V  Y  K  D  R  N  V  V  A  Q  L  V  R  R  A  E  K  A  G  F  K  A  I  A  L  T  V  D  T  P  R  L  G  R  R  E  A  D  I  K  N  R :   F  V  L  P  P  F  L  T  L  K  N  F  E  G  L  D  L  G  K  M  D  Q  :  A  N  D  S  G  L  A  S  Y  V  A  G  Q  I  D  R  T  L  S  W  K  :  D  V  Q  W  L  Q  T  I  T  S  M  P  I  L  V  K  G  V  I  T  A  E  D   : A  R  L  A  V  Q  A  G  A  A  G  I  I  V  S  N  H  G  A  R  Q  L  D  Y  V  P  A  T  I  S  A  L  E  E  :  V  V  K  G  A  Q  G  R  I  P  V  F  L  D  G  G  V  R  R  G  T  D  V  F  K  A  L  A  L  G  A  S  G  I  F  :  I  G  R  P  V  V  F  S  L  A  A  E  G  E  A  G  V  K  K  V  L  Q  M  L  R  D  E  F  E  L  T  M  A  L  S  G  C  R  S  L  K  E  I  T  R  N  H  I  V  T  E  W  D  T  P  H  A  A  L  P  A  P  R  L  *  A  C  T  *  S  F  I  L  F  H  Q  S  N  I  A  S  L  S  K  K  L  I  I  *  F  E  Y  S  F  L  F  N  E  F  T  V  M  L  S  F  S  W  Y  W  K  T  D  I  F  *  *  M  A  S  D  A  S  T  V  H  P  L  F  L  Y  I  I  I  S  W  N  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93177" stop="93237"/>
                    <exon start="94119" stop="94293"/>
                    <exon start="94394" stop="94518"/>
                    <exon start="94895" stop="94941"/>
                    <exon start="95686" stop="95763"/>
                    <exon start="95851" stop="95975"/>
                    <exon start="96088" stop="96154"/>
                    <exon start="96247" stop="96309"/>
                    <exon start="96662" stop="96731"/>
                    <exon start="96833" stop="96933"/>
                    <exon start="97052" stop="97156"/>
                    <exon start="97236" stop="97430"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFVHWFSLSTKCSQHSLGVQGSLEGEREILLKMEEVTNVTEYQEIAKKKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLDLGKMDQANDSGLASYVAGQIDRTLSWKDVQWLQTITSMPILVKGVITAEDARLAVQAGAAGIIVSNHGARQLDYVPATISALEEVVKGAQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVKKVLQMLRDEFELTMALSGCRSLKEITRNHIVTEWDTPHAALPAPRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="94051" e_stop="94293"/>
            <exon e_start="94394" e_stop="94518"/>
            <exon e_start="94895" e_stop="94941"/>
            <exon e_start="95686" e_stop="95763"/>
            <exon e_start="95851" e_stop="95975"/>
            <exon e_start="96088" e_stop="96154"/>
            <exon e_start="96247" e_stop="96309"/>
            <exon e_start="96662" e_stop="96731"/>
            <exon e_start="96833" e_stop="96933"/>
            <exon e_start="97052" e_stop="97156"/>
            <exon e_start="97236" e_stop="97650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.963"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.092" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="94051" e_stop="94293" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94394" e_stop="94518" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94895" e_stop="94941" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95686" e_stop="95763" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.092" acc_prob="0.996">
            <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95851" e_stop="95975" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="96088" e_stop="96154" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.655" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96247" e_stop="96309" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="96662" e_stop="96731" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.956" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="96833" e_stop="96933" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="97052" e_stop="97156" e_length="105"/>
          </exon>
          <intron i_serial="10" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="97236" e_stop="97650" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94051" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94105" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94116" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
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              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95712" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95712" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281265" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95863" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95863" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95895" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95906" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95907" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95925" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95932" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95952" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96117" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96124" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96265" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96694" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96717" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96730" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325298" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96843" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288231" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96861" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96864" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96868" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96921" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96927" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96929" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97072" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97075" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281940" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97076" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97112" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97117" stop="97156"/>
              <exon start="97236" stop="97568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97124" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97142" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97288" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97343" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97394" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97395" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97434" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGATTCAACAGTAATATGTATCTTCAATAAGGCTTGTCAACAGTGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT : GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG : GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG : ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT : GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG : ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA : GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG : GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG : CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG : GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT : ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</gDNA_template>
            <first_frame> I  *  F  N  S  N  M  Y  L  Q  *  G  L  S  T  V  L  I  L  C  S  V  R  K  F  G  R  G  A  *  N  T  A  K  D  G  G  S  N  Q  C  Y  G  V  S  G  D  R  Q  E  K  V  A  K  D  G  L  *  L  L  C  L  G  S  *  G  P  V  D  S  G  *  E  Q  K  R  L  L  K  N  S  :  V  *  A  P  Y  S  H  *  C  E  Q  N  *  H  D  H  H  S  A  R  I  Q  D  F  N  A  Y  H  D  C  T  N  S  H  A  E  N  G  T  S  *  R :   G  V  C  Y  S  K  S  S  I  S  S  R  H  N  H   : D  I  V  I  L  G  H  F  Q  R  *  G  G  C  F  N  R  T  W  H  P  F  L  P  A  L   : C  L  Q  G  Q  K  C  C  C  S  T  C  E  E  S  *  K  G  R  F  Q  G  Y  S  P  H  S  *  Y  P  K  A  R  T  *  R  S  *  Y  *  E  Q  :  I  R  V  A  T  I  F  D  I  E  E  L  *  R  I  G  P  W  Q  D  G  P   : S  *  *  L  W  L  S  F  V  C  C  W  S  N  *  S  H  F  E  L  E   : G  C  S  V  A  P  D  Y  H  F  N  A  N  P  G  E  G  C  N  Y  G  *  G  C :   *  A  C  S  S  G  W  S  S  W  Y  H  C  V  K  P  W  C  S  P  A  R  L  C  P  C  N  N  L  G  S  *  R   : G  C  E  R  C  T  R  Q  D  P  R  I  L  G  W  R  C  P  P  W  N  R  C  L  *  S  F  G  T  W  S  F  R  H  F   : Y  W  K  A  S  S  F  L  I  G  C  *  R  R  S  W  S  E  K  S  A  A  N  V  A  R  *  V  *  A  N  Y  G  I  E  W  L  S  L  T  E  G  D  Y  *  K  P  H  C  H  *  M  G  H  P  T  C  C  S  S  S  P  K  V  V  S  M  Y  L  K  F  H  I  I  S  S  K  Q  Y  C  F  T  V  *  E  A  Y  N  L  I  *  I  L  V  S  V  *  *  V  Y  G  Y  V  K  L  F  M  V  L  E  N  *  Y  I  L  I  N  G  K  *  C  L  H  C  T  S  S  I  S  I  Y  H  H  I  V  E  L  C   </first_frame>
            <second_frame>  Y  D  S  T  V  I  C  I  F  N  K  A  C  Q  Q  C  *  F  C  V  A  S  G  S  L  E  G  E  R  E  I  L  L  K  M  E  E  V  T  N  V  T  E  Y  Q  E  I  A  K  K  K  L  P  K  M  V  Y  D  Y  Y  A  S  G  A  E  D  Q  W  T  L  A  E  N  R  N  A  F  S  R  I  L :   F  R  P  R  I  L  I  D  V  S  K  I  D  M  T  T  T  V  L  G  F  K  I  S  M  P  I  M  I  A  P  T  A  M  Q  K  M  A  H  P  E   : G  E  Y  A  T  A  R  A  A  S  A  A  G  T  I  M  :  T  L  S  S  W  A  T  S  S  V  E  E  V  A  S  T  G  P  G  I  R  F  F  Q  L  Y  :  V  Y  K  D  R  N  V  V  A  Q  L  V  R  R  A  E  K  A  G  F  K  A  I  A  L  T  V  D  T  P  R  L  G  R  R  E  A  D  I  K  N  R :   F  V  L  P  P  F  L  T  L  K  N  F  E  G  L  D  L  G  K  M  D  Q  :  A  N  D  S  G  L  A  S  Y  V  A  G  Q  I  D  R  T  L  S  W  K  :  D  V  Q  W  L  Q  T  I  T  S  M  P  I  L  V  K  G  V  I  T  A  E  D   : A  R  L  A  V  Q  A  G  A  A  G  I  I  V  S  N  H  G  A  R  Q  L  D  Y  V  P  A  T  I  S  A  L  E  E  :  V  V  K  G  A  Q  G  R  I  P  V  F  L  D  G  G  V  R  R  G  T  D  V  F  K  A  L  A  L  G  A  S  G  I  F  :  I  G  R  P  V  V  F  S  L  A  A  E  G  E  A  G  V  K  K  V  L  Q  M  L  R  D  E  F  E  L  T  M  A  L  S  G  C  R  S  L  K  E  I  T  R  N  H  I  V  T  E  W  D  T  P  H  A  A  L  P  A  P  R  L  *  A  C  T  *  S  F  I  L  F  H  Q  S  N  I  A  S  L  S  K  K  L  I  I  *  F  E  Y  S  F  L  F  N  E  F  T  V  M  L  S  F  S  W  Y  W  K  T  D  I  F  *  *  M  A  S  D  A  S  T  V  H  P  L  F  L  Y  I  I  I  S  W  N  F  A  </second_frame>
            <third_frame>   M  I  Q  Q  *  Y  V  S  S  I  R  L  V  N  S  A  N  F  V  *  R  Q  E  V  W  K  G  S  V  K  Y  C  *  R  W  R  K  *  P  M  L  R  S  I  R  R  S  P  R  K  S  C  Q  R  W  F  M  T  T  M  P  R  E  L  R  T  S  G  L  W  L  R  T  E  T  P  S  Q  E  F   : C  L  G  P  V  F  S  L  M  *  A  K  L  T  *  P  P  Q  C  *  D  S  R  F  Q  C  L  S  *  L  H  Q  Q  P  C  R  K  W  H  I  L  K  :  G  S  M  L  Q  Q  E  Q  H  Q  Q  Q  A  Q  S  * :   H  C  H  P  G  P  L  P  A  L  R  R  L  L  Q  Q  D  L  A  S  V  S  S  S  F  M :   S  T  R  T  E  M  L  L  L  N  L  *  G  E  L  K  R  Q  V  S  R  L  *  P  S  Q  L  I  P  Q  G  S  D  V  E  K  L  I  L  R  T   : D  S  C  C  H  H  F  *  H  *  R  T  L  K  D  W  T  L  A  R  W  T  K :   L  M  T  L  A  *  L  R  M  L  L  V  K  L  I  A  L  *  A  G  R :   M  F  S  G  S  R  L  S  L  Q  C  Q  S  W  *  R  V  *  L  R  L  R  M  :  L  G  L  Q  F  R  L  E  Q  L  V  S  L  C  Q  T  M  V  L  A  S  S  I  M  S  L  Q  Q  S  R  L  L  K  R :   L  *  K  V  H  K  A  G  S  P  Y  S  W  M  E  V  S  A  V  E  Q  M  S  L  K  L  W  H  L  E  L  Q  A  F  L :   L  E  G  Q  *  F  S  H  W  L  L  K  E  K  L  E  *  K  K  C  C  K  C  C  A  M  S  L  S  *  L  W  H  *  V  A  V  A  H  *  R  R  L  L  E  T  T  L  S  L  N  G  T  P  H  M  L  L  F  Q  P  Q  G  C  E  H  V  L  E  V  S  Y  Y  F  I  K  A  I  L  L  H  C  L  R  S  L  *  F  D  L  N  T  R  F  C  L  M  S  L  R  L  C  *  A  F  H  G  I  G  K  L  I  Y  S  D  K  W  Q  V  M  P  P  L  Y  I  L  Y  F  Y  I  S  S  Y  R  G  T  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94103" stop="94293"/>
                    <exon start="94394" stop="94518"/>
                    <exon start="94895" stop="94941"/>
                    <exon start="95686" stop="95763"/>
                    <exon start="95851" stop="95975"/>
                    <exon start="96088" stop="96154"/>
                    <exon start="96247" stop="96309"/>
                    <exon start="96662" stop="96731"/>
                    <exon start="96833" stop="96933"/>
                    <exon start="97052" stop="97156"/>
                    <exon start="97236" stop="97430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCVASGSLEGEREILLKMEEVTNVTEYQEIAKKKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLDLGKMDQANDSGLASYVAGQIDRTLSWKDVQWLQTITSMPILVKGVITAEDARLAVQAGAAGIIVSNHGARQLDYVPATISALEEVVKGAQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVKKVLQMLRDEFELTMALSGCRSLKEITRNHIVTEWDTPHAALPAPRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="93180" e_stop="93237"/>
            <exon e_start="94097" e_stop="94293"/>
            <exon e_start="94394" e_stop="94518"/>
            <exon e_start="94895" e_stop="94941"/>
            <exon e_start="95686" e_stop="95763"/>
            <exon e_start="95851" e_stop="95975"/>
            <exon e_start="96088" e_stop="96154"/>
            <exon e_start="96247" e_stop="96309"/>
            <exon e_start="96662" e_stop="96731"/>
            <exon e_start="96833" e_stop="96933"/>
            <exon e_start="97052" e_stop="97156"/>
            <exon e_start="97236" e_stop="97650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.626" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.092" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93180" e_stop="93237" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.626">
            <gDNA_intron_boundary i_start="93238" i_stop="94096" i_length="859"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94097" e_stop="94293" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94394" e_stop="94518" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94895" e_stop="94941" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95686" e_stop="95763" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.092" acc_prob="0.996">
            <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="95851" e_stop="95975" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96088" e_stop="96154" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.655" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="96247" e_stop="96309" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="96662" e_stop="96731" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.956" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="96833" e_stop="96933" e_length="101"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="97052" e_stop="97156" e_length="105"/>
          </exon>
          <intron i_serial="11" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="97236" e_stop="97650" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93180" stop="93237"/>
              <exon start="94097" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94105" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94116" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
            </gDNA_exon_coordinates>
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              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95712" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95712" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281265" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95863" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95863" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95895" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95906" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95907" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95925" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95932" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95952" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96117" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96124" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96265" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96694" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96717" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96730" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325298" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96843" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288231" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96861" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96864" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96868" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96921" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96927" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96929" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97072" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97075" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281940" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97076" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97112" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97117" stop="97156"/>
              <exon start="97236" stop="97568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97124" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97142" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97288" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97343" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97394" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97395" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97434" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG : TGCTAATTTTGTGTAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT : GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG : GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG : ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT : GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG : ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA : GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG : GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG : CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG : GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT : ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</gDNA_template>
            <first_frame> F  V  H  W  F  S  L  S  T  K  C  S  Q  H  S  L  G  V  Q   : V  L  I  L  C  S  V  R  K  F  G  R  G  A  *  N  T  A  K  D  G  G  S  N  Q  C  Y  G  V  S  G  D  R  Q  E  K  V  A  K  D  G  L  *  L  L  C  L  G  S  *  G  P  V  D  S  G  *  E  Q  K  R  L  L  K  N  S  :  V  *  A  P  Y  S  H  *  C  E  Q  N  *  H  D  H  H  S  A  R  I  Q  D  F  N  A  Y  H  D  C  T  N  S  H  A  E  N  G  T  S  *  R :   G  V  C  Y  S  K  S  S  I  S  S  R  H  N  H   : D  I  V  I  L  G  H  F  Q  R  *  G  G  C  F  N  R  T  W  H  P  F  L  P  A  L   : C  L  Q  G  Q  K  C  C  C  S  T  C  E  E  S  *  K  G  R  F  Q  G  Y  S  P  H  S  *  Y  P  K  A  R  T  *  R  S  *  Y  *  E  Q  :  I  R  V  A  T  I  F  D  I  E  E  L  *  R  I  G  P  W  Q  D  G  P   : S  *  *  L  W  L  S  F  V  C  C  W  S  N  *  S  H  F  E  L  E   : G  C  S  V  A  P  D  Y  H  F  N  A  N  P  G  E  G  C  N  Y  G  *  G  C :   *  A  C  S  S  G  W  S  S  W  Y  H  C  V  K  P  W  C  S  P  A  R  L  C  P  C  N  N  L  G  S  *  R   : G  C  E  R  C  T  R  Q  D  P  R  I  L  G  W  R  C  P  P  W  N  R  C  L  *  S  F  G  T  W  S  F  R  H  F   : Y  W  K  A  S  S  F  L  I  G  C  *  R  R  S  W  S  E  K  S  A  A  N  V  A  R  *  V  *  A  N  Y  G  I  E  W  L  S  L  T  E  G  D  Y  *  K  P  H  C  H  *  M  G  H  P  T  C  C  S  S  S  P  K  V  V  S  M  Y  L  K  F  H  I  I  S  S  K  Q  Y  C  F  T  V  *  E  A  Y  N  L  I  *  I  L  V  S  V  *  *  V  Y  G  Y  V  K  L  F  M  V  L  E  N  *  Y  I  L  I  N  G  K  *  C  L  H  C  T  S  S  I  S  I  Y  H  H  I  V  E  L  C   </first_frame>
            <second_frame>  L  F  T  G  F  H  *  A  Q  S  V  L  N  T  A  W  E  S  K  :  C  *  F  C  V  A  S  G  S  L  E  G  E  R  E  I  L  L  K  M  E  E  V  T  N  V  T  E  Y  Q  E  I  A  K  K  K  L  P  K  M  V  Y  D  Y  Y  A  S  G  A  E  D  Q  W  T  L  A  E  N  R  N  A  F  S  R  I  L :   F  R  P  R  I  L  I  D  V  S  K  I  D  M  T  T  T  V  L  G  F  K  I  S  M  P  I  M  I  A  P  T  A  M  Q  K  M  A  H  P  E   : G  E  Y  A  T  A  R  A  A  S  A  A  G  T  I  M  :  T  L  S  S  W  A  T  S  S  V  E  E  V  A  S  T  G  P  G  I  R  F  F  Q  L  Y  :  V  Y  K  D  R  N  V  V  A  Q  L  V  R  R  A  E  K  A  G  F  K  A  I  A  L  T  V  D  T  P  R  L  G  R  R  E  A  D  I  K  N  R :   F  V  L  P  P  F  L  T  L  K  N  F  E  G  L  D  L  G  K  M  D  Q  :  A  N  D  S  G  L  A  S  Y  V  A  G  Q  I  D  R  T  L  S  W  K  :  D  V  Q  W  L  Q  T  I  T  S  M  P  I  L  V  K  G  V  I  T  A  E  D   : A  R  L  A  V  Q  A  G  A  A  G  I  I  V  S  N  H  G  A  R  Q  L  D  Y  V  P  A  T  I  S  A  L  E  E  :  V  V  K  G  A  Q  G  R  I  P  V  F  L  D  G  G  V  R  R  G  T  D  V  F  K  A  L  A  L  G  A  S  G  I  F  :  I  G  R  P  V  V  F  S  L  A  A  E  G  E  A  G  V  K  K  V  L  Q  M  L  R  D  E  F  E  L  T  M  A  L  S  G  C  R  S  L  K  E  I  T  R  N  H  I  V  T  E  W  D  T  P  H  A  A  L  P  A  P  R  L  *  A  C  T  *  S  F  I  L  F  H  Q  S  N  I  A  S  L  S  K  K  L  I  I  *  F  E  Y  S  F  L  F  N  E  F  T  V  M  L  S  F  S  W  Y  W  K  T  D  I  F  *  *  M  A  S  D  A  S  T  V  H  P  L  F  L  Y  I  I  I  S  W  N  F  A  </second_frame>
            <third_frame>   C  S  L  V  F  T  K  H  K  V  F  S  T  Q  L  G  S  P  S :   A  N  F  V  *  R  Q  E  V  W  K  G  S  V  K  Y  C  *  R  W  R  K  *  P  M  L  R  S  I  R  R  S  P  R  K  S  C  Q  R  W  F  M  T  T  M  P  R  E  L  R  T  S  G  L  W  L  R  T  E  T  P  S  Q  E  F   : C  L  G  P  V  F  S  L  M  *  A  K  L  T  *  P  P  Q  C  *  D  S  R  F  Q  C  L  S  *  L  H  Q  Q  P  C  R  K  W  H  I  L  K  :  G  S  M  L  Q  Q  E  Q  H  Q  Q  Q  A  Q  S  * :   H  C  H  P  G  P  L  P  A  L  R  R  L  L  Q  Q  D  L  A  S  V  S  S  S  F  M :   S  T  R  T  E  M  L  L  L  N  L  *  G  E  L  K  R  Q  V  S  R  L  *  P  S  Q  L  I  P  Q  G  S  D  V  E  K  L  I  L  R  T   : D  S  C  C  H  H  F  *  H  *  R  T  L  K  D  W  T  L  A  R  W  T  K :   L  M  T  L  A  *  L  R  M  L  L  V  K  L  I  A  L  *  A  G  R :   M  F  S  G  S  R  L  S  L  Q  C  Q  S  W  *  R  V  *  L  R  L  R  M  :  L  G  L  Q  F  R  L  E  Q  L  V  S  L  C  Q  T  M  V  L  A  S  S  I  M  S  L  Q  Q  S  R  L  L  K  R :   L  *  K  V  H  K  A  G  S  P  Y  S  W  M  E  V  S  A  V  E  Q  M  S  L  K  L  W  H  L  E  L  Q  A  F  L :   L  E  G  Q  *  F  S  H  W  L  L  K  E  K  L  E  *  K  K  C  C  K  C  C  A  M  S  L  S  *  L  W  H  *  V  A  V  A  H  *  R  R  L  L  E  T  T  L  S  L  N  G  T  P  H  M  L  L  F  Q  P  Q  G  C  E  H  V  L  E  V  S  Y  Y  F  I  K  A  I  L  L  H  C  L  R  S  L  *  F  D  L  N  T  R  F  C  L  M  S  L  R  L  C  *  A  F  H  G  I  G  K  L  I  Y  S  D  K  W  Q  V  M  P  P  L  Y  I  L  Y  F  Y  I  S  S  Y  R  G  T  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94103" stop="94293"/>
                    <exon start="94394" stop="94518"/>
                    <exon start="94895" stop="94941"/>
                    <exon start="95686" stop="95763"/>
                    <exon start="95851" stop="95975"/>
                    <exon start="96088" stop="96154"/>
                    <exon start="96247" stop="96309"/>
                    <exon start="96662" stop="96731"/>
                    <exon start="96833" stop="96933"/>
                    <exon start="97052" stop="97156"/>
                    <exon start="97236" stop="97430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCVASGSLEGEREILLKMEEVTNVTEYQEIAKKKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLDLGKMDQANDSGLASYVAGQIDRTLSWKDVQWLQTITSMPILVKGVITAEDARLAVQAGAAGIIVSNHGARQLDYVPATISALEEVVKGAQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVKKVLQMLRDEFELTMALSGCRSLKEITRNHIVTEWDTPHAALPAPRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="93067" e_stop="93237"/>
            <exon e_start="94123" e_stop="94293"/>
            <exon e_start="94394" e_stop="94518"/>
            <exon e_start="94895" e_stop="94941"/>
            <exon e_start="95686" e_stop="95763"/>
            <exon e_start="95851" e_stop="95975"/>
            <exon e_start="96088" e_stop="96154"/>
            <exon e_start="96247" e_stop="96309"/>
            <exon e_start="96662" e_stop="96731"/>
            <exon e_start="96833" e_stop="96933"/>
            <exon e_start="97052" e_stop="97156"/>
            <exon e_start="97236" e_stop="97650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.092" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93067" e_stop="93237" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93238" i_stop="94122" i_length="885"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94123" e_stop="94293" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94294" i_stop="94393" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94394" e_stop="94518" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94519" i_stop="94894" i_length="376"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94895" e_stop="94941" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="94942" i_stop="95685" i_length="744"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95686" e_stop="95763" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.092" acc_prob="0.996">
            <gDNA_intron_boundary i_start="95764" i_stop="95850" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="95851" e_stop="95975" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="95976" i_stop="96087" i_length="112"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96088" e_stop="96154" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.655" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="96247" e_stop="96309" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="96662" e_stop="96731" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.956" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="96833" e_stop="96933" e_length="101"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="97052" e_stop="97156" e_length="105"/>
          </exon>
          <intron i_serial="11" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="97236" e_stop="97650" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93067" stop="93237"/>
              <exon start="94123" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93165" stop="93237"/>
              <exon start="94123" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93177" stop="93237"/>
              <exon start="94123" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93205" stop="93237"/>
              <exon start="94123" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93205" stop="93237"/>
              <exon start="94123" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279353" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93220" stop="93237"/>
              <exon start="94123" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93222" stop="93237"/>
              <exon start="94123" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93222" stop="93237"/>
              <exon start="94123" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94123" stop="94293"/>
              <exon start="94394" stop="94518"/>
              <exon start="94895" stop="94941"/>
              <exon start="95686" stop="95763"/>
              <exon start="95851" stop="95975"/>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96261"/>
            </gDNA_exon_coordinates>
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              <exon start="96265" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96694" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96717" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96730" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325298" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96843" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288231" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96861" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96864" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96868" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96921" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96927" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96929" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97072" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97075" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281940" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97076" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97112" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97117" stop="97156"/>
              <exon start="97236" stop="97568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97124" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97142" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97288" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97343" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97394" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97395" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97434" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATCCACCCCATATAATTTTTGTCTTTTTATTAATTCCTATTTAATTAATTTCTTGCCCCATTTTTGTCATTATTATTATTGTTTTCTTTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAG : TTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATGGTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCT : GTTTAGGCCCCGTATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATGCAGAAAATGGCACATCCTGAAG : GGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATG : ACATTGTCATCCTGGGCCACTTCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTAT : GTCTACAAGGACAGAAATGTTGTTGCTCAACTTGTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAACAG : ATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA : GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG : GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG : CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG : GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT : ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</gDNA_template>
            <first_frame> F  I  H  P  I  *  F  L  S  F  Y  *  F  L  F  N  *  F  L  A  P  F  L  S  L  L  L  L  F  S  F  F  Y  Y  F  S  S  N  L  F  T  G  F  H  *  A  Q  S  V  L  N  T  A  W  E  S  K  :  F  G  R  G  A  *  N  T  A  K  D  G  G  S  N  Q  C  Y  G  V  S  G  D  R  Q  E  K  V  A  K  D  G  L  *  L  L  C  L  G  S  *  G  P  V  D  S  G  *  E  Q  K  R  L  L  K  N  S  :  V  *  A  P  Y  S  H  *  C  E  Q  N  *  H  D  H  H  S  A  R  I  Q  D  F  N  A  Y  H  D  C  T  N  S  H  A  E  N  G  T  S  *  R :   G  V  C  Y  S  K  S  S  I  S  S  R  H  N  H   : D  I  V  I  L  G  H  F  Q  R  *  G  G  C  F  N  R  T  W  H  P  F  L  P  A  L   : C  L  Q  G  Q  K  C  C  C  S  T  C  E  E  S  *  K  G  R  F  Q  G  Y  S  P  H  S  *  Y  P  K  A  R  T  *  R  S  *  Y  *  E  Q  :  I  R  V  A  T  I  F  D  I  E  E  L  *  R  I  G  P  W  Q  D  G  P   : S  *  *  L  W  L  S  F  V  C  C  W  S  N  *  S  H  F  E  L  E   : G  C  S  V  A  P  D  Y  H  F  N  A  N  P  G  E  G  C  N  Y  G  *  G  C :   *  A  C  S  S  G  W  S  S  W  Y  H  C  V  K  P  W  C  S  P  A  R  L  C  P  C  N  N  L  G  S  *  R   : G  C  E  R  C  T  R  Q  D  P  R  I  L  G  W  R  C  P  P  W  N  R  C  L  *  S  F  G  T  W  S  F  R  H  F   : Y  W  K  A  S  S  F  L  I  G  C  *  R  R  S  W  S  E  K  S  A  A  N  V  A  R  *  V  *  A  N  Y  G  I  E  W  L  S  L  T  E  G  D  Y  *  K  P  H  C  H  *  M  G  H  P  T  C  C  S  S  S  P  K  V  V  S  M  Y  L  K  F  H  I  I  S  S  K  Q  Y  C  F  T  V  *  E  A  Y  N  L  I  *  I  L  V  S  V  *  *  V  Y  G  Y  V  K  L  F  M  V  L  E  N  *  Y  I  L  I  N  G  K  *  C  L  H  C  T  S  S  I  S  I  Y  H  H  I  V  E  L  C   </first_frame>
            <second_frame>  S  S  T  P  Y  N  F  C  L  F  I  N  S  Y  L  I  N  F  L  P  H  F  C  H  Y  Y  Y  C  F  L  F  S  T  I  L  V  A  I  C  S  L  V  F  T  K  H  K  V  F  S  T  Q  L  G  S  P  S :   L  E  G  E  R  E  I  L  L  K  M  E  E  V  T  N  V  T  E  Y  Q  E  I  A  K  K  K  L  P  K  M  V  Y  D  Y  Y  A  S  G  A  E  D  Q  W  T  L  A  E  N  R  N  A  F  S  R  I  L :   F  R  P  R  I  L  I  D  V  S  K  I  D  M  T  T  T  V  L  G  F  K  I  S  M  P  I  M  I  A  P  T  A  M  Q  K  M  A  H  P  E   : G  E  Y  A  T  A  R  A  A  S  A  A  G  T  I  M  :  T  L  S  S  W  A  T  S  S  V  E  E  V  A  S  T  G  P  G  I  R  F  F  Q  L  Y  :  V  Y  K  D  R  N  V  V  A  Q  L  V  R  R  A  E  K  A  G  F  K  A  I  A  L  T  V  D  T  P  R  L  G  R  R  E  A  D  I  K  N  R :   F  V  L  P  P  F  L  T  L  K  N  F  E  G  L  D  L  G  K  M  D  Q  :  A  N  D  S  G  L  A  S  Y  V  A  G  Q  I  D  R  T  L  S  W  K  :  D  V  Q  W  L  Q  T  I  T  S  M  P  I  L  V  K  G  V  I  T  A  E  D   : A  R  L  A  V  Q  A  G  A  A  G  I  I  V  S  N  H  G  A  R  Q  L  D  Y  V  P  A  T  I  S  A  L  E  E  :  V  V  K  G  A  Q  G  R  I  P  V  F  L  D  G  G  V  R  R  G  T  D  V  F  K  A  L  A  L  G  A  S  G  I  F  :  I  G  R  P  V  V  F  S  L  A  A  E  G  E  A  G  V  K  K  V  L  Q  M  L  R  D  E  F  E  L  T  M  A  L  S  G  C  R  S  L  K  E  I  T  R  N  H  I  V  T  E  W  D  T  P  H  A  A  L  P  A  P  R  L  *  A  C  T  *  S  F  I  L  F  H  Q  S  N  I  A  S  L  S  K  K  L  I  I  *  F  E  Y  S  F  L  F  N  E  F  T  V  M  L  S  F  S  W  Y  W  K  T  D  I  F  *  *  M  A  S  D  A  S  T  V  H  P  L  F  L  Y  I  I  I  S  W  N  F  A  </second_frame>
            <third_frame>   H  P  P  H  I  I  F  V  F  L  L  I  P  I  *  L  I  S  C  P  I  F  V  I  I  I  I  V  F  F  F  L  L  F  *  *  Q  F  V  H  W  F  S  L  S  T  K  C  S  Q  H  S  L  G  V  Q   : V  W  K  G  S  V  K  Y  C  *  R  W  R  K  *  P  M  L  R  S  I  R  R  S  P  R  K  S  C  Q  R  W  F  M  T  T  M  P  R  E  L  R  T  S  G  L  W  L  R  T  E  T  P  S  Q  E  F   : C  L  G  P  V  F  S  L  M  *  A  K  L  T  *  P  P  Q  C  *  D  S  R  F  Q  C  L  S  *  L  H  Q  Q  P  C  R  K  W  H  I  L  K  :  G  S  M  L  Q  Q  E  Q  H  Q  Q  Q  A  Q  S  * :   H  C  H  P  G  P  L  P  A  L  R  R  L  L  Q  Q  D  L  A  S  V  S  S  S  F  M :   S  T  R  T  E  M  L  L  L  N  L  *  G  E  L  K  R  Q  V  S  R  L  *  P  S  Q  L  I  P  Q  G  S  D  V  E  K  L  I  L  R  T   : D  S  C  C  H  H  F  *  H  *  R  T  L  K  D  W  T  L  A  R  W  T  K :   L  M  T  L  A  *  L  R  M  L  L  V  K  L  I  A  L  *  A  G  R :   M  F  S  G  S  R  L  S  L  Q  C  Q  S  W  *  R  V  *  L  R  L  R  M  :  L  G  L  Q  F  R  L  E  Q  L  V  S  L  C  Q  T  M  V  L  A  S  S  I  M  S  L  Q  Q  S  R  L  L  K  R :   L  *  K  V  H  K  A  G  S  P  Y  S  W  M  E  V  S  A  V  E  Q  M  S  L  K  L  W  H  L  E  L  Q  A  F  L :   L  E  G  Q  *  F  S  H  W  L  L  K  E  K  L  E  *  K  K  C  C  K  C  C  A  M  S  L  S  *  L  W  H  *  V  A  V  A  H  *  R  R  L  L  E  T  T  L  S  L  N  G  T  P  H  M  L  L  F  Q  P  Q  G  C  E  H  V  L  E  V  S  Y  Y  F  I  K  A  I  L  L  H  C  L  R  S  L  *  F  D  L  N  T  R  F  C  L  M  S  L  R  L  C  *  A  F  H  G  I  G  K  L  I  Y  S  D  K  W  Q  V  M  P  P  L  Y  I  L  Y  F  Y  I  S  S  Y  R  G  T  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93068" stop="93237"/>
                    <exon start="94123" stop="94293"/>
                    <exon start="94394" stop="94518"/>
                    <exon start="94895" stop="94941"/>
                    <exon start="95686" stop="95763"/>
                    <exon start="95851" stop="95975"/>
                    <exon start="96088" stop="96154"/>
                    <exon start="96247" stop="96309"/>
                    <exon start="96662" stop="96731"/>
                    <exon start="96833" stop="96933"/>
                    <exon start="97052" stop="97156"/>
                    <exon start="97236" stop="97430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1314</number_coding_nucleotides>
                  <number_encoded_amino_acids>438</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSTPYNFCLFINSYLINFLPHFCHYYYCFLFSTILVAICSLVFTKHKVFSTQLGSPSLEGEREILLKMEEVTNVTEYQEIAKKKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLDLGKMDQANDSGLASYVAGQIDRTLSWKDVQWLQTITSMPILVKGVITAEDARLAVQAGAAGIIVSNHGARQLDYVPATISALEEVVKGAQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVKKVLQMLRDEFELTMALSGCRSLKEITRNHIVTEWDTPHAALPAPRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="96086" e_stop="96154"/>
            <exon e_start="96247" e_stop="96309"/>
            <exon e_start="96662" e_stop="96731"/>
            <exon e_start="96833" e_stop="96933"/>
            <exon e_start="97052" e_stop="97156"/>
            <exon e_start="97236" e_stop="97650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.655" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96086" e_stop="96154" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.655" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96155" i_stop="96246" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96247" e_stop="96309" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="96310" i_stop="96661" i_length="352"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96662" e_stop="96731" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96732" i_stop="96832" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96833" e_stop="96933" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="96934" i_stop="97051" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97052" e_stop="97156" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="97236" e_stop="97650" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96086" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96088" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96117" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96124" stop="96154"/>
              <exon start="96247" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96265" stop="96309"/>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96662" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96694" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96717" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96730" stop="96731"/>
              <exon start="96833" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325298" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96841" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96843" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288231" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96861" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96864" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96868" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96921" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96927" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96929" stop="96933"/>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97052" stop="97156"/>
              <exon start="97236" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97069" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97072" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97075" stop="97156"/>
              <exon start="97236" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281940" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97076" stop="97156"/>
              <exon start="97236" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97112" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97117" stop="97156"/>
              <exon start="97236" stop="97568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97124" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97142" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97288" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97343" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97394" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97395" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97434" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAA : GCTAATGACTCTGGCTTAGCTTCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAG : GATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAGGGTGTAATTACGGCTGAGGATG : CTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGATTATGTCCCTGCAACAATCTCGGCTCTTGAAGAG : GTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT : ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</gDNA_template>
            <first_frame> R  F  V  L  P  P  F  L  T  L  K  N  F  E  G  L  D  L  G  K  M  D  Q  :  A  N  D  S  G  L  A  S  Y  V  A  G  Q  I  D  R  T  L  S  W  K  :  D  V  Q  W  L  Q  T  I  T  S  M  P  I  L  V  K  G  V  I  T  A  E  D   : A  R  L  A  V  Q  A  G  A  A  G  I  I  V  S  N  H  G  A  R  Q  L  D  Y  V  P  A  T  I  S  A  L  E  E  :  V  V  K  G  A  Q  G  R  I  P  V  F  L  D  G  G  V  R  R  G  T  D  V  F  K  A  L  A  L  G  A  S  G  I  F  :  I  G  R  P  V  V  F  S  L  A  A  E  G  E  A  G  V  K  K  V  L  Q  M  L  R  D  E  F  E  L  T  M  A  L  S  G  C  R  S  L  K  E  I  T  R  N  H  I  V  T  E  W  D  T  P  H  A  A  L  P  A  P  R  L  *  A  C  T  *  S  F  I  L  F  H  Q  S  N  I  A  S  L  S  K  K  L  I  I  *  F  E  Y  S  F  L  F  N  E  F  T  V  M  L  S  F  S  W  Y  W  K  T  D  I  F  *  *  M  A  S  D  A  S  T  V  H  P  L  F  L  Y  I  I  I  S  W  N  F  A  </first_frame>
            <second_frame>  D  S  C  C  H  H  F  *  H  *  R  T  L  K  D  W  T  L  A  R  W  T  K :   L  M  T  L  A  *  L  R  M  L  L  V  K  L  I  A  L  *  A  G  R :   M  F  S  G  S  R  L  S  L  Q  C  Q  S  W  *  R  V  *  L  R  L  R  M  :  L  G  L  Q  F  R  L  E  Q  L  V  S  L  C  Q  T  M  V  L  A  S  S  I  M  S  L  Q  Q  S  R  L  L  K  R :   L  *  K  V  H  K  A  G  S  P  Y  S  W  M  E  V  S  A  V  E  Q  M  S  L  K  L  W  H  L  E  L  Q  A  F  L :   L  E  G  Q  *  F  S  H  W  L  L  K  E  K  L  E  *  K  K  C  C  K  C  C  A  M  S  L  S  *  L  W  H  *  V  A  V  A  H  *  R  R  L  L  E  T  T  L  S  L  N  G  T  P  H  M  L  L  F  Q  P  Q  G  C  E  H  V  L  E  V  S  Y  Y  F  I  K  A  I  L  L  H  C  L  R  S  L  *  F  D  L  N  T  R  F  C  L  M  S  L  R  L  C  *  A  F  H  G  I  G  K  L  I  Y  S  D  K  W  Q  V  M  P  P  L  Y  I  L  Y  F  Y  I  S  S  Y  R  G  T  L  R </second_frame>
            <third_frame>   I  R  V  A  T  I  F  D  I  E  E  L  *  R  I  G  P  W  Q  D  G  P   : S  *  *  L  W  L  S  F  V  C  C  W  S  N  *  S  H  F  E  L  E   : G  C  S  V  A  P  D  Y  H  F  N  A  N  P  G  E  G  C  N  Y  G  *  G  C :   *  A  C  S  S  G  W  S  S  W  Y  H  C  V  K  P  W  C  S  P  A  R  L  C  P  C  N  N  L  G  S  *  R   : G  C  E  R  C  T  R  Q  D  P  R  I  L  G  W  R  C  P  P  W  N  R  C  L  *  S  F  G  T  W  S  F  R  H  F   : Y  W  K  A  S  S  F  L  I  G  C  *  R  R  S  W  S  E  K  S  A  A  N  V  A  R  *  V  *  A  N  Y  G  I  E  W  L  S  L  T  E  G  D  Y  *  K  P  H  C  H  *  M  G  H  P  T  C  C  S  S  S  P  K  V  V  S  M  Y  L  K  F  H  I  I  S  S  K  Q  Y  C  F  T  V  *  E  A  Y  N  L  I  *  I  L  V  S  V  *  *  V  Y  G  Y  V  K  L  F  M  V  L  E  N  *  Y  I  L  I  N  G  K  *  C  L  H  C  T  S  S  I  S  I  Y  H  H  I  V  E  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96086" stop="96154"/>
                    <exon start="96247" stop="96309"/>
                    <exon start="96662" stop="96731"/>
                    <exon start="96833" stop="96933"/>
                    <exon start="97052" stop="97156"/>
                    <exon start="97236" stop="97430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVLPPFLTLKNFEGLDLGKMDQANDSGLASYVAGQIDRTLSWKDVQWLQTITSMPILVKGVITAEDARLAVQAGAAGIIVSNHGARQLDYVPATISALEEVVKGAQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVKKVLQMLRDEFELTMALSGCRSLKEITRNHIVTEWDTPHAALPAPRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="93214" e_stop="93237"/>
            <exon e_start="94113" e_stop="94159"/>
            <exon e_start="97098" e_stop="97156"/>
            <exon e_start="97236" e_stop="97650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93214" e_stop="93237" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="93238" i_stop="94112" i_length="875"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94113" e_stop="94159" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94160" i_stop="97097" i_length="2938"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97098" e_stop="97156" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97157" i_stop="97235" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97236" e_stop="97650" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93214" stop="93237"/>
              <exon start="94113" stop="94159"/>
              <exon start="97098" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93215" stop="93237"/>
              <exon start="94113" stop="94159"/>
              <exon start="97098" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93215" stop="93237"/>
              <exon start="94113" stop="94159"/>
              <exon start="97098" stop="97156"/>
              <exon start="97236" stop="97585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94113" stop="94159"/>
              <exon start="97098" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97112" stop="97156"/>
              <exon start="97236" stop="97545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97117" stop="97156"/>
              <exon start="97236" stop="97568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97120" stop="97156"/>
              <exon start="97236" stop="97540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97124" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97142" stop="97156"/>
              <exon start="97236" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97288" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97343" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97394" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97395" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97434" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAACACAGCTTGGGAGTCCAAG : CGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAG : GTGTCCGCCGTGGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTT : ATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</gDNA_template>
            <first_frame> L  N  T  A  W  E  S  K  :  R  Q  E  V  W  K  G  S  V  K  Y  C  *  R  W  R :   C  P  P  W  N  R  C  L  *  S  F  G  T  W  S  F  R  H  F   : Y  W  K  A  S  S  F  L  I  G  C  *  R  R  S  W  S  E  K  S  A  A  N  V  A  R  *  V  *  A  N  Y  G  I  E  W  L  S  L  T  E  G  D  Y  *  K  P  H  C  H  *  M  G  H  P  T  C  C  S  S  S  P  K  V  V  S  M  Y  L  K  F  H  I  I  S  S  K  Q  Y  C  F  T  V  *  E  A  Y  N  L  I  *  I  L  V  S  V  *  *  V  Y  G  Y  V  K  L  F  M  V  L  E  N  *  Y  I  L  I  N  G  K  *  C  L  H  C  T  S  S  I  S  I  Y  H  H  I  V  E  L  C   </first_frame>
            <second_frame>  S  T  Q  L  G  S  P  S :   V  R  K  F  G  R  G  A  *  N  T  A  K  D  G   : G  V  R  R  G  T  D  V  F  K  A  L  A  L  G  A  S  G  I  F  :  I  G  R  P  V  V  F  S  L  A  A  E  G  E  A  G  V  K  K  V  L  Q  M  L  R  D  E  F  E  L  T  M  A  L  S  G  C  R  S  L  K  E  I  T  R  N  H  I  V  T  E  W  D  T  P  H  A  A  L  P  A  P  R  L  *  A  C  T  *  S  F  I  L  F  H  Q  S  N  I  A  S  L  S  K  K  L  I  I  *  F  E  Y  S  F  L  F  N  E  F  T  V  M  L  S  F  S  W  Y  W  K  T  D  I  F  *  *  M  A  S  D  A  S  T  V  H  P  L  F  L  Y  I  I  I  S  W  N  F  A  </second_frame>
            <third_frame>   Q  H  S  L  G  V  Q   : A  S  G  S  L  E  G  E  R  E  I  L  L  K  M  E  :  V  S  A  V  E  Q  M  S  L  K  L  W  H  L  E  L  Q  A  F  L :   L  E  G  Q  *  F  S  H  W  L  L  K  E  K  L  E  *  K  K  C  C  K  C  C  A  M  S  L  S  *  L  W  H  *  V  A  V  A  H  *  R  R  L  L  E  T  T  L  S  L  N  G  T  P  H  M  L  L  F  Q  P  Q  G  C  E  H  V  L  E  V  S  Y  Y  F  I  K  A  I  L  L  H  C  L  R  S  L  *  F  D  L  N  T  R  F  C  L  M  S  L  R  L  C  *  A  F  H  G  I  G  K  L  I  Y  S  D  K  W  Q  V  M  P  P  L  Y  I  L  Y  F  Y  I  S  S  Y  R  G  T  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94141" stop="94159"/>
                    <exon start="97098" stop="97156"/>
                    <exon start="97236" stop="97430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTAKDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVKKVLQMLRDEFELTMALSGCRSLKEITRNHIVTEWDTPHAALPAPRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="97203" e_stop="97650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="97203" e_stop="97650" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97203" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97284" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97288" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97343" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97394" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97395" stop="97586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97412" stop="97650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97434" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCTTTTATCTTTATGTGGTGGTTTTCGCAGATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTACATCCTCTATTTCTATATATCATCATATCGTGGAACTTTGCGC</gDNA_template>
            <first_frame> Q  S  F  I  F  M  W  W  F  S  Q  I  G  R  P  V  V  F  S  L  A  A  E  G  E  A  G  V  K  K  V  L  Q  M  L  R  D  E  F  E  L  T  M  A  L  S  G  C  R  S  L  K  E  I  T  R  N  H  I  V  T  E  W  D  T  P  H  A  A  L  P  A  P  R  L  *  A  C  T  *  S  F  I  L  F  H  Q  S  N  I  A  S  L  S  K  K  L  I  I  *  F  E  Y  S  F  L  F  N  E  F  T  V  M  L  S  F  S  W  Y  W  K  T  D  I  F  *  *  M  A  S  D  A  S  T  V  H  P  L  F  L  Y  I  I  I  S  W  N  F  A  </first_frame>
            <second_frame>  N  L  L  S  L  C  G  G  F  R  R  L  E  G  Q  *  F  S  H  W  L  L  K  E  K  L  E  *  K  K  C  C  K  C  C  A  M  S  L  S  *  L  W  H  *  V  A  V  A  H  *  R  R  L  L  E  T  T  L  S  L  N  G  T  P  H  M  L  L  F  Q  P  Q  G  C  E  H  V  L  E  V  S  Y  Y  F  I  K  A  I  L  L  H  C  L  R  S  L  *  F  D  L  N  T  R  F  C  L  M  S  L  R  L  C  *  A  F  H  G  I  G  K  L  I  Y  S  D  K  W  Q  V  M  P  P  L  Y  I  L  Y  F  Y  I  S  S  Y  R  G  T  L  R </second_frame>
            <third_frame>   I  F  Y  L  Y  V  V  V  F  A  D  W  K  A  S  S  F  L  I  G  C  *  R  R  S  W  S  E  K  S  A  A  N  V  A  R  *  V  *  A  N  Y  G  I  E  W  L  S  L  T  E  G  D  Y  *  K  P  H  C  H  *  M  G  H  P  T  C  C  S  S  S  P  K  V  V  S  M  Y  L  K  F  H  I  I  S  S  K  Q  Y  C  F  T  V  *  E  A  Y  N  L  I  *  I  L  V  S  V  *  *  V  Y  G  Y  V  K  L  F  M  V  L  E  N  *  Y  I  L  I  N  G  K  *  C  L  H  C  T  S  S  I  S  I  Y  H  H  I  V  E  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97203" stop="97430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSFIFMWWFSQIGRPVVFSLAAEGEAGVKKVLQMLRDEFELTMALSGCRSLKEITRNHIVTEWDTPHAALPAPRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="98945" PGL_stop="104154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98945" e_stop="99099"/>
            <exon e_start="99195" e_stop="99401"/>
            <exon e_start="99853" e_stop="99988"/>
            <exon e_start="100181" e_stop="100229"/>
            <exon e_start="100310" e_stop="100637"/>
            <exon e_start="101434" e_stop="101513"/>
            <exon e_start="101774" e_stop="101821"/>
            <exon e_start="102235" e_stop="102381"/>
            <exon e_start="102985" e_stop="103057"/>
            <exon e_start="103149" e_stop="103224"/>
            <exon e_start="103661" e_stop="103765"/>
            <exon e_start="103865" e_stop="104154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.788" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.777" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.666" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98945" e_stop="99099" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99195" e_stop="99401" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.788" acc_prob="0.987">
            <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99853" e_stop="99988" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.777" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99989" i_stop="100180" i_length="192"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100181" e_stop="100229" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.986">
            <gDNA_intron_boundary i_start="100230" i_stop="100309" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100310" e_stop="100637" e_length="328"/>
          </exon>
          <intron i_serial="5" don_prob="0.666" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100638" i_stop="101433" i_length="796"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101434" e_stop="101513" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101514" i_stop="101773" i_length="260"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="101774" e_stop="101821" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.971">
            <gDNA_intron_boundary i_start="101822" i_stop="102234" i_length="413"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="102235" e_stop="102381" e_length="147"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102382" i_stop="102984" i_length="603"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="102985" e_stop="103057" e_length="73"/>
          </exon>
          <intron i_serial="9" don_prob="0.946" acc_prob="0.996">
            <gDNA_intron_boundary i_start="103058" i_stop="103148" i_length="91"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="103149" e_stop="103224" e_length="76"/>
          </exon>
          <intron i_serial="10" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103225" i_stop="103660" i_length="436"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="103661" e_stop="103765" e_length="105"/>
          </exon>
          <intron i_serial="11" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103766" i_stop="103864" i_length="99"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="103865" e_stop="104154" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98945" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98951" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98958" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98958" stop="99099"/>
              <exon start="99195" stop="99400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98964" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98964" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98970" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98970" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98970" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99065" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99066" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99274" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99342" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100214" stop="100229"/>
              <exon start="100310" stop="100637"/>
              <exon start="101434" stop="101513"/>
              <exon start="101774" stop="101821"/>
              <exon start="102235" stop="102271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101434" stop="101513"/>
              <exon start="101774" stop="101821"/>
              <exon start="102235" stop="102381"/>
              <exon start="102985" stop="103057"/>
              <exon start="103149" stop="103198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102235" stop="102381"/>
              <exon start="102985" stop="103057"/>
              <exon start="103149" stop="103224"/>
              <exon start="103661" stop="103765"/>
              <exon start="103865" stop="104152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553823" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102261" stop="102381"/>
              <exon start="102985" stop="103057"/>
              <exon start="103149" stop="103224"/>
              <exon start="103661" stop="103765"/>
              <exon start="103865" stop="104154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377190" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAAAGAGCTACAGAGGTTTAAGCAAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAG : GTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG : GATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAG : TGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGG : TGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATGTACCAAGCCACAAGAATATTTGCTTCAAATTTGGGTGTCAAGAAGGCAGAACGCTTCTACAAGTTGGTCTTACTCCCACGAGTTAGAGATGATATTCGCAAGAATAAGAGATTGCATTTTGCTCTGTATCAGTCCTTGAAGAAATCTCTTTATAAGCCTGCTGCCTTTAATAAGGGAATCTTGTTTCCTTTGTGTGAG : TCAAGGACATGCACCTTGAGGGAGGCTGTGATCTTTGGGAGTGTTATTGAGAAGGTCTCCATTCCGCATCTTCATGCTAG : TGTAGCGCTGCTGAAACTTGCAGAGATGGAGTATTGTGGCACAACAAG : TTATTTCATCAAGTTACTGATTGAGAAGAAATATGCTTTGCCCTATCGTGTACTTGATGCCATGGTAGCACACTTCATGAATTTCTTTGATGAAACAAGAGTCATGCCTGTGATCTGGCACCTGTCACTTCTTGTATTTGTGCAGAG : GTACAAAACTGAGATGAGGAAGGAGGATAAAGCTAACATAAGGGCACTTGTTGAAAGACAAAGACATAGATTG : ATTACACCAGATATATTGAGGGAAATCGAAAAGAGCAGAAGTCGTGGGGAAAAGGAGGATGATCCAATGTTAATTG : CAAGTCCTCTTTCTGTGATCAATAAAGCAATTGAAGAAGATAGGTTTGATATCCCCGATGTTCCTATGGAGGAGGACTAGATTTTCTCAGCAACCTCTATACGTG : ATGCAGTATGTGATGGGGATGGTATACTAGCAGATTCAGGTTTCAATATGTAATAGAGATCGAGCTGTGTGATAAGATAGATGAGCATACATGTGTGGGCTGTTGGAGTTGAGCTAGAGATTTTGCAATATATTCTTAAATGATATTTATATTTTTTGATTCCTGTCTTCATCGGCATATGCCTAAGCAGGTTTATGCAGCGACGAACCAGAAAGTTGTAACCGCCATGTTTTTTTGAAGTTTAGTGTATCAATGATACTCCCCTGAGAATACATGGGTTAAATTTTACT</gDNA_template>
            <first_frame> P  K  E  L  Q  R  F  K  Q  K  Q  K  W  G  R  N  E  N  A  S  Q  I  Q  N  P  S  L  T  M  I  Q  N  P  K  L  P  R  R  N  A  P  K  L  L  N  L  T  S  S  N  N  R :   L  Y  R  L  V  L  V  R  R  Y  *  R  R  R  Y  F  S  R  R  K  *  M  R  R  R  H  E  R  E  I  L  M  L  *  C  F  R  R  M  L  Q  L  E  L  L  R  R  M  T  M  T  L  I  I  L  V  G  F  R  R  L  K  V  N  L  V  I  W  R :   M  R  L  T  S  C  Y  W  R  M  R  S  Y  W  R  L  F  I  L  H  K  I  A  L  N  A  H  W  A  K  S  L  L  K  R  A  R  N  R  T  H  K  F  L  Q  :  C  N  Q  C  L  N  W  M  N  R  S  L  N  Y  T  K   : V  L  A  S  I  L  A  N  T  I  Q  A  R  C  Q  K  R  S  N  I  F  L  H  C  N  I  G  K  M  F  Y  I  *  Q  N  L  R  N  G  H  Q  M  Q  C  T  K  P  Q  E  Y  L  L  Q  I  W  V  S  R  R  Q  N  A  S  T  S  W  S  Y  S  H  E  L  E  M  I  F  A  R  I  R  D  C  I  L  L  C  I  S  P  *  R  N  L  F  I  S  L  L  P  L  I  R  E  S  C  F  L  C  V  S :   Q  G  H  A  P  *  G  R  L  *  S  L  G  V  L  L  R  R  S  P  F  R  I  F  M  L   : V  *  R  C  *  N  L  Q  R  W  S  I  V  A  Q  Q   : V  I  S  S  S  Y  *  L  R  R  N  M  L  C  P  I  V  Y  L  M  P  W  *  H  T  S  *  I  S  L  M  K  Q  E  S  C  L  *  S  G  T  C  H  F  L  Y  L  C  R   : G  T  K  L  R  *  G  R  R  I  K  L  T  *  G  H  L  L  K  D  K  D  I  D  * :   L  H  Q  I  Y  *  G  K  S  K  R  A  E  V  V  G  K  R  R  M  I  Q  C  *  L  :  Q  V  L  F  L  *  S  I  K  Q  L  K  K  I  G  L  I  S  P  M  F  L  W  R  R  T  R  F  S  Q  Q  P  L  Y  V  :  M  Q  Y  V  M  G  M  V  Y  *  Q  I  Q  V  S  I  C  N  R  D  R  A  V  *  *  D  R  *  A  Y  M  C  G  L  L  E  L  S  *  R  F  C  N  I  F  L  N  D  I  Y  I  F  *  F  L  S  S  S  A  Y  A  *  A  G  L  C  S  D  E  P  E  S  C  N  R  H  V  F  L  K  F  S  V  S  M  I  L  P  *  E  Y  M  G  *  I  L   </first_frame>
            <second_frame>  P  K  S  Y  R  G  L  S  K  S  K  N  G  E  E  T  R  T  P  H  K  S  R  T  L  P  *  R  *  F  K  I  Q  S  F  L  E  E  T  L  Q  S  S  *  I  S  P  A  A  T  T   : G  Y  I  V  *  Y  *  F  E  D  I  E  G  G  V  T  S  A  E  G  S  R  *  G  G  D  T  R  E  K  S  *  C  Y  S  V  F  G  G  C  C  N  *  S  C  *  G  G  *  R  *  H  *  *  F  *  W  V  S  G  D  S  K  S  I  W  *  F  G   : G  *  G  *  Q  V  A  I  G  G  *  E  A  I  G  G  F  L  F  Y  T  K  S  P  *  T  H  I  G  P  N  P  Y  *  K  E  Q  G  T  E  R  T  S  F  F  S :   A  T  N  A  *  I  G  *  I  D  H  *  I  I  Q  R  :  C  W  Q  A  S  *  Q  I  Q  F  R  Q  D  A  K  S  V  Q  T  Y  S  F  I  A  I  L  G  R  C  S  I  F  N  R  T  *  E  M  V  T  K  C  N  V  P  S  H  K  N  I  C  F  K  F  G  C  Q  E  G  R  T  L  L  Q  V  G  L  T  P  T  S  *  R  *  Y  S  Q  E  *  E  I  A  F  C  S  V  S  V  L  E  E  I  S  L  *  A  C  C  L  *  *  G  N  L  V  S  F  V  *   : V  K  D  M  H  L  E  G  G  C  D  L  W  E  C  Y  *  E  G  L  H  S  A  S  S  C  *  :  C  S  A  A  E  T  C  R  D  G  V  L  W  H  N  K  :  L  F  H  Q  V  T  D  *  E  E  I  C  F  A  L  S  C  T  *  C  H  G  S  T  L  H  E  F  L  *  *  N  K  S  H  A  C  D  L  A  P  V  T  S  C  I  C  A  E  :  V  Q  N  *  D  E  E  G  G  *  S  *  H  K  G  T  C  *  K  T  K  T  *  I   : D  Y  T  R  Y  I  E  G  N  R  K  E  Q  K  S  W  G  K  G  G  *  S  N  V  N  C :   K  S  S  F  C  D  Q  *  S  N  *  R  R  *  V  *  Y  P  R  C  S  Y  G  G  G  L  D  F  L  S  N  L  Y  T  * :   C  S  M  *  W  G  W  Y  T  S  R  F  R  F  Q  Y  V  I  E  I  E  L  C  D  K  I  D  E  H  T  C  V  G  C  W  S  *  A  R  D  F  A  I  Y  S  *  M  I  F  I  F  F  D  S  C  L  H  R  H  M  P  K  Q  V  Y  A  A  T  N  Q  K  V  V  T  A  M  F  F  *  S  L  V  Y  Q  *  Y  S  P  E  N  T  W  V  K  F  Y  </second_frame>
            <third_frame>   Q  R  A  T  E  V  *  A  K  A  K  M  G  K  K  R  E  R  L  T  N  P  E  P  F  L  D  D  D  S  K  S  K  A  S  S  K  K  R  S  K  A  P  K  S  H  Q  Q  Q  Q  Q  :  V  I  S  S  S  I  S  S  K  I  L  K  E  A  L  L  Q  Q  K  E  V  D  E  E  E  T  R  E  R  N  P  N  A  I  V  F  S  E  D  V  A  T  R  A  V  E  E  D  D  D  D  I  D  N  F  S  G  F  Q  E  T  Q  S  Q  F  G  D  L  E  :  D  E  V  D  K  L  L  L  E  D  E  K  L  L  E  A  F  Y  S  T  Q  N  R  P  E  R  T  L  G  Q  I  L  I  E  K  S  K  E  Q  N  A  Q  V  S  S   : V  Q  P  M  P  K  L  D  E  S  I  I  E  L  Y  K  G :   V  G  K  H  L  S  K  Y  N  S  G  K  M  P  K  A  F  K  H  I  P  S  L  Q  Y  W  E  D  V  L  Y  L  T  E  P  E  K  W  S  P  N  A  M  Y  Q  A  T  R  I  F  A  S  N  L  G  V  K  K  A  E  R  F  Y  K  L  V  L  L  P  R  V  R  D  D  I  R  K  N  K  R  L  H  F  A  L  Y  Q  S  L  K  K  S  L  Y  K  P  A  A  F  N  K  G  I  L  F  P  L  C  E  :  S  R  T  C  T  L  R  E  A  V  I  F  G  S  V  I  E  K  V  S  I  P  H  L  H  A  S :   V  A  L  L  K  L  A  E  M  E  Y  C  G  T  T  S :   Y  F  I  K  L  L  I  E  K  K  Y  A  L  P  Y  R  V  L  D  A  M  V  A  H  F  M  N  F  F  D  E  T  R  V  M  P  V  I  W  H  L  S  L  L  V  F  V  Q  R :   Y  K  T  E  M  R  K  E  D  K  A  N  I  R  A  L  V  E  R  Q  R  H  R  L  :  I  T  P  D  I  L  R  E  I  E  K  S  R  S  R  G  E  K  E  D  D  P  M  L  I   : A  S  P  L  S  V  I  N  K  A  I  E  E  D  R  F  D  I  P  D  V  P  M  E  E  D  *  I  F  S  A  T  S  I  R   : D  A  V  C  D  G  D  G  I  L  A  D  S  G  F  N  M  *  *  R  S  S  C  V  I  R  *  M  S  I  H  V  W  A  V  G  V  E  L  E  I  L  Q  Y  I  L  K  *  Y  L  Y  F  L  I  P  V  F  I  G  I  C  L  S  R  F  M  Q  R  R  T  R  K  L  *  P  P  C  F  F  E  V  *  C  I  N  D  T  P  L  R  I  H  G  L  N  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98968" stop="99099"/>
                    <exon start="99195" stop="99401"/>
                    <exon start="99853" stop="99988"/>
                    <exon start="100181" stop="100229"/>
                    <exon start="100310" stop="100637"/>
                    <exon start="101434" stop="101513"/>
                    <exon start="101774" stop="101821"/>
                    <exon start="102235" stop="102381"/>
                    <exon start="102985" stop="103057"/>
                    <exon start="103149" stop="103224"/>
                    <exon start="103661" stop="103740"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1353</number_coding_nucleotides>
                  <number_encoded_amino_acids>451</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKAKMGKKRERLTNPEPFLDDDSKSKASSKKRSKAPKSHQQQQQVISSSISSKILKEALLQQKEVDEEETRERNPNAIVFSEDVATRAVEEDDDDIDNFSGFQETQSQFGDLEDEVDKLLLEDEKLLEAFYSTQNRPERTLGQILIEKSKEQNAQVSSVQPMPKLDESIIELYKGVGKHLSKYNSGKMPKAFKHIPSLQYWEDVLYLTEPEKWSPNAMYQATRIFASNLGVKKAERFYKLVLLPRVRDDIRKNKRLHFALYQSLKKSLYKPAAFNKGILFPLCESRTCTLREAVIFGSVIEKVSIPHLHASVALLKLAEMEYCGTTSYFIKLLIEKKYALPYRVLDAMVAHFMNFFDETRVMPVIWHLSLLVFVQRYKTEMRKEDKANIRALVERQRHRLITPDILREIEKSRSRGEKEDDPMLIASPLSVINKAIEEDRFDIPDVPMEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98945" e_stop="99099"/>
            <exon e_start="99195" e_stop="99401"/>
            <exon e_start="99853" e_stop="99988"/>
            <exon e_start="100181" e_stop="100229"/>
            <exon e_start="100310" e_stop="100637"/>
            <exon e_start="101434" e_stop="101513"/>
            <exon e_start="101774" e_stop="101821"/>
            <exon e_start="102235" e_stop="102381"/>
            <exon e_start="102985" e_stop="103057"/>
            <exon e_start="103149" e_stop="103646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.788" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.777" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.666" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98945" e_stop="99099" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99100" i_stop="99194" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99195" e_stop="99401" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.788" acc_prob="0.987">
            <gDNA_intron_boundary i_start="99402" i_stop="99852" i_length="451"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99853" e_stop="99988" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.777" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99989" i_stop="100180" i_length="192"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100181" e_stop="100229" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.986">
            <gDNA_intron_boundary i_start="100230" i_stop="100309" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100310" e_stop="100637" e_length="328"/>
          </exon>
          <intron i_serial="5" don_prob="0.666" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100638" i_stop="101433" i_length="796"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101434" e_stop="101513" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101514" i_stop="101773" i_length="260"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="101774" e_stop="101821" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.971">
            <gDNA_intron_boundary i_start="101822" i_stop="102234" i_length="413"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="102235" e_stop="102381" e_length="147"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102382" i_stop="102984" i_length="603"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="102985" e_stop="103057" e_length="73"/>
          </exon>
          <intron i_serial="9" don_prob="0.946" acc_prob="0.996">
            <gDNA_intron_boundary i_start="103058" i_stop="103148" i_length="91"/>
          </intron>
          <exon e_serial="10" e_score="0.972">
            <gDNA_exon_boundary e_start="103149" e_stop="103646" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98945" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98951" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98958" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98958" stop="99099"/>
              <exon start="99195" stop="99400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98964" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98964" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98970" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98970" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98970" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99065" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99066" stop="99099"/>
              <exon start="99195" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99274" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99342" stop="99401"/>
              <exon start="99853" stop="99988"/>
              <exon start="100181" stop="100229"/>
              <exon start="100310" stop="100400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100214" stop="100229"/>
              <exon start="100310" stop="100637"/>
              <exon start="101434" stop="101513"/>
              <exon start="101774" stop="101821"/>
              <exon start="102235" stop="102271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101434" stop="101513"/>
              <exon start="101774" stop="101821"/>
              <exon start="102235" stop="102381"/>
              <exon start="102985" stop="103057"/>
              <exon start="103149" stop="103198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103022" stop="103057"/>
              <exon start="103149" stop="103646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338517" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAAAGAGCTACAGAGGTTTAAGCAAAAGCAAAAATGGGGAAGAAACGAGAACGCCTCACAAATCCAGAACCCTTCCTTGACGATGATTCAAAATCCAAAGCTTCCTCGAAGAAACGCTCCAAAGCTCCTAAATCTCACCAGCAGCAACAACAG : GTTATATCGTCTAGTATTAGTTCGAAGATATTGAAGGAGGCGTTACTTCAGCAGAAGGAAGTAGATGAGGAGGAGACACGAGAGAGAAATCCTAATGCTATAGTGTTTTCGGAGGATGTTGCAACTAGAGCTGTTGAGGAGGATGACGATGACATTGATAATTTTAGTGGGTTTCAGGAGACTCAAAGTCAATTTGGTGATTTGGAG : GATGAGGTTGACAAGTTGCTATTGGAGGATGAGAAGCTATTGGAGGCTTTTTATTCTACACAAAATCGCCCTGAACGCACATTGGGCCAAATCCTTATTGAAAAGAGCAAGGAACAGAACGCACAAGTTTCTTCAG : TGCAACCAATGCCTAAATTGGATGAATCGATCATTGAATTATACAAAGG : TGTTGGCAAGCATCTTAGCAAATACAATTCAGGCAAGATGCCAAAAGCGTTCAAACATATTCCTTCATTGCAATATTGGGAAGATGTTCTATATTTAACAGAACCTGAGAAATGGTCACCAAATGCAATGTACCAAGCCACAAGAATATTTGCTTCAAATTTGGGTGTCAAGAAGGCAGAACGCTTCTACAAGTTGGTCTTACTCCCACGAGTTAGAGATGATATTCGCAAGAATAAGAGATTGCATTTTGCTCTGTATCAGTCCTTGAAGAAATCTCTTTATAAGCCTGCTGCCTTTAATAAGGGAATCTTGTTTCCTTTGTGTGAG : TCAAGGACATGCACCTTGAGGGAGGCTGTGATCTTTGGGAGTGTTATTGAGAAGGTCTCCATTCCGCATCTTCATGCTAG : TGTAGCGCTGCTGAAACTTGCAGAGATGGAGTATTGTGGCACAACAAG : TTATTTCATCAAGTTACTGATTGAGAAGAAATATGCTTTGCCCTATCGTGTACTTGATGCCATGGTAGCACACTTCATGAATTTCTTTGATGAAACAAGAGTCATGCCTGTGATCTGGCACCTGTCACTTCTTGTATTTGTGCAGAG : GTACAAAACTGAGATGAGGAAGGAGGATAAAGCTAACATAAGGGCACTTGTTGAAAGACAAAGACATAGATTG : ATTACACCAGATATATTGAGGGAAATCGAAAAGAGCAGAAGTCGTGGGGAAAAGGAGGATGATCCAATGTTAATTGATATCCTCTCATTGATGGTTTAAATCTTTCTGTTACATATCTGCTTGAGCTTAATTTGGTCTGTTTATACTGTGTCGCCTGCTCTTGCCATAACATAGTCGGGTTCTTAATGTTTTAAAAACTGTTGATGAAATAAAAAATCTTTAAACCTTTCGTGCCAGTTCATGCTTAAATTCTGCTATTTCCTGTGAGTGCGTGCATATCTGCATCGATGGAATAGGTTGTCATGCACAACAACAATCTTCTGTTTGTAAGTTTTGTGTATTGTTGAAGTTTGTTGCTTTTTGCAAGATGGATAATTTTTAAATTGTTTATTTCCTGTTGTTCTGTAACGACTGAAGTAAAATAGTAGATGTAGCTATGATTTATTCATGTTGCTATTAATATTTTTTCTGCTGCATCATTGGAAAATATATTTTCTT</gDNA_template>
            <first_frame> P  K  E  L  Q  R  F  K  Q  K  Q  K  W  G  R  N  E  N  A  S  Q  I  Q  N  P  S  L  T  M  I  Q  N  P  K  L  P  R  R  N  A  P  K  L  L  N  L  T  S  S  N  N  R :   L  Y  R  L  V  L  V  R  R  Y  *  R  R  R  Y  F  S  R  R  K  *  M  R  R  R  H  E  R  E  I  L  M  L  *  C  F  R  R  M  L  Q  L  E  L  L  R  R  M  T  M  T  L  I  I  L  V  G  F  R  R  L  K  V  N  L  V  I  W  R :   M  R  L  T  S  C  Y  W  R  M  R  S  Y  W  R  L  F  I  L  H  K  I  A  L  N  A  H  W  A  K  S  L  L  K  R  A  R  N  R  T  H  K  F  L  Q  :  C  N  Q  C  L  N  W  M  N  R  S  L  N  Y  T  K   : V  L  A  S  I  L  A  N  T  I  Q  A  R  C  Q  K  R  S  N  I  F  L  H  C  N  I  G  K  M  F  Y  I  *  Q  N  L  R  N  G  H  Q  M  Q  C  T  K  P  Q  E  Y  L  L  Q  I  W  V  S  R  R  Q  N  A  S  T  S  W  S  Y  S  H  E  L  E  M  I  F  A  R  I  R  D  C  I  L  L  C  I  S  P  *  R  N  L  F  I  S  L  L  P  L  I  R  E  S  C  F  L  C  V  S :   Q  G  H  A  P  *  G  R  L  *  S  L  G  V  L  L  R  R  S  P  F  R  I  F  M  L   : V  *  R  C  *  N  L  Q  R  W  S  I  V  A  Q  Q   : V  I  S  S  S  Y  *  L  R  R  N  M  L  C  P  I  V  Y  L  M  P  W  *  H  T  S  *  I  S  L  M  K  Q  E  S  C  L  *  S  G  T  C  H  F  L  Y  L  C  R   : G  T  K  L  R  *  G  R  R  I  K  L  T  *  G  H  L  L  K  D  K  D  I  D  * :   L  H  Q  I  Y  *  G  K  S  K  R  A  E  V  V  G  K  R  R  M  I  Q  C  *  L  I  S  S  H  *  W  F  K  S  F  C  Y  I  S  A  *  A  *  F  G  L  F  I  L  C  R  L  L  L  P  *  H  S  R  V  L  N  V  L  K  T  V  D  E  I  K  N  L  *  T  F  R  A  S  S  C  L  N  S  A  I  S  C  E  C  V  H  I  C  I  D  G  I  G  C  H  A  Q  Q  Q  S  S  V  C  K  F  C  V  L  L  K  F  V  A  F  C  K  M  D  N  F  *  I  V  Y  F  L  L  F  C  N  D  *  S  K  I  V  D  V  A  M  I  Y  S  C  C  Y  *  Y  F  F  C  C  I  I  G  K  Y  I  F   </first_frame>
            <second_frame>  P  K  S  Y  R  G  L  S  K  S  K  N  G  E  E  T  R  T  P  H  K  S  R  T  L  P  *  R  *  F  K  I  Q  S  F  L  E  E  T  L  Q  S  S  *  I  S  P  A  A  T  T   : G  Y  I  V  *  Y  *  F  E  D  I  E  G  G  V  T  S  A  E  G  S  R  *  G  G  D  T  R  E  K  S  *  C  Y  S  V  F  G  G  C  C  N  *  S  C  *  G  G  *  R  *  H  *  *  F  *  W  V  S  G  D  S  K  S  I  W  *  F  G   : G  *  G  *  Q  V  A  I  G  G  *  E  A  I  G  G  F  L  F  Y  T  K  S  P  *  T  H  I  G  P  N  P  Y  *  K  E  Q  G  T  E  R  T  S  F  F  S :   A  T  N  A  *  I  G  *  I  D  H  *  I  I  Q  R  :  C  W  Q  A  S  *  Q  I  Q  F  R  Q  D  A  K  S  V  Q  T  Y  S  F  I  A  I  L  G  R  C  S  I  F  N  R  T  *  E  M  V  T  K  C  N  V  P  S  H  K  N  I  C  F  K  F  G  C  Q  E  G  R  T  L  L  Q  V  G  L  T  P  T  S  *  R  *  Y  S  Q  E  *  E  I  A  F  C  S  V  S  V  L  E  E  I  S  L  *  A  C  C  L  *  *  G  N  L  V  S  F  V  *   : V  K  D  M  H  L  E  G  G  C  D  L  W  E  C  Y  *  E  G  L  H  S  A  S  S  C  *  :  C  S  A  A  E  T  C  R  D  G  V  L  W  H  N  K  :  L  F  H  Q  V  T  D  *  E  E  I  C  F  A  L  S  C  T  *  C  H  G  S  T  L  H  E  F  L  *  *  N  K  S  H  A  C  D  L  A  P  V  T  S  C  I  C  A  E  :  V  Q  N  *  D  E  E  G  G  *  S  *  H  K  G  T  C  *  K  T  K  T  *  I   : D  Y  T  R  Y  I  E  G  N  R  K  E  Q  K  S  W  G  K  G  G  *  S  N  V  N  *  Y  P  L  I  D  G  L  N  L  S  V  T  Y  L  L  E  L  N  L  V  C  L  Y  C  V  A  C  S  C  H  N  I  V  G  F  L  M  F  *  K  L  L  M  K  *  K  I  F  K  P  F  V  P  V  H  A  *  I  L  L  F  P  V  S  A  C  I  S  A  S  M  E  *  V  V  M  H  N  N  N  L  L  F  V  S  F  V  Y  C  *  S  L  L  L  F  A  R  W  I  I  F  K  L  F  I  S  C  C  S  V  T  T  E  V  K  *  *  M  *  L  *  F  I  H  V  A  I  N  I  F  S  A  A  S  L  E  N  I  F  S  </second_frame>
            <third_frame>   Q  R  A  T  E  V  *  A  K  A  K  M  G  K  K  R  E  R  L  T  N  P  E  P  F  L  D  D  D  S  K  S  K  A  S  S  K  K  R  S  K  A  P  K  S  H  Q  Q  Q  Q  Q  :  V  I  S  S  S  I  S  S  K  I  L  K  E  A  L  L  Q  Q  K  E  V  D  E  E  E  T  R  E  R  N  P  N  A  I  V  F  S  E  D  V  A  T  R  A  V  E  E  D  D  D  D  I  D  N  F  S  G  F  Q  E  T  Q  S  Q  F  G  D  L  E  :  D  E  V  D  K  L  L  L  E  D  E  K  L  L  E  A  F  Y  S  T  Q  N  R  P  E  R  T  L  G  Q  I  L  I  E  K  S  K  E  Q  N  A  Q  V  S  S   : V  Q  P  M  P  K  L  D  E  S  I  I  E  L  Y  K  G :   V  G  K  H  L  S  K  Y  N  S  G  K  M  P  K  A  F  K  H  I  P  S  L  Q  Y  W  E  D  V  L  Y  L  T  E  P  E  K  W  S  P  N  A  M  Y  Q  A  T  R  I  F  A  S  N  L  G  V  K  K  A  E  R  F  Y  K  L  V  L  L  P  R  V  R  D  D  I  R  K  N  K  R  L  H  F  A  L  Y  Q  S  L  K  K  S  L  Y  K  P  A  A  F  N  K  G  I  L  F  P  L  C  E  :  S  R  T  C  T  L  R  E  A  V  I  F  G  S  V  I  E  K  V  S  I  P  H  L  H  A  S :   V  A  L  L  K  L  A  E  M  E  Y  C  G  T  T  S :   Y  F  I  K  L  L  I  E  K  K  Y  A  L  P  Y  R  V  L  D  A  M  V  A  H  F  M  N  F  F  D  E  T  R  V  M  P  V  I  W  H  L  S  L  L  V  F  V  Q  R :   Y  K  T  E  M  R  K  E  D  K  A  N  I  R  A  L  V  E  R  Q  R  H  R  L  :  I  T  P  D  I  L  R  E  I  E  K  S  R  S  R  G  E  K  E  D  D  P  M  L  I  D  I  L  S  L  M  V  *  I  F  L  L  H  I  C  L  S  L  I  W  S  V  Y  T  V  S  P  A  L  A  I  T  *  S  G  S  *  C  F  K  N  C  *  *  N  K  K  S  L  N  L  S  C  Q  F  M  L  K  F  C  Y  F  L  *  V  R  A  Y  L  H  R  W  N  R  L  S  C  T  T  T  I  F  C  L  *  V  L  C  I  V  E  V  C  C  F  L  Q  D  G  *  F  L  N  C  L  F  P  V  V  L  *  R  L  K  *  N  S  R  C  S  Y  D  L  F  M  L  L  L  I  F  F  L  L  H  H  W  K  I  Y  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98968" stop="99099"/>
                    <exon start="99195" stop="99401"/>
                    <exon start="99853" stop="99988"/>
                    <exon start="100181" stop="100229"/>
                    <exon start="100310" stop="100637"/>
                    <exon start="101434" stop="101513"/>
                    <exon start="101774" stop="101821"/>
                    <exon start="102235" stop="102381"/>
                    <exon start="102985" stop="103057"/>
                    <exon start="103149" stop="103247"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1296</number_coding_nucleotides>
                  <number_encoded_amino_acids>432</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKAKMGKKRERLTNPEPFLDDDSKSKASSKKRSKAPKSHQQQQQVISSSISSKILKEALLQQKEVDEEETRERNPNAIVFSEDVATRAVEEDDDDIDNFSGFQETQSQFGDLEDEVDKLLLEDEKLLEAFYSTQNRPERTLGQILIEKSKEQNAQVSSVQPMPKLDESIIELYKGVGKHLSKYNSGKMPKAFKHIPSLQYWEDVLYLTEPEKWSPNAMYQATRIFASNLGVKKAERFYKLVLLPRVRDDIRKNKRLHFALYQSLKKSLYKPAAFNKGILFPLCESRTCTLREAVIFGSVIEKVSIPHLHASVALLKLAEMEYCGTTSYFIKLLIEKKYALPYRVLDAMVAHFMNFFDETRVMPVIWHLSLLVFVQRYKTEMRKEDKANIRALVERQRHRLITPDILREIEKSRSRGEKEDDPMLIDILSLMV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="123826" PGL_stop="124741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123826" e_stop="124741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="123826" e_stop="124741" e_length="916"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123826" stop="124337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123870" stop="124623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124244" stop="124741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555946" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTGATATACAAGAAAACAGAGAGTTACAGGAACATTGTATTGTATTCCTATAATAAGGTATATATACTCTCTCATGCACAATCAAATGTGAAAGAATCACCAGAAAAAAACCAGCTGAGCTCCCATTTTCTAACTACATCCAAGCTACTAACTGGTTCTCTGAGAATCTCTCACACTATATAAACAAAGAAAAAAGATGTAGAAATAATCAAAGAAACGAACTCCATTAAAGAGGAATATTCCGGGGACGTATATTCTAAACCATCCCTCTGGTAAATTTTCCTCAGTAATAGTCACAATCATGCCTGATTTGCCAAATCATTGGCGTTTATGAATGTTCCATGAAATCCATAAGGAACTCTTGATGGAAGCTTCACAGTTGCCTCCAACTTCAAACTCATTGCGTTAACAATTTGCAGTTCTGATTTCCATTCTTTCTCATCGTGAACGAAAGCTAAAATATAACCATCGTCTTCTTCCTTGCTGTTGGGGTCTCTTGGTAAAAAAAGAGGTTCCCCACCATATTTGTTGTCACCATAAATGAATTTCTCAACTTCACCGGTGAACAGGTTTACTTTTGCAAAACCAGAAACTTTTGGCCATGGTTCAGCGATAGCCAAATAAGCATACTCTGTTTTCCTTCCGAGTTTGTTTCGGTTCACCATTCCAGCTTCTAAATTCACTTGTTCATCCGGGTTTTCGATTATGGATTTTCTTGTTGATTTCCCTGTTTTCAAATTGAGACGGATTTCGGATAAAACACTCTTTAGCCCTTCATCACATTCATTGAAAATGGAGTCTGGTGGTGTCATACATGAACCAATTACAACGATTTCATCTGTTTCTGCTTCTTCCCAAGCATTCCAGAGGTGGAAACAGAAACAATCAGGTACTTCAACCCATTTCAAATC</gDNA_template>
            <first_frame> F  F  *  Y  T  R  K  Q  R  V  T  G  T  L  Y  C  I  P  I  I  R  Y  I  Y  S  L  M  H  N  Q  M  *  K  N  H  Q  K  K  T  S  *  A  P  I  F  *  L  H  P  S  Y  *  L  V  L  *  E  S  L  T  L  Y  K  Q  R  K  K  M  *  K  *  S  K  K  R  T  P  L  K  R  N  I  P  G  T  Y  I  L  N  H  P  S  G  K  F  S  S  V  I  V  T  I  M  P  D  L  P  N  H  W  R  L  *  M  F  H  E  I  H  K  E  L  L  M  E  A  S  Q  L  P  P  T  S  N  S  L  R  *  Q  F  A  V  L  I  S  I  L  S  H  R  E  R  K  L  K  Y  N  H  R  L  L  P  C  C  W  G  L  L  V  K  K  E  V  P  H  H  I  C  C  H  H  K  *  I  S  Q  L  H  R  *  T  G  L  L  L  Q  N  Q  K  L  L  A  M  V  Q  R  *  P  N  K  H  T  L  F  S  F  R  V  C  F  G  S  P  F  Q  L  L  N  S  L  V  H  P  G  F  R  L  W  I  F  L  L  I  S  L  F  S  N  *  D  G  F  R  I  K  H  S  L  A  L  H  H  I  H  *  K  W  S  L  V  V  S  Y  M  N  Q  L  Q  R  F  H  L  F  L  L  L  P  K  H  S  R  G  G  N  R  N  N  Q  V  L  Q  P  I  S  N  </first_frame>
            <second_frame>  F  F  D  I  Q  E  N  R  E  L  Q  E  H  C  I  V  F  L  *  *  G  I  Y  T  L  S  C  T  I  K  C  E  R  I  T  R  K  K  P  A  E  L  P  F  S  N  Y  I  Q  A  T  N  W  F  S  E  N  L  S  H  Y  I  N  K  E  K  R  C  R  N  N  Q  R  N  E  L  H  *  R  G  I  F  R  G  R  I  F  *  T  I  P  L  V  N  F  P  Q  *  *  S  Q  S  C  L  I  C  Q  I  I  G  V  Y  E  C  S  M  K  S  I  R  N  S  *  W  K  L  H  S  C  L  Q  L  Q  T  H  C  V  N  N  L  Q  F  *  F  P  F  F  L  I  V  N  E  S  *  N  I  T  I  V  F  F  L  A  V  G  V  S  W  *  K  K  R  F  P  T  I  F  V  V  T  I  N  E  F  L  N  F  T  G  E  Q  V  Y  F  C  K  T  R  N  F  W  P  W  F  S  D  S  Q  I  S  I  L  C  F  P  S  E  F  V  S  V  H  H  S  S  F  *  I  H  L  F  I  R  V  F  D  Y  G  F  S  C  *  F  P  C  F  Q  I  E  T  D  F  G  *  N  T  L  *  P  F  I  T  F  I  E  N  G  V  W  W  C  H  T  *  T  N  Y  N  D  F  I  C  F  C  F  F  P  S  I  P  E  V  E  T  E  T  I  R  Y  F  N  P  F  Q  I </second_frame>
            <third_frame>   F  L  I  Y  K  K  T  E  S  Y  R  N  I  V  L  Y  S  Y  N  K  V  Y  I  L  S  H  A  Q  S  N  V  K  E  S  P  E  K  N  Q  L  S  S  H  F  L  T  T  S  K  L  L  T  G  S  L  R  I  S  H  T  I  *  T  K  K  K  D  V  E  I  I  K  E  T  N  S  I  K  E  E  Y  S  G  D  V  Y  S  K  P  S  L  W  *  I  F  L  S  N  S  H  N  H  A  *  F  A  K  S  L  A  F  M  N  V  P  *  N  P  *  G  T  L  D  G  S  F  T  V  A  S  N  F  K  L  I  A  L  T  I  C  S  S  D  F  H  S  F  S  S  *  T  K  A  K  I  *  P  S  S  S  S  L  L  L  G  S  L  G  K  K  R  G  S  P  P  Y  L  L  S  P  *  M  N  F  S  T  S  P  V  N  R  F  T  F  A  K  P  E  T  F  G  H  G  S  A  I  A  K  *  A  Y  S  V  F  L  P  S  L  F  R  F  T  I  P  A  S  K  F  T  C  S  S  G  F  S  I  M  D  F  L  V  D  F  P  V  F  K  L  R  R  I  S  D  K  T  L  F  S  P  S  S  H  S  L  K  M  E  S  G  G  V  I  H  E  P  I  T  T  I  S  S  V  S  A  S  S  Q  A  F  Q  R  W  K  Q  K  Q  S  G  T  S  T  H  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124455" stop="124739"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYSVFLPSLFRFTIPASKFTCSSGFSIMDFLVDFPVFKLRRISDKTLFSPSSHSLKMESGGVIHEPITTISSVSASSQAFQRWKQKQSGTSTHFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="126025" PGL_stop="123855"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126025" e_stop="123855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="126025" e_stop="123855" e_length="2171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126025" stop="123855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125720" stop="125095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125710" stop="125135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125707" stop="125201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125693" stop="125094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125501" stop="124987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125453" stop="125000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125249" stop="124637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125249" stop="124824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125192" stop="124434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125192" stop="124531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125104" stop="124586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125039" stop="124438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125039" stop="124475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125039" stop="124493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125035" stop="124242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125012" stop="124519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124944" stop="124410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124921" stop="124433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124590" stop="123881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAAAAAAATCCCCTTTCCACAACACCAAATTGTACTATTAACATCCAAAAAAAAGAAAAAGAAAATAGGTAGCTATGGCAACTACTACTTCACATGCCACAAATACATGGATTAAGACTAAGTTGTCAATGCCATCATCAAAGGAGTTTGGTTTTGCATCAAACTCTATTTCTCTACTCAAAAATCAACATAATAGGCAAAGTCTCAACATTAATTCCTCTCTTCAAGCTCCACCTATACTTCATTTTCCTAAACAATCTTCAAATTATCAAACACCAAAGAATAATACAATTTCACACCCAAAACAAGAAAACAACAACTCCTCTTCTTCTTCAACTTCCAAGTGGAATTTAGTGCAGAAAGCAGCAGCAATGGCTTTAGATGCTGTAGAAAGTGCTTTAACTAAACATGAACTTGAACACCCTTTGCCGAAAACAGCCGACCCACGAGTCCAGATTTCTGGGAATTTTGCTCCGGTACCGGAAAATCCAGTCTGTCAATCTCTTCCGGTCACCGGAAAAATACCCAAATGTGTTCAAGGCGTTTACGTTCGAAACGGAGCTAACCCTCTTTTTGAACCAACCGCCGGACACCATTTCTTCGACGGCGACGGTATGGTTCACGCCGTTCAATTCAAAAATGGGTCGGCTAGTTACGCTTGCCGTTTCACTGAAACAGAGAGGCTTGTTCAAGAAAAAGCTTTGGGTCGCCCTGTTTTCCCTAAAGCCATTGGTGAATTACATGGTCACTCTGGAATTGCAAGGCTTATGCTGTTTTACGCTCGTGGGCTCTTCGGACTTGTTGATCACAGTAAAGGAACTGGTGTTGCAAACGCCGGTTTAGTCTATTTCAATAACCGATTACTTGCTATGTCTGAAGATGATTTGCCTTACCATGTAAAGGTAACACCCACCGGCGATCTTAAAACAGAGGGTCGATTCGATTTCGACGGCCAGCTAAAATCCACCATGATAGCTCACCCAAAGCTCGACCCAGTTTCCGGTGAGCTATTTGCTCTTAGCTACGATGTGATTCAGAAGCCATACCTCAAGTACTTCAGATTTTCAAAAAATGGGGAAAAATCAAATGATGTTGAAATTCCAGTTGAAGACCCAACAATGATGCATGATTTCGCAATTACTGAGAACTTCGTCGTCATTCCTGATCAACAAGTCGTTTTCAAGATGTCTGAAATGATCCGTGGAGGTTCACCGGTGGTTTACGACAAGAACAAAGTTTCCCGATTTGGTATTCTGGATAAGTACGCGAAAGATGGGTCTGATTTGAAATGGGTTGAAGTACCTGATTGTTTCTGTTTCCACCTCTGGAATGCTTGGGAAGAAGCAGAAACAGATGAAATCGTTGTAATTGGTTCATGTATGACACCACCAGACTCCATTTTCAATGAATGTGATGAAGGGCTAAAGAGTGTTTTATCCGAAATCCGTCTCAATTTGAAAACAGGGAAATCAACAAGAAAATCCATAATCGAAAACCCGGATGAACAAGTGAATTTAGAAGCTGGAATGGTGAACCGAAACAAACTCGGAAGGAAAACAGAGTATGCTTATTTGGCTATCGCTGAACCATGGCCAAAAGTTTCTGGTTTTGCAAAAGTAAACCTGTTCACCGGTGAAGTTGAGAAATTCATTTATGGTGACAACAAATATGGTGGGGAACCTCTTTTTTTACCAAGAGACCCCAACAGCAAGGAAGAAGACGATGGTTATATTTTAGCTTTCGTTCACGATGAGAAAGAATGGAAATCAGAACTGCAAATTGTTAACGCAATGAGTTTGAAGTTGGAGGCAACTGTGAAGCTTCCATCAAGAGTTCCTTATGGATTTCATGGAACATTCATAAACGCCAATGATTTGGCAAATCAGGCATGATTGTGACTATTACTGAGGAAAATTTACCAGAGGGATGGTTTAGAATATACGTCCCCGGAATATTCCTCTTTAATGGAGTTCGTTTCTTTGATTATTTCTACATCTTTTTTCTTTGTTTATATAGTGTGAGAGATTCTCAGAGAACCAGTTAGTAGCTTGGATGTAGTTAGAAAATGGGAGCTCAGCTGGTTTTTTTCTGGTGATTCTTTCACATTTGATTGTGCATGAGAGAGTATATATACCTTATTATAGGAATACAATACAATGTTCCTGTA</gDNA_template>
            <first_frame> K  K  K  K  S  P  F  H  N  T  K  L  Y  Y  *  H  P  K  K  R  K  R  K  *  V  A  M  A  T  T  T  S  H  A  T  N  T  W  I  K  T  K  L  S  M  P  S  S  K  E  F  G  F  A  S  N  S  I  S  L  L  K  N  Q  H  N  R  Q  S  L  N  I  N  S  S  L  Q  A  P  P  I  L  H  F  P  K  Q  S  S  N  Y  Q  T  P  K  N  N  T  I  S  H  P  K  Q  E  N  N  N  S  S  S  S  S  T  S  K  W  N  L  V  Q  K  A  A  A  M  A  L  D  A  V  E  S  A  L  T  K  H  E  L  E  H  P  L  P  K  T  A  D  P  R  V  Q  I  S  G  N  F  A  P  V  P  E  N  P  V  C  Q  S  L  P  V  T  G  K  I  P  K  C  V  Q  G  V  Y  V  R  N  G  A  N  P  L  F  E  P  T  A  G  H  H  F  F  D  G  D  G  M  V  H  A  V  Q  F  K  N  G  S  A  S  Y  A  C  R  F  T  E  T  E  R  L  V  Q  E  K  A  L  G  R  P  V  F  P  K  A  I  G  E  L  H  G  H  S  G  I  A  R  L  M  L  F  Y  A  R  G  L  F  G  L  V  D  H  S  K  G  T  G  V  A  N  A  G  L  V  Y  F  N  N  R  L  L  A  M  S  E  D  D  L  P  Y  H  V  K  V  T  P  T  G  D  L  K  T  E  G  R  F  D  F  D  G  Q  L  K  S  T  M  I  A  H  P  K  L  D  P  V  S  G  E  L  F  A  L  S  Y  D  V  I  Q  K  P  Y  L  K  Y  F  R  F  S  K  N  G  E  K  S  N  D  V  E  I  P  V  E  D  P  T  M  M  H  D  F  A  I  T  E  N  F  V  V  I  P  D  Q  Q  V  V  F  K  M  S  E  M  I  R  G  G  S  P  V  V  Y  D  K  N  K  V  S  R  F  G  I  L  D  K  Y  A  K  D  G  S  D  L  K  W  V  E  V  P  D  C  F  C  F  H  L  W  N  A  W  E  E  A  E  T  D  E  I  V  V  I  G  S  C  M  T  P  P  D  S  I  F  N  E  C  D  E  G  L  K  S  V  L  S  E  I  R  L  N  L  K  T  G  K  S  T  R  K  S  I  I  E  N  P  D  E  Q  V  N  L  E  A  G  M  V  N  R  N  K  L  G  R  K  T  E  Y  A  Y  L  A  I  A  E  P  W  P  K  V  S  G  F  A  K  V  N  L  F  T  G  E  V  E  K  F  I  Y  G  D  N  K  Y  G  G  E  P  L  F  L  P  R  D  P  N  S  K  E  E  D  D  G  Y  I  L  A  F  V  H  D  E  K  E  W  K  S  E  L  Q  I  V  N  A  M  S  L  K  L  E  A  T  V  K  L  P  S  R  V  P  Y  G  F  H  G  T  F  I  N  A  N  D  L  A  N  Q  A  *  L  *  L  L  L  R  K  I  Y  Q  R  D  G  L  E  Y  T  S  P  E  Y  S  S  L  M  E  F  V  S  L  I  I  S  T  S  F  F  F  V  Y  I  V  *  E  I  L  R  E  P  V  S  S  L  D  V  V  R  K  W  E  L  S  W  F  F  S  G  D  S  F  T  F  D  C  A  *  E  S  I  Y  T  L  L  *  E  Y  N  T  M  F  L   </first_frame>
            <second_frame>  K  K  K  N  P  L  S  T  T  P  N  C  T  I  N  I  Q  K  K  E  K  E  N  R  *  L  W  Q  L  L  L  H  M  P  Q  I  H  G  L  R  L  S  C  Q  C  H  H  Q  R  S  L  V  L  H  Q  T  L  F  L  Y  S  K  I  N  I  I  G  K  V  S  T  L  I  P  L  F  K  L  H  L  Y  F  I  F  L  N  N  L  Q  I  I  K  H  Q  R  I  I  Q  F  H  T  Q  N  K  K  T  T  T  P  L  L  L  Q  L  P  S  G  I  *  C  R  K  Q  Q  Q  W  L  *  M  L  *  K  V  L  *  L  N  M  N  L  N  T  L  C  R  K  Q  P  T  H  E  S  R  F  L  G  I  L  L  R  Y  R  K  I  Q  S  V  N  L  F  R  S  P  E  K  Y  P  N  V  F  K  A  F  T  F  E  T  E  L  T  L  F  L  N  Q  P  P  D  T  I  S  S  T  A  T  V  W  F  T  P  F  N  S  K  M  G  R  L  V  T  L  A  V  S  L  K  Q  R  G  L  F  K  K  K  L  W  V  A  L  F  S  L  K  P  L  V  N  Y  M  V  T  L  E  L  Q  G  L  C  C  F  T  L  V  G  S  S  D  L  L  I  T  V  K  E  L  V  L  Q  T  P  V  *  S  I  S  I  T  D  Y  L  L  C  L  K  M  I  C  L  T  M  *  R  *  H  P  P  A  I  L  K  Q  R  V  D  S  I  S  T  A  S  *  N  P  P  *  *  L  T  Q  S  S  T  Q  F  P  V  S  Y  L  L  L  A  T  M  *  F  R  S  H  T  S  S  T  S  D  F  Q  K  M  G  K  N  Q  M  M  L  K  F  Q  L  K  T  Q  Q  *  C  M  I  S  Q  L  L  R  T  S  S  S  F  L  I  N  K  S  F  S  R  C  L  K  *  S  V  E  V  H  R  W  F  T  T  R  T  K  F  P  D  L  V  F  W  I  S  T  R  K  M  G  L  I  *  N  G  L  K  Y  L  I  V  S  V  S  T  S  G  M  L  G  K  K  Q  K  Q  M  K  S  L  *  L  V  H  V  *  H  H  Q  T  P  F  S  M  N  V  M  K  G  *  R  V  F  Y  P  K  S  V  S  I  *  K  Q  G  N  Q  Q  E  N  P  *  S  K  T  R  M  N  K  *  I  *  K  L  E  W  *  T  E  T  N  S  E  G  K  Q  S  M  L  I  W  L  S  L  N  H  G  Q  K  F  L  V  L  Q  K  *  T  C  S  P  V  K  L  R  N  S  F  M  V  T  T  N  M  V  G  N  L  F  F  Y  Q  E  T  P  T  A  R  K  K  T  M  V  I  F  *  L  S  F  T  M  R  K  N  G  N  Q  N  C  K  L  L  T  Q  *  V  *  S  W  R  Q  L  *  S  F  H  Q  E  F  L  M  D  F  M  E  H  S  *  T  P  M  I  W  Q  I  R  H  D  C  D  Y  Y  *  G  K  F  T  R  G  M  V  *  N  I  R  P  R  N  I  P  L  *  W  S  S  F  L  *  L  F  L  H  L  F  S  L  F  I  *  C  E  R  F  S  E  N  Q  L  V  A  W  M  *  L  E  N  G  S  S  A  G  F  F  L  V  I  L  S  H  L  I  V  H  E  R  V  Y  I  P  Y  Y  R  N  T  I  Q  C  S  C  </second_frame>
            <third_frame>   K  K  K  I  P  F  P  Q  H  Q  I  V  L  L  T  S  K  K  K  K  K  K  I  G  S  Y  G  N  Y  Y  F  T  C  H  K  Y  M  D  *  D  *  V  V  N  A  I  I  K  G  V  W  F  C  I  K  L  Y  F  S  T  Q  K  S  T  *  *  A  K  S  Q  H  *  F  L  S  S  S  S  T  Y  T  S  F  S  *  T  I  F  K  L  S  N  T  K  E  *  Y  N  F  T  P  K  T  R  K  Q  Q  L  L  F  F  F  N  F  Q  V  E  F  S  A  E  S  S  S  N  G  F  R  C  C  R  K  C  F  N  *  T  *  T  *  T  P  F  A  E  N  S  R  P  T  S  P  D  F  W  E  F  C  S  G  T  G  K  S  S  L  S  I  S  S  G  H  R  K  N  T  Q  M  C  S  R  R  L  R  S  K  R  S  *  P  S  F  *  T  N  R  R  T  P  F  L  R  R  R  R  Y  G  S  R  R  S  I  Q  K  W  V  G  *  L  R  L  P  F  H  *  N  R  E  A  C  S  R  K  S  F  G  S  P  C  F  P  *  S  H  W  *  I  T  W  S  L  W  N  C  K  A  Y  A  V  L  R  S  W  A  L  R  T  C  *  S  Q  *  R  N  W  C  C  K  R  R  F  S  L  F  Q  *  P  I  T  C  Y  V  *  R  *  F  A  L  P  C  K  G  N  T  H  R  R  S  *  N  R  G  S  I  R  F  R  R  P  A  K  I  H  H  D  S  S  P  K  A  R  P  S  F  R  *  A  I  C  S  *  L  R  C  D  S  E  A  I  P  Q  V  L  Q  I  F  K  K  W  G  K  I  K  *  C  *  N  S  S  *  R  P  N  N  D  A  *  F  R  N  Y  *  E  L  R  R  H  S  *  S  T  S  R  F  Q  D  V  *  N  D  P  W  R  F  T  G  G  L  R  Q  E  Q  S  F  P  I  W  Y  S  G  *  V  R  E  R  W  V  *  F  E  M  G  *  S  T  *  L  F  L  F  P  P  L  E  C  L  G  R  S  R  N  R  *  N  R  C  N  W  F  M  Y  D  T  T  R  L  H  F  Q  *  M  *  *  R  A  K  E  C  F  I  R  N  P  S  Q  F  E  N  R  E  I  N  K  K  I  H  N  R  K  P  G  *  T  S  E  F  R  S  W  N  G  E  P  K  Q  T  R  K  E  N  R  V  C  L  F  G  Y  R  *  T  M  A  K  S  F  W  F  C  K  S  K  P  V  H  R  *  S  *  E  I  H  L  W  *  Q  Q  I  W  W  G  T  S  F  F  T  K  R  P  Q  Q  Q  G  R  R  R  W  L  Y  F  S  F  R  S  R  *  E  R  M  E  I  R  T  A  N  C  *  R  N  E  F  E  V  G  G  N  C  E  A  S  I  K  S  S  L  W  I  S  W  N  I  H  K  R  Q  *  F  G  K  S  G  M  I  V  T  I  T  E  E  N  L  P  E  G  W  F  R  I  Y  V  P  G  I  F  L  F  N  G  V  R  F  F  D  Y  F  Y  I  F  F  L  C  L  Y  S  V  R  D  S  Q  R  T  S  *  *  L  G  C  S  *  K  M  G  A  Q  L  V  F  F  W  *  F  F  H  I  *  L  C  M  R  E  Y  I  Y  L  I  I  G  I  Q  Y  N  V  P  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0220H02.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125953" stop="124130"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1821</number_coding_nucleotides>
                  <number_encoded_amino_acids>607</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAMATTTSHATNTWIKTKLSMPSSKEFGFASNSISLLKNQHNRQSLNINSSLQAPPILHFPKQSSNYQTPKNNTISHPKQENNNSSSSSTSKWNLVQKAAAMALDAVESALTKHELEHPLPKTADPRVQISGNFAPVPENPVCQSLPVTGKIPKCVQGVYVRNGANPLFEPTAGHHFFDGDGMVHAVQFKNGSASYACRFTETERLVQEKALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDHSKGTGVANAGLVYFNNRLLAMSEDDLPYHVKVTPTGDLKTEGRFDFDGQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSKNGEKSNDVEIPVEDPTMMHDFAITENFVVIPDQQVVFKMSEMIRGGSPVVYDKNKVSRFGILDKYAKDGSDLKWVEVPDCFCFHLWNAWEEAETDEIVVIGSCMTPPDSIFNECDEGLKSVLSEIRLNLKTGKSTRKSIIENPDEQVNLEAGMVNRNKLGRKTEYAYLAIAEPWPKVSGFAKVNLFTGEVEKFIYGDNKYGGEPLFLPRDPNSKEEDDGYILAFVHDEKEWKSELQIVNAMSLKLEATVKLPSRVPYGFHGTFINANDLANQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 524 chains have been computed
$ 
$ memory statistics:
$ 1241824 bytes spliced alignments in total
$ 316 spliced alignments have been stored
$ 3929 bytes was the average size of a spliced alignment
$ 40480 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 2024 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 554 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 02:45:20
-->
