<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 02:47:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344360" ref_strand="+" ref_description="SGN-U344360        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ccgtggtttcctccggaccacttaaacagatttcttgttttacacaaacttaacataaccttggtcaacagttagaggggtttataacactaattctgaccatgtgtagttgtctggatgaaacctcatggagtcgagggctgggaacacaaataggtgtaagtatgagtgtccatttggctattcaggttgacctattacgttacaaaaagggagcatctttggtccatcctaatgaacaccctaaataatactccctctgtcccaatttatgtgacttacttttctttttagtcaatcccaaaaagaatgacacatttttatattatgcaagaattgactataaaatgtctattttacccttactgaaatgatttacagcctcacaaatttctatcattcattttggaccataagttttacaggtcttcctttctttcttaaacttcgtgctgagccaaactatctcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0224G23.1" temp_strand="+" temp_description="C07HBa0224G23.1  AC210362.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0224G23 upload_account_name:france">
        <position start="33058" stop="34128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33357" g_stop="33828" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0224G23.1" gen_strand="+" ref_id="SGN-U344360" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0224G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33357" e_stop="33828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGGTTTCATCCGGA-CACTTAAACAGATTTCTTGTTTTACACAAACTTAACATAACCTTGGTCAACAGTTAGAGGGGTTTATAACACTAATTCTGACCATGTGTAGTTGTCTGGATGAAACCTCATGGAGTCGAGGGCTGGGAACACAAATAGGTGTAAGTATGAGTGTCCATTTGGCTATTCAGGTTGACCTATTAGGTTACAAAAAGGGAGCATCTTTGGTCCATCCTAATGAACACCCTAAATAATACTCCCTCTGTCCCAATTTATGTGACTTACTTTTCTTTTTAGTCAATCCCAAAAAGAATGACACATTTTTATATTATGCAAGAATTGACTATAAAATGTCTATTTTACCCTTAATGAAATGATTTACAGCCTCACAAATTTCTATCATTCATTTTGGACCATAAGTTTTAAAGGTCTTCCTTTCTTTCTTAAACTTCGTGCTGAGTCAAACTATCTCACAT</genome_strand>
        <mrna_strand>CCGTGGTTTCCTCCGGACCACTTAAACAGATTTCTTGTTTTACACAAACTTAACATAACCTTGGTCAACAGTTAGAGGGGTTTATAACACTAATTCTGACCATGTGTAGTTGTCTGGATGAAACCTCATGGAGTCGAGGGCTGGGAACACAAATAGGTGTAAGTATGAGTGTCCATTTGGCTATTCAGGTTGACCTATTACGTTACAAAAAGGGAGCATCTTTGGTCCATCCTAATGAACACCCTAAATAATACTCCCTCTGTCCCAATTTATGTGACTTACTTTTCTTTTTAGTCAATCCCAAAAAGAATGACACATTTTTATATTATGCAAGAATTGACTATAAAATGTCTATTTTACCCTTACTGAAATGATTTACAGCCTCACAAATTTCTATCATTCATTTTGGACCATAAGTTTTACAGGTCTTCCTTTCTTTCTTAAACTTCGTGCTGAGCCAAACTATCTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319709" ref_strand="+" ref_description="SGN-U319709        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus. | chr1:27375933-27380246 FORWARD | Aliases: F28P22.10, F28P22_10, CKL2(evalue: 1e-08, score=57.4) genbank/nr: gi|52077494|dbj|BAD45138.1| protein kinase ADK1-like [Oryza sativa (japonica cultivar-group)] (evalue: 8e-12, score=74.3)">
      <seq>agcagatccctctcggaggagaagtcctgtgccaccactgattacttctggaagtttatccaggcagaaaagtcctattggaaatgattccacgagcaaagaggctatgataaattttccctgagatgctagccccttggctaaagatgtatatcagccaaggggaagtaaataataatggtgttttcaaagttgtcagagttgaagcttacttttgtgctacaacacaagtctggaaccctatcccctcagaaaagtcctattggaaatcataccagcaaagaggctatgttgtcaagctccagttttctgggaagacctagtgggtctctgaggcaaggtctagtctctggcagccgtgagactttcaccatgggaaatgactctgaccctacacattctcgcacgcctgaggcaagtccagcaactatgcacaaaatatcaggtggacatagaagctctctacttggtggatcatctgatcctaggtatgcctcatctagcaagaatacttctgggataaagaactatgaatcggcgctcaaaggaattgagactctacattttgatgatgaagagagggctcattgattgcaaatcctttcacatgtaaatttttacttgtttggtagacttcagatatagattgaggccctgaaagcttatttttgtttgaattcgtgggttggaaactagtgaatgagcagttgttattcactctgccaaaagatctacagcaaataaaaaaatccagatggtgcaaatgcaggaggtgtgaggttctgtcaatactaactccaacatggtgcatgactctctatagatgtaggcaatgcatgcagcattgtctataatcatttagttctgtccaactctaggggatcagttaaactgtatattaaatttccccatacttttaatacttttcaggttagtagatgtggttcatttaaatacagttctcaaatattagtgttctggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0224G23.1" temp_strand="-" temp_description="C07HBa0224G23.1  AC210362.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0224G23 upload_account_name:france">
        <position start="42921" stop="41185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42621" g_stop="42513" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42512" i_stop="42349" i_length="164">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42348" g_stop="41477" g_length="872"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="992" r_length="883" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0224G23.1" gen_strand="-" ref_id="SGN-U319709" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>981</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0224G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42621" e_stop="42513"/>
          <exon e_start="42348" e_stop="41477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGATCCCTCTCGGAGGAGAAGTCCTGTGCCACCACTGATTACTTCTGGAAGTTTATCCAGGCAGAAAAGTCCTATTGGAAATGATTCCACGAGCAAAGAGGCTATGGTGAGTTTGAGTTGGATAAATAGAACTTCCATAGGAGAGTAACTTTCAAATGCCAGGGGCCCTGAAGGCCAATAACAAGAGATTTGTGATGCTTTCCATAGTTAATGACTTGTAAGGCTGTTACAATGGAATTTTCTTGATCCCAAAGTCTTCCATTATTGCAGATAAATTTTCCCTGAGATGCTAGCCCCTTGGCTAAAGATGTATATCAGCCAAGGGGAAGTAAATAATAATGGTGTTTTCAAAGTTGTCAGAGTTGAAGCTTACTTTTGTGCTACAACACAAGTCTTTAACCCTTTCCCCTC----CAGT--T-TTCTGAATCATACCA--ATATTTGC-A-GTTGTCAAGCTCCAGTTTTCTGGGAAGACCTAGTGGGTCTCTGAGGCAAGGTCTAGTCTCTGGCAGCCGTGAGACTTTCACCATGGGAAATGACTCTGACCCTACACATTCTCGCACGCCTGAGGCAAGTCCAGCAACTATGCACAAAATATCAGGTGGACATAGAAGCTCTCTACTTGGTGGATCATCTGATCCTAGGTATGCCTCATCTAGCAAGAATACTTCTGGGATAAAGAACTATGAATCGGCGCTCAAAGGAATTGAGACTCTACATTTTGATGATGAAGAGAGGGCTCATTGATTGCAAATCCTTTCACATGTAAATTTTTACTTGTTTGGTAGACTTCAGATATAGATTGAGGCCCTGAAAGCTTATTTTTGTTTGAATTCGTGGGTTGGAAACTAGTGAATGAGCAGTTGTTATTCACTCTGCCAAAAGATCTACAGCAAATAAAAAAATCCAGATGGTGCAAATGCAGGAGGTGTGAGGTTCTGTCAATACTAACTCCAACATGGTGCATGACTCTCTATAGATGTAGGCAATGCATGCAGCATTGTCTATAATCATTTAGTTCTGTCCAACTCTAGGGGATCAGTTAAACTGTATATTAAATTTCCCCATACTTTTAATACTTTTCAGGTTAGTAGATGTGGTTCATTTAAATACAGTTCTCAAATATTAGTGTTCTGGTAATTCATGTG</genome_strand>
        <mrna_strand>AGCAGATCCCTCTCGGAGGAGAAGTCCTGTGCCACCACTGATTACTTCTGGAAGTTTATCCAGGCAGAAAAGTCCTATTGGAAATGATTCCACGAGCAAAGAGGCTATG....................................................................................................................................................................ATAAATTTTCCCTGAGATGCTAGCCCCTTGGCTAAAGATGTATATCAGCCAAGGGGAAGTAAATAATAATGGTGTTTTCAAAGTTGTCAGAGTTGAAGCTTACTTTTGTGCTACAACACAAGTCTGGAACCCTATCCCCTCAGAAAAGTCCTATTGGAAATCATACCAGCAAAGAGGCTATGTTGTCAAGCTCCAGTTTTCTGGGAAGACCTAGTGGGTCTCTGAGGCAAGGTCTAGTCTCTGGCAGCCGTGAGACTTTCACCATGGGAAATGACTCTGACCCTACACATTCTCGCACGCCTGAGGCAAGTCCAGCAACTATGCACAAAATATCAGGTGGACATAGAAGCTCTCTACTTGGTGGATCATCTGATCCTAGGTATGCCTCATCTAGCAAGAATACTTCTGGGATAAAGAACTATGAATCGGCGCTCAAAGGAATTGAGACTCTACATTTTGATGATGAAGAGAGGGCTCATTGATTGCAAATCCTTTCACATGTAAATTTTTACTTGTTTGGTAGACTTCAGATATAGATTGAGGCCCTGAAAGCTTATTTTTGTTTGAATTCGTGGGTTGGAAACTAGTGAATGAGCAGTTGTTATTCACTCTGCCAAAAGATCTACAGCAAATAAAAAAATCCAGATGGTGCAAATGCAGGAGGTGTGAGGTTCTGTCAATACTAACTCCAACATGGTGCATGACTCTCTATAGATGTAGGCAATGCATGCAGCATTGTCTATAATCATTTAGTTCTGTCCAACTCTAGGGGATCAGTTAAACTGTATATTAAATTTCCCCATACTTTTAATACTTTTCAGGTTAGTAGATGTGGTTCATTTAAATACAGTTCTCAAATATTAGTGTTCTGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319710" ref_strand="+" ref_description="SGN-U319710        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus. | chr1:27375933-27380246 FORWARD | Aliases: F28P22.10, F28P22_10, CKL2(evalue: 5e-125, score=444) genbank/nr: Protein(evalue: 1e-129, score=466)">
      <seq>ttttgcagcaggaagctttccctgaagacagttttaaggcgtgcaaatcaggtgtatgcaattgacttcggtctagccaagaagtatcgagatacttcatctcaccaacacattccttaccgtgagaacaaaaacttgctgatcaaatgataaatcgtgttgaatttgttcattctaaatcatttttgcatcgagatatcaagccagacaattttcttatgggcttgggaaggcgtgcaaatcaggtgtatgcaattgacttcggtctagccaagaagtatcgagatacttcatctcaccaacacattccttaccgtgagaacaaaaacttgacgggcactgcaagatatgcaagcatgaacactcacctcggtatcgagcaaagcaggagggatgatttggagtctcttggatttgttcttatgtacttcctccgaggaagtcttccttggcaagggctgaaagcaggaaataagaagcagaagtatgagaaaattagtgaaaagaaggtttcaacatctatcgaggctttatgtcgaggttatcctactgaatttgcttcatatttccattactgccgttctctgcgcttcgaggataaaccagattatgcttatctgaagagaatatttcgtgacctctttatccgcgaaggttttcagtttgattatgtttttgattggactatattaaagtatcagcaatcgcaaattgcagctcctccttcccgacctcttggtgctggtgctggaaccagctcaggcatgcctccagttattcccaaggcagaaagacaggcaggtgaagatgaaggaagacaatcagcagatccctctcggaggagaagtcctgtgccaccactgattacttctggaagtttatccaggcagaaaagtcctattggaaatgattccacgagcaaagaggctatgttgtcaagctccagttttctgggaagacctagtgggtctctgaggcaaggtctagtctctggcagccgtgagactttcaccatgggaaatgactctgaccctacacattctcgcacgcctgaggcaagtccagcaactatgcacaaaatatcaggtggacatagaagctctctacttggtggatcatctgatcctaggtatgcctcatctagcaagaatacttctgggataaagaactatgaatcggcgctcaaaggaattgagactctacattttgatgatgaagagagggctcattgattgcaaatcctttcacatgtaaatttttacttgtttggtagacttcagatatagattgaggccctgaaagcttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0224G23.1" temp_strand="-" temp_description="C07HBa0224G23.1  AC210362.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0224G23 upload_account_name:france">
        <position start="45377" stop="41502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45069" g_stop="45024" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="149" r_length="47" r_score="0.609"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45023" i_stop="44933" i_length="91">
            <donor d_prob="0.992" d_score="0.61"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44932" g_stop="44837" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="245" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44836" i_stop="44747" i_length="90">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44746" g_stop="44676" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="316" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44675" i_stop="43697" i_length="979">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43696" g_stop="43635" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="378" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43634" i_stop="43541" i_length="94">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43540" g_stop="43477" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="442" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43476" i_stop="43408" i_length="69">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43407" g_stop="43323" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="527" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43322" i_stop="43240" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43239" g_stop="43113" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="654" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43112" i_stop="43029" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.407" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43028" g_stop="42946" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="737" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="42945" i_stop="42875" i_length="71">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="42874" g_stop="42811" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="801" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="42810" i_stop="42644" i_length="167">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="42643" g_stop="42513" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="932" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="42512" i_stop="42178" i_length="335">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="42177" g_stop="41802" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="933" r_stop="1308" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0224G23.1" gen_strand="-" ref_id="SGN-U319710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1205</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0224G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45069" e_stop="45024"/>
          <exon e_start="44932" e_stop="44837"/>
          <exon e_start="44746" e_stop="44676"/>
          <exon e_start="43696" e_stop="43635"/>
          <exon e_start="43540" e_stop="43477"/>
          <exon e_start="43407" e_stop="43323"/>
          <exon e_start="43239" e_stop="43113"/>
          <exon e_start="43028" e_stop="42946"/>
          <exon e_start="42874" e_stop="42811"/>
          <exon e_start="42643" e_stop="42513"/>
          <exon e_start="42177" e_stop="41802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAA-GCTTTCCCTGAAGACAGTTTTAATGCTTGCTGATCAAATGGTTAGTTTTTTTCTCAGAGCCTCAAATTTTAGTGTCACTGTACCTTCTCAAAATGTGGAGGTTATATGTTTTTTTTTTGTAATTACTGCAGATAAATCGTGTTGAATTTGTTCATTCTAAATCATTTTTGCATCGAGATATCAAGCCAGACAATTTTCTTATGGGCTTGGGAAGGCGTGCAAATCAGGTCTCATTTTTAATACTATATCTTTACTAATGTCTCCACGTCTTTGTCGGATTTGTTGTTTCTTTAATATTTTGTTGACTTAAAATGCAGGTGTATGCAATTGACTTCGGTCTAGCCAAGAAGTATCGAGATACTTCATCTCACCAACACATTCCTTACCGGTAAGTTGATCCTGTTTGGTTAGATATCAAGTATTCACAGAACCTTTGTTTTTGTCTTCTTTTAACTATGAATATGTTCTACTGGAGTGTGTAGTAAATTATCTCTTGGGCCTTGTGGTACTTTCCCTTATTTTTAAAATATTTGACTTGGTTTTAGCATTGGAAGCAAACTTGAAAATTTGAGGTTGAAATGTATGTGTTATTGCTATAAAACACAATTTAAATATTTTATTTAATGACAAGAACTCAACTTAATTGACAAGCTGAAATTACACCATTATGCGAAATACTATATCCTAAAAAAAGAGGATGACATCATGATCCAATAAGCTTGTTTATTCAGATTTCTCTTTTTAAGTAAATCAAATTGCTTATTTCATAAGAAAATGAAATGTTTATTAGTGCTTGAACTAACACATTAAATAGTCCTATCGAGTTCAGTTGAGCATTATGTAAAGTTTATATGCTCGGGCTGTTTTGACATATTAATACAAAAATGCGAGATTCTGATTTGTATATAATGGGCATTAATTCAATATGAAATGTACGATGTGCTGCTTAATTAATGCTTGTGTTTCTACTGAAAACTCTTACATTATGTTTGGATGAAAGGATGGAGATGAGAGAAGACTAATGATTGTGCTAAATCTTGAAAAGTACAATATCTTCCCCTTCTCGGTCCCTTCTGTTTCTTAAAGAAAACCTGTGCTGTGAACATCTGGATAATCCAGCTTAGAATTGTAAGTTCAACAGTGGGCTGCTCACTATTCATTCAGAGTACCCTTAGAACCTTCTGGTGTGAATATCTTTGTATTCCAGCTTAGACCTGTAAGTACAACAAAGGGCTATTCACCATTCATTCAGATTGCTTTAGGATGTTTATTTAATGTTCATGCACATGCATTCAGGTATCTAGCATTTGTGAATCTGTCACCTCTGTTTGCTTATAAGATGTGTTCTGATTTTTTCCTCTGTTCAGTGAGAACAAAAACTTGACGGGCACTGCAAGATATGCAAGCATGAACACTCACCTCGGTATCGGTAAGTGTTCTGGTTCTTTAGGTTTGCTTGTTCACTCTTCTGACAGTTGAGTTCTGCTGTCGTTGAACTTAATGTACTTTTTTGGCAATTCCAGAGCAAAGCAGGAGGGATGATTTGGAGTCTCTTGGATTTGTTCTTATGTACTTCCTCCGAGGAAGGTGATTTTTTCTTCTACTCTGTCCTCTCTTGTTTTTCTTCTGCTTGTGTTTGACATCTATTTTTTGCAGTCTTCCTTGGCAAGGGCTGAAAGCAGGAAATAAGAAGCAGAAGTATGAGAAAATTAGTGAAAAGAAGGTTTCAACATCTATCGAGGTAATTTATTTACTAATATGGTGATTGGATTTTTTTATAAATATTTTTGTATGGAACCTAACTGCTAGTCTATGTTTCTGTAGGCTTTATGTCGAGGTTATCCTACTGAATTTGCTTCATATTTCCATTACTGCCGTTCTCTGCGCTTCGAGGATAAACCAGATTATGCTTATCTGAAGAGAATATTTCGTGACCTCTTTATCCGCGAAGGTAATAATAAGCCTTCAGAAGCTGTTTTTAGCTGTATGTAATATATAATCTAGCTTGTCGTTACAGTTCGGTTTCCCATTGCAGGTTTTCAGTTTGATTATGTTTTTGATTGGACTATATTAAAGTATCAGCAATCGCAAATTGCAGCTCCTCCTTCCCGACCTCTTGTAAGTTGTACAACTTCTCTTTTTTCTTCATAAGTGATAAACTTGTGTCTGACAAGGGTTGCTTTTTTTAGGGTGCTGGTGCTGGAACCAGCTCAGGCATGCCTCCAGTTATTCCCAAGGCAGAAAGACAGGCAGGTTAGTTTCTGGCCTCTATGCGAGCTCGATTTTCTAGACTTAAGCATATTGACTCTATTTTTGCCGTGTCTGACTTTTGCTAACTTTACTTAACTACTGGCCAGGTCTCCTTGTCTCTCTGTTTATAAAGGATCTCATTAATCATCTGCTTGTACTTTCTTTTGCAGGTGAAGATGAAGGAAGACAATCAGCAGATCCCTCTCGGAGGAGAAGTCCTGTGCCACCACTGATTACTTCTGGAAGTTTATCCAGGCAGAAAAGTCCTATTGGAAATGATTCCACGAGCAAAGAGGCTATGGTGAGTTTGAGTTGGATAAATAGAACTTCCATAGGAGAGTAACTTTCAAATGCCAGGGGCCCTGAAGGCCAATAACAAGAGATTTGTGATGCTTTCCATAGTTAATGACTTGTAAGGCTGTTACAATGGAATTTTCTTGATCCCAAAGTCTTCCATTATTGCAGATAAATTTTCCCTGAGATGCTAGCCCCTTGGCTAAAGATGTATATCAGCCAAGGGGAAGTAAATAATAATGGTGTTTTCAAAGTTGTCAGAGTTGAAGCTTACTTTTGTGCTACAACACAAGTCTTTAACCCTTTCCCCTCCAGTTTTCTGAATCATACCAATATTTGCAGTTGTCAAGCTCCAGTTTTCTGGGAAGACCTAGTGGGTCTCTGAGGCAAGGTCTAGTCTCTGGCAGCCGTGAGACTTTCACCATGGGAAATGACTCTGACCCTACACATTCTCGCACGCCTGAGGCAAGTCCAGCAACTATGCACAAAATATCAGGTGGACATAGAAGCTCTCTACTTGGTGGATCATCTGATCCTAGGTATGCCTCATCTAGCAAGAATACTTCTGGGATAAAGAACTATGAATCGGCGCTCAAAGGAATTGAGACTCTACATTTTGATGATGAAGAGAGGGCTCATTGATTGCAAATCCTTTCACATGTAAATTTTTACTTGTTTGGTAGACTTCAGATATAGATTGAGGCCCTGAAAGCTTATT</genome_strand>
        <mrna_strand>CACCAACACATTCCTTACCGTGAGAACAAAAACTTGCTGATCAAATG...........................................................................................ATAAATCGTGTTGAATTTGTTCATTCTAAATCATTTTTGCATCGAGATATCAAGCCAGACAATTTTCTTATGGGCTTGGGAAGGCGTGCAAATCAG..........................................................................................GTGTATGCAATTGACTTCGGTCTAGCCAAGAAGTATCGAGATACTTCATCTCACCAACACATTCCTTACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAACAAAAACTTGACGGGCACTGCAAGATATGCAAGCATGAACACTCACCTCGGTATCG..............................................................................................AGCAAAGCAGGAGGGATGATTTGGAGTCTCTTGGATTTGTTCTTATGTACTTCCTCCGAGGAAG.....................................................................TCTTCCTTGGCAAGGGCTGAAAGCAGGAAATAAGAAGCAGAAGTATGAGAAAATTAGTGAAAAGAAGGTTTCAACATCTATCGAG...................................................................................GCTTTATGTCGAGGTTATCCTACTGAATTTGCTTCATATTTCCATTACTGCCGTTCTCTGCGCTTCGAGGATAAACCAGATTATGCTTATCTGAAGAGAATATTTCGTGACCTCTTTATCCGCGAAG....................................................................................GTTTTCAGTTTGATTATGTTTTTGATTGGACTATATTAAAGTATCAGCAATCGCAAATTGCAGCTCCTCCTTCCCGACCTCTT.......................................................................GGTGCTGGTGCTGGAACCAGCTCAGGCATGCCTCCAGTTATTCCCAAGGCAGAAAGACAGGCAG.......................................................................................................................................................................GTGAAGATGAAGGAAGACAATCAGCAGATCCCTCTCGGAGGAGAAGTCCTGTGCCACCACTGATTACTTCTGGAAGTTTATCCAGGCAGAAAAGTCCTATTGGAAATGATTCCACGAGCAAAGAGGCTATG...............................................................................................................................................................................................................................................................................................................................................TTGTCAAGCTCCAGTTTTCTGGGAAGACCTAGTGGGTCTCTGAGGCAAGGTCTAGTCTCTGGCAGCCGTGAGACTTTCACCATGGGAAATGACTCTGACCCTACACATTCTCGCACGCCTGAGGCAAGTCCAGCAACTATGCACAAAATATCAGGTGGACATAGAAGCTCTCTACTTGGTGGATCATCTGATCCTAGGTATGCCTCATCTAGCAAGAATACTTCTGGGATAAAGAACTATGAATCGGCGCTCAAAGGAATTGAGACTCTACATTTTGATGATGAAGAGAGGGCTCATTGATTGCAAATCCTTTCACATGTAAATTTTTACTTGTTTGGTAGACTTCAGATATAGATTGAGGCCCTGAAAGCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324862" ref_strand="+" ref_description="SGN-U324862        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to calmodulin-binding family protein [Arabidopsis thaliana] (TAIR:At2g26190.1); similar to putative calmodulin-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45140.1); contains InterPro domain IQ calmodulin-binding region (InterPro:IPR000048) | chr4:15944325-15947029 REVERSE | Aliases: None(evalue: 1e-29, score=126) genbank/nr: calmodulin(evalue: 8e-28, score=126)">
      <seq>tcactatcacccaactgaagagaacttcaaggagttcataagctttcttgaagaacacaaagttgatcttacaaatgttaagagatgtgcagttgatgacgacaatctctcagaggcatcaaacagccaaccatctgttgatctttcaattgctaaagaatctgaagaaagaaacacatcagaatccaagaaaccagaggatgtcatcatcaataagaaagcacaaacatttagcttctccaaacatttgtcaagcaaatggacaagtggaactggacctcgtattggctgtgttagggattaccctacagaactacaattccgagcacttgaacaagttaatttgtcgcctcgggtggtcaatggagatttcaacttctctagtccaatcccctcaccaaggccaagcccaaacattaggctatcacctaggattgcacatatgggactaccgagtccccggacaccaatttctgtgcctaactaagaaacattccaaacaaatgaagtgacagacctcctcgactccacacggaaaattagcccgcgggaggaacatactaactcaaatcttcaacttatttgttcattcatatttgtattccaattgaatttggattttcaaataagacaagacatgattatggttcctttgtatagatttttttttgttgttgaaataatttgaacatacaaattttttttatataagaaagttaccaaataacattttattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0224G23.1" temp_strand="-" temp_description="C07HBa0224G23.1  AC210362.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0224G23 upload_account_name:france">
        <position start="80873" stop="28257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80573" g_stop="80492" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80491" i_stop="80394" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80393" g_stop="79737" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="739" r_length="657" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79736" i_stop="79606" i_length="131">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79605" g_stop="79588" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="757" r_length="18" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0224G23.1" gen_strand="-" ref_id="SGN-U324862" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0224G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80573" e_stop="80492"/>
          <exon e_start="80393" e_stop="79737"/>
          <exon e_start="79605" e_stop="79588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTATCACCCAACTGAAGAGAACTTCAAGGAGTTCATAAGCTTTCTTGAAGAACACAAAGTTGATCTTACAAATGTTAAGGTACGTAAATGTTGAAATCATTGACGTACTATATATATATGGTGTTACGTTCAACAACATTGCTAACAGTCATATACATGATTTATTTTCTTATACAGAGATGTGCAGTTGATGACGACAATCTCTCAGAGGCATCAAACAGCCAACCATCTGTTGATCTTTCAATTGCTAAAGAATCTGAAGAAAGAAACACATCAGAATCCAAGAAACCAGAGGATGTCATCATCAATAAGAAAGCACAAACATTTAGCTTCTCCAAACATTTGTCAAGCAAATGGACAAGTGGAACTGGACCTCGTATTGGCTGTGTTAGGGATTACCCTACAGAACTACAATTCCGAGCACTTGAACAAGTTAATTTGTCGCCTCGGGTGGTCAATGGAGATTTCAACTTCTCTAGTCCAATCCCCTCACCAAGGCCAAGCCCAAACATTAGGCTATCACCTAGGATTGCACATATGGGACTACCGAGTCCCCGGACACCAATTTCTGTGCCTAACTAAGAAACATTCCAAACAAATGAAGTGACAGACCTCCTCGACTCCACACGGAAAATTAGCCCGCGGGAGGAACATACTAACTCAAATCTTCAACTTATTTGTTCATTCATATTTGTATTCCAATTGAATTTGGATTTTCAAATAAGACAAGACATGATTATGGTTCCTTTGTATAGATTTTTTTTTGTTGTTGAAATAATCTGAACATACAAATTTTTTTTATATAAGAAAGTTACCAAATAACATTTTATTGGATACACTCTCTCTTTGTGGTATTTCATCTCATCTTGTTTCTTGAACACTCATTGTGTATCCATTGTGCAATAGATAGGGAACAACCTACTTGAGTTTTTTATAAAAGAAATACGATGTTGTTTTGATGATAGATCAAAGGACAAAGCACA</genome_strand>
        <mrna_strand>TCACTATCACCCAACTGAAGAGAACTTCAAGGAGTTCATAAGCTTTCTTGAAGAACACAAAGTTGATCTTACAAATGTTAAG..................................................................................................AGATGTGCAGTTGATGACGACAATCTCTCAGAGGCATCAAACAGCCAACCATCTGTTGATCTTTCAATTGCTAAAGAATCTGAAGAAAGAAACACATCAGAATCCAAGAAACCAGAGGATGTCATCATCAATAAGAAAGCACAAACATTTAGCTTCTCCAAACATTTGTCAAGCAAATGGACAAGTGGAACTGGACCTCGTATTGGCTGTGTTAGGGATTACCCTACAGAACTACAATTCCGAGCACTTGAACAAGTTAATTTGTCGCCTCGGGTGGTCAATGGAGATTTCAACTTCTCTAGTCCAATCCCCTCACCAAGGCCAAGCCCAAACATTAGGCTATCACCTAGGATTGCACATATGGGACTACCGAGTCCCCGGACACCAATTTCTGTGCCTAACTAAGAAACATTCCAAACAAATGAAGTGACAGACCTCCTCGACTCCACACGGAAAATTAGCCCGCGGGAGGAACATACTAACTCAAATCTTCAACTTATTTGTTCATTCATATTTGTATTCCAATTGAATTTGGATTTTCAAATAAGACAAGACATGATTATGGTTCCTTTGTATAGATTTTTTTTTGTTGTTGAAATAATTTGAACATACAAATTTTTTTTATATAAGAAAGTTACCAAATAACATTTTATTGAA...................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321219" ref_strand="+" ref_description="SGN-U321219        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif | chr2:11154717-11157588 REVERSE | Aliases: T1D16.17, T1D16_17(evalue: 1e-109, score=392) genbank/nr: gi|18401055|ref|NP_565618.1| expressed protein [Arabidopsis thaliana] gi|25367179|pir||E84657 hypothetical protein At2g26190 [imported] - Arabidopsis thaliana gi|3075398|gb|AAC14530.1| expressed protein [Arabidopsis thaliana] gi|16930469|gb|AAL31920.1| At2g26190/T1D16.17 [Arabidopsis thaliana] gi|20453237|gb|AAM19857.1| At2g26190/T1D16.17 [Arabidopsis thaliana] gi|22135809|gb|AAM91091.1| At2g26190/T1D16.17 [Arabidopsis thaliana](evalue: 9e-108, score=392)">
      <seq>ttttcctttgttcttgtgttgtatcttatatttgtaaagaagattaactgaaagatgacagtgataagaacaaacagttttaaaggaacagagtcagaaactatcacgaagccgaagaagaattcgataaatgtaacaaattgcgagcctttaaaacttatgctacacacaacattgtcattcaaaaatctggttcaagttcaagattctgttgtggcccttcctgaacctgctctcatgttttcaccccgacctgtttgtgaactcgatgctgcagctgttaagcttcaaaaagtatacaagagttacaggactagaagaaatctagctgattgtgctgttgttgtagaagaattatggtggaaggcattagattttgcagctttgaagagaagttctgtttcatttttcaacgttgaaaagcccgaaactgctgtttctcgatgggctagagcacgtacaagagctgctaaggttggaaaaggattgtccaaagatgaaaaagctcaaaaattggctctgcagcattggctagaagctattgatccacgacatcgttatggccacaacttgcacttctattatgatttgtggtttttgagcgaaagctctcagcctttcttctactggttggacgttggagatgggaaagaaataaacctcgagaaatgtccaaggacaaaattgcaccatcaatgcatcaagtatctcggaccaaaggagcgggaatcatatgaagtagtcattgagaatgggaagcttgtatataaacaaagtggtgtatcagttaagtcagtagagggttccaagtcgatatttgttcttagcacaacaaggacattgtatgtaggacagaagcaaaagggcacatttcaacattcgagtttcctatcaggtggtgctatcacagcagctggaagactagttgctcattctggaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0224G23-FS6yP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0224G23.1" temp_strand="-" temp_description="C07HBa0224G23.1  AC210362.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0224G23 upload_account_name:france">
        <position start="82337" stop="80391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82037" g_stop="81679" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81678" i_stop="81573" i_length="106">
            <donor d_prob="0.342" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81572" g_stop="81392" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="540" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81391" i_stop="81304" i_length="88">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81303" g_stop="81215" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="629" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81214" i_stop="81108" i_length="107">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81107" g_stop="81020" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="717" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81019" i_stop="80918" i_length="102">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80917" g_stop="80691" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="944" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0224G23.1" gen_strand="-" ref_id="SGN-U321219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>944</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0224G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82037" e_stop="81679"/>
          <exon e_start="81572" e_stop="81392"/>
          <exon e_start="81303" e_stop="81215"/>
          <exon e_start="81107" e_stop="81020"/>
          <exon e_start="80917" e_stop="80691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTTTGTTCTTGTGTTGTATCTTATATTTGTAAAGAAGATTAACTGAAAGATGACAGTGATAAGAACAAACAGTTTTAAAGGAACAGAGTCAGAAACTATCACGAAGCCGAAGAAGAATTCGATAAATGTAACAAATTGCGAGCCTTTAAAACTTATGCTACACACAACATTGTCATTCAAAAATCTGGTTCAAGTTCAAGATTCTGTTGTGGCCCTTCCTGAACCTGCTCTCATGTTTTCACCCCGACCTGTTTGTGAACTCGATGCTGCAGCTGTTAAGCTTCAAAAAGTATACAAGAGTTACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATGGTTGGTGTTATGATAATTAATCCTGTTCCATTTCAATATCTGTGTTTGTGTACATGTTTTCTATTCAATTTTATGTTTATTGAACAAATATCGTACATGTATGTAGGTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTGGGCAAATAAGTGATTTTCTTTCATGTAAGCTAAATTTTCGTATGATGTAGCAATTGACTCTTCGTTTTCTTTCTCTGTAGATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTGGTGAGTAGTTCATCGCGAATATTACATACTAAATGTTTTGAATTTGTAGTGTTCCAATGAGAAATGTTCTCTTGATCTGATCAGTTTCCCTTTTTTTGGCTATTAAGGTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCAGTAAGTTCTTATGAAACTTAATTTACCAGATGTCTTTGGATCATTCAATTACATGTGTTTAAACTTCTTTTTGACTTAATTGCTTATGCTTTACAATTTCAGAAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCTTGTATATAAACAAAGTGGTGTATCAGTTAAGTCAGTAGAGGGTTCCAAGTCGATATTTGTTCTTAGCACAACAAGGACATTGTATGTAGGACAGAAGCAAAAGGGCACATTTCAACATTCGAGTTTCCTATCAGGTGGTGCTATCACAGCAGCTGGAAGACTAGTTGCTCATTCTGGAATTCT</genome_strand>
        <mrna_strand>TTTTCCTTTGTTCTTGTGTTGTATCTTATATTTGTAAAGAAGATTAACTGAAAGATGACAGTGATAAGAACAAACAGTTTTAAAGGAACAGAGTCAGAAACTATCACGAAGCCGAAGAAGAATTCGATAAATGTAACAAATTGCGAGCCTTTAAAACTTATGCTACACACAACATTGTCATTCAAAAATCTGGTTCAAGTTCAAGATTCTGTTGTGGCCCTTCCTGAACCTGCTCTCATGTTTTCACCCCGACCTGTTTGTGAACTCGATGCTGCAGCTGTTAAGCTTCAAAAAGTATACAAGAGTTACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATG..........................................................................................................GTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCT........................................................................................ATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTG...........................................................................................................GTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCA......................................................................................................AAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCTTGTATATAAACAAAGTGGTGTATCAGTTAAGTCAGTAGAGGGTTCCAAGTCGATATTTGTTCTTAGCACAACAAGGACATTGTATGTAGGACAGAAGCAAAAGGGCACATTTCAACATTCGAGTTTCCTATCAGGTGGTGCTATCACAGCAGCTGGAAGACTAGTTGCTCATTCTGGAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="33357" PGL_stop="33828"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33357" e_stop="33828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="33357" e_stop="33828" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33357" stop="33828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGGGGTTTCATCCGGACACTTAAACAGATTTCTTGTTTTACACAAACTTAACATAACCTTGGTCAACAGTTAGAGGGGTTTATAACACTAATTCTGACCATGTGTAGTTGTCTGGATGAAACCTCATGGAGTCGAGGGCTGGGAACACAAATAGGTGTAAGTATGAGTGTCCATTTGGCTATTCAGGTTGACCTATTAGGTTACAAAAAGGGAGCATCTTTGGTCCATCCTAATGAACACCCTAAATAATACTCCCTCTGTCCCAATTTATGTGACTTACTTTTCTTTTTAGTCAATCCCAAAAAGAATGACACATTTTTATATTATGCAAGAATTGACTATAAAATGTCTATTTTACCCTTAATGAAATGATTTACAGCCTCACAAATTTCTATCATTCATTTTGGACCATAAGTTTTAAAGGTCTTCCTTTCTTTCTTAAACTTCGTGCTGAGTCAAACTATCTCACAT</gDNA_template>
            <first_frame> T  G  F  H  P  D  T  *  T  D  F  L  F  Y  T  N  L  T  *  P  W  S  T  V  R  G  V  Y  N  T  N  S  D  H  V  *  L  S  G  *  N  L  M  E  S  R  A  G  N  T  N  R  C  K  Y  E  C  P  F  G  Y  S  G  *  P  I  R  L  Q  K  G  S  I  F  G  P  S  *  *  T  P  *  I  I  L  P  L  S  Q  F  M  *  L  T  F  L  F  S  Q  S  Q  K  E  *  H  I  F  I  L  C  K  N  *  L  *  N  V  Y  F  T  L  N  E  M  I  Y  S  L  T  N  F  Y  H  S  F  W  T  I  S  F  K  G  L  P  F  F  L  K  L  R  A  E  S  N  Y  L  T  </first_frame>
            <second_frame>  R  G  F  I  R  T  L  K  Q  I  S  C  F  T  Q  T  *  H  N  L  G  Q  Q  L  E  G  F  I  T  L  I  L  T  M  C  S  C  L  D  E  T  S  W  S  R  G  L  G  T  Q  I  G  V  S  M  S  V  H  L  A  I  Q  V  D  L  L  G  Y  K  K  G  A  S  L  V  H  P  N  E  H  P  K  *  Y  S  L  C  P  N  L  C  D  L  L  F  F  L  V  N  P  K  K  N  D  T  F  L  Y  Y  A  R  I  D  Y  K  M  S  I  L  P  L  M  K  *  F  T  A  S  Q  I  S  I  I  H  F  G  P  *  V  L  K  V  F  L  S  F  L  N  F  V  L  S  Q  T  I  S  H </second_frame>
            <third_frame>   G  V  S  S  G  H  L  N  R  F  L  V  L  H  K  L  N  I  T  L  V  N  S  *  R  G  L  *  H  *  F  *  P  C  V  V  V  W  M  K  P  H  G  V  E  G  W  E  H  K  *  V  *  V  *  V  S  I  W  L  F  R  L  T  Y  *  V  T  K  R  E  H  L  W  S  I  L  M  N  T  L  N  N  T  P  S  V  P  I  Y  V  T  Y  F  S  F  *  S  I  P  K  R  M  T  H  F  Y  I  M  Q  E  L  T  I  K  C  L  F  Y  P  *  *  N  D  L  Q  P  H  K  F  L  S  F  I  L  D  H  K  F  *  R  S  S  F  L  S  *  T  S  C  *  V  K  L  S  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0224G23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33409" stop="33606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNLGQQLEGFITLILTMCSCLDETSWSRGLGTQIGVSMSVHLAIQVDLLGYKKGASLVHPNEHPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="45069" PGL_stop="41477"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45069" e_stop="45024"/>
            <exon e_start="44932" e_stop="44837"/>
            <exon e_start="44746" e_stop="44676"/>
            <exon e_start="43696" e_stop="43635"/>
            <exon e_start="43540" e_stop="43477"/>
            <exon e_start="43407" e_stop="43323"/>
            <exon e_start="43239" e_stop="43113"/>
            <exon e_start="43028" e_stop="42946"/>
            <exon e_start="42874" e_stop="42811"/>
            <exon e_start="42643" e_stop="42513"/>
            <exon e_start="42177" e_stop="41802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.880" e_score="0.609"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.619" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.407" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.583" acc_prob="0.825" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.609">
            <gDNA_exon_boundary e_start="45069" e_stop="45024" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.880">
            <gDNA_intron_boundary i_start="45023" i_stop="44933" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44932" e_stop="44837" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44836" i_stop="44747" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44746" e_stop="44676" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44675" i_stop="43697" i_length="979"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43696" e_stop="43635" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.976">
            <gDNA_intron_boundary i_start="43634" i_stop="43541" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43540" e_stop="43477" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43476" i_stop="43408" i_length="69"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43407" e_stop="43323" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.619">
            <gDNA_intron_boundary i_start="43322" i_stop="43240" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43239" e_stop="43113" e_length="127"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.407">
            <gDNA_intron_boundary i_start="43112" i_stop="43029" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43028" e_stop="42946" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42945" i_stop="42875" i_length="71"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42874" e_stop="42811" e_length="64"/>
          </exon>
          <intron i_serial="9" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42810" i_stop="42644" i_length="167"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="42643" e_stop="42513" e_length="131"/>
          </exon>
          <intron i_serial="10" don_prob="0.583" acc_prob="0.825">
            <gDNA_intron_boundary i_start="42512" i_stop="42178" i_length="335"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="42177" e_stop="41802" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45069" stop="45024"/>
              <exon start="44932" stop="44837"/>
              <exon start="44746" stop="44676"/>
              <exon start="43696" stop="43635"/>
              <exon start="43540" stop="43477"/>
              <exon start="43407" stop="43323"/>
              <exon start="43239" stop="43113"/>
              <exon start="43028" stop="42946"/>
              <exon start="42874" stop="42811"/>
              <exon start="42643" stop="42513"/>
              <exon start="42177" stop="41802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGAAGCTTTCCCTGAAGACAGTTTTAATGCTTGCTGATCAAATG : ATAAATCGTGTTGAATTTGTTCATTCTAAATCATTTTTGCATCGAGATATCAAGCCAGACAATTTTCTTATGGGCTTGGGAAGGCGTGCAAATCAG : GTGTATGCAATTGACTTCGGTCTAGCCAAGAAGTATCGAGATACTTCATCTCACCAACACATTCCTTACCG : TGAGAACAAAAACTTGACGGGCACTGCAAGATATGCAAGCATGAACACTCACCTCGGTATCG : AGCAAAGCAGGAGGGATGATTTGGAGTCTCTTGGATTTGTTCTTATGTACTTCCTCCGAGGAAG : TCTTCCTTGGCAAGGGCTGAAAGCAGGAAATAAGAAGCAGAAGTATGAGAAAATTAGTGAAAAGAAGGTTTCAACATCTATCGAG : GCTTTATGTCGAGGTTATCCTACTGAATTTGCTTCATATTTCCATTACTGCCGTTCTCTGCGCTTCGAGGATAAACCAGATTATGCTTATCTGAAGAGAATATTTCGTGACCTCTTTATCCGCGAAG : GTTTTCAGTTTGATTATGTTTTTGATTGGACTATATTAAAGTATCAGCAATCGCAAATTGCAGCTCCTCCTTCCCGACCTCTT : GGTGCTGGTGCTGGAACCAGCTCAGGCATGCCTCCAGTTATTCCCAAGGCAGAAAGACAGGCAG : GTGAAGATGAAGGAAGACAATCAGCAGATCCCTCTCGGAGGAGAAGTCCTGTGCCACCACTGATTACTTCTGGAAGTTTATCCAGGCAGAAAAGTCCTATTGGAAATGATTCCACGAGCAAAGAGGCTATG : TTGTCAAGCTCCAGTTTTCTGGGAAGACCTAGTGGGTCTCTGAGGCAAGGTCTAGTCTCTGGCAGCCGTGAGACTTTCACCATGGGAAATGACTCTGACCCTACACATTCTCGCACGCCTGAGGCAAGTCCAGCAACTATGCACAAAATATCAGGTGGACATAGAAGCTCTCTACTTGGTGGATCATCTGATCCTAGGTATGCCTCATCTAGCAAGAATACTTCTGGGATAAAGAACTATGAATCGGCGCTCAAAGGAATTGAGACTCTACATTTTGATGATGAAGAGAGGGCTCATTGATTGCAAATCCTTTCACATGTAAATTTTTACTTGTTTGGTAGACTTCAGATATAGATTGAGGCCCTGAAAGCTTATT</gDNA_template>
            <first_frame> Q  E  A  F  P  E  D  S  F  N  A  C  *  S  N   : D  K  S  C  *  I  C  S  F  *  I  I  F  A  S  R  Y  Q  A  R  Q  F  S  Y  G  L  G  K  A  C  K  S   : G  V  C  N  *  L  R  S  S  Q  E  V  S  R  Y  F  I  S  P  T  H  S  L  P  :  *  E  Q  K  L  D  G  H  C  K  I  C  K  H  E  H  S  P  R  Y  R :   A  K  Q  E  G  *  F  G  V  S  W  I  C  S  Y  V  L  P  P  R  K  :  S  S  L  A  R  A  E  S  R  K  *  E  A  E  V  *  E  N  *  *  K  E  G  F  N  I  Y  R   : G  F  M  S  R  L  S  Y  *  I  C  F  I  F  P  L  L  P  F  S  A  L  R  G  *  T  R  L  C  L  S  E  E  N  I  S  *  P  L  Y  P  R  R :   F  S  V  *  L  C  F  *  L  D  Y  I  K  V  S  A  I  A  N  C  S  S  S  F  P  T  S   : W  C  W  C  W  N  Q  L  R  H  A  S  S  Y  S  Q  G  R  K  T  G  R :   *  R  *  R  K  T  I  S  R  S  L  S  E  E  K  S  C  A  T  T  D  Y  F  W  K  F  I  Q  A  E  K  S  Y  W  K  *  F  H  E  Q  R  G  Y   : V  V  K  L  Q  F  S  G  K  T  *  W  V  S  E  A  R  S  S  L  W  Q  P  *  D  F  H  H  G  K  *  L  *  P  Y  T  F  S  H  A  *  G  K  S  S  N  Y  A  Q  N  I  R  W  T  *  K  L  S  T  W  W  I  I  *  S  *  V  C  L  I  *  Q  E  Y  F  W  D  K  E  L  *  I  G  A  Q  R  N  *  D  S  T  F  *  *  *  R  E  G  S  L  I  A  N  P  F  T  C  K  F  L  L  V  W  *  T  S  D  I  D  *  G  P  E  S  L   </first_frame>
            <second_frame>  R  K  L  S  L  K  T  V  L  M  L  A  D  Q  M  :  I  N  R  V  E  F  V  H  S  K  S  F  L  H  R  D  I  K  P  D  N  F  L  M  G  L  G  R  R  A  N  Q  :  V  Y  A  I  D  F  G  L  A  K  K  Y  R  D  T  S  S  H  Q  H  I  P  Y  R :   E  N  K  N  L  T  G  T  A  R  Y  A  S  M  N  T  H  L  G  I   : E  Q  S  R  R  D  D  L  E  S  L  G  F  V  L  M  Y  F  L  R  G  S :   L  P  W  Q  G  L  K  A  G  N  K  K  Q  K  Y  E  K  I  S  E  K  K  V  S  T  S  I  E  :  A  L  C  R  G  Y  P  T  E  F  A  S  Y  F  H  Y  C  R  S  L  R  F  E  D  K  P  D  Y  A  Y  L  K  R  I  F  R  D  L  F  I  R  E   : G  F  Q  F  D  Y  V  F  D  W  T  I  L  K  Y  Q  Q  S  Q  I  A  A  P  P  S  R  P  L  :  G  A  G  A  G  T  S  S  G  M  P  P  V  I  P  K  A  E  R  Q  A   : G  E  D  E  G  R  Q  S  A  D  P  S  R  R  R  S  P  V  P  P  L  I  T  S  G  S  L  S  R  Q  K  S  P  I  G  N  D  S  T  S  K  E  A  M  :  L  S  S  S  S  F  L  G  R  P  S  G  S  L  R  Q  G  L  V  S  G  S  R  E  T  F  T  M  G  N  D  S  D  P  T  H  S  R  T  P  E  A  S  P  A  T  M  H  K  I  S  G  G  H  R  S  S  L  L  G  G  S  S  D  P  R  Y  A  S  S  S  K  N  T  S  G  I  K  N  Y  E  S  A  L  K  G  I  E  T  L  H  F  D  D  E  E  R  A  H  *  L  Q  I  L  S  H  V  N  F  Y  L  F  G  R  L  Q  I  *  I  E  A  L  K  A  Y  </second_frame>
            <third_frame>   G  S  F  P  *  R  Q  F  *  C  L  L  I  K  * :   *  I  V  L  N  L  F  I  L  N  H  F  C  I  E  I  S  S  Q  T  I  F  L  W  A  W  E  G  V  Q  I  R :   C  M  Q  L  T  S  V  *  P  R  S  I  E  I  L  H  L  T  N  T  F  L  T   : V  R  T  K  T  *  R  A  L  Q  D  M  Q  A  *  T  L  T  S  V  S  :  S  K  A  G  G  M  I  W  S  L  L  D  L  F  L  C  T  S  S  E  E   : V  F  L  G  K  G  *  K  Q  E  I  R  S  R  S  M  R  K  L  V  K  R  R  F  Q  H  L  S  R :   L  Y  V  E  V  I  L  L  N  L  L  H  I  S  I  T  A  V  L  C  A  S  R  I  N  Q  I  M  L  I  *  R  E  Y  F  V  T  S  L  S  A  K  :  V  F  S  L  I  M  F  L  I  G  L  Y  *  S  I  S  N  R  K  L  Q  L  L  L  P  D  L  L :   V  L  V  L  E  P  A  Q  A  C  L  Q  L  F  P  R  Q  K  D  R  Q  :  V  K  M  K  E  D  N  Q  Q  I  P  L  G  G  E  V  L  C  H  H  *  L  L  L  E  V  Y  P  G  R  K  V  L  L  E  M  I  P  R  A  K  R  L  C :   C  Q  A  P  V  F  W  E  D  L  V  G  L  *  G  K  V  *  S  L  A  A  V  R  L  S  P  W  E  M  T  L  T  L  H  I  L  A  R  L  R  Q  V  Q  Q  L  C  T  K  Y  Q  V  D  I  E  A  L  Y  L  V  D  H  L  I  L  G  M  P  H  L  A  R  I  L  L  G  *  R  T  M  N  R  R  S  K  E  L  R  L  Y  I  L  M  M  K  R  G  L  I  D  C  K  S  F  H  M  *  I  F  T  C  L  V  D  F  R  Y  R  L  R  P  *  K  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0224G23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45068" stop="45024"/>
                    <exon start="44932" stop="44837"/>
                    <exon start="44746" stop="44676"/>
                    <exon start="43696" stop="43635"/>
                    <exon start="43540" stop="43477"/>
                    <exon start="43407" stop="43323"/>
                    <exon start="43239" stop="43113"/>
                    <exon start="43028" stop="42946"/>
                    <exon start="42874" stop="42811"/>
                    <exon start="42643" stop="42513"/>
                    <exon start="42177" stop="41878"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSSHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFEDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQIAAPPSRPLGAGAGTSSGMPPVIPKAERQAGEDEGRQSADPSRRRSPVPPLITSGSLSRQKSPIGNDSTSKEAMLSSSSFLGRPSGSLRQGLVSGSRETFTMGNDSDPTHSRTPEASPATMHKISGGHRSSLLGGSSDPRYASSSKNTSGIKNYESALKGIETLHFDDEERAH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42621" e_stop="42513"/>
            <exon e_start="42348" e_stop="41477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.583" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42621" e_stop="42513" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.583" acc_prob="0.935">
            <gDNA_intron_boundary i_start="42512" i_stop="42349" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="42348" e_stop="41477" e_length="872"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42621" stop="42513"/>
              <exon start="42348" stop="41477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAGATCCCTCTCGGAGGAGAAGTCCTGTGCCACCACTGATTACTTCTGGAAGTTTATCCAGGCAGAAAAGTCCTATTGGAAATGATTCCACGAGCAAAGAGGCTATG : ATAAATTTTCCCTGAGATGCTAGCCCCTTGGCTAAAGATGTATATCAGCCAAGGGGAAGTAAATAATAATGGTGTTTTCAAAGTTGTCAGAGTTGAAGCTTACTTTTGTGCTACAACACAAGTCTTTAACCCTTTCCCCTCCAGTTTTCTGAATCATACCAATATTTGCAGTTGTCAAGCTCCAGTTTTCTGGGAAGACCTAGTGGGTCTCTGAGGCAAGGTCTAGTCTCTGGCAGCCGTGAGACTTTCACCATGGGAAATGACTCTGACCCTACACATTCTCGCACGCCTGAGGCAAGTCCAGCAACTATGCACAAAATATCAGGTGGACATAGAAGCTCTCTACTTGGTGGATCATCTGATCCTAGGTATGCCTCATCTAGCAAGAATACTTCTGGGATAAAGAACTATGAATCGGCGCTCAAAGGAATTGAGACTCTACATTTTGATGATGAAGAGAGGGCTCATTGATTGCAAATCCTTTCACATGTAAATTTTTACTTGTTTGGTAGACTTCAGATATAGATTGAGGCCCTGAAAGCTTATTTTTGTTTGAATTCGTGGGTTGGAAACTAGTGAATGAGCAGTTGTTATTCACTCTGCCAAAAGATCTACAGCAAATAAAAAAATCCAGATGGTGCAAATGCAGGAGGTGTGAGGTTCTGTCAATACTAACTCCAACATGGTGCATGACTCTCTATAGATGTAGGCAATGCATGCAGCATTGTCTATAATCATTTAGTTCTGTCCAACTCTAGGGGATCAGTTAAACTGTATATTAAATTTCCCCATACTTTTAATACTTTTCAGGTTAGTAGATGTGGTTCATTTAAATACAGTTCTCAAATATTAGTGTTCTGGTAATTCATGTG</gDNA_template>
            <first_frame> S  R  S  L  S  E  E  K  S  C  A  T  T  D  Y  F  W  K  F  I  Q  A  E  K  S  Y  W  K  *  F  H  E  Q  R  G  Y   : D  K  F  S  L  R  C  *  P  L  G  *  R  C  I  S  A  K  G  K  *  I  I  M  V  F  S  K  L  S  E  L  K  L  T  F  V  L  Q  H  K  S  L  T  L  S  P  P  V  F  *  I  I  P  I  F  A  V  V  K  L  Q  F  S  G  K  T  *  W  V  S  E  A  R  S  S  L  W  Q  P  *  D  F  H  H  G  K  *  L  *  P  Y  T  F  S  H  A  *  G  K  S  S  N  Y  A  Q  N  I  R  W  T  *  K  L  S  T  W  W  I  I  *  S  *  V  C  L  I  *  Q  E  Y  F  W  D  K  E  L  *  I  G  A  Q  R  N  *  D  S  T  F  *  *  *  R  E  G  S  L  I  A  N  P  F  T  C  K  F  L  L  V  W  *  T  S  D  I  D  *  G  P  E  S  L  F  L  F  E  F  V  G  W  K  L  V  N  E  Q  L  L  F  T  L  P  K  D  L  Q  Q  I  K  K  S  R  W  C  K  C  R  R  C  E  V  L  S  I  L  T  P  T  W  C  M  T  L  Y  R  C  R  Q  C  M  Q  H  C  L  *  S  F  S  S  V  Q  L  *  G  I  S  *  T  V  Y  *  I  S  P  Y  F  *  Y  F  S  G  *  *  M  W  F  I  *  I  Q  F  S  N  I  S  V  L  V  I  H  V </first_frame>
            <second_frame>  A  D  P  S  R  R  R  S  P  V  P  P  L  I  T  S  G  S  L  S  R  Q  K  S  P  I  G  N  D  S  T  S  K  E  A  M  :  I  N  F  P  *  D  A  S  P  L  A  K  D  V  Y  Q  P  R  G  S  K  *  *  W  C  F  Q  S  C  Q  S  *  S  L  L  L  C  Y  N  T  S  L  *  P  F  P  L  Q  F  S  E  S  Y  Q  Y  L  Q  L  S  S  S  S  F  L  G  R  P  S  G  S  L  R  Q  G  L  V  S  G  S  R  E  T  F  T  M  G  N  D  S  D  P  T  H  S  R  T  P  E  A  S  P  A  T  M  H  K  I  S  G  G  H  R  S  S  L  L  G  G  S  S  D  P  R  Y  A  S  S  S  K  N  T  S  G  I  K  N  Y  E  S  A  L  K  G  I  E  T  L  H  F  D  D  E  E  R  A  H  *  L  Q  I  L  S  H  V  N  F  Y  L  F  G  R  L  Q  I  *  I  E  A  L  K  A  Y  F  C  L  N  S  W  V  G  N  *  *  M  S  S  C  Y  S  L  C  Q  K  I  Y  S  K  *  K  N  P  D  G  A  N  A  G  G  V  R  F  C  Q  Y  *  L  Q  H  G  A  *  L  S  I  D  V  G  N  A  C  S  I  V  Y  N  H  L  V  L  S  N  S  R  G  S  V  K  L  Y  I  K  F  P  H  T  F  N  T  F  Q  V  S  R  C  G  S  F  K  Y  S  S  Q  I  L  V  F  W  *  F  M   </second_frame>
            <third_frame>   Q  I  P  L  G  G  E  V  L  C  H  H  *  L  L  L  E  V  Y  P  G  R  K  V  L  L  E  M  I  P  R  A  K  R  L  * :   *  I  F  P  E  M  L  A  P  W  L  K  M  Y  I  S  Q  G  E  V  N  N  N  G  V  F  K  V  V  R  V  E  A  Y  F  C  A  T  T  Q  V  F  N  P  F  P  S  S  F  L  N  H  T  N  I  C  S  C  Q  A  P  V  F  W  E  D  L  V  G  L  *  G  K  V  *  S  L  A  A  V  R  L  S  P  W  E  M  T  L  T  L  H  I  L  A  R  L  R  Q  V  Q  Q  L  C  T  K  Y  Q  V  D  I  E  A  L  Y  L  V  D  H  L  I  L  G  M  P  H  L  A  R  I  L  L  G  *  R  T  M  N  R  R  S  K  E  L  R  L  Y  I  L  M  M  K  R  G  L  I  D  C  K  S  F  H  M  *  I  F  T  C  L  V  D  F  R  Y  R  L  R  P  *  K  L  I  F  V  *  I  R  G  L  E  T  S  E  *  A  V  V  I  H  S  A  K  R  S  T  A  N  K  K  I  Q  M  V  Q  M  Q  E  V  *  G  S  V  N  T  N  S  N  M  V  H  D  S  L  *  M  *  A  M  H  A  A  L  S  I  I  I  *  F  C  P  T  L  G  D  Q  L  N  C  I  L  N  F  P  I  L  L  I  L  F  R  L  V  D  V  V  H  L  N  T  V  L  K  Y  *  C  S  G  N  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0224G23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42219" stop="41878"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFPLQFSESYQYLQLSSSSFLGRPSGSLRQGLVSGSRETFTMGNDSDPTHSRTPEASPATMHKISGGHRSSLLGGSSDPRYASSSKNTSGIKNYESALKGIETLHFDDEERAH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0224G23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41818" stop="41615"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPESLFLFEFVGWKLVNEQLLFTLPKDLQQIKKSRWCKCRRCEVLSILTPTWCMTLYRCRQCMQHCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="80573" PGL_stop="79588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80573" e_stop="80492"/>
            <exon e_start="80393" e_stop="79737"/>
            <exon e_start="79605" e_stop="79588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.971" e_score="0.997"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80573" e_stop="80492" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80491" i_stop="80394" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="80393" e_stop="79737" e_length="657"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="79736" i_stop="79606" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="0.556">
            <gDNA_exon_boundary e_start="79605" e_stop="79588" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80573" stop="80492"/>
              <exon start="80393" stop="79737"/>
              <exon start="79605" stop="79588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTATCACCCAACTGAAGAGAACTTCAAGGAGTTCATAAGCTTTCTTGAAGAACACAAAGTTGATCTTACAAATGTTAAG : AGATGTGCAGTTGATGACGACAATCTCTCAGAGGCATCAAACAGCCAACCATCTGTTGATCTTTCAATTGCTAAAGAATCTGAAGAAAGAAACACATCAGAATCCAAGAAACCAGAGGATGTCATCATCAATAAGAAAGCACAAACATTTAGCTTCTCCAAACATTTGTCAAGCAAATGGACAAGTGGAACTGGACCTCGTATTGGCTGTGTTAGGGATTACCCTACAGAACTACAATTCCGAGCACTTGAACAAGTTAATTTGTCGCCTCGGGTGGTCAATGGAGATTTCAACTTCTCTAGTCCAATCCCCTCACCAAGGCCAAGCCCAAACATTAGGCTATCACCTAGGATTGCACATATGGGACTACCGAGTCCCCGGACACCAATTTCTGTGCCTAACTAAGAAACATTCCAAACAAATGAAGTGACAGACCTCCTCGACTCCACACGGAAAATTAGCCCGCGGGAGGAACATACTAACTCAAATCTTCAACTTATTTGTTCATTCATATTTGTATTCCAATTGAATTTGGATTTTCAAATAAGACAAGACATGATTATGGTTCCTTTGTATAGATTTTTTTTTGTTGTTGAAATAATCTGAACATACAAATTTTTTTTATATAAGAAAGTTACCAAATAACATTTTATTGGA : ATCAAAGGACAAAGCACA</gDNA_template>
            <first_frame> S  L  S  P  N  *  R  E  L  Q  G  V  H  K  L  S  *  R  T  Q  S  *  S  Y  K  C  *   : E  M  C  S  *  *  R  Q  S  L  R  G  I  K  Q  P  T  I  C  *  S  F  N  C  *  R  I  *  R  K  K  H  I  R  I  Q  E  T  R  G  C  H  H  Q  *  E  S  T  N  I  *  L  L  Q  T  F  V  K  Q  M  D  K  W  N  W  T  S  Y  W  L  C  *  G  L  P  Y  R  T  T  I  P  S  T  *  T  S  *  F  V  A  S  G  G  Q  W  R  F  Q  L  L  *  S  N  P  L  T  K  A  K  P  K  H  *  A  I  T  *  D  C  T  Y  G  T  T  E  S  P  D  T  N  F  C  A  *  L  R  N  I  P  N  K  *  S  D  R  P  P  R  L  H  T  E  N  *  P  A  G  G  T  Y  *  L  K  S  S  T  Y  L  F  I  H  I  C  I  P  I  E  F  G  F  S  N  K  T  R  H  D  Y  G  S  F  V  *  I  F  F  C  C  *  N  N  L  N  I  Q  I  F  F  I  *  E  S  Y  Q  I  T  F  Y  W   : N  Q  R  T  K  H  </first_frame>
            <second_frame>  H  Y  H  P  T  E  E  N  F  K  E  F  I  S  F  L  E  E  H  K  V  D  L  T  N  V  K  :  R  C  A  V  D  D  D  N  L  S  E  A  S  N  S  Q  P  S  V  D  L  S  I  A  K  E  S  E  E  R  N  T  S  E  S  K  K  P  E  D  V  I  I  N  K  K  A  Q  T  F  S  F  S  K  H  L  S  S  K  W  T  S  G  T  G  P  R  I  G  C  V  R  D  Y  P  T  E  L  Q  F  R  A  L  E  Q  V  N  L  S  P  R  V  V  N  G  D  F  N  F  S  S  P  I  P  S  P  R  P  S  P  N  I  R  L  S  P  R  I  A  H  M  G  L  P  S  P  R  T  P  I  S  V  P  N  *  E  T  F  Q  T  N  E  V  T  D  L  L  D  S  T  R  K  I  S  P  R  E  E  H  T  N  S  N  L  Q  L  I  C  S  F  I  F  V  F  Q  L  N  L  D  F  Q  I  R  Q  D  M  I  M  V  P  L  Y  R  F  F  F  V  V  E  I  I  *  T  Y  K  F  F  L  Y  K  K  V  T  K  *  H  F  I  G  :  I  K  G  Q  S  T </second_frame>
            <third_frame>   T  I  T  Q  L  K  R  T  S  R  S  S  *  A  F  L  K  N  T  K  L  I  L  Q  M  L  R :   D  V  Q  L  M  T  T  I  S  Q  R  H  Q  T  A  N  H  L  L  I  F  Q  L  L  K  N  L  K  K  E  T  H  Q  N  P  R  N  Q  R  M  S  S  S  I  R  K  H  K  H  L  A  S  P  N  I  C  Q  A  N  G  Q  V  E  L  D  L  V  L  A  V  L  G  I  T  L  Q  N  Y  N  S  E  H  L  N  K  L  I  C  R  L  G  W  S  M  E  I  S  T  S  L  V  Q  S  P  H  Q  G  Q  A  Q  T  L  G  Y  H  L  G  L  H  I  W  D  Y  R  V  P  G  H  Q  F  L  C  L  T  K  K  H  S  K  Q  M  K  *  Q  T  S  S  T  P  H  G  K  L  A  R  G  R  N  I  L  T  Q  I  F  N  L  F  V  H  S  Y  L  Y  S  N  *  I  W  I  F  K  *  D  K  T  *  L  W  F  L  C  I  D  F  F  L  L  L  K  *  S  E  H  T  N  F  F  Y  I  R  K  L  P  N  N  I  L  L  E :   S  K  D  K  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0224G23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80572" stop="80492"/>
                    <exon start="80393" stop="79989"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYHPTEENFKEFISFLEEHKVDLTNVKRCAVDDDNLSEASNSQPSVDLSIAKESEERNTSESKKPEDVIINKKAQTFSFSKHLSSKWTSGTGPRIGCVRDYPTELQFRALEQVNLSPRVVNGDFNFSSPIPSPRPSPNIRLSPRIAHMGLPSPRTPISVPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0224G23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80532" stop="80492"/>
                    <exon start="80393" stop="79964"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFLKNTKLILQMLRDVQLMTTISQRHQTANHLLIFQLLKNLKKETHQNPRNQRMSSSIRKHKHLASPNICQANGQVELDLVLAVLGITLQNYNSEHLNKLICRLGWSMEISTSLVQSPHQGQAQTLGYHLGLHIWDYRVPGHQFLCLTKKHSKQMK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0224G23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79988" stop="79788"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETFQTNEVTDLLDSTRKISPREEHTNSNLQLICSFIFVFQLNLDFQIRQDMIMVPLYRFFFVVEII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="82037" PGL_stop="80691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82037" e_stop="81679"/>
            <exon e_start="81572" e_stop="81392"/>
            <exon e_start="81303" e_stop="81215"/>
            <exon e_start="81107" e_stop="81020"/>
            <exon e_start="80917" e_stop="80691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.342" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82037" e_stop="81679" e_length="359"/>
          </exon>
          <intron i_serial="1" don_prob="0.342" acc_prob="0.995">
            <gDNA_intron_boundary i_start="81678" i_stop="81573" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81572" e_stop="81392" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.961">
            <gDNA_intron_boundary i_start="81391" i_stop="81304" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81303" e_stop="81215" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="81214" i_stop="81108" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81107" e_stop="81020" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="81019" i_stop="80918" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80917" e_stop="80691" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82037" stop="81679"/>
              <exon start="81572" stop="81392"/>
              <exon start="81303" stop="81215"/>
              <exon start="81107" stop="81020"/>
              <exon start="80917" stop="80691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCCTTTGTTCTTGTGTTGTATCTTATATTTGTAAAGAAGATTAACTGAAAGATGACAGTGATAAGAACAAACAGTTTTAAAGGAACAGAGTCAGAAACTATCACGAAGCCGAAGAAGAATTCGATAAATGTAACAAATTGCGAGCCTTTAAAACTTATGCTACACACAACATTGTCATTCAAAAATCTGGTTCAAGTTCAAGATTCTGTTGTGGCCCTTCCTGAACCTGCTCTCATGTTTTCACCCCGACCTGTTTGTGAACTCGATGCTGCAGCTGTTAAGCTTCAAAAAGTATACAAGAGTTACAGGACTAGAAGAAATCTAGCTGATTGTGCTGTTGTTGTAGAAGAATTATG : GTGGAAGGCATTAGATTTTGCAGCTTTGAAGAGAAGTTCTGTTTCATTTTTCAACGTTGAAAAGCCCGAAACTGCTGTTTCTCGATGGGCTAGAGCACGTACAAGAGCTGCTAAGGTTGGAAAAGGATTGTCCAAAGATGAAAAAGCTCAAAAATTGGCTCTGCAGCATTGGCTAGAAGCT : ATTGATCCACGACATCGTTATGGCCACAACTTGCACTTCTATTATGATTTGTGGTTTTTGAGCGAAAGCTCTCAGCCTTTCTTCTACTG : GTTGGACGTTGGAGATGGGAAAGAAATAAACCTCGAGAAATGTCCAAGGACAAAATTGCACCATCAATGCATCAAGTATCTCGGACCA : AAGGAGCGGGAATCATATGAAGTAGTCATTGAGAATGGGAAGCTTGTATATAAACAAAGTGGTGTATCAGTTAAGTCAGTAGAGGGTTCCAAGTCGATATTTGTTCTTAGCACAACAAGGACATTGTATGTAGGACAGAAGCAAAAGGGCACATTTCAACATTCGAGTTTCCTATCAGGTGGTGCTATCACAGCAGCTGGAAGACTAGTTGCTCATTCTGGAATTCT</gDNA_template>
            <first_frame> F  S  F  V  L  V  L  Y  L  I  F  V  K  K  I  N  *  K  M  T  V  I  R  T  N  S  F  K  G  T  E  S  E  T  I  T  K  P  K  K  N  S  I  N  V  T  N  C  E  P  L  K  L  M  L  H  T  T  L  S  F  K  N  L  V  Q  V  Q  D  S  V  V  A  L  P  E  P  A  L  M  F  S  P  R  P  V  C  E  L  D  A  A  A  V  K  L  Q  K  V  Y  K  S  Y  R  T  R  R  N  L  A  D  C  A  V  V  V  E  E  L  W :   W  K  A  L  D  F  A  A  L  K  R  S  S  V  S  F  F  N  V  E  K  P  E  T  A  V  S  R  W  A  R  A  R  T  R  A  A  K  V  G  K  G  L  S  K  D  E  K  A  Q  K  L  A  L  Q  H  W  L  E  A  :  I  D  P  R  H  R  Y  G  H  N  L  H  F  Y  Y  D  L  W  F  L  S  E  S  S  Q  P  F  F  Y  W :   L  D  V  G  D  G  K  E  I  N  L  E  K  C  P  R  T  K  L  H  H  Q  C  I  K  Y  L  G  P  :  K  E  R  E  S  Y  E  V  V  I  E  N  G  K  L  V  Y  K  Q  S  G  V  S  V  K  S  V  E  G  S  K  S  I  F  V  L  S  T  T  R  T  L  Y  V  G  Q  K  Q  K  G  T  F  Q  H  S  S  F  L  S  G  G  A  I  T  A  A  G  R  L  V  A  H  S  G  I   </first_frame>
            <second_frame>  F  P  L  F  L  C  C  I  L  Y  L  *  R  R  L  T  E  R  *  Q  *  *  E  Q  T  V  L  K  E  Q  S  Q  K  L  S  R  S  R  R  R  I  R  *  M  *  Q  I  A  S  L  *  N  L  C  Y  T  Q  H  C  H  S  K  I  W  F  K  F  K  I  L  L  W  P  F  L  N  L  L  S  C  F  H  P  D  L  F  V  N  S  M  L  Q  L  L  S  F  K  K  Y  T  R  V  T  G  L  E  E  I  *  L  I  V  L  L  L  *  K  N  Y   : G  G  R  H  *  I  L  Q  L  *  R  E  V  L  F  H  F  S  T  L  K  S  P  K  L  L  F  L  D  G  L  E  H  V  Q  E  L  L  R  L  E  K  D  C  P  K  M  K  K  L  K  N  W  L  C  S  I  G  *  K  L :   L  I  H  D  I  V  M  A  T  T  C  T  S  I  M  I  C  G  F  *  A  K  A  L  S  L  S  S  T   : G  W  T  L  E  M  G  K  K  *  T  S  R  N  V  Q  G  Q  N  C  T  I  N  A  S  S  I  S  D  Q :   R  S  G  N  H  M  K  *  S  L  R  M  G  S  L  Y  I  N  K  V  V  Y  Q  L  S  Q  *  R  V  P  S  R  Y  L  F  L  A  Q  Q  G  H  C  M  *  D  R  S  K  R  A  H  F  N  I  R  V  S  Y  Q  V  V  L  S  Q  Q  L  E  D  *  L  L  I  L  E  F  </second_frame>
            <third_frame>   F  L  C  S  C  V  V  S  Y  I  C  K  E  D  *  L  K  D  D  S  D  K  N  K  Q  F  *  R  N  R  V  R  N  Y  H  E  A  E  E  E  F  D  K  C  N  K  L  R  A  F  K  T  Y  A  T  H  N  I  V  I  Q  K  S  G  S  S  S  R  F  C  C  G  P  S  *  T  C  S  H  V  F  T  P  T  C  L  *  T  R  C  C  S  C  *  A  S  K  S  I  Q  E  L  Q  D  *  K  K  S  S  *  L  C  C  C  C  R  R  I  M  :  V  E  G  I  R  F  C  S  F  E  E  K  F  C  F  I  F  Q  R  *  K  A  R  N  C  C  F  S  M  G  *  S  T  Y  K  S  C  *  G  W  K  R  I  V  Q  R  *  K  S  S  K  I  G  S  A  A  L  A  R  S   : Y  *  S  T  T  S  L  W  P  Q  L  A  L  L  L  *  F  V  V  F  E  R  K  L  S  A  F  L  L  L  :  V  G  R  W  R  W  E  R  N  K  P  R  E  M  S  K  D  K  I  A  P  S  M  H  Q  V  S  R  T   : K  G  A  G  I  I  *  S  S  H  *  E  W  E  A  C  I  *  T  K  W  C  I  S  *  V  S  R  G  F  Q  V  D  I  C  S  *  H  N  K  D  I  V  C  R  T  E  A  K  G  H  I  S  T  F  E  F  P  I  R  W  C  Y  H  S  S  W  K  T  S  C  S  F  W  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0224G23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81986" stop="81679"/>
                    <exon start="81572" stop="81392"/>
                    <exon start="81303" stop="81215"/>
                    <exon start="81107" stop="81020"/>
                    <exon start="80917" stop="80693"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMTVIRTNSFKGTESETITKPKKNSINVTNCEPLKLMLHTTLSFKNLVQVQDSVVALPEPALMFSPRPVCELDAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNVEKPETAVSRWARARTRAAKVGKGLSKDEKAQKLALQHWLEAIDPRHRYGHNLHFYYDLWFLSESSQPFFYWLDVGDGKEINLEKCPRTKLHHQCIKYLGPKERESYEVVIENGKLVYKQSGVSVKSVEGSKSIFVLSTTRTLYVGQKQKGTFQHSSFLSGGAITAAGRLVAHSGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 34 chains have been computed
$ 
$ memory statistics:
$ 113448 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 22689 bytes was the average size of a spliced alignment
$ 9688 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2422 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 02:47:57
-->
