<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:25:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452179" ref_strand="+" ref_description="SGN-E452179 [cSTS-15-L20]">
      <seq>gatctgttcattgattcatacatttgcagtattagatttgcctttttgtagaaagctcaataatcatggtgtccacttctaagatcaaatccgttgacttttacaggaaaattcctcgagatttgacagaggcatcattatctggtgctggattgtccatcgtagcagcactttccatgatgtttctatttggaatggaactaaataactatttgacagtgagcaccaccacatctgttgttgttgataagagttctgatgcggaattcttacgaattgattttaatatgagtttcccggcattgtcttgtgaatttgcatcagtggatgtgagtgacgtcttaggaacaaataggttgaacataaccaaaacagtacgcaagcattccattgacaaaaacttgagacctactggctctgagttccattcaggctcaactgcaacagaactcaaacatgatgcggaagatgatgaggaatatggtgaaggatctgtttccttaaatggacatagttttgatagagttactcaccattacccaattttggttgtaaatttctttgctccttggtgctattggagcacccggctgaaaccttcatgggagaaagcagccaatattataagagagagatatgaccgagaatcggatgggcgtattcttgtggcaaaagttgattgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="4873" stop="314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4573" g_stop="4467" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4466" i_stop="4375" i_length="92">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4374" g_stop="4284" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="197" r_length="91" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4283" i_stop="4098" i_length="186">
            <donor d_prob="0.935" d_score="0.94"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4097" g_stop="4003" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="292" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4002" i_stop="3580" i_length="423">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3579" g_stop="3522" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="350" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3521" i_stop="2504" i_length="1018">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2503" g_stop="2319" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="535" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2318" i_stop="2229" i_length="90">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.655" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2228" g_stop="2171" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="593" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2170" i_stop="847" i_length="1324">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="846" g_stop="806" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="634" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="805" i_stop="666" i_length="140">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="665" g_stop="614" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="686" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E452179" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4573" e_stop="4467"/>
          <exon e_start="4374" e_stop="4284"/>
          <exon e_start="4097" e_stop="4003"/>
          <exon e_start="3579" e_stop="3522"/>
          <exon e_start="2503" e_stop="2319"/>
          <exon e_start="2228" e_stop="2171"/>
          <exon e_start="846" e_stop="806"/>
          <exon e_start="665" e_stop="614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTTAGTTGATTCATACATTAGCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAGGTTTCTTCTCGTTTTTTCAATTTTTTTTGCTCGCGTTTGTGTGTTTTTGTTGTTTAGATTGTTGTATAGACTTGTTTTATTGTTTATTGCAGGAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATGGTTAGAACTCAAAAAATTTCACATTCACTAGTGAATTAAGTTCAATTGTTGAAGCAAAATCTCTACTAGCTTAAGATAGATATGTAATCCTAAATTATGCTGCAGTTACATCGGTATTGTTACATTTGGTTTTGAGTCATGTAATCAGAAGTAATGGTGATTGGTGATTGTGTTTATTACTTGTAGGAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAGGTAAGATTCTGAAACATTTAGGGAAGGATATTCAATTTCCTTTTTTTTTTCTGTAATACCGTCTACTTGATGCATATGCCAAAGAGATATTATCCATCTCTAAGATGGATTCACTTTTGTTTAACATTCTTTCATAAGTGTTTTTTGTTAACCACAAATGATGAGATTATATGTGAAAAGAAGTAAAACTGGGTGATAGCAAGCAGTTGATTACATATTAATGAAGCACTTTGCTGGAATTTTTTTATGTCAGCATTGATACAACTGTTTGGGAGTCTTTCTTGTTTCTGTTCAGATTGTTTCAGATGTCTCATGTTTTCTCATTTGATTTTCAAGTCATGTGTTCCCTTCTATGATGTTGTATTAACCATGCAAGCCATTTCTTTCAGTTTGTCCATAACACTTGCTAAACTTGTGTTGCAGTTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGATGTCTTAGGAACAGTAAGTTTCAACTTGTTTCCTATGGACTCTAGAATGTGGTGGTAAAAAACGCCTAAAATAATTTTCTCTATCTAGAAATTTAGTTAAGAACTTCTTATGAGGCACTTGTTTAGAATACCTATTCAATTTTTGAAAATATTTCCTGTTCAATTATGCTGTGTGTTTCATTTGTTCTTGATCCGTATCTAGTCTATTGTCCTTGGTGACTGAAACAATGTGTTCCTTTCACATTGGCTATTTCTACTTGCATCGTGCTCATAAAAGGAAGGTGGGGGGTTACTGGAGCATGATCACCAATTGAACTTCTGTAGGGGAACATGCAGCTGTTCTCCATTTAGGCATGATCCTAGCTAACGAACTGCCTTAGTAGAATATAACTTTTTTTAGACTTGCCAATAGGCAAGGTGCAACTAGTTCTGTAAAGTGGGTTGTCCCCTCCAGCTGGTGCTTTAAAGTCCATTATTATATATTAACCTTTTATAACTCAGTTTTTAGGATTGAGGTGGTCTTTGGGGCTCTATACTTCTAGGAGCTATTCTCTTGTATTTGTTGTATGCTGCACTTCTTCTTTCTCCTTAATGCTTGGCCCTAGTGGGAGGTGTCGGATGAGTAGTGTACTTTTTTTTTTGATAAATATGAGTAGTGTACTTTTAATTACTCAATACACTTATTTTCCAGAGATAGTTTTGGAATCAATACAATTCTTGTTTGAAAGGCTGTGGATATTCATGAAGAAGAGATTTTCTTAGGGCCCACAGGGGATATGTATCTTATGTTGATATTCCGCAATTAGTGTTCAAAAATATGTTCTCATTACTGGTCAGTTGTGACATTATTGATTATCCTGCTACAAATCGCCTAGTGAACTGACTATTGACAAATGATGCAAAATTGTCCCTATGATTCTAGTTGTGCATATATGTCATAACATCATGCAGTTTGATGTTAAGCCATTAGCTTTTGTTTCTCCCAATTTTTTTTAGTGTTTAACAGATTTGTACATGTTAATTAATCTCAGAATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGAGACCTACTGGCTCGGAGTTCCATTCAGGCTCAACTGCAACAGAACTCAAACATGATGCGGAAGATGATGAGGAATATGGTGAAGGGTCTGTTTCCTTAAATGGACACAGTTTTGATAGAGTTACTCACCAGTGAGTTATTAGCTATATACTAGTCATCTGTTTTCACTCCATTAATGTTCATCTCTTTATCCTTATACTTATCAACACTCTTTTTTGCAGTTTCCCAATTTTGGTTGTAAATTTCTTCGCTCCTTGGTGCTATTGGAGCAACCGGCTGGTATTTATCTATTCAACCAAACTGCTACATTCCTCACTTCTTGTTTCTGGTGTTAGGCTAAGTTAAACAGAAAGTCTTTAAGATATATATGACTTGCTTTGCTACCAAGAAGTGTGAATTTGTTGTCTGAGGATGGGTTATTGATGTCCTATCTTTCTCATAGTGATCTGGAAACAGGATAATTGAGGGGTTTGTGTATCAATATGCACTTACCAGTGTCCTACTTCTAATAGCTAATAAGAATCGGGGCAAAAAGATAGCGTACTACTTTTAATAGCTAATAAGAATGGAAACCAGATTATATAATTAGATATACAGTAGCTTTACTAGCTATAGTTTAATAAAACCTCTTAGATCTGGCAGTTATCTATGATAGGAAAGTAGTTAAGCAATGTGTTTATAGCTAAAATGAAGAACTCTAATTTTATGACTCTTTAAGTCCTAATTTCTATCCCCAGAAAGTATGAACAAAGGATTCCTATAGTCCTAAATTAGAAGCAACCTAAAATTCTAAGAGTAACCTCCTCATAATGGGGAATTAAATAAGGGAACCACCAGCGAAGGAAACAAAGTATACAGGCTGGATTCTGCTGAGTCTAATATCTACGACTGAATAAAGAAATGAGAGAGAAAATTTTAGTCTTGGTTACTTACAGTTTTTTTTTCTGTATCTGGTGGACATGTTCAAAGAATGCTCAACAAGAAGTATTTATGCTAATTTAGAAAAGTACTACACTAACAACATACCCAGTGAAAGGACTCCAAGATGCTTTGTAGCTCAGACTCTTCTAAAATGTTGCAGCTTCCATGGCGGATCCTTAAAAAATTTACTACTTTTGGAGGATAGTCGACATTTTGAAGAGTCTGAGCAACATAGCCAAGATGTGAGATATCCTAATAGAATGAACACAGAGCATTTTCTCTCAGCTGAGAGAACTCCAAGATGTGCGATCATCAGAGGAAAAAAGATGAAAAAAGGGAAGCAACTTATGTTTAGATGGGGTTTCAACTCAAATATGTTCTCTTAAGGCTATTGTTTGGTTAACCTCTGCTAACCTTTCCCATGTAGACAGATTAGACACCTTTCTGGATTTTGTCATGTTTTTAATTCTATAAGTTTTTGTGTATTCTGAGCTGAGAAATCCTCTTTTGTTGTAATCTTTGCATCCACTGGATGCTTTTAATGACAATTTACTTCATCAAAAAAAGAAAAAAATATAGTTGACCGATGGATTGATTTTCCATAGAACCCCTGCTCCCTCTAGAATAGCTTATTTTCTTTTTCTTTTTCTTTTTTCTGAAAATAATTTTCCTGTTGTCTCAGAAACCTTCATGGGAGAAAGCAGCCAATATTATAAGAGAGAGGTCCTCTTTGTTGCGTTTATACTTATTACAGCTTCTACTTGAAACAGTATATGCTGAACTCCATCTCATGTCCGAATGGAGTTTCTAGCAATTCCCTGCTGATATGCTGATTCTAGCTTTCATTTTGCAATCATTTTCAGATATGACCGGGAATCGGATGGGCGTATTCTTGTGGCAAAAGTTGATTGCACT</genome_strand>
        <mrna_strand>GATCTGTTCATTGATTCATACATTTGCAGTATTAGATTTGCC-TTTTTGTAGAAAGCTCAATAATCATGGTGTCCACTTCTAAGATCAAATCCGTTGACTTTTACAG............................................................................................GAAAATTCCTCGAGATTTGACAGAGGCATCATTATCTGGTGCTGGATTGTCCATCGTAGCAGCACTTTCCATGATGTTTCTATTTGGAATG..........................................................................................................................................................................................GAACTAAATAACTATTTGACAGTGAGCACCACCACATCTGTTGTTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGACGTCTTAGGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGAGACCTACTGGCTCTGAGTTCCATTCAGGCTCAACTGCAACAGAACTCAAACATGATGCGGAAGATGATGAGGAATATGGTGAAGGATCTGTTTCCTTAAATGGACATAGTTTTGATAGAGTTACTCACCA..........................................................................................TTACCCAATTTTGGTTGTAAATTTCTTTGCTCCTTGGTGCTATTGGAGCACCCGGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTTCATGGGAGAAAGCAGCCAATATTATAAGAGAGAG............................................................................................................................................ATATGACCGAGAATCGGATGGGCGTATTCTTGTGGCAAAAGTTGATTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460998" ref_strand="+" ref_description="SGN-E460998 [cPRO-34-A21]">
      <seq>ctctcccgcagatacagctgaatcctcccaattctcgagacatctataagaaattccattgaaattcagcatttctatctgtttttcttcgtcggagattttgcagatctgttcgttgattcatacatttgcagtattagctttgccgtttttgtagaaagctcaataatcatggtgtccacttctaagatcaaatccgttgacttttacaggaaaatccctcgagatttgacagaggcatcattatctggtgctggattgtccatcgtagcagcactttccatgatgtttctctttggaatggaactaaataactatttgacagtgagcaccaccacatctgttgttgttgataagagttctgatgcggaattcttacgaattgattttaatatgagtttcccggcattgtcttgtgaatttgcatcagtggatgtgagtgacgtcttaggaacaaataggttgaacataaccaaaacagtacgcaagcattccattgacaaaaacttgagacctactggctctgagttccattcaggtgcaactgcaacagaactcaaacatgatgcggaagatgatgaggagtatggtgaaggatctgtttccttaaatggacacagttttgatagagttactcaccattacccaattttggttgtaaatttctttgctccttggtgctattggagcacccggctgaaaccttcatgggagaaagcagccaatattataagagagagatatgaccgagaatcggatgggcgtattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="4969" stop="335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4628" g_stop="4467" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="212" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4466" i_stop="4375" i_length="92">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4374" g_stop="4284" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="303" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4283" i_stop="4098" i_length="186">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4097" g_stop="4003" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="398" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4002" i_stop="3580" i_length="423">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3579" g_stop="3522" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="456" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3521" i_stop="2504" i_length="1018">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2503" g_stop="2319" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="641" r_length="185" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2318" i_stop="2229" i_length="90">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.655" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2228" g_stop="2171" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="699" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2170" i_stop="847" i_length="1324">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="846" g_stop="806" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="740" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="805" i_stop="666" i_length="140">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="665" g_stop="635" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="771" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E460998" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4628" e_stop="4467"/>
          <exon e_start="4374" e_stop="4284"/>
          <exon e_start="4097" e_stop="4003"/>
          <exon e_start="3579" e_stop="3522"/>
          <exon e_start="2503" e_stop="2319"/>
          <exon e_start="2228" e_stop="2171"/>
          <exon e_start="846" e_stop="806"/>
          <exon e_start="665" e_stop="635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCGTTGATATTCAGCATTTCTATCAGTTTTTCTTCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTAGCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAGGTTTCTTCTCGTTTTTTCAATTTTTTTTGCTCGCGTTTGTGTGTTTTTGTTGTTTAGATTGTTGTATAGACTTGTTTTATTGTTTATTGCAGGAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATGGTTAGAACTCAAAAAATTTCACATTCACTAGTGAATTAAGTTCAATTGTTGAAGCAAAATCTCTACTAGCTTAAGATAGATATGTAATCCTAAATTATGCTGCAGTTACATCGGTATTGTTACATTTGGTTTTGAGTCATGTAATCAGAAGTAATGGTGATTGGTGATTGTGTTTATTACTTGTAGGAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAGGTAAGATTCTGAAACATTTAGGGAAGGATATTCAATTTCCTTTTTTTTTTCTGTAATACCGTCTACTTGATGCATATGCCAAAGAGATATTATCCATCTCTAAGATGGATTCACTTTTGTTTAACATTCTTTCATAAGTGTTTTTTGTTAACCACAAATGATGAGATTATATGTGAAAAGAAGTAAAACTGGGTGATAGCAAGCAGTTGATTACATATTAATGAAGCACTTTGCTGGAATTTTTTTATGTCAGCATTGATACAACTGTTTGGGAGTCTTTCTTGTTTCTGTTCAGATTGTTTCAGATGTCTCATGTTTTCTCATTTGATTTTCAAGTCATGTGTTCCCTTCTATGATGTTGTATTAACCATGCAAGCCATTTCTTTCAGTTTGTCCATAACACTTGCTAAACTTGTGTTGCAGTTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGATGTCTTAGGAACAGTAAGTTTCAACTTGTTTCCTATGGACTCTAGAATGTGGTGGTAAAAAACGCCTAAAATAATTTTCTCTATCTAGAAATTTAGTTAAGAACTTCTTATGAGGCACTTGTTTAGAATACCTATTCAATTTTTGAAAATATTTCCTGTTCAATTATGCTGTGTGTTTCATTTGTTCTTGATCCGTATCTAGTCTATTGTCCTTGGTGACTGAAACAATGTGTTCCTTTCACATTGGCTATTTCTACTTGCATCGTGCTCATAAAAGGAAGGTGGGGGGTTACTGGAGCATGATCACCAATTGAACTTCTGTAGGGGAACATGCAGCTGTTCTCCATTTAGGCATGATCCTAGCTAACGAACTGCCTTAGTAGAATATAACTTTTTTTAGACTTGCCAATAGGCAAGGTGCAACTAGTTCTGTAAAGTGGGTTGTCCCCTCCAGCTGGTGCTTTAAAGTCCATTATTATATATTAACCTTTTATAACTCAGTTTTTAGGATTGAGGTGGTCTTTGGGGCTCTATACTTCTAGGAGCTATTCTCTTGTATTTGTTGTATGCTGCACTTCTTCTTTCTCCTTAATGCTTGGCCCTAGTGGGAGGTGTCGGATGAGTAGTGTACTTTTTTTTTTGATAAATATGAGTAGTGTACTTTTAATTACTCAATACACTTATTTTCCAGAGATAGTTTTGGAATCAATACAATTCTTGTTTGAAAGGCTGTGGATATTCATGAAGAAGAGATTTTCTTAGGGCCCACAGGGGATATGTATCTTATGTTGATATTCCGCAATTAGTGTTCAAAAATATGTTCTCATTACTGGTCAGTTGTGACATTATTGATTATCCTGCTACAAATCGCCTAGTGAACTGACTATTGACAAATGATGCAAAATTGTCCCTATGATTCTAGTTGTGCATATATGTCATAACATCATGCAGTTTGATGTTAAGCCATTAGCTTTTGTTTCTCCCAATTTTTTTTAGTGTTTAACAGATTTGTACATGTTAATTAATCTCAGAATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGAGACCTACTGGCTCGGAGTTCCATTCAGGCTCAACTGCAACAGAACTCAAACATGATGCGGAAGATGATGAGGAATATGGTGAAGGGTCTGTTTCCTTAAATGGACACAGTTTTGATAGAGTTACTCACCAGTGAGTTATTAGCTATATACTAGTCATCTGTTTTCACTCCATTAATGTTCATCTCTTTATCCTTATACTTATCAACACTCTTTTTTGCAGTTTCCCAATTTTGGTTGTAAATTTCTTCGCTCCTTGGTGCTATTGGAGCAACCGGCTGGTATTTATCTATTCAACCAAACTGCTACATTCCTCACTTCTTGTTTCTGGTGTTAGGCTAAGTTAAACAGAAAGTCTTTAAGATATATATGACTTGCTTTGCTACCAAGAAGTGTGAATTTGTTGTCTGAGGATGGGTTATTGATGTCCTATCTTTCTCATAGTGATCTGGAAACAGGATAATTGAGGGGTTTGTGTATCAATATGCACTTACCAGTGTCCTACTTCTAATAGCTAATAAGAATCGGGGCAAAAAGATAGCGTACTACTTTTAATAGCTAATAAGAATGGAAACCAGATTATATAATTAGATATACAGTAGCTTTACTAGCTATAGTTTAATAAAACCTCTTAGATCTGGCAGTTATCTATGATAGGAAAGTAGTTAAGCAATGTGTTTATAGCTAAAATGAAGAACTCTAATTTTATGACTCTTTAAGTCCTAATTTCTATCCCCAGAAAGTATGAACAAAGGATTCCTATAGTCCTAAATTAGAAGCAACCTAAAATTCTAAGAGTAACCTCCTCATAATGGGGAATTAAATAAGGGAACCACCAGCGAAGGAAACAAAGTATACAGGCTGGATTCTGCTGAGTCTAATATCTACGACTGAATAAAGAAATGAGAGAGAAAATTTTAGTCTTGGTTACTTACAGTTTTTTTTTCTGTATCTGGTGGACATGTTCAAAGAATGCTCAACAAGAAGTATTTATGCTAATTTAGAAAAGTACTACACTAACAACATACCCAGTGAAAGGACTCCAAGATGCTTTGTAGCTCAGACTCTTCTAAAATGTTGCAGCTTCCATGGCGGATCCTTAAAAAATTTACTACTTTTGGAGGATAGTCGACATTTTGAAGAGTCTGAGCAACATAGCCAAGATGTGAGATATCCTAATAGAATGAACACAGAGCATTTTCTCTCAGCTGAGAGAACTCCAAGATGTGCGATCATCAGAGGAAAAAAGATGAAAAAAGGGAAGCAACTTATGTTTAGATGGGGTTTCAACTCAAATATGTTCTCTTAAGGCTATTGTTTGGTTAACCTCTGCTAACCTTTCCCATGTAGACAGATTAGACACCTTTCTGGATTTTGTCATGTTTTTAATTCTATAAGTTTTTGTGTATTCTGAGCTGAGAAATCCTCTTTTGTTGTAATCTTTGCATCCACTGGATGCTTTTAATGACAATTTACTTCATCAAAAAAAGAAAAAAATATAGTTGACCGATGGATTGATTTTCCATAGAACCCCTGCTCCCTCTAGAATAGCTTATTTTCTTTTTCTTTTTCTTTTTTCTGAAAATAATTTTCCTGTTGTCTCAGAAACCTTCATGGGAGAAAGCAGCCAATATTATAAGAGAGAGGTCCTCTTTGTTGCGTTTATACTTATTACAGCTTCTACTTGAAACAGTATATGCTGAACTCCATCTCATGTCCGAATGGAGTTTCTAGCAATTCCCTGCTGATATGCTGATTCTAGCTTTCATTTTGCAATCATTTTCAGATATGACCGGGAATCGGATGGGCGTATTCTT</genome_strand>
        <mrna_strand>AAATTCCATTGAAATTCAGCATTTCTATCTGTTTTTCTTCGTCGGAGATTTTGCAGATCTGTTCGTTGATTCATACATTTGCAGTATTAGCTTTGCCGTTTTTGTAGAAAGCTCAATAATCATGGTGTCCACTTCTAAGATCAAATCCGTTGACTTTTACAG............................................................................................GAAAATCCCTCGAGATTTGACAGAGGCATCATTATCTGGTGCTGGATTGTCCATCGTAGCAGCACTTTCCATGATGTTTCTCTTTGGAATG..........................................................................................................................................................................................GAACTAAATAACTATTTGACAGTGAGCACCACCACATCTGTTGTTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGACGTCTTAGGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGAGACCTACTGGCTCTGAGTTCCATTCAGGTGCAACTGCAACAGAACTCAAACATGATGCGGAAGATGATGAGGAGTATGGTGAAGGATCTGTTTCCTTAAATGGACACAGTTTTGATAGAGTTACTCACCA..........................................................................................TTACCCAATTTTGGTTGTAAATTTCTTTGCTCCTTGGTGCTATTGGAGCACCCGGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTTCATGGGAGAAAGCAGCCAATATTATAAGAGAGAG............................................................................................................................................ATATGACCGAGAATCGGATGGGCGTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323608" ref_strand="+" ref_description="SGN-E323608 [cTOC-2-F2]">
      <seq>ggaactacacacataaactctcccgcagatacagctgaatcctcccaattctcgagacaaattccgttgatattcagcatttctatcagtttttcttcgtcggagattttgcagatctgttagttgattcatacattagcagtattagctttgccgtttttgtggaaagctcaataatcatggtgtccacgtctaagatcaaatccgttgacttttacaggaaaatacctcgagatttgactgaggcatcattatctggtgctggattgtccattgtagcagcactttgcatgatgtttctctttggaatggaactaaataactatttgacagtgagcactaccacatctgttattgttgataagagttctgatgcggaattcttacgaattgattttaatatgagtttcccggcattgtcttgtgaatttgcatcagtggatgtgagtgatgtcttaggaacaaataggttgaacataaccaaaacagtacgcaagcattccattgacaaaaacttgagacctactggctcggagttccattcaggctcaactgcaacagaactcaaacatgatgcggaagatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="4986" stop="2079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4686" g_stop="4467" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4466" i_stop="4375" i_length="92">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4374" g_stop="4284" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="311" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4283" i_stop="4098" i_length="186">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4097" g_stop="4003" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="406" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4002" i_stop="3580" i_length="423">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3579" g_stop="3522" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3521" i_stop="2504" i_length="1018">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2503" g_stop="2379" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="589" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E323608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4686" e_stop="4467"/>
          <exon e_start="4374" e_stop="4284"/>
          <exon e_start="4097" e_stop="4003"/>
          <exon e_start="3579" e_stop="3522"/>
          <exon e_start="2503" e_stop="2379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTACACACATAAACTCTCCCGCAGATACAGCTGAATCCTCCCAATTCTCGAGACAAATTCCGTTGATATTCAGCATTTCTATCAGTTTTTCTTCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTAGCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAGGTTTCTTCTCGTTTTTTCAATTTTTTTTGCTCGCGTTTGTGTGTTTTTGTTGTTTAGATTGTTGTATAGACTTGTTTTATTGTTTATTGCAGGAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATGGTTAGAACTCAAAAAATTTCACATTCACTAGTGAATTAAGTTCAATTGTTGAAGCAAAATCTCTACTAGCTTAAGATAGATATGTAATCCTAAATTATGCTGCAGTTACATCGGTATTGTTACATTTGGTTTTGAGTCATGTAATCAGAAGTAATGGTGATTGGTGATTGTGTTTATTACTTGTAGGAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAGGTAAGATTCTGAAACATTTAGGGAAGGATATTCAATTTCCTTTTTTTTTTCTGTAATACCGTCTACTTGATGCATATGCCAAAGAGATATTATCCATCTCTAAGATGGATTCACTTTTGTTTAACATTCTTTCATAAGTGTTTTTTGTTAACCACAAATGATGAGATTATATGTGAAAAGAAGTAAAACTGGGTGATAGCAAGCAGTTGATTACATATTAATGAAGCACTTTGCTGGAATTTTTTTATGTCAGCATTGATACAACTGTTTGGGAGTCTTTCTTGTTTCTGTTCAGATTGTTTCAGATGTCTCATGTTTTCTCATTTGATTTTCAAGTCATGTGTTCCCTTCTATGATGTTGTATTAACCATGCAAGCCATTTCTTTCAGTTTGTCCATAACACTTGCTAAACTTGTGTTGCAGTTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGATGTCTTAGGAACAGTAAGTTTCAACTTGTTTCCTATGGACTCTAGAATGTGGTGGTAAAAAACGCCTAAAATAATTTTCTCTATCTAGAAATTTAGTTAAGAACTTCTTATGAGGCACTTGTTTAGAATACCTATTCAATTTTTGAAAATATTTCCTGTTCAATTATGCTGTGTGTTTCATTTGTTCTTGATCCGTATCTAGTCTATTGTCCTTGGTGACTGAAACAATGTGTTCCTTTCACATTGGCTATTTCTACTTGCATCGTGCTCATAAAAGGAAGGTGGGGGGTTACTGGAGCATGATCACCAATTGAACTTCTGTAGGGGAACATGCAGCTGTTCTCCATTTAGGCATGATCCTAGCTAACGAACTGCCTTAGTAGAATATAACTTTTTTTAGACTTGCCAATAGGCAAGGTGCAACTAGTTCTGTAAAGTGGGTTGTCCCCTCCAGCTGGTGCTTTAAAGTCCATTATTATATATTAACCTTTTATAACTCAGTTTTTAGGATTGAGGTGGTCTTTGGGGCTCTATACTTCTAGGAGCTATTCTCTTGTATTTGTTGTATGCTGCACTTCTTCTTTCTCCTTAATGCTTGGCCCTAGTGGGAGGTGTCGGATGAGTAGTGTACTTTTTTTTTTGATAAATATGAGTAGTGTACTTTTAATTACTCAATACACTTATTTTCCAGAGATAGTTTTGGAATCAATACAATTCTTGTTTGAAAGGCTGTGGATATTCATGAAGAAGAGATTTTCTTAGGGCCCACAGGGGATATGTATCTTATGTTGATATTCCGCAATTAGTGTTCAAAAATATGTTCTCATTACTGGTCAGTTGTGACATTATTGATTATCCTGCTACAAATCGCCTAGTGAACTGACTATTGACAAATGATGCAAAATTGTCCCTATGATTCTAGTTGTGCATATATGTCATAACATCATGCAGTTTGATGTTAAGCCATTAGCTTTTGTTTCTCCCAATTTTTTTTAGTGTTTAACAGATTTGTACATGTTAATTAATCTCAGAATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGAGACCTACTGGCTCGGAGTTCCATTCAGGCTCAACTGCAACAGAACTCAAACATGATGCGGAAGATGATGA</genome_strand>
        <mrna_strand>GGAACTACACACATAAACTCTCCCGCAGATACAGCTGAATCCTCCCAATTCTCGAGACAAATTCCGTTGATATTCAGCATTTCTATCAGTTTTTCTTCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTAGCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAG............................................................................................GAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATG..........................................................................................................................................................................................GAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGATGTCTTAGGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGAGACCTACTGGCTCGGAGTTCCATTCAGGCTCAACTGCAACAGAACTCAAACATGATGCGGAAGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305482" ref_strand="+" ref_description="SGN-E305482 [cLEX-15-B22]">
      <seq>atatacagtgctggtaccgcttgaaacgcctgcgggaactacacacataaactctcccgcagatacagctgaatcctcccaattctcgagacaaattccgttgatattcagcatttctatcagtttttcttcgtcggagattttgcagatctgttagttgattcatacattagcagtattagctttgccgtttttgtggaaagctcaataatcatggtgtccacgtctaagatcaaatccgttgacttttacaggaaaatacctcgagatttgactgaggcatcattatctggtgctggattgtccattgtagcagcactttgcatgatgtttctctttggaatggaactaaataactatttgacagtgagcactaccacatctgttattgttgataagagttctgatgcggaattcttacgaattgattttaatatgagtttcccggcattgtcttgtgaatttgcatcagtggatgtgagtgatgtcttangaacaaataggttgaacataaccaaaacagtacgcaagcattccattgacaaaaacttgagacctactggctcggagttccattcaggctcaactgcaacagaactcaaacatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="5020" stop="2091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4720" g_stop="4467" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4466" i_stop="4375" i_length="92">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4374" g_stop="4284" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="345" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4283" i_stop="4098" i_length="186">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4097" g_stop="4003" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="440" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4002" i_stop="3580" i_length="423">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3579" g_stop="3522" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="498" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3521" i_stop="2504" i_length="1018">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2503" g_stop="2391" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="611" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E305482" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4720" e_stop="4467"/>
          <exon e_start="4374" e_stop="4284"/>
          <exon e_start="4097" e_stop="4003"/>
          <exon e_start="3579" e_stop="3522"/>
          <exon e_start="2503" e_stop="2391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACAGTGCTGGTACCGCTTGAAACGCCTGCGGGAACTACACACATAAACTCTCCCGCAGATACAGCTGAATCCTCCCAATTCTCGAGACAAATTCCGTTGATATTCAGCATTTCTATCAGTTTTTCTTCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTAGCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAGGTTTCTTCTCGTTTTTTCAATTTTTTTTGCTCGCGTTTGTGTGTTTTTGTTGTTTAGATTGTTGTATAGACTTGTTTTATTGTTTATTGCAGGAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATGGTTAGAACTCAAAAAATTTCACATTCACTAGTGAATTAAGTTCAATTGTTGAAGCAAAATCTCTACTAGCTTAAGATAGATATGTAATCCTAAATTATGCTGCAGTTACATCGGTATTGTTACATTTGGTTTTGAGTCATGTAATCAGAAGTAATGGTGATTGGTGATTGTGTTTATTACTTGTAGGAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAGGTAAGATTCTGAAACATTTAGGGAAGGATATTCAATTTCCTTTTTTTTTTCTGTAATACCGTCTACTTGATGCATATGCCAAAGAGATATTATCCATCTCTAAGATGGATTCACTTTTGTTTAACATTCTTTCATAAGTGTTTTTTGTTAACCACAAATGATGAGATTATATGTGAAAAGAAGTAAAACTGGGTGATAGCAAGCAGTTGATTACATATTAATGAAGCACTTTGCTGGAATTTTTTTATGTCAGCATTGATACAACTGTTTGGGAGTCTTTCTTGTTTCTGTTCAGATTGTTTCAGATGTCTCATGTTTTCTCATTTGATTTTCAAGTCATGTGTTCCCTTCTATGATGTTGTATTAACCATGCAAGCCATTTCTTTCAGTTTGTCCATAACACTTGCTAAACTTGTGTTGCAGTTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGATGTCTTAGGAACAGTAAGTTTCAACTTGTTTCCTATGGACTCTAGAATGTGGTGGTAAAAAACGCCTAAAATAATTTTCTCTATCTAGAAATTTAGTTAAGAACTTCTTATGAGGCACTTGTTTAGAATACCTATTCAATTTTTGAAAATATTTCCTGTTCAATTATGCTGTGTGTTTCATTTGTTCTTGATCCGTATCTAGTCTATTGTCCTTGGTGACTGAAACAATGTGTTCCTTTCACATTGGCTATTTCTACTTGCATCGTGCTCATAAAAGGAAGGTGGGGGGTTACTGGAGCATGATCACCAATTGAACTTCTGTAGGGGAACATGCAGCTGTTCTCCATTTAGGCATGATCCTAGCTAACGAACTGCCTTAGTAGAATATAACTTTTTTTAGACTTGCCAATAGGCAAGGTGCAACTAGTTCTGTAAAGTGGGTTGTCCCCTCCAGCTGGTGCTTTAAAGTCCATTATTATATATTAACCTTTTATAACTCAGTTTTTAGGATTGAGGTGGTCTTTGGGGCTCTATACTTCTAGGAGCTATTCTCTTGTATTTGTTGTATGCTGCACTTCTTCTTTCTCCTTAATGCTTGGCCCTAGTGGGAGGTGTCGGATGAGTAGTGTACTTTTTTTTTTGATAAATATGAGTAGTGTACTTTTAATTACTCAATACACTTATTTTCCAGAGATAGTTTTGGAATCAATACAATTCTTGTTTGAAAGGCTGTGGATATTCATGAAGAAGAGATTTTCTTAGGGCCCACAGGGGATATGTATCTTATGTTGATATTCCGCAATTAGTGTTCAAAAATATGTTCTCATTACTGGTCAGTTGTGACATTATTGATTATCCTGCTACAAATCGCCTAGTGAACTGACTATTGACAAATGATGCAAAATTGTCCCTATGATTCTAGTTGTGCATATATGTCATAACATCATGCAGTTTGATGTTAAGCCATTAGCTTTTGTTTCTCCCAATTTTTTTTAGTGTTTAACAGATTTGTACATGTTAATTAATCTCAGAATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGAGACCTACTGGCTCGGAGTTCCATTCAGGCTCAACTGCAACAGAACTCAAACATGATGC</genome_strand>
        <mrna_strand>ATATACAGTGCTGGTACCGCTTGAAACGCCTGCGGGAACTACACACATAAACTCTCCCGCAGATACAGCTGAATCCTCCCAATTCTCGAGACAAATTCCGTTGATATTCAGCATTTCTATCAGTTTTTCTTCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTAGCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAG............................................................................................GAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATG..........................................................................................................................................................................................GAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGATGTCTTANGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGAGACCTACTGGCTCGGAGTTCCATTCAGGCTCAACTGCAACAGAACTCAAACATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573105" ref_strand="+" ref_description="SGN-E573105 [32363]">
      <seq>tcgtcggagattttgcagatctgttagttgattcatacatttgcagtattagctttgccgtttttgtagaaagctcaataatcatggtgtccacttctaagatcaaatccgttgacttttattggaaaattccccgagatttgacagaggcatcattatctggtgctggattgtccatcgtagctgcactttccatgatgtttctctttggaatggaactaaataactatttgacagtgagcaccaccacatctgttgtcgttgataagagttctgatgcggaattcttacgaattgattttaatatgagtttcccggcattgtcttgtgaatttgcatcagtggatgtgagtgacgtcttaggaacaaataggttgaacataaccaaaacagtacgcaagcattccattgacaaaaacttgagacctactggctctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="4890" stop="2132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4590" g_stop="4467" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4466" i_stop="4375" i_length="92">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4374" g_stop="4284" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="215" r_length="91" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4283" i_stop="4098" i_length="186">
            <donor d_prob="0.935" d_score="0.94"/>
            <acceptor a_prob="0.942" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4097" g_stop="4003" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="310" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4002" i_stop="3580" i_length="423">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3579" g_stop="3522" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="368" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3521" i_stop="2504" i_length="1018">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2503" g_stop="2432" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="440" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E573105" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4590" e_stop="4467"/>
          <exon e_start="4374" e_stop="4284"/>
          <exon e_start="4097" e_stop="4003"/>
          <exon e_start="3579" e_stop="3522"/>
          <exon e_start="2503" e_stop="2432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTAGCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAGGTTTCTTCTCGTTTTTTCAATTTTTTTTGCTCGCGTTTGTGTGTTTTTGTTGTTTAGATTGTTGTATAGACTTGTTTTATTGTTTATTGCAGGAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATGGTTAGAACTCAAAAAATTTCACATTCACTAGTGAATTAAGTTCAATTGTTGAAGCAAAATCTCTACTAGCTTAAGATAGATATGTAATCCTAAATTATGCTGCAGTTACATCGGTATTGTTACATTTGGTTTTGAGTCATGTAATCAGAAGTAATGGTGATTGGTGATTGTGTTTATTACTTGTAGGAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAGGTAAGATTCTGAAACATTTAGGGAAGGATATTCAATTTCCTTTTTTTTTTCTGTAATACCGTCTACTTGATGCATATGCCAAAGAGATATTATCCATCTCTAAGATGGATTCACTTTTGTTTAACATTCTTTCATAAGTGTTTTTTGTTAACCACAAATGATGAGATTATATGTGAAAAGAAGTAAAACTGGGTGATAGCAAGCAGTTGATTACATATTAATGAAGCACTTTGCTGGAATTTTTTTATGTCAGCATTGATACAACTGTTTGGGAGTCTTTCTTGTTTCTGTTCAGATTGTTTCAGATGTCTCATGTTTTCTCATTTGATTTTCAAGTCATGTGTTCCCTTCTATGATGTTGTATTAACCATGCAAGCCATTTCTTTCAGTTTGTCCATAACACTTGCTAAACTTGTGTTGCAGTTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGATGTCTTAGGAACAGTAAGTTTCAACTTGTTTCCTATGGACTCTAGAATGTGGTGGTAAAAAACGCCTAAAATAATTTTCTCTATCTAGAAATTTAGTTAAGAACTTCTTATGAGGCACTTGTTTAGAATACCTATTCAATTTTTGAAAATATTTCCTGTTCAATTATGCTGTGTGTTTCATTTGTTCTTGATCCGTATCTAGTCTATTGTCCTTGGTGACTGAAACAATGTGTTCCTTTCACATTGGCTATTTCTACTTGCATCGTGCTCATAAAAGGAAGGTGGGGGGTTACTGGAGCATGATCACCAATTGAACTTCTGTAGGGGAACATGCAGCTGTTCTCCATTTAGGCATGATCCTAGCTAACGAACTGCCTTAGTAGAATATAACTTTTTTTAGACTTGCCAATAGGCAAGGTGCAACTAGTTCTGTAAAGTGGGTTGTCCCCTCCAGCTGGTGCTTTAAAGTCCATTATTATATATTAACCTTTTATAACTCAGTTTTTAGGATTGAGGTGGTCTTTGGGGCTCTATACTTCTAGGAGCTATTCTCTTGTATTTGTTGTATGCTGCACTTCTTCTTTCTCCTTAATGCTTGGCCCTAGTGGGAGGTGTCGGATGAGTAGTGTACTTTTTTTTTTGATAAATATGAGTAGTGTACTTTTAATTACTCAATACACTTATTTTCCAGAGATAGTTTTGGAATCAATACAATTCTTGTTTGAAAGGCTGTGGATATTCATGAAGAAGAGATTTTCTTAGGGCCCACAGGGGATATGTATCTTATGTTGATATTCCGCAATTAGTGTTCAAAAATATGTTCTCATTACTGGTCAGTTGTGACATTATTGATTATCCTGCTACAAATCGCCTAGTGAACTGACTATTGACAAATGATGCAAAATTGTCCCTATGATTCTAGTTGTGCATATATGTCATAACATCATGCAGTTTGATGTTAAGCCATTAGCTTTTGTTTCTCCCAATTTTTTTTAGTGTTTAACAGATTTGTACATGTTAATTAATCTCAGAATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGAGACCTACTGGCTCGGAG</genome_strand>
        <mrna_strand>TCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTTGCAGTATTAGCTTTGCCGTTTTTGTAGAAAGCTCAATAATCATGGTGTCCACTTCTAAGATCAAATCCGTTGACTTTTATTG............................................................................................GAAAATTCCCCGAGATTTGACAGAGGCATCATTATCTGGTGCTGGATTGTCCATCGTAGCTGCACTTTCCATGATGTTTCTCTTTGGAATG..........................................................................................................................................................................................GAACTAAATAACTATTTGACAGTGAGCACCACCACATCTGTTGTCGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGACGTCTTAGGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGAGACCTACTGGCTCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310385" ref_strand="+" ref_description="SGN-E310385 [cTOA-10-E6]">
      <seq>aaacgcctgcgggaactacacacataaactctcccgcagatacagctgaatcctcccaattctcgagacaaattccgttgatattcagcatttctatcagtttttcttcgtcggagattttgcagatctgttagttgattcatacattagcagtattagctttgccgtttttgtggaaagctcaataatcatggtgtccacgtctaagatcaaatccgttgacttttacaggaaaatacctcgagatttgactgaggcatcattatctggtgctggattgtccattgtagcagcactttgcatgatgtttctctttggaatggaactaaataactatttgacagtgagcactaccacatctgttattgttgataagagttctgatgcggaattcttacgaattgattttaatatgagtttcccggcattgtcttgtgaatttgcatcagtggatgtgagtgatgtcttaggaacaaataggttgaacataaccaaaacagtacgcaagcattccattgacaaaaacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="4997" stop="2149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4697" g_stop="4467" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4466" i_stop="4375" i_length="92">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4374" g_stop="4284" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="322" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4283" i_stop="4098" i_length="186">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4097" g_stop="4003" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="417" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4002" i_stop="3580" i_length="423">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3579" g_stop="3522" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="475" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3521" i_stop="2504" i_length="1018">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2503" g_stop="2449" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="530" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E310385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4697" e_stop="4467"/>
          <exon e_start="4374" e_stop="4284"/>
          <exon e_start="4097" e_stop="4003"/>
          <exon e_start="3579" e_stop="3522"/>
          <exon e_start="2503" e_stop="2449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCTGCGGGAACTACACACATAAACTCTCCCGCAGATACAGCTGAATCCTCCCAATTCTCGAGACAAATTCCGTTGATATTCAGCATTTCTATCAGTTTTTCTTCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTAGCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAGGTTTCTTCTCGTTTTTTCAATTTTTTTTGCTCGCGTTTGTGTGTTTTTGTTGTTTAGATTGTTGTATAGACTTGTTTTATTGTTTATTGCAGGAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATGGTTAGAACTCAAAAAATTTCACATTCACTAGTGAATTAAGTTCAATTGTTGAAGCAAAATCTCTACTAGCTTAAGATAGATATGTAATCCTAAATTATGCTGCAGTTACATCGGTATTGTTACATTTGGTTTTGAGTCATGTAATCAGAAGTAATGGTGATTGGTGATTGTGTTTATTACTTGTAGGAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAGGTAAGATTCTGAAACATTTAGGGAAGGATATTCAATTTCCTTTTTTTTTTCTGTAATACCGTCTACTTGATGCATATGCCAAAGAGATATTATCCATCTCTAAGATGGATTCACTTTTGTTTAACATTCTTTCATAAGTGTTTTTTGTTAACCACAAATGATGAGATTATATGTGAAAAGAAGTAAAACTGGGTGATAGCAAGCAGTTGATTACATATTAATGAAGCACTTTGCTGGAATTTTTTTATGTCAGCATTGATACAACTGTTTGGGAGTCTTTCTTGTTTCTGTTCAGATTGTTTCAGATGTCTCATGTTTTCTCATTTGATTTTCAAGTCATGTGTTCCCTTCTATGATGTTGTATTAACCATGCAAGCCATTTCTTTCAGTTTGTCCATAACACTTGCTAAACTTGTGTTGCAGTTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGATGTCTTAGGAACAGTAAGTTTCAACTTGTTTCCTATGGACTCTAGAATGTGGTGGTAAAAAACGCCTAAAATAATTTTCTCTATCTAGAAATTTAGTTAAGAACTTCTTATGAGGCACTTGTTTAGAATACCTATTCAATTTTTGAAAATATTTCCTGTTCAATTATGCTGTGTGTTTCATTTGTTCTTGATCCGTATCTAGTCTATTGTCCTTGGTGACTGAAACAATGTGTTCCTTTCACATTGGCTATTTCTACTTGCATCGTGCTCATAAAAGGAAGGTGGGGGGTTACTGGAGCATGATCACCAATTGAACTTCTGTAGGGGAACATGCAGCTGTTCTCCATTTAGGCATGATCCTAGCTAACGAACTGCCTTAGTAGAATATAACTTTTTTTAGACTTGCCAATAGGCAAGGTGCAACTAGTTCTGTAAAGTGGGTTGTCCCCTCCAGCTGGTGCTTTAAAGTCCATTATTATATATTAACCTTTTATAACTCAGTTTTTAGGATTGAGGTGGTCTTTGGGGCTCTATACTTCTAGGAGCTATTCTCTTGTATTTGTTGTATGCTGCACTTCTTCTTTCTCCTTAATGCTTGGCCCTAGTGGGAGGTGTCGGATGAGTAGTGTACTTTTTTTTTTGATAAATATGAGTAGTGTACTTTTAATTACTCAATACACTTATTTTCCAGAGATAGTTTTGGAATCAATACAATTCTTGTTTGAAAGGCTGTGGATATTCATGAAGAAGAGATTTTCTTAGGGCCCACAGGGGATATGTATCTTATGTTGATATTCCGCAATTAGTGTTCAAAAATATGTTCTCATTACTGGTCAGTTGTGACATTATTGATTATCCTGCTACAAATCGCCTAGTGAACTGACTATTGACAAATGATGCAAAATTGTCCCTATGATTCTAGTTGTGCATATATGTCATAACATCATGCAGTTTGATGTTAAGCCATTAGCTTTTGTTTCTCCCAATTTTTTTTAGTGTTTAACAGATTTGTACATGTTAATTAATCTCAGAATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGA</genome_strand>
        <mrna_strand>AAACGCCTGCGGGAACTACACACATAAACTCTCCCGCAGATACAGCTGAATCCTCCCAATTCTCGAGACAAATTCCGTTGATATTCAGCATTTCTATCAGTTTTTCTTCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTAGCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAG............................................................................................GAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATG..........................................................................................................................................................................................GAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGATGTCTTAGGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306589" ref_strand="+" ref_description="SGN-E306589 [cLEX-13-N2]">
      <seq>ttgaaacgcctgcgggaactattgacataaactctcccgcagatacaggggaatcctcccaattctcgagacaaattccgttgatattcagcatttctatcagtttttcttcgtcggagattttgcagatctgttagttgattcatacattatcagtattagctttgccgtttttgtggaaagctcaataatcatggtgtccacgtctaagatcaaatccgttgacttttacaggaaaatacctcgagatttgactgaggcatcattatctggtgctggattgtccattgtagcagcactttgcatgatgtttctctttggaatggaactaaataactatttgacagtgagcactaccacatctgttattgttgataagagttctgatgcggaattcttacgaattgattttaatatgagtttcccggccttgacttgtgaatttgcatcagtggatgtgagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="5000" stop="3234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4700" g_stop="4467" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4466" i_stop="4375" i_length="92">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4374" g_stop="4284" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="325" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4283" i_stop="4098" i_length="186">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4097" g_stop="4003" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="420" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4002" i_stop="3580" i_length="423">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3579" g_stop="3534" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="466" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E306589" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4700" e_stop="4467"/>
          <exon e_start="4374" e_stop="4284"/>
          <exon e_start="4097" e_stop="4003"/>
          <exon e_start="3579" e_stop="3534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAACGCCTGCGGGAACTACACACATAAACTCTCCCGCAGATACAGCTGAATCCTCCCAATTCTCGAGACAAATTCCGTTGATATTCAGCATTTCTATCAGTTTTTCTTCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTAGCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAGGTTTCTTCTCGTTTTTTCAATTTTTTTTGCTCGCGTTTGTGTGTTTTTGTTGTTTAGATTGTTGTATAGACTTGTTTTATTGTTTATTGCAGGAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATGGTTAGAACTCAAAAAATTTCACATTCACTAGTGAATTAAGTTCAATTGTTGAAGCAAAATCTCTACTAGCTTAAGATAGATATGTAATCCTAAATTATGCTGCAGTTACATCGGTATTGTTACATTTGGTTTTGAGTCATGTAATCAGAAGTAATGGTGATTGGTGATTGTGTTTATTACTTGTAGGAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAGGTAAGATTCTGAAACATTTAGGGAAGGATATTCAATTTCCTTTTTTTTTTCTGTAATACCGTCTACTTGATGCATATGCCAAAGAGATATTATCCATCTCTAAGATGGATTCACTTTTGTTTAACATTCTTTCATAAGTGTTTTTTGTTAACCACAAATGATGAGATTATATGTGAAAAGAAGTAAAACTGGGTGATAGCAAGCAGTTGATTACATATTAATGAAGCACTTTGCTGGAATTTTTTTATGTCAGCATTGATACAACTGTTTGGGAGTCTTTCTTGTTTCTGTTCAGATTGTTTCAGATGTCTCATGTTTTCTCATTTGATTTTCAAGTCATGTGTTCCCTTCTATGATGTTGTATTAACCATGCAAGCCATTTCTTTCAGTTTGTCCATAACACTTGCTAAACTTGTGTTGCAGTTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGAT</genome_strand>
        <mrna_strand>TTGAAACGCCTGCGGGAACTATTGACATAAACTCTCCCGCAGATACAGGGGAATCCTCCCAATTCTCGAGACAAATTCCGTTGATATTCAGCATTTCTATCAGTTTTTCTTCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTATCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAG............................................................................................GAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATG..........................................................................................................................................................................................GAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCGGCCTTGACTTGTGAATTTGCATCAGTGGATGTGAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419224" ref_strand="+" ref_description="SGN-E419224 [STM-29-O9]">
      <seq>cgggattgtcgtgctcagtacttctccgatgaccgaatttcgccggtaacggaggtcaccggtcgccgtggttccatatttattgtctacttttgctaccaaaagcttcagtctctgagttcgctttcctcaaatggccactatcgtctctaggagtaggtggcacacaattaacagcttcaaacggcatactgctttggaagtgcataaccccgaaggcggagaagataagatcagcaatttacatgattccattcttcttcacattctttcatatcttcctaccagagatgttgtgggcacatgtatactttcaacaaggtggaagtatctttggacttgtgttgaaaacattgactttgatgactcatttctctactcaagtagggtttttggttatccgatgaaggtcactagtttcatgcactttgttcacagatttcttcaacttcgagaagaatcagacataaaaaagtttcacctttcctgccgtgtttgcttcagtgcctctcatgtttgttcatggctttcaactgttattaggcataatgttcaagatcttgatctctgtctttttgtagaagaaccttttatgttgcctcaatgtgttttcagtagcaagacacttacttctctaaaacttgaaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="8185" stop="11961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8484" g_stop="8635" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8636" i_stop="11162" i_length="2527">
            <donor d_prob="0.989" d_score="0.88"/>
            <acceptor a_prob="0.940" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11163" g_stop="11661" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="651" r_length="499" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E419224" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8484" e_stop="8635"/>
          <exon e_start="11163" e_stop="11661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATGGTCGTGTTCAGTACTTCTCCGATGATCAAATTTCGCCGGTAACGAAGGTTACAGGTCGCCGTGGTTCCATATTTACTGTCTACTTTTGCAACCAAAAGCTTCGGTCTCCGAGTTCTCTTTCCTCAAATGGTCACTGTCGTTTCTAGTGAGCTCCTTTTCACTTATCTTCTTTAGTGTATCGTAACCTCTTTCGGTTTCCGTTTTGTGGTTATGGCTTCTGATGTCGTTGATGTATCAAACGTAGTTAATATTTATCTTTTGGTATTGTCACTTTATTCGATTTTTTTTTGGGTGTAAAATCTCTTTTTGTTTTGACACTTTTTTATTTTGGTTTCTCTTTGTGTACATATAGTTATCAGTAGTATTATCACTGTTCTCGTAGTTTTTTGTTATTATCGATTGCTTTCAGTGCTTAGGGTTGTTGCATTATGTTGCTGTAGCTACTATTTAATGTTCTGCATATTACTTGTTATGTCTTCTTTACCTTGATTATTTCCTTTCCGAATGACTTTGTTATGGGCTGCTTGAGTCGAGGATTGTTCAGAAACAATGTGCGGGTCTTTCAGAAACAATATATCCGTTAGTTGTGCGATCACACTTGCTATGTTGTTGTATCACACTTGCTATGTTGTTGTTGTTGGTATACATCTGATCTTTTGTTGGCTAAGATGACTACTGATTCAAAGAAAAGTTTCTAGGACACCAGGCTTAGTTAGTTGTGTCGTGTAGTCGAATCACATATTAATGATTCCCAAAATTTGCGATAATCCACATGGGAAAGTCTCTACCTGTTTACTAGAAATGGACATTTGGCCTAACTCCAAAAGTTAGCTCATCTACCTGTTTACTAGAAATGGACATATTTGGCCTTACTCCAAAAGTTAGCTCATAAGTCATAATGCGAGGATTGTTCAAGGAAAAAGAAATTCATTCCCTCAATCAATGTGGATTGACTCTAACACCAACGCATACTCAAGTCCAAACAGGTGTAGCATGGATAACATGTCATAGGAGCCCAGCATCAGGTAAAATAAGAGTAGTAATGGGTCTAGCTCTAGTATCATGTAAAGAAAATTAATGTTACGTGTAACTCAACCGTATAATTTTACTAACAAGTAGACAACCCATTTCCTGAATCATCGTGGGACTCTAATGGAGCTCTTAAGGGTAAATACTAGCAAGTTCAACTTGCACCACTTGCGTAGAAGGCTAGAAGCTAATTAATGTTATTTACACTCTACTTGGATTTTGTTACGTAGTGTTTCATAATATATCGTACTCTATTGTTTTATTGTTTTAATGAATACAACGATTGGATTGATTGTATCGTTCTTTGTCGTTATATAATGTCACACATGAATAATTTGAAGTACAAACCTACAAGAAAACTATGGGACAACTGGGTAGAACTACTATAAAAAATGAAGATAAAGGTGAAACAAGAATGTATAATAAAAAGTAAAGATGTCACCAAATCGGTCGTTGCAGTAAATGGGACATTTTGCCGTTACCTAATGATGGATTTAACAACACGAATGATAAAACTTAATCAAAACAAACCTTGTATTTGAGCTAACAATACAATATTACAATGGACAATAACCTTCCAAACAAGGTGCAAGGGCTTGAACTTTCAGGAAAGCTTTAAAAGATGTGAAACCTGGATATAACATGAAAGCAGGAATTGAGCTAAAATAAATTGCATTAAATTGGATTGACAAAAAGGGATAATAAAAGTTGTGGATGTGATCTTTTGGATGGCTGATTACCTACTGTAAAAGTTGTCGATCATTTTATAGATATTATAGATTTAGAAAAGTAAATTAAGCTACCCTGACTATCTTTTTCATATTCTTCTAGACTTGCTCCTTGAGTTTTCTATAAGTGGATCATGTTCACGTATCATGGGGATAATTGATAGTTATTGTATCAAGTAACTATTTTGTTCCTACTAAATCCTTTATTTTAGGTTTCTTTGGACTTGGCAAACACAGTAACTTCCGTGGTAACTTGGACCTTGATTAATTCTACGACATAGTTCCCTGGGTTTAGTTAGCTAAAGGTATAATCAAAGTCATGCTAATCTAATTGATTCAGACTCATTTAAGCTTAACTTCATGTTGTGAAGACTCAAAATCATTATCTTGTTGATAGGCTGACGGAAGGTGTAGAGGTGTTGTTCTCAACTCAGTTGAACTGGCTTTTGTCTCATTGTTTGGGCTGACTTGCCTCTCGGCTCAGCTAAGCTGGCCTTTGTCTCAACTGAAATCTTGGATTGAATAAATTACCCCTAAGCTCAGTCGAACAATGACCAAATGGGTTTATTTTAATGTCTATCACGTATCGATCATGTTGTGTCCTCCTTCTGTTTGGGGTCTTGGGGAAGAGGGTCAATTTCAGTTGAAGGGCATGATTCATTCGTGAGACTTCTAATGCATTAGGCTGATAATGGATATGTATCATTTCTAGGATTTAAATGGTTTTACAAAGTTTTAAATACTTTGATTGTTGCGCTTAGTAATTCATTGATGGTGTTACAGATCCTAGTTTCTTTAGTTTGATTTCCACACGTTAACTAACGAGGATCTTATGCTTCAACTTGTCTTTGTGTTTGCCCATTTCTATTTCTTTACTGCTAAGTTCCGCCTACTAACTGCTTTTTCCCTGCCCAGGAAGTAGGTGGCACACAATTAACAGCTTCAAACGGCATACTACTTTGGAAGTGCATAACCCTGAAGGCGGAGAAGATGAGATCAGTAATTTACCTGATTCCATTCTTCTTCACATTCTTTCATATCTTCCTACCAGAGATGTTGTGGGCACATGTATACTTTCAACAAGGTGGAAGAATCTTTGGACTTGTGTTGAAAACATTGACTTTGATGACTCATTTCTCTACTCAAGTAGGGTTTTTGGTTATCCGATGAAGGTCACTAGTTTCATGCACCTTGTTCACAGATTTCTTCAACTTCGAGAAAAATCAGTCATAAAAAAGTTTCGCCTTTCCTGCCGTGTTTGCTTCAGTGCCTCTCATGTATGTTCATGGCTTTCAACTGTTATTAGGCATAATGTTCAAGATCTTGATCTCTGTCTTTTTGTAGAAGAACCTTTTATGTTGCTTCAATGTGTTTCCAGTTGCAAGACACTTACTTCTCTAAAACTTGAAATGAA</genome_strand>
        <mrna_strand>CGGGATTGTCGTGCTCAGTACTTCTCCGATGACCGAATTTCGCCGGTAACGGAGGTCACCGGTCGCCGTGGTTCCATATTTATTGTCTACTTTTGCTACCAAAAGCTTCAGTCTCTGAGTTCGCTTTCCTCAAATGGCCACTATCGTCTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGGTGGCACACAATTAACAGCTTCAAACGGCATACTGCTTTGGAAGTGCATAACCCCGAAGGCGGAGAAGATAAGATCAGCAATTTACATGATTCCATTCTTCTTCACATTCTTTCATATCTTCCTACCAGAGATGTTGTGGGCACATGTATACTTTCAACAAGGTGGAAGTATCTTTGGACTTGTGTTGAAAACATTGACTTTGATGACTCATTTCTCTACTCAAGTAGGGTTTTTGGTTATCCGATGAAGGTCACTAGTTTCATGCACTTTGTTCACAGATTTCTTCAACTTCGAGAAGAATCAGACATAAAAAAGTTTCACCTTTCCTGCCGTGTTTGCTTCAGTGCCTCTCATGTTTGTTCATGGCTTTCAACTGTTATTAGGCATAATGTTCAAGATCTTGATCTCTGTCTTTTTGTAGAAGAACCTTTTATGTTGCCTCAATGTGTTTTCAGTAGCAAGACACTTACTTCTCTAAAACTTGAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443699" ref_strand="+" ref_description="SGN-E443699 [cSTA-39-B19]">
      <seq>cgggattgtcgtgctcagtacttctccgatgaccgaatttcgccggtaacggaggtcaccggtcgccgtggttccatatttattgtctacttttgctaccaaaagcttcagtctctgagttcgctttcctcaaatggccactatcgtctctaggagtaggtggcacacaattaacagcttcaaacggcatactgctttggaagtgcataaccccgaaggcggagaagataagatcagcaatttacatgattccattcttcttcacattctttcatatcttcctaccagagatgttgtgggcacatgtatactttcaacaaggtggaagtatctttggacttgtgttgaaaacattgactttgatgactcatttctctactcaagtagggtttttggttatccgatgaaggtcactagtttcatgcactttgttcacagatttcttcaacttcgagaagaatcagacataaaaaagtttcaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="8185" stop="11795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8484" g_stop="8635" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8636" i_stop="11162" i_length="2527">
            <donor d_prob="0.989" d_score="0.88"/>
            <acceptor a_prob="0.940" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11163" g_stop="11495" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="485" r_length="333" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E443699" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8484" e_stop="8635"/>
          <exon e_start="11163" e_stop="11495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATGGTCGTGTTCAGTACTTCTCCGATGATCAAATTTCGCCGGTAACGAAGGTTACAGGTCGCCGTGGTTCCATATTTACTGTCTACTTTTGCAACCAAAAGCTTCGGTCTCCGAGTTCTCTTTCCTCAAATGGTCACTGTCGTTTCTAGTGAGCTCCTTTTCACTTATCTTCTTTAGTGTATCGTAACCTCTTTCGGTTTCCGTTTTGTGGTTATGGCTTCTGATGTCGTTGATGTATCAAACGTAGTTAATATTTATCTTTTGGTATTGTCACTTTATTCGATTTTTTTTTGGGTGTAAAATCTCTTTTTGTTTTGACACTTTTTTATTTTGGTTTCTCTTTGTGTACATATAGTTATCAGTAGTATTATCACTGTTCTCGTAGTTTTTTGTTATTATCGATTGCTTTCAGTGCTTAGGGTTGTTGCATTATGTTGCTGTAGCTACTATTTAATGTTCTGCATATTACTTGTTATGTCTTCTTTACCTTGATTATTTCCTTTCCGAATGACTTTGTTATGGGCTGCTTGAGTCGAGGATTGTTCAGAAACAATGTGCGGGTCTTTCAGAAACAATATATCCGTTAGTTGTGCGATCACACTTGCTATGTTGTTGTATCACACTTGCTATGTTGTTGTTGTTGGTATACATCTGATCTTTTGTTGGCTAAGATGACTACTGATTCAAAGAAAAGTTTCTAGGACACCAGGCTTAGTTAGTTGTGTCGTGTAGTCGAATCACATATTAATGATTCCCAAAATTTGCGATAATCCACATGGGAAAGTCTCTACCTGTTTACTAGAAATGGACATTTGGCCTAACTCCAAAAGTTAGCTCATCTACCTGTTTACTAGAAATGGACATATTTGGCCTTACTCCAAAAGTTAGCTCATAAGTCATAATGCGAGGATTGTTCAAGGAAAAAGAAATTCATTCCCTCAATCAATGTGGATTGACTCTAACACCAACGCATACTCAAGTCCAAACAGGTGTAGCATGGATAACATGTCATAGGAGCCCAGCATCAGGTAAAATAAGAGTAGTAATGGGTCTAGCTCTAGTATCATGTAAAGAAAATTAATGTTACGTGTAACTCAACCGTATAATTTTACTAACAAGTAGACAACCCATTTCCTGAATCATCGTGGGACTCTAATGGAGCTCTTAAGGGTAAATACTAGCAAGTTCAACTTGCACCACTTGCGTAGAAGGCTAGAAGCTAATTAATGTTATTTACACTCTACTTGGATTTTGTTACGTAGTGTTTCATAATATATCGTACTCTATTGTTTTATTGTTTTAATGAATACAACGATTGGATTGATTGTATCGTTCTTTGTCGTTATATAATGTCACACATGAATAATTTGAAGTACAAACCTACAAGAAAACTATGGGACAACTGGGTAGAACTACTATAAAAAATGAAGATAAAGGTGAAACAAGAATGTATAATAAAAAGTAAAGATGTCACCAAATCGGTCGTTGCAGTAAATGGGACATTTTGCCGTTACCTAATGATGGATTTAACAACACGAATGATAAAACTTAATCAAAACAAACCTTGTATTTGAGCTAACAATACAATATTACAATGGACAATAACCTTCCAAACAAGGTGCAAGGGCTTGAACTTTCAGGAAAGCTTTAAAAGATGTGAAACCTGGATATAACATGAAAGCAGGAATTGAGCTAAAATAAATTGCATTAAATTGGATTGACAAAAAGGGATAATAAAAGTTGTGGATGTGATCTTTTGGATGGCTGATTACCTACTGTAAAAGTTGTCGATCATTTTATAGATATTATAGATTTAGAAAAGTAAATTAAGCTACCCTGACTATCTTTTTCATATTCTTCTAGACTTGCTCCTTGAGTTTTCTATAAGTGGATCATGTTCACGTATCATGGGGATAATTGATAGTTATTGTATCAAGTAACTATTTTGTTCCTACTAAATCCTTTATTTTAGGTTTCTTTGGACTTGGCAAACACAGTAACTTCCGTGGTAACTTGGACCTTGATTAATTCTACGACATAGTTCCCTGGGTTTAGTTAGCTAAAGGTATAATCAAAGTCATGCTAATCTAATTGATTCAGACTCATTTAAGCTTAACTTCATGTTGTGAAGACTCAAAATCATTATCTTGTTGATAGGCTGACGGAAGGTGTAGAGGTGTTGTTCTCAACTCAGTTGAACTGGCTTTTGTCTCATTGTTTGGGCTGACTTGCCTCTCGGCTCAGCTAAGCTGGCCTTTGTCTCAACTGAAATCTTGGATTGAATAAATTACCCCTAAGCTCAGTCGAACAATGACCAAATGGGTTTATTTTAATGTCTATCACGTATCGATCATGTTGTGTCCTCCTTCTGTTTGGGGTCTTGGGGAAGAGGGTCAATTTCAGTTGAAGGGCATGATTCATTCGTGAGACTTCTAATGCATTAGGCTGATAATGGATATGTATCATTTCTAGGATTTAAATGGTTTTACAAAGTTTTAAATACTTTGATTGTTGCGCTTAGTAATTCATTGATGGTGTTACAGATCCTAGTTTCTTTAGTTTGATTTCCACACGTTAACTAACGAGGATCTTATGCTTCAACTTGTCTTTGTGTTTGCCCATTTCTATTTCTTTACTGCTAAGTTCCGCCTACTAACTGCTTTTTCCCTGCCCAGGAAGTAGGTGGCACACAATTAACAGCTTCAAACGGCATACTACTTTGGAAGTGCATAACCCTGAAGGCGGAGAAGATGAGATCAGTAATTTACCTGATTCCATTCTTCTTCACATTCTTTCATATCTTCCTACCAGAGATGTTGTGGGCACATGTATACTTTCAACAAGGTGGAAGAATCTTTGGACTTGTGTTGAAAACATTGACTTTGATGACTCATTTCTCTACTCAAGTAGGGTTTTTGGTTATCCGATGAAGGTCACTAGTTTCATGCACCTTGTTCACAGATTTCTTCAACTTCGAGAAAAATCAGTCATAAAAAAGTTTCGCCTTT</genome_strand>
        <mrna_strand>CGGGATTGTCGTGCTCAGTACTTCTCCGATGACCGAATTTCGCCGGTAACGGAGGTCACCGGTCGCCGTGGTTCCATATTTATTGTCTACTTTTGCTACCAAAAGCTTCAGTCTCTGAGTTCGCTTTCCTCAAATGGCCACTATCGTCTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAGGTGGCACACAATTAACAGCTTCAAACGGCATACTGCTTTGGAAGTGCATAACCCCGAAGGCGGAGAAGATAAGATCAGCAATTTACATGATTCCATTCTTCTTCACATTCTTTCATATCTTCCTACCAGAGATGTTGTGGGCACATGTATACTTTCAACAAGGTGGAAGTATCTTTGGACTTGTGTTGAAAACATTGACTTTGATGACTCATTTCTCTACTCAAGTAGGGTTTTTGGTTATCCGATGAAGGTCACTAGTTTCATGCACTTTGTTCACAGATTTCTTCAACTTCGAGAAGAATCAGACATAAAAAAGTTTCACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364835" ref_strand="+" ref_description="SGN-E364835 [cLPT-4-K20]">
      <seq>ccaccctagtttttttctgctatttcaacatacactttcttccataaattcttgtttgtatacataaaaaaacttgttttgtggatcatcacatcacatggttgatcttgttttacactgagatttcaatattttttctgtgtttatcacacaagtagatctccttctcacttacacagagtgcacatggtttttcaggctctttctacgtagacggagccgtgaagagaaacctttttttttttcaagttttctgtaaaaatcttgatctggggttttggggtttttgtgtttttgatcttataataaaaaagttttaatttttagtcaaaacccatctgaattttcgcttgccagctcaaaggattttgaaccatgatgtctacagtgaagcaagcagcttttacaatcaatgggtgtgatttcattcggtcaaagtctcaatctttggcttctacacgccgtatctctctacttccgccattaccggcgatgaagtctcgccggagctccggtgtatcggtgtcaaagcctgtttttgtttcttctgttgagagttttgggggtttgaagagatctaatgagaaaactgatagtggtttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="17848" stop="19075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18148" g_stop="18775" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E364835" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.038" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18148" e_stop="18775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCTAGTTTTTTTCTGCTATTTCAACATACACTTTCTTCCATAAATTCTTGTTTTTTGTATACATAAAAAAAAAAAACTTGTTTTGTGGATCATCACATCACATGTTTGATCTTGTTTTACACTGAGATTTCAATATTTTTCTCTGTGTTTATATCACACAAGTAGATCTCCTTCTCACTTACACAGAGTGCACATGGTTTTTCAGGCTCTTTCTACGTAGACGGAGCCGTGAAGAGAAACCTTTTTTTTTTTCTTTTCTTTTCAAGTTTTCTGT-AAAATCTTGATCTGGGGTTTTGGGGTTTTTTGTGTTTTTGATCTTATAATAAAAAAAAGTTTTAATTTTTAGTCAAAACCCATCTGAATTTTCGCTTGCCAGCTCAAAGGATTTTGAACCATGATGTCTACAGTGAAGCAAGCAGCTTTTACAATCAATGGGTGTGATTTCATTCGGTCAAAGTCTCAATCTTTGGCTTCTACACGCCGTATCTCTCTACTTCCGCCATTACCGGCGATGAAGTCTCGCCGGAGCTCCGGTGTATCGGTGTCGAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGTGGTTTGGT</genome_strand>
        <mrna_strand>CCACCCTAGTTTTTTTCTGCTATTTCAACATACACTTTCTTCCATAAATTCTTG---TTTGTATACAT-----AAAAAAACTTGTTTTGTGGATCATCACATCACATGGTTGATCTTGTTTTACACTGAGATTTCAATATTTTT-TCTGTG-TT-TATCACACAAGTAGATCTCCTTCTCACTTACACAGAGTGCACATGGTTTTTCAGGCTCTTTCTACGTAGACGGAGCCGTGAAGAGAAACC--------TTT-TTTT-TTTTCAAGTTTTCTGTAAAAATCTTGATCTGGGGTTTTGGGG-TTTTTGTGTTTTTGATCTTATAAT--AAAAAAGTTTTAATTTTTAGTCAAAACCCATCTGAATTTTCGCTTGCCAGCTCAAAGGATTTTGAACCATGATGTCTACAGTGAAGCAAGCAGCTTTTACAATCAATGGGTGTGATTTCATTCGGTCAAAGTCTCAATCTTTGGCTTCTACACGCCGTATCTCTCTACTTCCGCCATTACCGGCGATGAAGTCTCGCCGGAGCTCCGGTGTATCGGTGTCAAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGTGGTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214000" ref_strand="+" ref_description="SGN-E214000 [cLEC-80-F20]">
      <seq>tttttttctgctatttcaacatacactttcttccataaattcttgttttttgtatacataaaaaaaaaaaacttgttttgtggatcatcacatcacatgtttgatcttgttttacactgagatttcaatatttttctctgtgtttatatcacacaagtagatctccttctcacttacacagagtgcacatggtttttcaggctctttctacgtagacggagccgtgaagagaaaccttttttttttttcttttcttttcaagttttctgtaaaatcttgatctggggttttggggttttttgtgtttttgatcttataataaaaaaaagttttaatttttagtcaaaacccatctgaattttcgcttgccagctcaaaggattttgaaccatgatgtctacagtgaagcaagcagcttttacaatcaatgggtgtgatttcattcggtcaaagtctcaatctttggcttctacacgccgtatctctctacttccgccattaccggcgatgaagtctcgccggagctccggtgtatcggtgtcgaagcctgtttttgtttcttctgttgagagttttgggggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="17857" stop="19039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18157" g_stop="18739" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E214000" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18157" e_stop="18739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTGCTATTTCAACATACACTTTCTTCCATAAATTCTTGTTTTTTGTATACATAAAAAAAAAAAACTTGTTTTGTGGATCATCACATCACATGTTTGATCTTGTTTTACACTGAGATTTCAATATTTTTCTCTGTGTTTATATCACACAAGTAGATCTCCTTCTCACTTACACAGAGTGCACATGGTTTTTCAGGCTCTTTCTACGTAGACGGAGCCGTGAAGAGAAACC-TTTTTTTTTTTCTTTTCTTTTCAAGTTTTCTGTAAAATCTTGATCTGGGGTTTTGGGGTTTTTTGTGTTTTTGATCTTATAATAAAAAAAAGTTTTAATTTTTAGTCAAAACCCATCTGAATTTTCGCTTGCCAGCTCAAAGGATTTTGAACCATGATGTCTACAGTGAAGCAAGCAGCTTTTACAATCAATGGGTGTGATTTCATTCGGTCAAAGTCTCAATCTTTGGCTTCTACACGCCGTATCTCTCTACTTCCGCCATTACCGGCGATGAAGTCTCGCCGGAGCTCCGGTGTATCGGTGTCGAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTT</genome_strand>
        <mrna_strand>TTTTTTTCTGCTATTTCAACATACACTTTCTTCCATAAATTCTTGTTTTTTGTATACATAAAAAAAAAAAACTTGTTTTGTGGATCATCACATCACATGTTTGATCTTGTTTTACACTGAGATTTCAATATTTTTCTCTGTGTTTATATCACACAAGTAGATCTCCTTCTCACTTACACAGAGTGCACATGGTTTTTCAGGCTCTTTCTACGTAGACGGAGCCGTGAAGAGAAACCTTTTTTTTTTTTCTTTTCTTTTCAAGTTTTCTGTAAAATCTTGATCTGGGGTTTTGGGGTTTTTTGTGTTTTTGATCTTATAATAAAAAAAAGTTTTAATTTTTAGTCAAAACCCATCTGAATTTTCGCTTGCCAGCTCAAAGGATTTTGAACCATGATGTCTACAGTGAAGCAAGCAGCTTTTACAATCAATGGGTGTGATTTCATTCGGTCAAAGTCTCAATCTTTGGCTTCTACACGCCGTATCTCTCTACTTCCGCCATTACCGGCGATGAAGTCTCGCCGGAGCTCCGGTGTATCGGTGTCGAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580632" ref_strand="+" ref_description="SGN-E580632 [5875]">
      <seq>tttgctggtattatattattttgtgatctttatataaaaaagttttatttttagtcaaacccatctgattttcgcttgccagctcaaggattttgaaccatgatctctacagtgaagcaatcggcttttacaatcaatgggtgtgattttattcggtcaaagtctcaatctttggcttcttcacgccgcatctctgtacttccgccattaccggcgatgaagtctcgccggagctccggtgtatctatttctaagcctgtttttgtttcttctgttgagagttttgggggtttgaagagatctaatgagaaaactgatagcggtttggttaagtgtaaggcttatgaagcggatcgggctgaaccgattgaaggacctgaatcgaaaacggaggtggcaaggaagatgaagatcggtgtttattttgctacttggtggtttttgaatgtgattttttaattatttataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="18146" stop="19214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18443" g_stop="18914" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E580632" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18443" e_stop="18914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGGGTTTTTTGTGTTTTTGATCTTATAATAAAAAAAAGTTTTAATTTTTAGTCAAAACCCATCTGAATTTTCGCTTGCCAGCTCAAAGGATTTTGAACCATGATGTCTACAGTGAAGCAAGCAGCTTTTACAATCAATGGGTGTGATTTCATTCGGTCAAAGTCTCAATCTTTGGCTTCTACACGCCGTATCTCTCTACTTCCGCCATTACCGGCGATGAAGTCTCGCCGGAGCTCCGGTGTATCGGTGTCGAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGTGGTTTGGTTAAGTGTAAGGCTTATGAAGCGGATCGGGCTGAGCCGATGGAAGGACCTGAATCGAAAGCGGAGTTGGCAAGGAAGATGAAGATCGGTGTTTATTTTGCTACTTGGTGGTTTTTGAATGTGA-TTTTTAA-TATTTATAAT</genome_strand>
        <mrna_strand>TTTGCTGGTATTATATTATTTTGTGATCTTTATATAAAAAAGTTTT-ATTTTTAGTC-AAACCCATCTG-ATTTTCGCTTGCCAGCTC-AAGGATTTTGAACCATGATCTCTACAGTGAAGCAATCGGCTTTTACAATCAATGGGTGTGATTTTATTCGGTCAAAGTCTCAATCTTTGGCTTCTTCACGCCGCATCTCTGTACTTCCGCCATTACCGGCGATGAAGTCTCGCCGGAGCTCCGGTGTATCTATTTCTAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGCGGTTTGGTTAAGTGTAAGGCTTATGAAGCGGATCGGGCTGAACCGATTGAAGGACCTGAATCGAAAACGGAGGTGGCAAGGAAGATGAAGATCGGTGTTTATTTTGCTACTTGGTGGTTTTTGAATGTGATTTTTTAATTATTTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560821" ref_strand="+" ref_description="SGN-E560821 [20535]">
      <seq>attatattattttctgatctttattataaaaaagttttaaatttttagtcaaaacccatctgaattttcgcttgccagctcaaaggattttgaaccatgatctctacagtgaagcaatcggcttttacaatcaatgggtgtgattttattcggtcaaagtctcaatctttggcttcttcacgccgtatctctgtacttccgccattaccggcgatgaagtctcgccggagctccggtgtatctatttctaagcctgtttttgtttcttctgttgagagttttgggggtttgaagagatctaatgagaaaactgatagcggtttggttaagtgtaaggcttatgaagcggatcgggctgaaccgattgaaggacctgaatcgaaaacggaggtggcaaggaagatgaagatcggtgtttattttgctacttggtggtttttgaatgtgatttttaatatttataataagaaagtgttgaatgcttttccattcccttggttaacatcaactttgtcacttgctgctggttcacttattatgttgatttcttgggctctaagaattgcagaagctcctaaaactgatcttgagttctggaaaactctattcccggttgccgttgcacatacaatttgggcatgtggcagctacagtgagcatgtcaaagggtgggcagttttcattcactcacatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="18151" stop="20320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18450" g_stop="19061" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19062" i_stop="19939" i_length="878">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19940" g_stop="20020" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="697" r_length="85" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E560821" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18450" e_stop="19061"/>
          <exon e_start="19940" e_stop="20020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTGTGTTTTTGATCTTATAATAAAAAAAAGTTTT-AATTTTTAGTCAAAACCCATCTGAATTTTCGCTTGCCAGCTCAAAGGATTTTGAACCATGATGTCTACAGTGAAGCAAGCAGCTTTTACAATCAATGGGTGTGATTTCATTCGGTCAAAGTCTCAATCTTTGGCTTCTACACGCCGTATCTCTCTACTTCCGCCATTACCGGCGATGAAGTCTCGCCGGAGCTCCGGTGTATCGGTGTCGAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGTGGTTTGGTTAAGTGTAAGGCTTATGAAGCGGATCGGGCTGAGCCGATGGAAGGACCTGAATCGAAAGCGGAGTTGGCAAGGAAGATGAAGATCGGTGTTTATTTTGCTACTTGGTGGTTTTTGAATGTGATTTTTAATATTTATAATAAGAAAGTGTTGAATGCTTTTCCATTTCCTTGGTTAACATCAACTTTGTCACTTGCTGCTGGTTCACTTATTATGTTGATTTCTTGGACTCTTAGAATTGCAGAAGCTCCTAAAACTGATCTTGAATTCTGGAAAACTCTCTTACCGGTAAGGAAAATTGAGTTTTTAGGATACCCAATTGAATAAAGATCACAACTTTTTGCATTTTTTATGTTTCTGGACATAATTTTGATGTTTTATGCTTGTAATTAGGTTGGTTTTGGTTCTTGTGATCTGTTCTGTAGTGTTTGGTTCTCCAGGGATCTAGTCTATGGTGGTTGTGATATTGAAATTTTTACCTGCTATAGATCTTGGGTTTAGTTTTTAGGGGTTCTGAGATATATTTACCAACATAGTACCTATATTTGATTTTGATTTTGTTTGGATTTAATGTTGAGAGAAATGTTTTCTGGGTTTGGTGACAGAGAACACAAAACAACAAAAGGTGTTGGTTTTGAAGTACACAACAATTGTTTTATGAAAACAAAGTTTTGTTTTTTTGTGGATGAAAGCCATAAGAGACCTTCAATCCTAAGTGATTTAGTTTCTCCTTCGTTTCTGTGGACATGCACACAGACTAGCTTCGATACTGTCATTGTCTGAGAAAAGTTTTGTATTTTTGTGGATGAAAACTGTAAGACCTTCAATGCTAAGTGATTTGTTTTTTACTTTGTTTCGGTGGTCAGAGTTATTTGATACATGTGTTAGTGTGAGGTAGCACGTAGATGTGCACACAGACTAGATTGGATACTATCATTATCTAAAAAAAGTTTGTATTTTTATGGATGGAAACGACAAGAGACCTTCATGTTTAGTGATTTCTTTTCTTCAGTTTTGTGGTCAAAGTTATTTGATACATGTACTAGTGTGAATAGCATGTAGACGTGCACAGTCTAGCTTGGAACTATAATTATCTGAAAAGTGTTGTTTTTTAGTGCTGAACAGAGTCTTAATCACTCTTTGTTTTCTTCCTGTTTTGTTTCTAGGTTGCCATTGCACATACAA-TTGGGCATGTTGCAGCTACAGTGAGCATGTCAAA-GGT-GGCAG-TTTCATTCACTCACATCATC</genome_strand>
        <mrna_strand>ATTATATTATTTTCTGATCTT-TATTATAAAAAAGTTTTAAATTTTTAGTCAAAACCCATCTGAATTTTCGCTTGCCAGCTCAAAGGATTTTGAACCATGATCTCTACAGTGAAGCAATCGGCTTTTACAATCAATGGGTGTGATTTTATTCGGTCAAAGTCTCAATCTTTGGCTTCTTCACGCCGTATCTCTGTACTTCCGCCATTACCGGCGATGAAGTCTCGCCGGAGCTCCGGTGTATCTATTTCTAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGCGGTTTGGTTAAGTGTAAGGCTTATGAAGCGGATCGGGCTGAACCGATTGAAGGACCTGAATCGAAAACGGAGGTGGCAAGGAAGATGAAGATCGGTGTTTATTTTGCTACTTGGTGGTTTTTGAATGTGATTTTTAATATTTATAATAAGAAAGTGTTGAATGCTTTTCCATTCCCTTGGTTAACATCAACTTTGTCACTTGCTGCTGGTTCACTTATTATGTTGATTTCTTGGGCTCTAAGAATTGCAGAAGCTCCTAAAACTGATCTTGAGTTCTGGAAAACTCTATTCCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGTTGCACATACAATTTGGGCATGTGGCAGCTACAGTGAGCATGTCAAAGGGTGGGCAGTTTTCATTCACTCACATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483177" ref_strand="+" ref_description="SGN-E483177 [cSTE-8-A20]">
      <seq>tggcttcttcacgccgtatctctgtacttccgccattaccggcgatgaagtctcgccggagctccggtgtatctatttctaagcctgtttttgtttcttctgttgagagttttgggggtttgaagagatctaatgagaaaactgataacggtttggttaagtgtaaggcttatgaagcggatcgggctgaaccgattgaaggacctgaatcgaaaacggaggtggcaaggaagatgaacatcggtgtttattttgctacttggtggcttttgaatgtgatttttaatatttataataagaaagtgttgaatgcttttccattcccttggttaacatcaactttgtcacttgctgctggtgcacttattatgttgattgcttgggctctaagaattgcagaagctcctaaaactgatcttgagttctggaaaactctattcccggttgccgttgcacatacaattgggcatgtggcagctacagtgagcatgtcaaaggtggcagtttcattcactcgcatcatcaagagtggtgaacctgcttttagtgttttggtttcaaggttcctcttgggagagtcataccctaccgccgattacttatctcttatccccatcatcggtggttgtggtctttctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="18319" stop="20436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18619" g_stop="19061" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19062" i_stop="19939" i_length="878">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19940" g_stop="20137" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="641" r_length="198" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E483177" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18619" e_stop="19061"/>
          <exon e_start="19940" e_stop="20137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTACACGCCGTATCTCTCTACTTCCGCCATTACCGGCGATGAAGTCTCGCCGGAGCTCCGGTGTATCGGTGTCGAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGTGGTTTGGTTAAGTGTAAGGCTTATGAAGCGGATCGGGCTGAGCCGATGGAAGGACCTGAATCGAAAGCGGAGTTGGCAAGGAAGATGAAGATCGGTGTTTATTTTGCTACTTGGTGGTTTTTGAATGTGATTTTTAATATTTATAATAAGAAAGTGTTGAATGCTTTTCCATTTCCTTGGTTAACATCAACTTTGTCACTTGCTGCTGGTTCACTTATTATGTTGATTTCTTGGACTCTTAGAATTGCAGAAGCTCCTAAAACTGATCTTGAATTCTGGAAAACTCTCTTACCGGTAAGGAAAATTGAGTTTTTAGGATACCCAATTGAATAAAGATCACAACTTTTTGCATTTTTTATGTTTCTGGACATAATTTTGATGTTTTATGCTTGTAATTAGGTTGGTTTTGGTTCTTGTGATCTGTTCTGTAGTGTTTGGTTCTCCAGGGATCTAGTCTATGGTGGTTGTGATATTGAAATTTTTACCTGCTATAGATCTTGGGTTTAGTTTTTAGGGGTTCTGAGATATATTTACCAACATAGTACCTATATTTGATTTTGATTTTGTTTGGATTTAATGTTGAGAGAAATGTTTTCTGGGTTTGGTGACAGAGAACACAAAACAACAAAAGGTGTTGGTTTTGAAGTACACAACAATTGTTTTATGAAAACAAAGTTTTGTTTTTTTGTGGATGAAAGCCATAAGAGACCTTCAATCCTAAGTGATTTAGTTTCTCCTTCGTTTCTGTGGACATGCACACAGACTAGCTTCGATACTGTCATTGTCTGAGAAAAGTTTTGTATTTTTGTGGATGAAAACTGTAAGACCTTCAATGCTAAGTGATTTGTTTTTTACTTTGTTTCGGTGGTCAGAGTTATTTGATACATGTGTTAGTGTGAGGTAGCACGTAGATGTGCACACAGACTAGATTGGATACTATCATTATCTAAAAAAAGTTTGTATTTTTATGGATGGAAACGACAAGAGACCTTCATGTTTAGTGATTTCTTTTCTTCAGTTTTGTGGTCAAAGTTATTTGATACATGTACTAGTGTGAATAGCATGTAGACGTGCACAGTCTAGCTTGGAACTATAATTATCTGAAAAGTGTTGTTTTTTAGTGCTGAACAGAGTCTTAATCACTCTTTGTTTTCTTCCTGTTTTGTTTCTAGGTTGCCATTGCACATACAATTGGGCATGTTGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCG</genome_strand>
        <mrna_strand>TGGCTTCTTCACGCCGTATCTCTGTACTTCCGCCATTACCGGCGATGAAGTCTCGCCGGAGCTCCGGTGTATCTATTTCTAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAACGGTTTGGTTAAGTGTAAGGCTTATGAAGCGGATCGGGCTGAACCGATTGAAGGACCTGAATCGAAAACGGAGGTGGCAAGGAAGATGAACATCGGTGTTTATTTTGCTACTTGGTGGCTTTTGAATGTGATTTTTAATATTTATAATAAGAAAGTGTTGAATGCTTTTCCATTCCCTTGGTTAACATCAACTTTGTCACTTGCTGCTGGTGCACTTATTATGTTGATTGCTTGGGCTCTAAGAATTGCAGAAGCTCCTAAAACTGATCTTGAGTTCTGGAAAACTCTATTCCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGTTGCACATACAATTGGGCATGTGGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCGCATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATACCCTACCGCCGATTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369300" ref_strand="+" ref_description="SGN-E369300 [TUS-25-A6]">
      <seq>cggtgtatcggtgtcgaagcctgtttttgtttcttctgttgagagttttgggggtttgaagagatctaatgagaaaactgatagtggtttggttaagtgtaaggcttatgaagcggatcgggctgagccgatggaaggacctgaatcgaaagcggagttggcaaggaagatgaagatcggtgtttattttgctacttggtggtttttgaatgtgatttttaatatttataataagaaagtgttgaatgcttttccatttccttggttaacatcaactttgtcacttgctgctggttcacttattatgttgatttcttggactcttagaattgcataagctcctaaaactgatcttgaattctggaaaactctcttaccggttgccattgcacatacaattgggcatgttgcatctacagtgagcatgtctaaggtggcagtttcattcactcacatcatctagagtggtgaacctgcttttagtgttttggtttcaaggttcctctttgggatagtctttccctaccgtcgtgtacttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="18383" stop="20399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18683" g_stop="19061" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19062" i_stop="19939" i_length="878">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19940" g_stop="20100" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="541" r_length="162" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E369300" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18683" e_stop="19061"/>
          <exon e_start="19940" e_stop="20100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGTATCGGTGTCGAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGTGGTTTGGTTAAGTGTAAGGCTTATGAAGCGGATCGGGCTGAGCCGATGGAAGGACCTGAATCGAAAGCGGAGTTGGCAAGGAAGATGAAGATCGGTGTTTATTTTGCTACTTGGTGGTTTTTGAATGTGATTTTTAATATTTATAATAAGAAAGTGTTGAATGCTTTTCCATTTCCTTGGTTAACATCAACTTTGTCACTTGCTGCTGGTTCACTTATTATGTTGATTTCTTGGACTCTTAGAATTGCAGAAGCTCCTAAAACTGATCTTGAATTCTGGAAAACTCTCTTACCGGTAAGGAAAATTGAGTTTTTAGGATACCCAATTGAATAAAGATCACAACTTTTTGCATTTTTTATGTTTCTGGACATAATTTTGATGTTTTATGCTTGTAATTAGGTTGGTTTTGGTTCTTGTGATCTGTTCTGTAGTGTTTGGTTCTCCAGGGATCTAGTCTATGGTGGTTGTGATATTGAAATTTTTACCTGCTATAGATCTTGGGTTTAGTTTTTAGGGGTTCTGAGATATATTTACCAACATAGTACCTATATTTGATTTTGATTTTGTTTGGATTTAATGTTGAGAGAAATGTTTTCTGGGTTTGGTGACAGAGAACACAAAACAACAAAAGGTGTTGGTTTTGAAGTACACAACAATTGTTTTATGAAAACAAAGTTTTGTTTTTTTGTGGATGAAAGCCATAAGAGACCTTCAATCCTAAGTGATTTAGTTTCTCCTTCGTTTCTGTGGACATGCACACAGACTAGCTTCGATACTGTCATTGTCTGAGAAAAGTTTTGTATTTTTGTGGATGAAAACTGTAAGACCTTCAATGCTAAGTGATTTGTTTTTTACTTTGTTTCGGTGGTCAGAGTTATTTGATACATGTGTTAGTGTGAGGTAGCACGTAGATGTGCACACAGACTAGATTGGATACTATCATTATCTAAAAAAAGTTTGTATTTTTATGGATGGAAACGACAAGAGACCTTCATGTTTAGTGATTTCTTTTCTTCAGTTTTGTGGTCAAAGTTATTTGATACATGTACTAGTGTGAATAGCATGTAGACGTGCACAGTCTAGCTTGGAACTATAATTATCTGAAAAGTGTTGTTTTTTAGTGCTGAACAGAGTCTTAATCACTCTTTGTTTTCTTCCTGTTTTGTTTCTAGGTTGCCATTGCACATACAATTGGGCATGTTGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTC-TTGGGAGAGTCATTCCCTACCGCCGTTTACTTATC</genome_strand>
        <mrna_strand>CGGTGTATCGGTGTCGAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGTGGTTTGGTTAAGTGTAAGGCTTATGAAGCGGATCGGGCTGAGCCGATGGAAGGACCTGAATCGAAAGCGGAGTTGGCAAGGAAGATGAAGATCGGTGTTTATTTTGCTACTTGGTGGTTTTTGAATGTGATTTTTAATATTTATAATAAGAAAGTGTTGAATGCTTTTCCATTTCCTTGGTTAACATCAACTTTGTCACTTGCTGCTGGTTCACTTATTATGTTGATTTCTTGGACTCTTAGAATTGCATAAGCTCCTAAAACTGATCTTGAATTCTGGAAAACTCTCTTACCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCATTGCACATACAATTGGGCATGTTGCATCTACAGTGAGCATGTCTAAGGTGGCAGTTTCATTCACTCACATCATCTAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTTGGGATAGTCTTTCCCTACCGTCGTGTACTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247116" ref_strand="+" ref_description="SGN-E247116 [cLEF-46-E19]">
      <seq>ctttgtatctttgtcgaagcctgtttttgtttgttctgtggagagttttgggggtttgaagagatctaatgagaaaactgatagtggtttggttaagtgtaaggcttatgaagcggatcgggctgagccgatggaaggacctgaatcgaaagcggagttggcaaggaagatgaagatcggtgtttattttgctacttggtggtttttgaatgtgatttttaatatttataataagaaagtgttgaatgcttttccatttccttggttaacatcaactttgtcacttgctgctggttcacttattatgttgatttcttggactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="18386" stop="19307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18683" g_stop="19007" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E247116" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18683" e_stop="19007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGTATCGGTGTCGAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGTGGTTTGGTTAAGTGTAAGGCTTATGAAGCGGATCGGGCTGAGCCGATGGAAGGACCTGAATCGAAAGCGGAGTTGGCAAGGAAGATGAAGATCGGTGTTTATTTTGCTACTTGGTGGTTTTTGAATGTGATTTTTAATATTTATAATAAGAAAGTGTTGAATGCTTTTCCATTTCCTTGGTTAACATCAACTTTGTCACTTGCTGCTGGTTCACTTATTATGTTGATTTCTTGGACTCTT</genome_strand>
        <mrna_strand>CTTTGTATCTTTGTCGAAGCCTGTTTTTGTTTGTTCTGTGGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGTGGTTTGGTTAAGTGTAAGGCTTATGAAGCGGATCGGGCTGAGCCGATGGAAGGACCTGAATCGAAAGCGGAGTTGGCAAGGAAGATGAAGATCGGTGTTTATTTTGCTACTTGGTGGTTTTTGAATGTGATTTTTAATATTTATAATAAGAAAGTGTTGAATGCTTTTCCATTTCCTTGGTTAACATCAACTTTGTCACTTGCTGCTGGTTCACTTATTATGTTGATTTCTTGGACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690387" ref_strand="+" ref_description="SGN-E690387 [LH_Ea03G01]">
      <seq>cacgtgatttttaatatttataataagaaagtgttgaatgcttttccatttccttggttaacatcaactttgtcacttgctgctggttcacttattatgttgatttcttggactcttagaattgcagaagctcctaaaactgatcttgaattctggaaaactctcttgccggttgccattgcacatacaattgggcatgtggcagctacagtgagcatgtcaaaggtggcagtttcattcactcacatcatcaagagtggtgaacctgcttttagtgttttggtttcaaggttcctcttgggagagtcattccctaccgccgtttacttatctcttatccccatcatcggtggttgtggtctttctgcgcttacagagttgaacttcaactggattggtttctcgggtgctatgatctcgaatgtggcatttgtcttcagaaatatattctccaagaagggtatgaaggggaagtctgttagtgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtctctcaaattggtccccagatcgtctggtggatggcggcccacagtgtattttatcacctctacaatcaagtttcgtacatgtctttggatgagatctctcctttgacgtttagtattggaaacaccatgaaacgtatatcagtaattgtctcttccatcattatcttccgtacacccgtccagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="18592" stop="22219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18891" g_stop="19061" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19062" i_stop="19939" i_length="878">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19940" g_stop="20165" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="397" r_length="226" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20755" g_stop="20977" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="620" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21760" g_stop="21919" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="780" r_length="160" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E690387" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18891" e_stop="19061"/>
          <exon e_start="19940" e_stop="20165"/>
          <exon e_start="20755" e_stop="20977"/>
          <exon e_start="21760" e_stop="21919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGATTTTTAATATTTATAATAAGAAAGTGTTGAATGCTTTTCCATTTCCTTGGTTAACATCAACTTTGTCACTTGCTGCTGGTTCACTTATTATGTTGATTTCTTGGACTCTTAGAATTGCAGAAGCTCCTAAAACTGATCTTGAATTCTGGAAAACTCTCTTACCGGTAAGGAAAATTGAGTTTTTAGGATACCCAATTGAATAAAGATCACAACTTTTTGCATTTTTTATGTTTCTGGACATAATTTTGATGTTTTATGCTTGTAATTAGGTTGGTTTTGGTTCTTGTGATCTGTTCTGTAGTGTTTGGTTCTCCAGGGATCTAGTCTATGGTGGTTGTGATATTGAAATTTTTACCTGCTATAGATCTTGGGTTTAGTTTTTAGGGGTTCTGAGATATATTTACCAACATAGTACCTATATTTGATTTTGATTTTGTTTGGATTTAATGTTGAGAGAAATGTTTTCTGGGTTTGGTGACAGAGAACACAAAACAACAAAAGGTGTTGGTTTTGAAGTACACAACAATTGTTTTATGAAAACAAAGTTTTGTTTTTTTGTGGATGAAAGCCATAAGAGACCTTCAATCCTAAGTGATTTAGTTTCTCCTTCGTTTCTGTGGACATGCACACAGACTAGCTTCGATACTGTCATTGTCTGAGAAAAGTTTTGTATTTTTGTGGATGAAAACTGTAAGACCTTCAATGCTAAGTGATTTGTTTTTTACTTTGTTTCGGTGGTCAGAGTTATTTGATACATGTGTTAGTGTGAGGTAGCACGTAGATGTGCACACAGACTAGATTGGATACTATCATTATCTAAAAAAAGTTTGTATTTTTATGGATGGAAACGACAAGAGACCTTCATGTTTAGTGATTTCTTTTCTTCAGTTTTGTGGTCAAAGTTATTTGATACATGTACTAGTGTGAATAGCATGTAGACGTGCACAGTCTAGCTTGGAACTATAATTATCTGAAAAGTGTTGTTTTTTAGTGCTGAACAGAGTCTTAATCACTCTTTGTTTTCTTCCTGTTTTGTTTCTAGGTTGCCATTGCACATACAATTGGGCATGTTGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCA</genome_strand>
        <mrna_strand>CACGTGATTTTTAATATTTATAATAAGAAAGTGTTGAATGCTTTTCCATTTCCTTGGTTAACATCAACTTTGTCACTTGCTGCTGGTTCACTTATTATGTTGATTTCTTGGACTCTTAGAATTGCAGAAGCTCCTAAAACTGATCTTGAATTCTGGAAAACTCTCTTGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCATTGCACATACAATTGGGCATGTGGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATTGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCACAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATTGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307185" ref_strand="+" ref_description="SGN-E307185 [cLEY-15-O8]">
      <seq>ttgatttcttggactcttagaattgcagaagctcctaaaactgatcttgaattctggaaaactctcttaccggttgccattgcacatacaattgggcatgttgcagctacagtgagcatgtcaaaggtggcagtttcattcactcacatcatcaagagtggtgaacctgcttttagtgttttggtttcaaggttcctcttgggagagtcattccctaccgccgtttacttatctcttatccccatcatcggtggttgtggtctttctgcgcttacagagttgaacttcaactggattggtttctcgggtgctatgatctcgaatgtggcatttgtcttcagaaatatattctccaagaagggtatgaaggggaagtctgttagtgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtctctcaaatcggtccccagatcgtctggtggatggcggcccagagtgtattttatcacctctacaatcaagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="18690" stop="22107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18990" g_stop="19061" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19062" i_stop="19939" i_length="878">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19940" g_stop="20165" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="298" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20755" g_stop="20977" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="521" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21760" g_stop="21807" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="569" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E307185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18990" e_stop="19061"/>
          <exon e_start="19940" e_stop="20165"/>
          <exon e_start="20755" e_stop="20977"/>
          <exon e_start="21760" e_stop="21807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTCTTGGACTCTTAGAATTGCAGAAGCTCCTAAAACTGATCTTGAATTCTGGAAAACTCTCTTACCGGTAAGGAAAATTGAGTTTTTAGGATACCCAATTGAATAAAGATCACAACTTTTTGCATTTTTTATGTTTCTGGACATAATTTTGATGTTTTATGCTTGTAATTAGGTTGGTTTTGGTTCTTGTGATCTGTTCTGTAGTGTTTGGTTCTCCAGGGATCTAGTCTATGGTGGTTGTGATATTGAAATTTTTACCTGCTATAGATCTTGGGTTTAGTTTTTAGGGGTTCTGAGATATATTTACCAACATAGTACCTATATTTGATTTTGATTTTGTTTGGATTTAATGTTGAGAGAAATGTTTTCTGGGTTTGGTGACAGAGAACACAAAACAACAAAAGGTGTTGGTTTTGAAGTACACAACAATTGTTTTATGAAAACAAAGTTTTGTTTTTTTGTGGATGAAAGCCATAAGAGACCTTCAATCCTAAGTGATTTAGTTTCTCCTTCGTTTCTGTGGACATGCACACAGACTAGCTTCGATACTGTCATTGTCTGAGAAAAGTTTTGTATTTTTGTGGATGAAAACTGTAAGACCTTCAATGCTAAGTGATTTGTTTTTTACTTTGTTTCGGTGGTCAGAGTTATTTGATACATGTGTTAGTGTGAGGTAGCACGTAGATGTGCACACAGACTAGATTGGATACTATCATTATCTAAAAAAAGTTTGTATTTTTATGGATGGAAACGACAAGAGACCTTCATGTTTAGTGATTTCTTTTCTTCAGTTTTGTGGTCAAAGTTATTTGATACATGTACTAGTGTGAATAGCATGTAGACGTGCACAGTCTAGCTTGGAACTATAATTATCTGAAAAGTGTTGTTTTTTAGTGCTGAACAGAGTCTTAATCACTCTTTGTTTTCTTCCTGTTTTGTTTCTAGGTTGCCATTGCACATACAATTGGGCATGTTGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTC</genome_strand>
        <mrna_strand>TTGATTTCTTGGACTCTTAGAATTGCAGAAGCTCCTAAAACTGATCTTGAATTCTGGAAAACTCTCTTACCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCATTGCACATACAATTGGGCATGTTGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307186" ref_strand="+" ref_description="SGN-E307186 [cLEY-15-O20]">
      <seq>ttgattttttggactcttataattgcagaagctcctgaggactgatcttggattctgtgaaaactctcttaccggttgccattgcacatacaattgggcatgttgcagctacagtgagcatgtcaaaggtggcagttacattcactcacatcatcaagagtggtgaacctgcttttagtgttttggtttcaaggttcctcttgggagagtcattccctaccgccgattacttatctcttatccccatcatcggtggttgtggtctttctgcgcttacagagttgaacttcaactggattggtttctcgggtgctattatctcaaatgtggcatttgtcttcagaaatatattctccaagaaaggtatgaacgggaagtcttgtagtgggatgaactactatgcttgcttgtctatgctaggttttgttgattctcacaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="18690" stop="21195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18990" g_stop="19061" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19062" i_stop="19939" i_length="878">
            <donor d_prob="0.988" d_score="0.85"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19940" g_stop="20165" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="300" r_length="226" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20755" g_stop="20895" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="442" r_length="142" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E307186" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18990" e_stop="19061"/>
          <exon e_start="19940" e_stop="20165"/>
          <exon e_start="20755" e_stop="20895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTCTTGGACTCTTAGAATTGCAGAAGCTCCT-AAAACTGATCTTGAATTCTG-GAAAACTCTCTTACCGGTAAGGAAAATTGAGTTTTTAGGATACCCAATTGAATAAAGATCACAACTTTTTGCATTTTTTATGTTTCTGGACATAATTTTGATGTTTTATGCTTGTAATTAGGTTGGTTTTGGTTCTTGTGATCTGTTCTGTAGTGTTTGGTTCTCCAGGGATCTAGTCTATGGTGGTTGTGATATTGAAATTTTTACCTGCTATAGATCTTGGGTTTAGTTTTTAGGGGTTCTGAGATATATTTACCAACATAGTACCTATATTTGATTTTGATTTTGTTTGGATTTAATGTTGAGAGAAATGTTTTCTGGGTTTGGTGACAGAGAACACAAAACAACAAAAGGTGTTGGTTTTGAAGTACACAACAATTGTTTTATGAAAACAAAGTTTTGTTTTTTTGTGGATGAAAGCCATAAGAGACCTTCAATCCTAAGTGATTTAGTTTCTCCTTCGTTTCTGTGGACATGCACACAGACTAGCTTCGATACTGTCATTGTCTGAGAAAAGTTTTGTATTTTTGTGGATGAAAACTGTAAGACCTTCAATGCTAAGTGATTTGTTTTTTACTTTGTTTCGGTGGTCAGAGTTATTTGATACATGTGTTAGTGTGAGGTAGCACGTAGATGTGCACACAGACTAGATTGGATACTATCATTATCTAAAAAAAGTTTGTATTTTTATGGATGGAAACGACAAGAGACCTTCATGTTTAGTGATTTCTTTTCTTCAGTTTTGTGGTCAAAGTTATTTGATACATGTACTAGTGTGAATAGCATGTAGACGTGCACAGTCTAGCTTGGAACTATAATTATCTGAAAAGTGTTGTTTTTTAGTGCTGAACAGAGTCTTAATCACTCTTTGTTTTCTTCCTGTTTTGTTTCTAGGTTGCCATTGCACATACAATTGGGCATGTTGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCT-GTCTTTGTTGATTCTCACACCAT</genome_strand>
        <mrna_strand>TTGATTTTTTGGACTCTTATAATTGCAGAAGCTCCTGAGGACTGATCTTGGATTCTGTGAAAACTCTCTTACCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCATTGCACATACAATTGGGCATGTTGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTACATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGATTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGTGCTATTATCTCAAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAAGGTATGAACGGGAAGTCTTGTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTAGGTTTTGTTGATTCTCACACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438594" ref_strand="+" ref_description="SGN-E438594 [cSTA-8-F20]">
      <seq>ctgatcttgaattctggaaaactctattcccggttgccgttgcacatacaattgggcatgtggcagctacagtgagcatgtcaaaggtggcagtttcattcactcacatcatcaagagtggtgaacctgcttttagtgttttggtttcaaggttcctcttgggagagtcattccctaccgccgtttacttatctcttatccccatcatcggtggttgtggtctttctgcgcttacagagttgaacttcaattggattggtttctcgggggctatgatctcgaatgtggcatttgtcttcagaaatatattctccaagaagggtatgaaggggaagtctgttagtgggatgaactactatgcttgcctgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtatctcaaattggtccccagatcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="18730" stop="21276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19030" g_stop="19061" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19062" i_stop="19939" i_length="878">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19940" g_stop="20165" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="258" r_length="226" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20755" g_stop="20976" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="480" r_length="222" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E438594" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19030" e_stop="19061"/>
          <exon e_start="19940" e_stop="20165"/>
          <exon e_start="20755" e_stop="20976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCTTGAATTCTGGAAAACTCTCTTACCGGTAAGGAAAATTGAGTTTTTAGGATACCCAATTGAATAAAGATCACAACTTTTTGCATTTTTTATGTTTCTGGACATAATTTTGATGTTTTATGCTTGTAATTAGGTTGGTTTTGGTTCTTGTGATCTGTTCTGTAGTGTTTGGTTCTCCAGGGATCTAGTCTATGGTGGTTGTGATATTGAAATTTTTACCTGCTATAGATCTTGGGTTTAGTTTTTAGGGGTTCTGAGATATATTTACCAACATAGTACCTATATTTGATTTTGATTTTGTTTGGATTTAATGTTGAGAGAAATGTTTTCTGGGTTTGGTGACAGAGAACACAAAACAACAAAAGGTGTTGGTTTTGAAGTACACAACAATTGTTTTATGAAAACAAAGTTTTGTTTTTTTGTGGATGAAAGCCATAAGAGACCTTCAATCCTAAGTGATTTAGTTTCTCCTTCGTTTCTGTGGACATGCACACAGACTAGCTTCGATACTGTCATTGTCTGAGAAAAGTTTTGTATTTTTGTGGATGAAAACTGTAAGACCTTCAATGCTAAGTGATTTGTTTTTTACTTTGTTTCGGTGGTCAGAGTTATTTGATACATGTGTTAGTGTGAGGTAGCACGTAGATGTGCACACAGACTAGATTGGATACTATCATTATCTAAAAAAAGTTTGTATTTTTATGGATGGAAACGACAAGAGACCTTCATGTTTAGTGATTTCTTTTCTTCAGTTTTGTGGTCAAAGTTATTTGATACATGTACTAGTGTGAATAGCATGTAGACGTGCACAGTCTAGCTTGGAACTATAATTATCTGAAAAGTGTTGTTTTTTAGTGCTGAACAGAGTCTTAATCACTCTTTGTTTTCTTCCTGTTTTGTTTCTAGGTTGCCATTGCACATACAATTGGGCATGTTGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCT</genome_strand>
        <mrna_strand>CTGATCTTGAATTCTGGAAAACTCTATTCCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGTTGCACATACAATTGGGCATGTGGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAATTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGGGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCCTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTATCTCAAATTGGTCCCCAGATCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690741" ref_strand="+" ref_description="SGN-E690741 [LH_Ea04E19]">
      <seq>catttgaaaactctcttgccggttgccattgcacatacaacttggcatgtggcaactacagtgagcatgtcaaaggtggcagtttcattcactcacatcatcaagagtggtgaacctgcttttagtgttttggtttcaaggttcctcttgggagagtcattccctaccgccgtttacttatctcttatccccatcatcggtggttgtggtctttctgcgcttacagagttgaacttcaactggattggtttctcgggtgctatgatctcgaatgtggcatttgtcttcagaaatatattctccaagaagggtatgaaggggaagtctgttattgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtctctcaaattggtccccagatcgtctggtggatggcggcccagagtgtattttatcacctctacaatcaagtttcgtacatgtctttggatgagatctctcctttgacgtttagtattggaaacaccatgaaacgtatatcagtaattgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcaattcttggaactttcttgtactcacaggcaaaacaatgaagagtggaattttcataccgcgttagggataacagacgttgaagagaaccttgaggtgttgtgaataacgtctctcaggatcctcagactacccttactttgggtttagtatgaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="19639" stop="22658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19940" g_stop="20165" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="247" r_length="226" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20755" g_stop="20977" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="470" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="684" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22226" g_stop="22358" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="816" r_length="132" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E690741" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19940" e_stop="20165"/>
          <exon e_start="20755" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCCATTGCACATACAATTGGGCATGTTGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTA</genome_strand>
        <mrna_strand>GTTGCCATTGCACATACAACTTGGCATGTGGCAACTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTATTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATTGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATTGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCAATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGT-GGAATTTTCATACCGCGTTAGGGATAACAGACGTTGAAGAGAACCTTGAGGTGTTGTGAATAACGTCTCTCAGGATCCTCAGACTACCCTTACTTTGGGTTTAGTATGAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710459" ref_strand="+" ref_description="SGN-E710459 [FA55CA03]">
      <seq>cgttagcatgtcaaaggtggcagtttcattcactcacatcatcaagagtggtgaacctgcttttagtgttttggtttcaaggttcctcttgggagagtcattccctaccgccgtttacttatctcttatccccatcatcggtggttgtggtctttctgcgcttacagagttgaacttcaactggattggtttctcgggtgctatgatctcgaatgtggcatttgtcttcagaaatatattctccaagaagggtatgaaggggaagtctgttagtgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtctctcaaatcggtccccagatcgtctggtggatggcggcccagagtgtattttatcacctctacaatcaagtttcgtacatgtctttggatgagatctctcctttgacgtttagtattggaaacaccatgaaacgtatatcagtaatcgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcgattcttggaactttcttgtactcacaggcaaaacaatgaagagtggggatttgcataccgcgttagggataaaagacgttgaagagaaccttgaggtgttgcgaatgacgtctctcaggatcctcagtctacccttactttgggttgagtatgaaacttatgaagtatgtagatagcaataatgggttaaaattaactcaaatcctatagagttactaaggctggtttccctgttttgttattattattcgtagagacatcaacaagtgtactaataaactgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="19679" stop="22785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19978" g_stop="20165" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20755" g_stop="20977" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="411" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="625" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22226" g_stop="22485" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="885" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E710459" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19978" e_stop="20165"/>
          <exon e_start="20755" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATAC</genome_strand>
        <mrna_strand>CGTTAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603313" ref_strand="-" ref_description="SGN-E603313 [56399]">
      <seq>tcacatcatcaagagtggtgaacctgctttttagtgtttttggtttcaaggttccttcttgggagagtcattcccctaccgccgttttacttatctcttatccccatcatccggtgttgtggtcttctgctcttacagagttgaacttcaactggattggtttctcgggggctatgatctcgaatgtggcatttgtcttcagaaatatattctccaagaagggtatgaaggggaagtctgttagtgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtatctcaaattggtccccagatcgtctggtggatggctgcccagagtgtattttatcacctctacaatcaagtttcatacatgtctttggatgagatctctcctctgacatttagtattggaaacaccatgaaacgtatatcagtaattgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcaattcttggaactttcttgtactcacaggcaaaacaatgaagagtggaatttgcatactgcattagggataaaagacgttgaagagaaccttgaggtgttgcgataacgtctctcaggatcctcggtctaccctcactttgggttgagcatggaacttatgagtatgtagatagcaataatgagttagaattaactcaaatcctatagagttactaaggctggtttccctgttttgttattattcgtagagacatcaacaagtgtactaataaactgaatacttggttgagagtggtataaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="19711" stop="22809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20011" g_stop="20165" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20755" g_stop="20977" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="382" r_length="223" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="596" r_length="214" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22226" g_stop="22509" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="874" r_length="278" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E603313" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603313" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20011" e_stop="20165"/>
          <exon e_start="20755" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATCATCAAGAGTGGTGAACCTGC-TTTTAGTG-TTTTGGTTTCAAGGTTCC-TCTTGGGAGAGTCATT-CCCTACCGCCG-TTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAG</genome_strand>
        <mrna_strand>TCACATCATCAAGAGTGGTGAACCTGCTTTTTAGTGTTTTTGGTTTCAAGGTTCCTTCTTGGGAGAGTCATTCCCCTACCGCCGTTTTACTTATCTCTTATCCCCATCATCCGGTGTTGTGGTC-TTCTGCTCTTACAGAGTTGAACTTCAACTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGGGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTATCTCAAATTGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCTGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCATACATGTCTTTGGATGAGATCTCTCCTCTGACATTTAGTATTGGAAACACCATGAAACGTATATCAGTAATTGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCAATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGT-GGAATTTGCATACTGCATTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCG-ATAACGTCTCTCAGGATCCTCGGTCTACCCTCACTTTGGGTTGAGCATGGAACTTATG-AGTATGTAGATAGCAATAATGAGTTAGAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTG---TTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376438" ref_strand="+" ref_description="SGN-E376438 [TUS-17-D13]">
      <seq>gagagtcattccctaccgccgtttacttatctcttatccccatcatcggtggttgtggtctttctgcgcttacagagttgaacttcaactggattggtttctcgggtgctatgatctcgaatgtggcatttgtcttcagaaatatattctccaagaagggtatgaaggggaagtctgttagtgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtctctcaaatcggtccccagatcgtctggtggatggcggcccagagtgtattttatcacctctacaatcaagtttcgtacatgtctttggatgagatctctcctttgacgtttagtattggaaacaccatgaaacgtatatcagtaatcgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcgattcttggaactttcttgtactcacaggcaaaacaatgaagagtggggatttgcataccgcgttagggataaaagacgttgaagagaaccttgaggtgttgcgaatgacgtctctcaggatcctcagtctacccttactttgggttgagtatgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="19770" stop="22656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20070" g_stop="20165" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20755" g_stop="20977" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="319" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="533" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22226" g_stop="22356" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="664" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E376438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20070" e_stop="20165"/>
          <exon e_start="20755" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACT</genome_strand>
        <mrna_strand>GAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207587" ref_strand="+" ref_description="SGN-E207587 [cLEC-32-M1]">
      <seq>gagagtcattccctaccgccgtttacttatctcttatccccatcatcggtgggtgtggtctttctgcgcttacagagttgaacttcaactggattggtttctcgggtgctatgatctcgaatgtggcatttgtcttcagaaatatattctccaacaagggtatgaaggggaagtctgttaatgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtctctcaaatcggtccccagatcgtctggaggatggcggcccacagtgtattttatcacctcttccatcaagattcgtacatgtctttggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="19770" stop="22126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20070" g_stop="20165" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20755" g_stop="20977" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="319" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21760" g_stop="21826" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="386" r_length="67" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E207587" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20070" e_stop="20165"/>
          <exon e_start="20755" e_stop="20977"/>
          <exon e_start="21760" e_stop="21826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAG</genome_strand>
        <mrna_strand>GAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGGTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAACAAGGGTATGAAGGGGAAGTCTGTTAATGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATGGCGGCCCACAGTGTATTTTATCACCTCTTCCATCAAGATTCGTACATGTCTTTGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588352" ref_strand="+" ref_description="SGN-E588352 [41903]">
      <seq>agagtcattccctaccgccgtttacttatctcttatccccatcatcggtggttgtggtctttctgctcttacagagttgaacttcaactggattggtttctcgggggctatgatctcgaatgtggcatttgtcttcagaaatatattctccaagaagggtatgaaggggaagtctgttagtgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtatctcaaattggtccccagatcgtctggtggatggctgcccagagtgtattttatcacctctacaatcaagtttcatacatgtctttggatgagatctctcctctgacatttagtattggaaacaccatgaaacgtatatcagtaattgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcaattcttggaactttcttgtactcacaggcaaaacaatgaagagtggaatttgcatactgcattagggataaaagacgttgaagagaaccttgaggtgttgcgataacgtctctcaggatcctcggtctaccctcactttgggttgagcatggaacttatgagtatgtagatagcaataatgagttagaattaactcaaatcctatagagttactaaggctggtttccctgtttttgttattattcgtagagacatcaacaagtgtactaataaacctgaataacttggttgagagtggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="19771" stop="22803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20071" g_stop="20165" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20755" g_stop="20977" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="318" r_length="223" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="532" r_length="214" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22226" g_stop="22503" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="807" r_length="275" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E588352" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20071" e_stop="20165"/>
          <exon e_start="20755" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAA-CTGAAT-ACTTGGTTGAGAGTGGTATA</genome_strand>
        <mrna_strand>AGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCTCTTACAGAGTTGAACTTCAACTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGGGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTATCTCAAATTGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCTGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCATACATGTCTTTGGATGAGATCTCTCCTCTGACATTTAGTATTGGAAACACCATGAAACGTATATCAGTAATTGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCAATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGT-GGAATTTGCATACTGCATTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCG-ATAACGTCTCTCAGGATCCTCGGTCTACCCTCACTTTGGGTTGAGCATGGAACTTATG-AGTATGTAGATAGCAATAATGAGTTAGAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTG-TTT-TTGTTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACCTGAATAACTTGGTTGAGAGTGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574123" ref_strand="-" ref_description="SGN-E574123 [33541]">
      <seq>cctacccccgtttacttatctttttatccccatcatcggtggtttgtggtctttttgctcttacagagttgaacttcaattggattggttttctcgggggctaatgatctcgaatgtggcatttgtctttcaagaaatatatttcttcgcaagaaaggggtatgaaggggaagtctgttagtgggatgaactactatgcttgcttgttatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtatctcaaattggtccccagatcgtctggtggatggcggcccagagtgtattttatcacctctacaatcaagtttcatacatgtctttggatgagatctctccattgacatttagtattggaaacaccatgaaacgtatatcagtaattgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcaattcttggaactttcttgtactcacaggcaaaacaatgaagagtggaatttgcatactgcattagggataaaagacgttgaagagaccttgaggtgttgcgataacgtctctcaggatcctcagtctacccttactttgggttgagcatggaacttatgagtatgtagatagcaataatgagttaaaattaactcaaatcctatagagttactaaggctggtttcccctgttttgttattattcgtagagacatcaacaagtgtactaataaactggttgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="19781" stop="22780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20081" g_stop="20165" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20755" g_stop="20977" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="318" r_length="231" r_score="0.901"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="532" r_length="214" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22226" g_stop="22488" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="789" r_length="257" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E574123" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574123" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20081" e_stop="20165"/>
          <exon e_start="20755" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACCGCCGTTTACTTATC-TCTTATCCCCATCATCGGTGG-TTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGG-TTTCTCGGGTGCT-ATGATCTCGAATGTGGCATTTGTC-TTC-AGAAATATA-TTC-TC-CAAG-AA-GGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTG</genome_strand>
        <mrna_strand>CCTACCCCCGTTTACTTATCTTTTTATCCCCATCATCGGTGGTTTGTGGTCTTTTTGCTCTTACAGAGTTGAACTTCAATTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGGGGGCTAATGATCTCGAATGTGGCATTTGTCTTTCAAGAAATATATTTCTTCGCAAGAAAGGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGT-TATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTATCTCAAATTGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCATACATGTCTTTGGATGAGATCTCTCCATTGACATTTAGTATTGGAAACACCATGAAACGTATATCAGTAATTGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCAATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGT-GGAATTTGCATACTGCATTAGGGATAAAAGACGTTGAAGAG-ACCTTGAGGTGTTGCG-ATAACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGCATGGAACTTATG-AGTATGTAGATAGCAATAATGAGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCC-CTGTT-TTGTTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGGTTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694227" ref_strand="+" ref_description="SGN-E694227 [LH_Ea03G01](-)">
      <seq>tatccccatcatcggtggttgtggtctttctgcgcttacagagttgaacttcaactggattggtttctcgggtgctatgatctcgaatgtggcatttgtcttcagaaatatattctccaagaagggtatgaaggggaagtctgttagtgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtctctcaaattggtccccagatcgtctggtggatggcggcccagagtgtattttatcacctctacaatcaagtttcgtacatgtctttggatgagatctctcctttgacgtttagtattggaaacaccatgaaacgtatatcagtaattgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcaattcttggaactttcttgtactcacaggcaaaacaatgaagagtggaattttcataccgcgttagggataaaagacgttgaagagaaccttgaggtgttgtgaataacgtctctcaggatcctcagtctacccttactttgggtttagtatgaaacttatgagtatgtagatagcaataatgggttaaaattaactcaaatcctatagagttactaaggctggtttccctgttttgttattattattggtagagacatcaacaagtgtactaataaactgaatactaggggagagtggtataaattagttcattaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="19804" stop="22825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20104" g_stop="20165" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20755" g_stop="20977" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="285" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="499" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22226" g_stop="22529" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="799" r_length="300" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E694227" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20104" e_stop="20165"/>
          <exon e_start="20755" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACACACATTTG</genome_strand>
        <mrna_strand>TATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATTGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATTGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCAATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGT-GGAATTTTCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGTGAATAACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTTAGTATGAAACTTATG-AGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTGGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTAGG-GGAGAGTGGTATAAATTAGTTCA-TTAAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454579" ref_strand="+" ref_description="SGN-E454579 [cSTS-23-D18]">
      <seq>ggtggttgtggtctttctgctcttacagagttgaacttcaactggattggtttctcgggggctatgatctcgaatgtggcatttgtcttcagaaatatattctccaagaagggtatgaaggggaagtctgttagtgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtatctcaaattggtccccagatcgtctggtggatggcggcccagagtgtattttatcacctctacaatcaagtttcatacatgtctttggatgagatctctccattgacatttagtattggaaacaccatgaaacgtatatcagtaattgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgccattcttggaactttcttgtactcacaggcaaaacaatgaagagtggaatttgcgtactgcattagggataaaagacgttgaagagaccttgaggtggtgcgataacgtctctcangatcctcagtctacccttactttgggttgagcatggaacttatgagtatgtagatagcaataatgagttaaaattaactcaaatcctatagagttactaaggctggtttccctgttttgttattattcgtagagacatcaacaagtgtactaataaactggttgagagtggtataaattagttcatttaagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="19817" stop="22823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20117" g_stop="20165" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20755" g_stop="20977" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="272" r_length="223" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="486" r_length="214" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22226" g_stop="22523" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="769" r_length="283" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E454579" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20117" e_stop="20165"/>
          <exon e_start="20755" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTGGTAATTAGTTAACTTTAACTAGTTGTTAAGACTTAAAGTTCCCCCATCATTTGTGTTGATTCTCTTGCCTGCCGCATGGTAAGCCATTTTTAAATGTCATTATACTTCTATACACAGAACTCTATGGAATTTTGATGGCAAATCATTGGTAGTATAAGAGGATAATACTCCTAGCTGTAAGGCTGTACACGATATGATATGTTCTTTTTTCAAAATTTCCATGAAAATAAAACATCTTTTGGTAACCAAATATCACAATTGACTTGTTCATGGAACACATAATTCCAGGAAATGACCCTTTCTGAGGGTAATTTGGGCTTCTCGAGTTTGGTAATTCTTCAGTTAATGGAAGGATTGTTATGTGATGCATTCAATCACTTGATATTTCTTAGAGACCTTCCATATGAATGAAATTGTATCTGAGTTTTTACTAGGATGATCTGTTTTTTTTTTGTTTAATCAGGGGTAGTGGCATTGACATGTAGTGATGTCTTTGACAATTAAGTTGGTCTTGAGTGTTGAGCACAACTTTACTTATGAATTTGTTTGCTGATGATTTTATCTGGTTTTGTTGGTTTGTCCACGTTAGGTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACACA</genome_strand>
        <mrna_strand>GGTGGTTGTGGTCTTTCTGCTCTTACAGAGTTGAACTTCAACTGGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGGGGGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTATCTCAAATTGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCATACATGTCTTTGGATGAGATCTCTCCATTGACATTTAGTATTGGAAACACCATGAAACGTATATCAGTAATTGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCCATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGT-GGAATTTGCGTACTGCATTAGGGATAAAAGACGTTGAAGAG-ACCTTGAGGTGGTGCG-ATAACGTCTCTCANGATCCTCAGTCTACCCTTACTTTGGGTTGAGCATGGAACTTATG-AGTATGTAGATAGCAATAATGAGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTG---TTATTATTCGTAGAGACATCAACAAGTGTAC---T-AA-T-AA-AC-TGGTTGAGAGTGGTATAAATTAGTTCATTTAAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589616" ref_strand="-" ref_description="SGN-E589616 [43194]">
      <seq>ttctcgggggctatgatctcgaatgtggcatttgtcttcagaaatattttctccaagaagggtatgaagggaaagtctgttagtgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtatctcaaattggtccccagatcgtctggtggatggcggcccagagtgtattttaccacctctacaatcaagtttcatacatgtctttggatgagatctctccattgacatttagtattggaaacaccatgaaacgtatatcagtaattgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgccattcttggaactttcttgtactcacaggcaaaacaatgaagagtggaatttgcatactgcattagggataaaagatgttgaagagaaccttgaggtgttgcgataacgtctctcaggatcctcagtctaccctcactttgggttgagcatggaacttatgagtatgtagatagcaataatgagttagaattaactcaaatcctatagagttactaaggctggtttcccctgttttgttattattcgtagagacatcaancaagtgtactaataaactgaatacttggttgagagtggtataaattagtttatttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="20457" stop="22818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20757" g_stop="20977" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="435" r_length="214" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22226" g_stop="22519" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="725" r_length="290" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E589616" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589616" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20757" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAA-CAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAA</genome_strand>
        <mrna_strand>TTCTCGGGGGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATTTTCTCCAAGAAGGGTATGAAGGGAAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTATCTCAAATTGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTACCACCTCTACAATCAAGTTTCATACATGTCTTTGGATGAGATCTCTCCATTGACATTTAGTATTGGAAACACCATGAAACGTATATCAGTAATTGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCCATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGT-GGAATTTGCATACTGCATTAGGGATAAAAGATGTTGAAGAGAACCTTGAGGTGTTGCG-ATAACGTCTCTCAGGATCCTCAGTCTACCCTCACTTTGGGTTGAGCATGGAACTTATG-AGTATGTAGATAGCAATAATGAGTTAGAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCC-CTGTT-TTGTTATTATTCGTAGAGACATCAANCAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTTATTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376437" ref_strand="+" ref_description="SGN-E376437 [TUS-17-D13](-)">
      <seq>tatgaaggggaagtctgttagtgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtctctcaaatcggtccccagatcgtctggtggatggcggcccagagtgtattttatcacctctacaatcaagtttcgtacatgtctttggatgagatctctcctttgacgtttagtattggaaacaccatgaaacgtatatcagtaatcgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcgattcttggaactttcttgtactcacaggcaaaacaatgaagagtggggatttgcataccgcgttagggataaaagacgttgaagagaaccttgaggtgttgcgaatgacgtctctcaggatcctcagtctacccttactttgggttgagtatgaaacttatgaagtatgtagatagcaataatgggttaaaattaactcaaatcctatagagttactaaggctggtttccctgttttgttattattattcgtagagacatcaacaagtgtactaataaactgaatacttggttgagagtggtataaattagttcatttaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="20519" stop="22825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20819" g_stop="20977" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="373" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22226" g_stop="22529" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="677" r_length="304" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E376437" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20819" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACACACATTTG</genome_strand>
        <mrna_strand>TATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351558" ref_strand="+" ref_description="SGN-E351558 [cTOS-12-O12]">
      <seq>gaagtctgttagtgggatgaactactatgcttgcttgtctatgctgtctttgttgattctcacaccatttgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtctctcaaatcggtccccagatcgtctggtggatggcggcccagagtgtattttatcacctctacaatcaagtttcgtacatgtctttggatgagatctctcctttgacgtttagtattggaaacaccatgaaacgtatatcagtaatcgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcgattcttggaactttcttgtactcacaggcaaaacaatgaagagtggggatttgcataccgcgttagggataaaagacgttgaagagaaccttgaggtgttgcgaatgacgtctctcaggatcctcagtctacccttactttgggttgagtatgaaacttatgaagtatgtagatagcaataatgggttaaaattaactcaaatcctatagagttactaaggctgggttccctggtttnngttatatattcgtagagacatcaancagtgtactaataaactgaatacttggntgagagtggtataaattagttcatttaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="20528" stop="22821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20828" g_stop="20977" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="364" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22226" g_stop="22522" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="661" r_length="297" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E351558" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20828" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTAT-TATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACAC</genome_strand>
        <mrna_strand>GAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGGTTCCCTGGTTT-NNGTTATATATTCGTAGAGACATCAANCAGTGTACTAATAAACTGAATACTTGGNTGAGAGTGGTATAAATTAGTTCATTTAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201539" ref_strand="+" ref_description="SGN-E201539 [cLEC-4-B16]">
      <seq>ttgcttgtctatgctgtctttgttgattctcacaccatgtgccattgctgttgagggaccacaaatgtgggctctaggatttgaaaaggctgtctctcaaatcggtccccagatcgtctggtggatggcggcccacagtgtattttatcacctctacaatcaagtttcgtacatgtctttggatgagatctctcctttgacgtttagtattggaaacaccatgaaacgtatatcaagaatcgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcgattcttggaactttcttgtactcacaggcaaaacaatgaagagtggggatttgcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="20558" stop="22556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20858" g_stop="20977" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="334" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22226" g_stop="22256" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="365" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E201539" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20858" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATAC</genome_strand>
        <mrna_strand>TTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATGTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCACAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAAGAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGTGGGGATTTGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690869" ref_strand="+" ref_description="SGN-E690869 [LH_Ea04K03]">
      <seq>tctcaaattggtccccagatcgtctggtggatggcggcccagagtgtattttatcacctctacaatcaagtttcgtacatgtctttggatgagatctctcctttgacgtttagtattggaaacaccatgaaacgtatatcagtaattgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcaattcttggaactttcttgtactcacaggcaaaacaatgaagagtggaattttcataccgcgttagggataaaagacgttgaagagaaccttgaggtgttgtgaataacgtctctcaggatcctcagtctacccttactttgggtttagtatgaaacttatgagtatgtagatagcaataatgggttaaaattaactcaaatcctatagagttactaaggctggtttcccttttttgttattattattcgtagagacatcaacaagtgtactaataaactgaatacttggttgagagtggtataaattagttcatttaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="20652" stop="22825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20952" g_stop="20977" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="240" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22226" g_stop="22530" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="543" r_length="303" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E690869" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20952" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACACACATTTGG</genome_strand>
        <mrna_strand>TCTCAAATTGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATTGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCAATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGT-GGAATTTTCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGTGAATAACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTTAGTATGAAACTTATG-AGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTTTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694709" ref_strand="+" ref_description="SGN-E694709 [LH_Ea04K03](-)">
      <seq>ctcaaattggtccccagatcgtctggtggatggcggcccagagtgtattttatcacctctacaatcaagtttcgtacatgtctttggatgagatctctcctttgacgtttagtattggaaacaccatgaaacgtatatcagtaattgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcaattcttggaactttcttgtactcacaggcaaaacaatgaagagtggaattttcataccgcgttagggataaaagacgttgaagagaaccttgaggtgttgtgaataacgtctctcaggatcctcagtctacccttactttgggtttagtatgaaacttatgagtatgtagatagcaataatgggttaaaattaactcaaatcctatagagttactaaggctggtttcccttttttgttattattaatggtagagacatcaacaagtgtactaataaactgacttatatgttgagagtggtataaattagttcatttaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="20653" stop="145135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20953" g_stop="20977" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21760" g_stop="21973" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="239" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22226" g_stop="22534" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="545" r_length="306" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E694709" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20953" e_stop="20977"/>
          <exon e_start="21760" e_stop="21973"/>
          <exon e_start="22226" e_stop="22534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATCGGTCCCCAGATCGTCTGGTAATCACATGACTGCCATCCTATCTGTTTTTTTACATTTTGTGTCATCAGTACTTTGCCGTAAATGGCTCCGGTCAAATAATACCCCCTCCCTTACGCTTCATGTGGCAAGGTTGAGCGTACGAGGGTTGAAGTATTCAATTATTTAAGCTTTTGGAAATAAAATTTACATATTTGGAAACTTTTATATGTCATAATAGGTGATGAATCAAACTATTTAAGAAAGGTGTGGTCATGGAAACAAAGAGTGTACTAATGTTGTCACTTAAACTGAAACAAAGAGTGTACTACATTTGACTAGAGTAACTTTAATCATTTTAGAGATTTATATGTAAATTGAAAATGTAGAGAACTTTTAGTGCTAGAGAAAACTAGGTTTATCAATATTATGTAACATGCTTAAATAGAGCCACACTTGAGATTGAGGCGTTTGTCATCGTTATTGATTCCCGTAAGTTGTTCTGGTGTAAGAGCACTTCATCTGAATTTTAGTACTCATAGAATTTGTACACCACTTAACACTAGCTTAGCTTTCCCTTGTCTCAATCTATTTCAGATCGCCCCTTACTTCCTCGTACTATCTTAATGTGCCTGCTCCGTCCTCCTTTGACAAAAGATAATGCGGGCTCTTCAAGTCCAGCCCTAGAAGTGAGAATTGTGTGTGAGCGCATTGCTTCATCTTAATTTTACTACTCGTAGAACAATTTAACGCACTAGTTGTGTAAAGAGTAACTGATATGTGAGCGAGTGAAATTGGTACTAAGAATGTTTATTGATAACAGGTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACACACATTTGGTTAA</genome_strand>
        <mrna_strand>CTCAAATTGGTCCCCAGATCGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATTGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCAATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGT-GGAATTTTCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGTGAATAACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTTAGTATGAAACTTATG-AGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTTTTTTGTTATTATTAATGGTAGAGACATCAACAAGTGTACTAATAAACTGACTTATATGTTGAGAGTGGTATAAATTAGTTCATTT-AACAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213135" ref_strand="-" ref_description="SGN-E213135 [cLEC-72-K9]">
      <seq>ccagagtgtattttatcacctctacaatcaagtttcgtacatgtctttggatgagatctctcctttgacgtttagtattggaaacaccatgaaacgtatatcagtaatcgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcgattcttggaactttcttgtactcacaggcaaaacaatgaagagtggggatttgcataccgcgttagggataaaagacgttgaagagaaccttgaggtgttgcgaatgacgtctctcaggatcctcagtctacccttactttgggttgagtatgaaacttatgaagtatgtagatagcaataatgggttaaaattaactcaaatcctatagagttactaaggctggtttccctgttttgttattattattcgtagagacatcaacaagtgtactaataaactgaatacttggttgagagtggtataaattagttcatttaaacacaaaaaaaaaaaaaaaaaaccggatattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="21472" stop="82964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21772" g_stop="21973" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22226" g_stop="22552" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="529" r_length="327" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E213135" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213135" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21772" e_stop="21973"/>
          <exon e_start="22226" e_stop="22552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACACACATTTGGTTAATAAACCTCCCAGAATTTG</genome_strand>
        <mrna_strand>CCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACACAAAAAAAAAAAAAAAAAACCGGATATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598253" ref_strand="+" ref_description="SGN-E598253 [73923]">
      <seq>cagagtgtattttatcacctctacaatcaagtttcatacatgtctttggatgagatctctccattgacatttagtattggaaacaccatgaaacgtatatcagtaattgtctcttccatcattatcttccgtacacccgtccagccagtcaacgctcttggagctgccattgcaattcttggaactttcttgtactcacaggcaaaacaatgaagagtggaatttgcatactgcattagggataaaagacgttgaagagaccttgaggtgttgcgataacgtctctcaggatcctcagtctacccttactttgggttgagcatggaacttatgagtatgtagatagcaataatgagttaaaattaactcaaatcctatagagttactaaggctggtttccctgttttgttattattcgtagagacatcaacaagtgtactaataaactggttgagagtggtataaattagttcatttaagcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="21473" stop="22825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21773" g_stop="21973" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22226" g_stop="22481" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="450" r_length="249" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="494"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E598253" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21773" e_stop="21973"/>
          <exon e_start="22226" e_stop="22481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGA</genome_strand>
        <mrna_strand>CAGAGTGTATTTTATCACCTCTACAATCAAGTTTCATACATGTCTTTGGATGAGATCTCTCCATTGACATTTAGTATTGGAAACACCATGAAACGTATATCAGTAATTGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCAATTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGT-GGAATTTGCATACTGCATTAGGGATAAAAGACGTTGAAGAG-ACCTTGAGGTGTTGCG-ATAACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGCATGGAACTTATG-AGTATGTAGATAGCAATAATGAGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTG---TTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220453" ref_strand="+" ref_description="SGN-E220453 [cLEL-12-E1](-)">
      <seq>ttcttggaactttcttgtactcacaggcaaaacaatgaagagtggggatttgcataccgcgttagggataaaagacgttgaaaagaaccttgaggtgttgcgaataacgtctctcaggatcctcagtctacccttactttgggttgagtatgaaacttatgaagtatgtagatagcaataatgggttaaaattaactcaaatcctatagagttactaaggctggtttccctgttttgttattattattcgtagagacatcaacaagtgtactaataaactgaatacttggttgagagtggtataaattagttcatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="21648" stop="82963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21948" g_stop="21973" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22226" g_stop="22535" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="336" r_length="310" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E220453" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21948" e_stop="21973"/>
          <exon e_start="22226" e_stop="22535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGGAACTTTCTTGTACTCACAGGTGATAATTTCATTTTTTGCCTTTTTGTATCAGTTCTGATAATTGATTGTTCTTTCCTTGATATATATAAACTTCGAAAATCTTTAGCTTTTTCCACTTGAAGGAGTTTTCTCCGTAACTTTTGTCATTGTAAACACGAAAATATTGGAATGATATGTTACCAACTAGCTTGGGAGTTTTTTGTTTGTTTGTTTGTTTATCATTTTCATTGCTAGTCTCTAATAAACCTAAAACTCTTTGAATGTTATGCAGGCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACACACATTTGGTTAAT</genome_strand>
        <mrna_strand>TTCTTGGAACTTTCTTGTACTCACAG............................................................................................................................................................................................................................................................GCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAAAGAACCTTGAGGTGTTGCGAATAACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352480" ref_strand="-" ref_description="SGN-E352480 [cTOS-9-K7]">
      <seq>ataaagatgttcagcctgttattaaatattggaaggttggagggaaaagttggtaccacttgtcccaaagagttatctgtactttaaaggtaacttttctgttttatagcagaaacgaattttgtaagttaaataaagatgtcttgttagagctgtagattcatgaacccagaacccagttctattgatcgttaatcggtccacaaaatttcactttaatcggtcctctgatcgatcaatgtcaaacatgtatcgctaatttaggcatgctgtttatttgagccaaattctgggaggtttattaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="23135" stop="22226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22835" g_stop="22540" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="304" polyA_stop="327"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E352480" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352480" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22835" e_stop="22540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGATGTTCAGACTGCTATTAAATATTTGAAGGTTTGATGGAAAAGTTCGTAACACTTGTCCCAAAGAGTTATCTGTACTTTAAAGGTAACTTTTCTGTTTTATAGCAGAAACGAATTTTGTAAGTTAAATAAAGATGTCTTGTTAGAGCTGTAGATTCATGAACCCAGAACCCAGTTCTATTGATCGTTAATCGGTCCACAAAATTTCACTTTAATCGGTCCTCTGATCGATCAATGTCAAACATGTATCGCTAATTTAGGCATGCTGTTTATTTGAGCCAAATTCTGGGAG</genome_strand>
        <mrna_strand>ATAAAGATGTTCAGCCTGTTATTAAATATTGGAAGGTTGGAGGGAAAAGTTGGTACCACTTGTCCCAAAGAGTTATCTGTACTTTAAAGGTAACTTTTCTGTTTTATAGCAGAAACGAATTTTGTAAGTTAAATAAAGATGTCTTGTTAGAGCTGTAGATTCATGAACCCAGAACCCAGTTCTATTGATCGTTAATCGGTCCACAAAATTTCACTTTAATCGGTCCTCTGATCGATCAATGTCAAACATGTATCGCTAATTTAGGCATGCTGTTTATTTGAGCCAAATTCTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538013" ref_strand="+" ref_description="SGN-E538013 [TUS-56-O16](-)">
      <seq>ccatgatggtagggagttccatgcagtgattggtaaagaaccaaggaagcaatcattgaaaaagtggggcgggaaaccagacgtgcttgttgcatgtgttggtggaggttcaaatgctatgggactctttcatgagtttgttgatgacaaagatgtgaggttgattggggttgaagcagcaggttttggtctagatagtagtaaacatgccgccactttgacaaagggtgaggtaggagtactgcatggagctatgagttatctactgcaagacgaagatgggcagattgttgagcctcattctatcagtgccggattggattacccaggagttgggccagaacacagctttttgaaagatctcggtagagcagaatattatagcatcacagatgaggaggctttggaagccttcaaaaggttatctcggttagagggtatcatccccgctctggaaacatctcatgctctcgcctacttagagaagctgtgtccaactctagcaaatggaactaaggtcgtgctcaactgcagcggtagaggcgataaagatgttcagactgctattaaatatttgaaggtttgatggaaaagttcgtaacacttgtcccaaagagttatctgtactttaaaggtaacttttctgttttatagcagaaacgaattttgtaagttaaataaagatgtcttgttagagctgtagattcatgaacccagaacccagttctattgatcgttaatcggtccacaaaatttcactttaatcggtcctctgatcgatcaatgtcaaacatgtatcgctaatttaggcatgctgtttatttgagccaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="23981" stop="22249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23681" g_stop="23366" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23365" i_stop="23210" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23209" g_stop="23115" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="410" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23114" i_stop="22971" i_length="144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22970" g_stop="22541" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="840" r_length="430" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E538013" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23681" e_stop="23366"/>
          <exon e_start="23209" e_stop="23115"/>
          <exon e_start="22970" e_stop="22541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTAAAGAAACAAGGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAAAGATGTGAGGTTGATTGGGGTTGAAGCAGCAGGTTTTGGTCTAGATAGTAGTAAACATGCCGCCACTTTGACAAAGGGTGAGGTAGGAGTACTGCATGGAGCTATGAGTTATCTACTGCAAGACGAAGATGGGCAGATTGTTGAGCCTCATTCTATCAGTGCCGGGTAATAACTTGAACCTTGCTTGTTACTAATGTGCTCATTTTGTGTGCTACTACAAAATCCTATGCATACACTTGACGCTACTGAAATAAAGTGTATTTGGTCAAATCAAATCATTGTATCTCTTAACTGGTTTTGTTCCCCCAATGGATTTATTAGATTGGATTACCCAGGAGTTGGGCCAGAACACAGCTTTTTGAAAGATCTCGGTAGAGCAGAATATTATAGCATCACAGATGAGGAGGCTTTGGAAGGTGATAAATGATTTCTCACTTATTCTTTGTTCTAAACTTTTACATATTATTTTCTAGTTTGTAACTGTCTTTCACTTTTGCTGCATTTTCATGATGCATCTTACAAACCTGTTTGTTGTTTCACGTAATGCCTCATGTTTGCAGCCTTCAAAAGGTTATCTCGGTTAGAGGGTATCATCCCCGCTCTGGAAACATCTCATGCTCTCGCCTACTTAGAGAAGCTGTGTCCAACTCTAGCAAATGGAACTAAGGTCGTGCTCAACTGCAGCGGTAGAGGCGATAAAGATGTTCAGACTGCTATTAAATATTTGAAGGTTTGATGGAAAAGTTCGTAACACTTGTCCCAAAGAGTTATCTGTACTTTAAAGGTAACTTTTCTGTTTTATAGCAGAAACGAATTTTGTAAGTTAAATAAAGATGTCTTGTTAGAGCTGTAGATTCATGAACCCAGAACCCAGTTCTATTGATCGTTAATCGGTCCACAAAATTTCACTTTAATCGGTCCTCTGATCGATCAATGTCAAACATGTATCGCTAATTTAGGCATGCTGTTTATTTGAGCCAAATTCTGGGA</genome_strand>
        <mrna_strand>CCATGATGG-TAGGGAGTTCCATGCAGTGATTGGTAAAGAACCAAGGAAGCAATCATTGAAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAAAGATGTGAGGTTGATTGGGGTTGAAGCAGCAGGTTTTGGTCTAGATAGTAGTAAACATGCCGCCACTTTGACAAAGGGTGAGGTAGGAGTACTGCATGGAGCTATGAGTTATCTACTGCAAGACGAAGATGGGCAGATTGTTGAGCCTCATTCTATCAGTGCCGG............................................................................................................................................................ATTGGATTACCCAGGAGTTGGGCCAGAACACAGCTTTTTGAAAGATCTCGGTAGAGCAGAATATTATAGCATCACAGATGAGGAGGCTTTGGAAG................................................................................................................................................CCTTCAAAAGGTTATCTCGGTTAGAGGGTATCATCCCCGCTCTGGAAACATCTCATGCTCTCGCCTACTTAGAGAAGCTGTGTCCAACTCTAGCAAATGGAACTAAGGTCGTGCTCAACTGCAGCGGTAGAGGCGATAAAGATGTTCAGACTGCTATTAAATATTTGAAGGTTTGATGGAAAAGTTCGTAACACTTGTCCCAAAGAGTTATCTGTACTTTAAAGGTAACTTTTCTGTTTTATAGCAGAAACGAATTTTGTAAGTTAAATAAAGATGTCTTGTTAGAGCTGTAGATTCATGAACCCAGAACCCAGTTCTATTGATCGTTAATCGGTCCACAAAATTTCACTTTAATCGGTCCTCTGATCGATCAATGTCAAACATGTATCGCTAATTTAGGCATGCTGTTTATTTGAGCCAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539929" ref_strand="-" ref_description="SGN-E539929 [TUS-59-P2]">
      <seq>agcaatcattggaaaagtgggcgggaaacccagacgtgcttgttgcatgtgttggtggaggttcaaatgctatgggactctttcatgagtttgttgatgacaaagatgtgaggttgattggggttgaagcagcaggttttggtctagatagtagtaaacatgccgccactttgacaaagggtgaggtaggagtactgcatggagctatgagttatctactgcaagacgaagatgggcagattgttgagcctcattctatcagtgccggattggattacccaggagttgggccagaacacagctttttgaaagatctcggtagagcagaatattatagcatcacagatgaggaggctttggaagccttcaaaaggttatctcggttagagggtatcatccccgctctggaaacatctcatgctctcgcctacttagagaagctgtgtccaactctagcaaatggaactaaggtcgtgctcaactgcagcggtagaggcgataaagatgttcagactgctattaaatatttgaaggtttgatggaaaagttcgtaacacttgtcccaaagagttatctgtactttaaaggtaacttttctgttttatagcagaaacgaattttgtaagttaaataaagatgtcttgttagagctgtagattcatgaacccagaacccagttctattgatcgttaatcggtccacaaaatttcactttaatcggtcctctgatcgatcaatgtcaaacatgtatcgctaatttaggcatgctgtttatttgagccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="23933" stop="22249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23633" g_stop="23366" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23365" i_stop="23210" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23209" g_stop="23115" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="363" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23114" i_stop="22971" i_length="144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22970" g_stop="22544" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="790" r_length="427" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E539929" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539929" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23633" e_stop="23366"/>
          <exon e_start="23209" e_stop="23115"/>
          <exon e_start="22970" e_stop="22544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAAAGATGTGAGGTTGATTGGGGTTGAAGCAGCAGGTTTTGGTCTAGATAGTAGTAAACATGCCGCCACTTTGACAAAGGGTGAGGTAGGAGTACTGCATGGAGCTATGAGTTATCTACTGCAAGACGAAGATGGGCAGATTGTTGAGCCTCATTCTATCAGTGCCGGGTAATAACTTGAACCTTGCTTGTTACTAATGTGCTCATTTTGTGTGCTACTACAAAATCCTATGCATACACTTGACGCTACTGAAATAAAGTGTATTTGGTCAAATCAAATCATTGTATCTCTTAACTGGTTTTGTTCCCCCAATGGATTTATTAGATTGGATTACCCAGGAGTTGGGCCAGAACACAGCTTTTTGAAAGATCTCGGTAGAGCAGAATATTATAGCATCACAGATGAGGAGGCTTTGGAAGGTGATAAATGATTTCTCACTTATTCTTTGTTCTAAACTTTTACATATTATTTTCTAGTTTGTAACTGTCTTTCACTTTTGCTGCATTTTCATGATGCATCTTACAAACCTGTTTGTTGTTTCACGTAATGCCTCATGTTTGCAGCCTTCAAAAGGTTATCTCGGTTAGAGGGTATCATCCCCGCTCTGGAAACATCTCATGCTCTCGCCTACTTAGAGAAGCTGTGTCCAACTCTAGCAAATGGAACTAAGGTCGTGCTCAACTGCAGCGGTAGAGGCGATAAAGATGTTCAGACTGCTATTAAATATTTGAAGGTTTGATGGAAAAGTTCGTAACACTTGTCCCAAAGAGTTATCTGTACTTTAAAGGTAACTTTTCTGTTTTATAGCAGAAACGAATTTTGTAAGTTAAATAAAGATGTCTTGTTAGAGCTGTAGATTCATGAACCCAGAACCCAGTTCTATTGATCGTTAATCGGTCCACAAAATTTCACTTTAATCGGTCCTCTGATCGATCAATGTCAAACATGTATCGCTAATTTAGGCATGCTGTTTATTTGAGCCAAATTCTG</genome_strand>
        <mrna_strand>AGCAATCATTGGAAAAGTGGGCGGGAAACCCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAAAGATGTGAGGTTGATTGGGGTTGAAGCAGCAGGTTTTGGTCTAGATAGTAGTAAACATGCCGCCACTTTGACAAAGGGTGAGGTAGGAGTACTGCATGGAGCTATGAGTTATCTACTGCAAGACGAAGATGGGCAGATTGTTGAGCCTCATTCTATCAGTGCCGG............................................................................................................................................................ATTGGATTACCCAGGAGTTGGGCCAGAACACAGCTTTTTGAAAGATCTCGGTAGAGCAGAATATTATAGCATCACAGATGAGGAGGCTTTGGAAG................................................................................................................................................CCTTCAAAAGGTTATCTCGGTTAGAGGGTATCATCCCCGCTCTGGAAACATCTCATGCTCTCGCCTACTTAGAGAAGCTGTGTCCAACTCTAGCAAATGGAACTAAGGTCGTGCTCAACTGCAGCGGTAGAGGCGATAAAGATGTTCAGACTGCTATTAAATATTTGAAGGTTTGATGGAAAAGTTCGTAACACTTGTCCCAAAGAGTTATCTGTACTTTAAAGGTAACTTTTCTGTTTTATAGCAGAAACGAATTTTGTAAGTTAAATAAAGATGTCTTGTTAGAGCTGTAGATTCATGAACCCAGAACCCAGTTCTATTGATCGTTAATCGGTCCACAAAATTTCACTTTAATCGGTCCTCTGATCGATCAATGTCAAACATGTATCGCTAATTTAGGCATGCTGTTTATTTGAGCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288020" ref_strand="-" ref_description="SGN-E288020 [cLES-7-J5]">
      <seq>agattgttgagcctcattctatcagtgccggattggattacccaggagttgggccagaacacagctttttgaaagatctcggtagagcagaatattatagcatcacagatgaggaggctttgnaagccttcaaaaggttatctcggttagagggtatcatcnccgctctggaaacatctcatgctctcgcctacttagagaagctgtgtccaactctagcaaatggaactaaggtcgtgctcaactgcagcggtagaggcgataaagatgttcagactgctattaaatatttgaaggtttgatggaaaagttcgtaacacttgtcccaaagagttatctgtactttaaaggtaacttttctgttttatagcagaaacgaattttgtaagttaaataaagatgtcttgttagagctgtagattcatgaacccagaacccagttctattgatcgttaatcggtccacaaaatttcactttaatcggtcctctgatcgatcaatgtcaaacatgtatcgctaatttaggcatgctgtttatttgaaccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="23696" stop="22249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23396" g_stop="23366" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23365" i_stop="23210" i_length="156">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23209" g_stop="23115" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="126" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23114" i_stop="22971" i_length="144">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22970" g_stop="22545" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="552" r_length="426" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E288020" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288020" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23396" e_stop="23366"/>
          <exon e_start="23209" e_stop="23115"/>
          <exon e_start="22970" e_stop="22545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTTGAGCCTCATTCTATCAGTGCCGGGTAATAACTTGAACCTTGCTTGTTACTAATGTGCTCATTTTGTGTGCTACTACAAAATCCTATGCATACACTTGACGCTACTGAAATAAAGTGTATTTGGTCAAATCAAATCATTGTATCTCTTAACTGGTTTTGTTCCCCCAATGGATTTATTAGATTGGATTACCCAGGAGTTGGGCCAGAACACAGCTTTTTGAAAGATCTCGGTAGAGCAGAATATTATAGCATCACAGATGAGGAGGCTTTGGAAGGTGATAAATGATTTCTCACTTATTCTTTGTTCTAAACTTTTACATATTATTTTCTAGTTTGTAACTGTCTTTCACTTTTGCTGCATTTTCATGATGCATCTTACAAACCTGTTTGTTGTTTCACGTAATGCCTCATGTTTGCAGCCTTCAAAAGGTTATCTCGGTTAGAGGGTATCATCCCCGCTCTGGAAACATCTCATGCTCTCGCCTACTTAGAGAAGCTGTGTCCAACTCTAGCAAATGGAACTAAGGTCGTGCTCAACTGCAGCGGTAGAGGCGATAAAGATGTTCAGACTGCTATTAAATATTTGAAGGTTTGATGGAAAAGTTCGTAACACTTGTCCCAAAGAGTTATCTGTACTTTAAAGGTAACTTTTCTGTTTTATAGCAGAAACGAATTTTGTAAGTTAAATAAAGATGTCTTGTTAGAGCTGTAGATTCATGAACCCAGAACCCAGTTCTATTGATCGTTAATCGGTCCACAAAATTTCACTTTAATCGGTCCTCTGATCGATCAATGTCAAACATGTATCGCTAATTTAGGCATGCTGTTTATTTGAGCCAAATTCT</genome_strand>
        <mrna_strand>AGATTGTTGAGCCTCATTCTATCAGTGCCGG............................................................................................................................................................ATTGGATTACCCAGGAGTTGGGCCAGAACACAGCTTTTTGAAAGATCTCGGTAGAGCAGAATATTATAGCATCACAGATGAGGAGGCTTTGNAAG................................................................................................................................................CCTTCAAAAGGTTATCTCGGTTAGAGGGTATCATCNCCGCTCTGGAAACATCTCATGCTCTCGCCTACTTAGAGAAGCTGTGTCCAACTCTAGCAAATGGAACTAAGGTCGTGCTCAACTGCAGCGGTAGAGGCGATAAAGATGTTCAGACTGCTATTAAATATTTGAAGGTTTGATGGAAAAGTTCGTAACACTTGTCCCAAAGAGTTATCTGTACTTTAAAGGTAACTTTTCTGTTTTATAGCAGAAACGAATTTTGTAAGTTAAATAAAGATGTCTTGTTAGAGCTGTAGATTCATGAACCCAGAACCCAGTTCTATTGATCGTTAATCGGTCCACAAAATTTCACTTTAATCGGTCCTCTGATCGATCAATGTCAAACATGTATCGCTAATTTAGGCATGCTGTTTATTTGAACCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729989" ref_strand="+" ref_description="SGN-E729989 [LA22CH02]">
      <seq>gccctctttattttgctgagcgacttactgagcattataaacgtccagatggtgaagggccaatgatctacctgaagagagaagatttaaaccacacgggtgcccacaaaatcaataatgctgttgcgcaagctttgcttgccaagcgcttgggaaagaaacgcattattgccgagacaggggctggtcagcatggtgttgccactgcaactgtttgtgctcggtttggtttggactgtgttatttatatgggtgctcaagatatggagaggcaagcattgaatgtcttcagaatgcgactgcttggagctgaggttagagcagtccactctggaactgctactctcaaggatgctacttcagaagctataagggattgggttacaaatgttgaaacaactcactacatacttggatctgttgcaggaccacacccttaccccatgatggttagggagttccatgcagtgattggtaaagaaacaaggaagcaatcattggaaaagtggggcgggaaaccagacgtgcttgttgcatgtgttggtggaggttcaaatgctatgggactctttcatgagtttgttgatgacaaagatgtgaggttgattggggttgaagcagcaggttttggtctagatagtagtaaacatgccgccactttgacaaagggtgaggtaggagtactgcatggagctatgagttatctactgcaagacgaagatgggcagattgttgagcctcattctatcagtgccggattggattacccaggagttgggccagaacacagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="25182" stop="22873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24882" g_stop="24569" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24568" i_stop="23809" i_length="760">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23808" g_stop="23366" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="757" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23365" i_stop="23210" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23209" g_stop="23173" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="794" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E729989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24882" e_stop="24569"/>
          <exon e_start="23808" e_stop="23366"/>
          <exon e_start="23209" e_stop="23173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAGGTCTGTATGATACAGTATAAATTGACCACTCTGATCATAGCTTACTTGAGGAGAGATTGAAAATTAATTAAATATCCACTGATTAACTTTATGGTTTCACTAAGATTTCTGCACCTTCTAATAATTGACTGGGTTATCTGCAATAACATCAACTTGTTCAGTAAAATCCTGTGGTTTCTTCTTCCCTACGTTCCACAGATGAATTTCGCTGTAAATGTACTGTGTTTTTCGCATATTCATAAATTCTCAATTGCAGGAATGATTAGTAAGTGTGGTCCATAGGTACAGGAACAAAAGGTTGAGTGCAAAATATTGGTTAATGGGGAGAACAGAATGTGATATGAATAATGATATCCATGAACTTAGGGAGTAGGATAAGATGTATACAGACGGGGAGGGGCAATCTTATTAAAATCCATGAATCAGTCAAATATTTGCAAAGTGAGAAGTTGCCGGGAAATTTTCTTGTTTTGCATTACCTACACTGCCTCTATATTCTTTTTTTTTTTTTTGAAAATATTACCTTGCCTCTATTTTGATCTGAAGACCATTTAGAATTCTATTTAGGGCTTGAGGACCGTGGTTTGCTGAACCATCGCCTTTCTTCTATTATATATGTCCCTTTAAATGGTTAAGCTTCTTCTTTTTCCCCTCTTATTCTTGGGATAAGTTACATAATTTTATGTTATACTTTGTAAGAGATCTTTCTATTGGATTTGAATCACTGTACTTAATTACATCTCCAAAATTAACATTGCAGGTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTAAAGAAACAAGGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAAAGATGTGAGGTTGATTGGGGTTGAAGCAGCAGGTTTTGGTCTAGATAGTAGTAAACATGCCGCCACTTTGACAAAGGGTGAGGTAGGAGTACTGCATGGAGCTATGAGTTATCTACTGCAAGACGAAGATGGGCAGATTGTTGAGCCTCATTCTATCAGTGCCGGGTAATAACTTGAACCTTGCTTGTTACTAATGTGCTCATTTTGTGTGCTACTACAAAATCCTATGCATACACTTGACGCTACTGAAATAAAGTGTATTTGGTCAAATCAAATCATTGTATCTCTTAACTGGTTTTGTTCCCCCAATGGATTTATTAGATTGGATTACCCAGGAGTTGGGCCAGAACACAGCTTT</genome_strand>
        <mrna_strand>GCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTAAAGAAACAAGGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAAAGATGTGAGGTTGATTGGGGTTGAAGCAGCAGGTTTTGGTCTAGATAGTAGTAAACATGCCGCCACTTTGACAAAGGGTGAGGTAGGAGTACTGCATGGAGCTATGAGTTATCTACTGCAAGACGAAGATGGGCAGATTGTTGAGCCTCATTCTATCAGTGCCGG............................................................................................................................................................ATTGGATTACCCAGGAGTTGGGCCAGAACACAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370882" ref_strand="+" ref_description="SGN-E370882 [TUS-27-B1]">
      <seq>tgcccacaaaatcaataatgctgttgcgcaagctttgcttgccaagcgcttgggaaagaaacgcattattgccgagacaggggctggtcagcatggtgttgccactgcaactgtttgtgctcggtttggtttggactgtgttatttatatgggtgctcaagatatggagaggcaagcattgaatgtcttcagaatgcgactgcttggagctgaggttagagcagtccactctggaactgctactctcaaggatgctacttcagaagctataagggattgggttacaaatgttgaaacaactcactacatacttggatctgttgcaggaccacacccttaccccatgatggttagggagttccatgcagtgattggtaaagaaacaaggaagcaatcattggaaaagtggggcgggaaaccagacgtgcttgttgcatgtgttggtggaggttcaaatgctatgggactctttcatgagtttgttgatgacaaagatgtgaggttgattggggttgaagcagcaggttttggtctagatagtagtaaacatgccgccactttgacaaagggtgaggtaggagtactgcatggagctatgagttatctactgcaagacgaagatgggcagattgttgagcctcattctatcagtgccggattggatacccaggagttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="25082" stop="23064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24782" g_stop="24569" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24568" i_stop="23809" i_length="760">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23808" g_stop="23366" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="657" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23365" i_stop="23210" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23209" g_stop="23188" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="678" r_length="21" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E370882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24782" e_stop="24569"/>
          <exon e_start="23808" e_stop="23366"/>
          <exon e_start="23209" e_stop="23188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAGGTCTGTATGATACAGTATAAATTGACCACTCTGATCATAGCTTACTTGAGGAGAGATTGAAAATTAATTAAATATCCACTGATTAACTTTATGGTTTCACTAAGATTTCTGCACCTTCTAATAATTGACTGGGTTATCTGCAATAACATCAACTTGTTCAGTAAAATCCTGTGGTTTCTTCTTCCCTACGTTCCACAGATGAATTTCGCTGTAAATGTACTGTGTTTTTCGCATATTCATAAATTCTCAATTGCAGGAATGATTAGTAAGTGTGGTCCATAGGTACAGGAACAAAAGGTTGAGTGCAAAATATTGGTTAATGGGGAGAACAGAATGTGATATGAATAATGATATCCATGAACTTAGGGAGTAGGATAAGATGTATACAGACGGGGAGGGGCAATCTTATTAAAATCCATGAATCAGTCAAATATTTGCAAAGTGAGAAGTTGCCGGGAAATTTTCTTGTTTTGCATTACCTACACTGCCTCTATATTCTTTTTTTTTTTTTTGAAAATATTACCTTGCCTCTATTTTGATCTGAAGACCATTTAGAATTCTATTTAGGGCTTGAGGACCGTGGTTTGCTGAACCATCGCCTTTCTTCTATTATATATGTCCCTTTAAATGGTTAAGCTTCTTCTTTTTCCCCTCTTATTCTTGGGATAAGTTACATAATTTTATGTTATACTTTGTAAGAGATCTTTCTATTGGATTTGAATCACTGTACTTAATTACATCTCCAAAATTAACATTGCAGGTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTAAAGAAACAAGGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAAAGATGTGAGGTTGATTGGGGTTGAAGCAGCAGGTTTTGGTCTAGATAGTAGTAAACATGCCGCCACTTTGACAAAGGGTGAGGTAGGAGTACTGCATGGAGCTATGAGTTATCTACTGCAAGACGAAGATGGGCAGATTGTTGAGCCTCATTCTATCAGTGCCGGGTAATAACTTGAACCTTGCTTGTTACTAATGTGCTCATTTTGTGTGCTACTACAAAATCCTATGCATACACTTGACGCTACTGAAATAAAGTGTATTTGGTCAAATCAAATCATTGTATCTCTTAACTGGTTTTGTTCCCCCAATGGATTTATTAGATTGGATTACCCAGGAGTTGGG</genome_strand>
        <mrna_strand>TGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTAAAGAAACAAGGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAAAGATGTGAGGTTGATTGGGGTTGAAGCAGCAGGTTTTGGTCTAGATAGTAGTAAACATGCCGCCACTTTGACAAAGGGTGAGGTAGGAGTACTGCATGGAGCTATGAGTTATCTACTGCAAGACGAAGATGGGCAGATTGTTGAGCCTCATTCTATCAGTGCCGG............................................................................................................................................................ATTGGA-TACCCAGGAGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538016" ref_strand="+" ref_description="SGN-E538016 [TUS-56-O16]">
      <seq>ctgaagagagaagatttaaaccacacgggtgcccacaaaatcaataatgctgttgcgcaagctttgcttgccaagcgcttgggaaagaaacgcattattgccgagacaggggctggtcagcatggtgttgccactgcaactgtttgtgctcggtttggtttggactgtgttatttatatgggtgctcaagatatggagaggcaagcattgaatgtcttcagaatgcgactgcttggagctgaggttagagcagtccactctggaactgctactctcaaggatgctacttcagaagctataagggattgggttacaaatgttgaaacaactcactacatacttggatctgttgcaggaccacacccttaccccatgatggttagggagttccatgcagtgattggtaaagaaacaaggaagcaatcattggaaaagtggggcgggaaaccagacgtgcttgttgcatgtgttggtggaggttcaaatgctatgggactctttcatgagtttgttgatgacaaagatgtgaggttgattggggttgaagcagcaggttttggtctagatagtagtaaacatgccgccactttgacaaagggtgaggtaggagtactgcatggagctatgagttatctactgcaagacgaagatgggcagatttgtgagcctcattctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="25111" stop="23074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24811" g_stop="24569" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24568" i_stop="23809" i_length="760">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23808" g_stop="23374" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="678" r_length="435" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E538016" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24811" e_stop="24569"/>
          <exon e_start="23808" e_stop="23374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAGGTCTGTATGATACAGTATAAATTGACCACTCTGATCATAGCTTACTTGAGGAGAGATTGAAAATTAATTAAATATCCACTGATTAACTTTATGGTTTCACTAAGATTTCTGCACCTTCTAATAATTGACTGGGTTATCTGCAATAACATCAACTTGTTCAGTAAAATCCTGTGGTTTCTTCTTCCCTACGTTCCACAGATGAATTTCGCTGTAAATGTACTGTGTTTTTCGCATATTCATAAATTCTCAATTGCAGGAATGATTAGTAAGTGTGGTCCATAGGTACAGGAACAAAAGGTTGAGTGCAAAATATTGGTTAATGGGGAGAACAGAATGTGATATGAATAATGATATCCATGAACTTAGGGAGTAGGATAAGATGTATACAGACGGGGAGGGGCAATCTTATTAAAATCCATGAATCAGTCAAATATTTGCAAAGTGAGAAGTTGCCGGGAAATTTTCTTGTTTTGCATTACCTACACTGCCTCTATATTCTTTTTTTTTTTTTTGAAAATATTACCTTGCCTCTATTTTGATCTGAAGACCATTTAGAATTCTATTTAGGGCTTGAGGACCGTGGTTTGCTGAACCATCGCCTTTCTTCTATTATATATGTCCCTTTAAATGGTTAAGCTTCTTCTTTTTCCCCTCTTATTCTTGGGATAAGTTACATAATTTTATGTTATACTTTGTAAGAGATCTTTCTATTGGATTTGAATCACTGTACTTAATTACATCTCCAAAATTAACATTGCAGGTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTAAAGAAACAAGGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAAAGATGTGAGGTTGATTGGGGTTGAAGCAGCAGGTTTTGGTCTAGATAGTAGTAAACATGCCGCCACTTTGACAAAGGGTGAGGTAGGAGTACTGCATGGAGCTATGAGTTATCTACTGCAAGACGAAGATGGGCAGATTGTTGAGCCTCATTCTATC</genome_strand>
        <mrna_strand>CTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTAAAGAAACAAGGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAAAGATGTGAGGTTGATTGGGGTTGAAGCAGCAGGTTTTGGTCTAGATAGTAGTAAACATGCCGCCACTTTGACAAAGGGTGAGGTAGGAGTACTGCATGGAGCTATGAGTTATCTACTGCAAGACGAAGATGGGCAGATTTGTGAGCCTCATTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268899" ref_strand="+" ref_description="SGN-E268899 [cLEM-4-L3]">
      <seq>taaacgtccagatggtgaaaggccaatgatctacctgaagagagaagatttaaaccacacgggtgcccacaaaatcaataatgctgttgcgcaagctttgcttgccaagcgcttgggaaagaaacgcattattgccgagacagagggctggtcagcatggtgttgccactgcaactgtttgtgctcggtttggtttggactgagttatttatatgggtgctcaagatatggagaggcaagcattgaatgtcttcagaatgcgactgcttggagctgaagttagagcagtccactctggaactgctactctcaaggatgctacttcagaagctataagggattgggttacaaatgttgaaacaactcactacatacttggatctgttgcaggaccacacccttaccccatgatggttagggagttccatgcagtgattggtgaagaaacaatgaagcaatcattggaaaagtggggcgggaaaccagacatgcttgttgcatgtgttggtggaggttcaaatgctatgggactctttcatgagtttgttgatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="25145" stop="23231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24845" g_stop="24569" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24568" i_stop="23809" i_length="760">
            <donor d_prob="0.756" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23808" g_stop="23531" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="556" r_length="278" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268899" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24845" e_stop="24569"/>
          <exon e_start="23808" e_stop="23531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAG-GGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAGGTCTGTATGATACAGTATAAATTGACCACTCTGATCATAGCTTACTTGAGGAGAGATTGAAAATTAATTAAATATCCACTGATTAACTTTATGGTTTCACTAAGATTTCTGCACCTTCTAATAATTGACTGGGTTATCTGCAATAACATCAACTTGTTCAGTAAAATCCTGTGGTTTCTTCTTCCCTACGTTCCACAGATGAATTTCGCTGTAAATGTACTGTGTTTTTCGCATATTCATAAATTCTCAATTGCAGGAATGATTAGTAAGTGTGGTCCATAGGTACAGGAACAAAAGGTTGAGTGCAAAATATTGGTTAATGGGGAGAACAGAATGTGATATGAATAATGATATCCATGAACTTAGGGAGTAGGATAAGATGTATACAGACGGGGAGGGGCAATCTTATTAAAATCCATGAATCAGTCAAATATTTGCAAAGTGAGAAGTTGCCGGGAAATTTTCTTGTTTTGCATTACCTACACTGCCTCTATATTCTTTTTTTTTTTTTTGAAAATATTACCTTGCCTCTATTTTGATCTGAAGACCATTTAGAATTCTATTTAGGGCTTGAGGACCGTGGTTTGCTGAACCATCGCCTTTCTTCTATTATATATGTCCCTTTAAATGGTTAAGCTTCTTCTTTTTCCCCTCTTATTCTTGGGATAAGTTACATAATTTTATGTTATACTTTGTAAGAGATCTTTCTATTGGATTTGAATCACTGTACTTAATTACATCTCCAAAATTAACATTGCAGGTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTAAAGAAACAAGGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAA</genome_strand>
        <mrna_strand>TAAACGTCCAGATGGTGAAAGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGAGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGAGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTGAAGAAACAATGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACATGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268414" ref_strand="+" ref_description="SGN-E268414 [cLEI-13-J17]">
      <seq>tgcccacaaaatcaataatgctgttgcgcaagctttgcttgccaagcgcttgggaaagaaacgcattattgccgagacaggggctggtcagcatggtgttgccactgcaactgtttgtgctcggtttggtttggactgtgttatttatatgggtgctcaagatatggagaggcaagcattgaatgtcttcagaatgcgactgcttggagctgaggttagagcagtccactctggaactgctactctcaaggatgctacttcagaagctataagggattgggttacaaatgttgaaacaactcactacatacttggatctgttgcaggaccacacccttaccccatgatggttagggagttccatgcagtgattggtaaagaaacaaggaagcaatcattggaaaagtggggcgggaaaccagacgtgcttgttgcatgtgttggtggaggttcaaatgctatgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="25082" stop="23256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24782" g_stop="24569" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24568" i_stop="23809" i_length="760">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23808" g_stop="23556" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="467" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24782" e_stop="24569"/>
          <exon e_start="23808" e_stop="23556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAGGTCTGTATGATACAGTATAAATTGACCACTCTGATCATAGCTTACTTGAGGAGAGATTGAAAATTAATTAAATATCCACTGATTAACTTTATGGTTTCACTAAGATTTCTGCACCTTCTAATAATTGACTGGGTTATCTGCAATAACATCAACTTGTTCAGTAAAATCCTGTGGTTTCTTCTTCCCTACGTTCCACAGATGAATTTCGCTGTAAATGTACTGTGTTTTTCGCATATTCATAAATTCTCAATTGCAGGAATGATTAGTAAGTGTGGTCCATAGGTACAGGAACAAAAGGTTGAGTGCAAAATATTGGTTAATGGGGAGAACAGAATGTGATATGAATAATGATATCCATGAACTTAGGGAGTAGGATAAGATGTATACAGACGGGGAGGGGCAATCTTATTAAAATCCATGAATCAGTCAAATATTTGCAAAGTGAGAAGTTGCCGGGAAATTTTCTTGTTTTGCATTACCTACACTGCCTCTATATTCTTTTTTTTTTTTTTGAAAATATTACCTTGCCTCTATTTTGATCTGAAGACCATTTAGAATTCTATTTAGGGCTTGAGGACCGTGGTTTGCTGAACCATCGCCTTTCTTCTATTATATATGTCCCTTTAAATGGTTAAGCTTCTTCTTTTTCCCCTCTTATTCTTGGGATAAGTTACATAATTTTATGTTATACTTTGTAAGAGATCTTTCTATTGGATTTGAATCACTGTACTTAATTACATCTCCAAAATTAACATTGCAGGTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTAAAGAAACAAGGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGAC</genome_strand>
        <mrna_strand>TGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTAAAGAAACAAGGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717400" ref_strand="+" ref_description="SGN-E717400 [FC01AE01]">
      <seq>gggcgattggcggccaatcggccgaattgagatttgcttaattttcacaaatcatccaaacatggccttctcctcaccgagcaaaatagctccaccgctaccgaagcctcaccgtttctcctccttatctcaatcgcaaatacccttcaaattcatcaaaattacgtcattacccactaaaccacctgccatagcttgtgtcctcaccggaaaatcaatggatgccaccgccgttcaacgacccgattcgtttggtcggtttggaaagttcggcggtaagtatgtaccggaaactctaatgcacgctcttgatgagctggaaaccgccttcaattcgctcgctacagaccaggactttcagaaggaactagatgggatattaagagattatgttggcagagagagccctctttattttgctgagcgacttactgagcattataaacgtccagatggtgaagggccaatgatctacctgaagagagaagatttaaaccacacgggtgcccacaaaatcaataatgctgttgcgcaagctttgcttgccaagcgcttgggaaagaaacgcattattgccgagacaggggctggtcagcatggtgttgccactgcaactgtttgtgctcggtttggtttggactgtgttatttatatgggtgctcaagatatggagaggcaagcattgaatgtcttcagaatgcgactgcttggagctgaggttagagcagtccactctggaactgctactctcaaggatgctacttcagaagctataagggattgggttacaaatgttgaaacaactcactacatacttggatctgttgcaggaccacacccttaccccatgatggttagggagttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="26566" stop="23360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26258" g_stop="25929" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="361" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25928" i_stop="24926" i_length="1003">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24925" g_stop="24569" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="718" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24568" i_stop="23809" i_length="760">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23808" g_stop="23660" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="867" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E717400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26258" e_stop="25929"/>
          <exon e_start="24925" e_stop="24569"/>
          <exon e_start="23808" e_stop="23660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCTTAATTTTCACAAATCATCCAAACATGGCCTTCTCCTCACCGAGCAAAATAGCTCCACCGCTACCGAAGCCTCACCGTTTCTCCTCCTTATCTCAATCGCAAATACCCTTCAAATTCATCAAAATTACGTCATTACCCACTAAACCACCTGCCATAGCTTGTGTCCTCACCGGAAAATCAATGGATGCCACCGCCGTTCAACGACCCGATTCGTTTGGTCGGTTTGGAAAGTTCGGCGGTAAGTATGTACCGGAAACTCTAATGCACGCTCTTGATGAGCTGGAAACCGCCTTCAATTCGCTCGCTACAGACCAGGACTTTCAGGTGTTTGATTTACTGCATTCTCCGATTGGTGATTTTGTTTCATTTCAATTATTTGAATAAAATGGATATATGAATTGTGAAGGATATATATATATATATATAGTTTAGCTAAACTACATTGGAGGAACTAGCACGTATATTAAGAAGATTTCTTTGATATTTCATTGTGAAAGCATTTATTATTGTATATCAACTTAAAATTGTTATCGAAACTCGTAAACTTCAAATCCAGAATCCATTTTTGCTAACTTTAGGATTTGAGATTAGTTGATATTGGTGTTTTTTGACGTGCATTCAGCATTCTGTAATAAGAGCGGATCTGATTGATCGGACATTACTGCAGGCTTTACTTTTAGCCTTCGAAATATGTAGAGTGAAATTAATAAAAAAAAAAACTTCTTTTGTTATTCAATCATGAAATGATGAAACTAGTTGACTAGTATCTTATGATATTCGTAGTCTGTGTTTGTTAACAAGCTGAAATAACTGAGTAGGTTAGCTTAAACTGCAAATTCTCTGTGTGCGCGTGCGTGTTTTAAGTAAATGATAGTATCTTCTTTGAGCATAATTTCTTTGGAAACTGCAGGAGCTATAATTTTGTTGGAAATTTAGCTCAATTCAAGTTTTTTTTCCAATATAAAGAGCTGTAGTTATGACTTATGAGCTTTATGCTCGTAATACCCTGCTTGGTCTCTGATTTTTGGTATATCACGTGTAAATATTGCTGTCCGCAACATCAATAAAATTATGTTATCTTATCAAAAATAAATTCTCTTAACAAACTCCTAATCTTAATAATACGAGAAATTATGTTGTCTTTTGAATGAAATGGACTTGAATAGATAGAAAGGGATATAGATGATTCAGAAGCTGGATTGCAAAACTGTTATGGAATTGAGGCATCACTGATGGATTGATTAATTTCAATTGTATGGCATTGTGAAGAATTGTTGACCGCTATAAAACTTTTAACTCTTTTGTACACCATTTATGCTGACTGCAGAAGGAACTAGATGGGATATTAAGAGATTATGTTGGCAGAGAGAGCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAGGTCTGTATGATACAGTATAAATTGACCACTCTGATCATAGCTTACTTGAGGAGAGATTGAAAATTAATTAAATATCCACTGATTAACTTTATGGTTTCACTAAGATTTCTGCACCTTCTAATAATTGACTGGGTTATCTGCAATAACATCAACTTGTTCAGTAAAATCCTGTGGTTTCTTCTTCCCTACGTTCCACAGATGAATTTCGCTGTAAATGTACTGTGTTTTTCGCATATTCATAAATTCTCAATTGCAGGAATGATTAGTAAGTGTGGTCCATAGGTACAGGAACAAAAGGTTGAGTGCAAAATATTGGTTAATGGGGAGAACAGAATGTGATATGAATAATGATATCCATGAACTTAGGGAGTAGGATAAGATGTATACAGACGGGGAGGGGCAATCTTATTAAAATCCATGAATCAGTCAAATATTTGCAAAGTGAGAAGTTGCCGGGAAATTTTCTTGTTTTGCATTACCTACACTGCCTCTATATTCTTTTTTTTTTTTTTGAAAATATTACCTTGCCTCTATTTTGATCTGAAGACCATTTAGAATTCTATTTAGGGCTTGAGGACCGTGGTTTGCTGAACCATCGCCTTTCTTCTATTATATATGTCCCTTTAAATGGTTAAGCTTCTTCTTTTTCCCCTCTTATTCTTGGGATAAGTTACATAATTTTATGTTATACTTTGTAAGAGATCTTTCTATTGGATTTGAATCACTGTACTTAATTACATCTCCAAAATTAACATTGCAGGTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCA</genome_strand>
        <mrna_strand>ATTTGCTTAATTTTCACAAATCATCCAAACATGGCCTTCTCCTCACCGAGCAAAATAGCTCCACCGCTACCGAAGCCTCACCGTTTCTCCTCCTTATCTCAATCGCAAATACCCTTCAAATTCATCAAAATTACGTCATTACCCACTAAACCACCTGCCATAGCTTGTGTCCTCACCGGAAAATCAATGGATGCCACCGCCGTTCAACGACCCGATTCGTTTGGTCGGTTTGGAAAGTTCGGCGGTAAGTATGTACCGGAAACTCTAATGCACGCTCTTGATGAGCTGGAAACCGCCTTCAATTCGCTCGCTACAGACCAGGACTTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAACTAGATGGGATATTAAGAGATTATGTTGGCAGAGAGAGCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479426" ref_strand="+" ref_description="SGN-E479426 [cSTD-9-H18]">
      <seq>tcgctaccgaagcctcaccgtttctcctccttatctcaatcgcaaataccccttcaaattcatcaaaattaccgtcttcacccaccaatccaccagccatagcttgtgtcctcacccggaaatcaatggatgccgccgccattcaacgacccgattcgtttggccggtttggaaagttcggtggtaagtatgtaccggaaacctctaatgcatgctctcgatgagctggaaactgccttcaattcgctcgctacagaccaggactttcagaaggaactagatgggatattaagagattatgttggcagagagagccctctttattttgctgagcgacttactgagcattataaacgtccagatggtgaagggccaatgatctacctgaagagagaagatttaaaccacactggtgcccacaaaatcaataatgccgttgcgcaagctttgcttgccaagcgcttgggaaagaaacgcattattgccgagacaggggctggtcagcatggtgttgccactgcaactgtttgtgctcggttttggtttggactgtgttatttatatgggtgctcaagatatggagaggcaagcattgaatgtcttcagaatgcgactgcttggacctgaggttagagcagtccactctggaactgctacgctcaaggatgctacttcagaagctataagggattgggttacaaatgttgaaacaactcactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="26494" stop="23416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26195" g_stop="25929" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25928" i_stop="24926" i_length="1003">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24925" g_stop="24569" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="628" r_length="358" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24568" i_stop="23809" i_length="760">
            <donor d_prob="0.756" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23808" g_stop="23716" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="721" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E479426" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26195" e_stop="25929"/>
          <exon e_start="24925" e_stop="24569"/>
          <exon e_start="23808" e_stop="23716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTACCGAAGCCTCACCGTTTCTCCTCCTTATCTCAATCGCAAATA-CCCTTCAAATTCATCAAAATTA-CGTCATTACCCACTAAACCACCTGCCATAGCTTGTGTCCTCACCGGAAAATCAATGGATGCCACCGCCGTTCAACGACCCGATTCGTTTGGTCGGTTTGGAAAGTTCGGCGGTAAGTATGTACCGGAAA-CTCTAATGCACGCTCTTGATGAGCTGGAAACCGCCTTCAATTCGCTCGCTACAGACCAGGACTTTCAGGTGTTTGATTTACTGCATTCTCCGATTGGTGATTTTGTTTCATTTCAATTATTTGAATAAAATGGATATATGAATTGTGAAGGATATATATATATATATATAGTTTAGCTAAACTACATTGGAGGAACTAGCACGTATATTAAGAAGATTTCTTTGATATTTCATTGTGAAAGCATTTATTATTGTATATCAACTTAAAATTGTTATCGAAACTCGTAAACTTCAAATCCAGAATCCATTTTTGCTAACTTTAGGATTTGAGATTAGTTGATATTGGTGTTTTTTGACGTGCATTCAGCATTCTGTAATAAGAGCGGATCTGATTGATCGGACATTACTGCAGGCTTTACTTTTAGCCTTCGAAATATGTAGAGTGAAATTAATAAAAAAAAAAACTTCTTTTGTTATTCAATCATGAAATGATGAAACTAGTTGACTAGTATCTTATGATATTCGTAGTCTGTGTTTGTTAACAAGCTGAAATAACTGAGTAGGTTAGCTTAAACTGCAAATTCTCTGTGTGCGCGTGCGTGTTTTAAGTAAATGATAGTATCTTCTTTGAGCATAATTTCTTTGGAAACTGCAGGAGCTATAATTTTGTTGGAAATTTAGCTCAATTCAAGTTTTTTTTCCAATATAAAGAGCTGTAGTTATGACTTATGAGCTTTATGCTCGTAATACCCTGCTTGGTCTCTGATTTTTGGTATATCACGTGTAAATATTGCTGTCCGCAACATCAATAAAATTATGTTATCTTATCAAAAATAAATTCTCTTAACAAACTCCTAATCTTAATAATACGAGAAATTATGTTGTCTTTTGAATGAAATGGACTTGAATAGATAGAAAGGGATATAGATGATTCAGAAGCTGGATTGCAAAACTGTTATGGAATTGAGGCATCACTGATGGATTGATTAATTTCAATTGTATGGCATTGTGAAGAATTGTTGACCGCTATAAAACTTTTAACTCTTTTGTACACCATTTATGCTGACTGCAGAAGGAACTAGATGGGATATTAAGAGATTATGTTGGCAGAGAGAGCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGG-TTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAGGTCTGTATGATACAGTATAAATTGACCACTCTGATCATAGCTTACTTGAGGAGAGATTGAAAATTAATTAAATATCCACTGATTAACTTTATGGTTTCACTAAGATTTCTGCACCTTCTAATAATTGACTGGGTTATCTGCAATAACATCAACTTGTTCAGTAAAATCCTGTGGTTTCTTCTTCCCTACGTTCCACAGATGAATTTCGCTGTAAATGTACTGTGTTTTTCGCATATTCATAAATTCTCAATTGCAGGAATGATTAGTAAGTGTGGTCCATAGGTACAGGAACAAAAGGTTGAGTGCAAAATATTGGTTAATGGGGAGAACAGAATGTGATATGAATAATGATATCCATGAACTTAGGGAGTAGGATAAGATGTATACAGACGGGGAGGGGCAATCTTATTAAAATCCATGAATCAGTCAAATATTTGCAAAGTGAGAAGTTGCCGGGAAATTTTCTTGTTTTGCATTACCTACACTGCCTCTATATTCTTTTTTTTTTTTTTGAAAATATTACCTTGCCTCTATTTTGATCTGAAGACCATTTAGAATTCTATTTAGGGCTTGAGGACCGTGGTTTGCTGAACCATCGCCTTTCTTCTATTATATATGTCCCTTTAAATGGTTAAGCTTCTTCTTTTTCCCCTCTTATTCTTGGGATAAGTTACATAATTTTATGTTATACTTTGTAAGAGATCTTTCTATTGGATTTGAATCACTGTACTTAATTACATCTCCAAAATTAACATTGCAGGTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTAC</genome_strand>
        <mrna_strand>TCGCTACCGAAGCCTCACCGTTTCTCCTCCTTATCTCAATCGCAAATACCCCTTCAAATTCATCAAAATTACCGTCTTCACCCACCAATCCACCAGCCATAGCTTGTGTCCTCACCCGGAAATCAATGGATGCCGCCGCCATTCAACGACCCGATTCGTTTGGCCGGTTTGGAAAGTTCGGTGGTAAGTATGTACCGGAAACCTCTAATGCATGCTCTCGATGAGCTGGAAACTGCCTTCAATTCGCTCGCTACAGACCAGGACTTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAACTAGATGGGATATTAAGAGATTATGTTGGCAGAGAGAGCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACTGGTGCCCACAAAATCAATAATGCCGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGACCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAGCAGTCCACTCTGGAACTGCTACGCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211695" ref_strand="+" ref_description="SGN-E211695 [cLEC-67-P6]">
      <seq>cggaaactctaatgcacgctcttgatgagctggaaaccgccttcaattcgctcgctacagaccaggactttcagaaggaactagatgggatattaagagattatgttggcagagagagccctctttattttgctgagcgacttactgagcattataaacgtccagatggtgaagggccaatgatctacctgaagagagaagatttaaaccacacgggtgcccacaaaatcaataatgctgttgcgcaagctttgcttgccaagcgcttgggaaagaaacgcattattgccgagacaggggctggtcagcatggtgttgccactgcaactgtttgtgctcggtttggtttggactgtgttatttatatgggtgctcaagatatggagaggcaagcattgaatgtcttcagaatgcgactgcttggagctgaggttagagcagtccactctggaactgctactctcaaggatgctacttcagaagctataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="26302" stop="23451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26002" g_stop="25929" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25928" i_stop="24926" i_length="1003">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24925" g_stop="24569" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="431" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24568" i_stop="23809" i_length="760">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23808" g_stop="23751" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="489" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E211695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26002" e_stop="25929"/>
          <exon e_start="24925" e_stop="24569"/>
          <exon e_start="23808" e_stop="23751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACTCTAATGCACGCTCTTGATGAGCTGGAAACCGCCTTCAATTCGCTCGCTACAGACCAGGACTTTCAGGTGTTTGATTTACTGCATTCTCCGATTGGTGATTTTGTTTCATTTCAATTATTTGAATAAAATGGATATATGAATTGTGAAGGATATATATATATATATATAGTTTAGCTAAACTACATTGGAGGAACTAGCACGTATATTAAGAAGATTTCTTTGATATTTCATTGTGAAAGCATTTATTATTGTATATCAACTTAAAATTGTTATCGAAACTCGTAAACTTCAAATCCAGAATCCATTTTTGCTAACTTTAGGATTTGAGATTAGTTGATATTGGTGTTTTTTGACGTGCATTCAGCATTCTGTAATAAGAGCGGATCTGATTGATCGGACATTACTGCAGGCTTTACTTTTAGCCTTCGAAATATGTAGAGTGAAATTAATAAAAAAAAAAACTTCTTTTGTTATTCAATCATGAAATGATGAAACTAGTTGACTAGTATCTTATGATATTCGTAGTCTGTGTTTGTTAACAAGCTGAAATAACTGAGTAGGTTAGCTTAAACTGCAAATTCTCTGTGTGCGCGTGCGTGTTTTAAGTAAATGATAGTATCTTCTTTGAGCATAATTTCTTTGGAAACTGCAGGAGCTATAATTTTGTTGGAAATTTAGCTCAATTCAAGTTTTTTTTCCAATATAAAGAGCTGTAGTTATGACTTATGAGCTTTATGCTCGTAATACCCTGCTTGGTCTCTGATTTTTGGTATATCACGTGTAAATATTGCTGTCCGCAACATCAATAAAATTATGTTATCTTATCAAAAATAAATTCTCTTAACAAACTCCTAATCTTAATAATACGAGAAATTATGTTGTCTTTTGAATGAAATGGACTTGAATAGATAGAAAGGGATATAGATGATTCAGAAGCTGGATTGCAAAACTGTTATGGAATTGAGGCATCACTGATGGATTGATTAATTTCAATTGTATGGCATTGTGAAGAATTGTTGACCGCTATAAAACTTTTAACTCTTTTGTACACCATTTATGCTGACTGCAGAAGGAACTAGATGGGATATTAAGAGATTATGTTGGCAGAGAGAGCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAGGTCTGTATGATACAGTATAAATTGACCACTCTGATCATAGCTTACTTGAGGAGAGATTGAAAATTAATTAAATATCCACTGATTAACTTTATGGTTTCACTAAGATTTCTGCACCTTCTAATAATTGACTGGGTTATCTGCAATAACATCAACTTGTTCAGTAAAATCCTGTGGTTTCTTCTTCCCTACGTTCCACAGATGAATTTCGCTGTAAATGTACTGTGTTTTTCGCATATTCATAAATTCTCAATTGCAGGAATGATTAGTAAGTGTGGTCCATAGGTACAGGAACAAAAGGTTGAGTGCAAAATATTGGTTAATGGGGAGAACAGAATGTGATATGAATAATGATATCCATGAACTTAGGGAGTAGGATAAGATGTATACAGACGGGGAGGGGCAATCTTATTAAAATCCATGAATCAGTCAAATATTTGCAAAGTGAGAAGTTGCCGGGAAATTTTCTTGTTTTGCATTACCTACACTGCCTCTATATTCTTTTTTTTTTTTTTGAAAATATTACCTTGCCTCTATTTTGATCTGAAGACCATTTAGAATTCTATTTAGGGCTTGAGGACCGTGGTTTGCTGAACCATCGCCTTTCTTCTATTATATATGTCCCTTTAAATGGTTAAGCTTCTTCTTTTTCCCCTCTTATTCTTGGGATAAGTTACATAATTTTATGTTATACTTTGTAAGAGATCTTTCTATTGGATTTGAATCACTGTACTTAATTACATCTCCAAAATTAACATTGCAGGTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAA</genome_strand>
        <mrna_strand>CGGAAACTCTAATGCACGCTCTTGATGAGCTGGAAACCGCCTTCAATTCGCTCGCTACAGACCAGGACTTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAACTAGATGGGATATTAAGAGATTATGTTGGCAGAGAGAGCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267703" ref_strand="+" ref_description="SGN-E267703 [cLEI-12-I8]">
      <seq>aagagagaagatttaaaccacacgggtgcccgcaatatcaataatgctgtcgcgcaagctttgcttgccaagcgctcgggaaagaaacgcattattgccgaaacaggggctggtcaacatggtgttgtcactgtaactggttgagctcggattggttgggactgtgacatttatatgggtgctcaagatatggataggcaatcattgaatgtcttcagaatgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="25108" stop="24284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24808" g_stop="24584" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E267703" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24808" e_stop="24584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGA</genome_strand>
        <mrna_strand>AAGAGAGAAGATTTAAACCACACGGGTGCCCGCAATATCAATAATGCTGTCGCGCAAGCTTTGCTTGCCAAGCGCTCGGGAAAGAAACGCATTATTGCCGAAACAGGGGCTGGTCAACATGGTGTTGTCACTGTAACTGGTTGAGCTCGGATTGGTTGGGACTGTGACATTTATATGGGTGCTCAAGATATGGATAGGCAATCATTGAATGTCTTCAGAATGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468604" ref_strand="+" ref_description="SGN-E468604 [cSTB-5-G10]">
      <seq>cgaagcctcaccgtttctcctccttatctcaatcgcaaatacccttcaaattcatcaaaattacgtcttcacccaccaatccaccagccatagcttgtgtcctcaccggaaaatcaatggatgccgccgccattcaacgacccgattcgtttggccggtttggaaagttcggtggtaagtatgtaccggaaactctaatgcatgctctcgatgagctggaaactgccttcaattcgctcgctacagaccaggactttcagaaggaactagatggcatattaagagattatgttggcagagagagccctctttattttgctgagcgacttactgagcattataaacgtccagatggtgaagggccaatgatctacctgaagagagaagatttaaaccacactggtgcccacaaaatcaataatgccgttgcgcaagctttgcttgccaagcgcttgggaaagatacgcattattgccgagacaggggccggtcagcatggtgttgccactgcaactgtttgtgctcggtttggtttggactgtgttatttatatgggtgctcaagatatggagaggcaagcattgaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="26488" stop="24296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26188" g_stop="25929" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25928" i_stop="24926" i_length="1003">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24925" g_stop="24596" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="590" r_length="330" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E468604" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26188" e_stop="25929"/>
          <exon e_start="24925" e_stop="24596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCCTCACCGTTTCTCCTCCTTATCTCAATCGCAAATACCCTTCAAATTCATCAAAATTACGTCATTACCCACTAAACCACCTGCCATAGCTTGTGTCCTCACCGGAAAATCAATGGATGCCACCGCCGTTCAACGACCCGATTCGTTTGGTCGGTTTGGAAAGTTCGGCGGTAAGTATGTACCGGAAACTCTAATGCACGCTCTTGATGAGCTGGAAACCGCCTTCAATTCGCTCGCTACAGACCAGGACTTTCAGGTGTTTGATTTACTGCATTCTCCGATTGGTGATTTTGTTTCATTTCAATTATTTGAATAAAATGGATATATGAATTGTGAAGGATATATATATATATATATAGTTTAGCTAAACTACATTGGAGGAACTAGCACGTATATTAAGAAGATTTCTTTGATATTTCATTGTGAAAGCATTTATTATTGTATATCAACTTAAAATTGTTATCGAAACTCGTAAACTTCAAATCCAGAATCCATTTTTGCTAACTTTAGGATTTGAGATTAGTTGATATTGGTGTTTTTTGACGTGCATTCAGCATTCTGTAATAAGAGCGGATCTGATTGATCGGACATTACTGCAGGCTTTACTTTTAGCCTTCGAAATATGTAGAGTGAAATTAATAAAAAAAAAAACTTCTTTTGTTATTCAATCATGAAATGATGAAACTAGTTGACTAGTATCTTATGATATTCGTAGTCTGTGTTTGTTAACAAGCTGAAATAACTGAGTAGGTTAGCTTAAACTGCAAATTCTCTGTGTGCGCGTGCGTGTTTTAAGTAAATGATAGTATCTTCTTTGAGCATAATTTCTTTGGAAACTGCAGGAGCTATAATTTTGTTGGAAATTTAGCTCAATTCAAGTTTTTTTTCCAATATAAAGAGCTGTAGTTATGACTTATGAGCTTTATGCTCGTAATACCCTGCTTGGTCTCTGATTTTTGGTATATCACGTGTAAATATTGCTGTCCGCAACATCAATAAAATTATGTTATCTTATCAAAAATAAATTCTCTTAACAAACTCCTAATCTTAATAATACGAGAAATTATGTTGTCTTTTGAATGAAATGGACTTGAATAGATAGAAAGGGATATAGATGATTCAGAAGCTGGATTGCAAAACTGTTATGGAATTGAGGCATCACTGATGGATTGATTAATTTCAATTGTATGGCATTGTGAAGAATTGTTGACCGCTATAAAACTTTTAACTCTTTTGTACACCATTTATGCTGACTGCAGAAGGAACTAGATGGGATATTAAGAGATTATGTTGGCAGAGAGAGCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTC</genome_strand>
        <mrna_strand>CGAAGCCTCACCGTTTCTCCTCCTTATCTCAATCGCAAATACCCTTCAAATTCATCAAAATTACGTCTTCACCCACCAATCCACCAGCCATAGCTTGTGTCCTCACCGGAAAATCAATGGATGCCGCCGCCATTCAACGACCCGATTCGTTTGGCCGGTTTGGAAAGTTCGGTGGTAAGTATGTACCGGAAACTCTAATGCATGCTCTCGATGAGCTGGAAACTGCCTTCAATTCGCTCGCTACAGACCAGGACTTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAACTAGATGGCATATTAAGAGATTATGTTGGCAGAGAGAGCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACTGGTGCCCACAAAATCAATAATGCCGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGATACGCATTATTGCCGAGACAGGGGCCGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472067" ref_strand="+" ref_description="SGN-E472067 [cSTB-27-G24]">
      <seq>ttcacccaccaatccaccagccatagcttgtgtcctcaccggaaaatcaatggatgccgtcgccattcaacgacccgattcgtttggccggtttggaaagttcggtggtaagtatgtaccggaaactctaatgcatgctatcgatgagctggaaactgccttcaattcgctcgctacagaccaggacttttagaaggaactagatggcatattaaaagattttgttggcagagagagccctctttattttgctgagcgacttactgagcattataaacgtccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="26420" stop="24535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26121" g_stop="25929" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25928" i_stop="24926" i_length="1003">
            <donor d_prob="0.953" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24925" g_stop="24835" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="284" r_length="91" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E472067" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26121" e_stop="25929"/>
          <exon e_start="24925" e_stop="24835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCCACTAAACCACCTGCCATAGCTTGTGTCCTCACCGGAAAATCAATGGATGCCACCGCCGTTCAACGACCCGATTCGTTTGGTCGGTTTGGAAAGTTCGGCGGTAAGTATGTACCGGAAACTCTAATGCACGCTCTTGATGAGCTGGAAACCGCCTTCAATTCGCTCGCTACAGACCAGGACTTTCAGGTGTTTGATTTACTGCATTCTCCGATTGGTGATTTTGTTTCATTTCAATTATTTGAATAAAATGGATATATGAATTGTGAAGGATATATATATATATATATAGTTTAGCTAAACTACATTGGAGGAACTAGCACGTATATTAAGAAGATTTCTTTGATATTTCATTGTGAAAGCATTTATTATTGTATATCAACTTAAAATTGTTATCGAAACTCGTAAACTTCAAATCCAGAATCCATTTTTGCTAACTTTAGGATTTGAGATTAGTTGATATTGGTGTTTTTTGACGTGCATTCAGCATTCTGTAATAAGAGCGGATCTGATTGATCGGACATTACTGCAGGCTTTACTTTTAGCCTTCGAAATATGTAGAGTGAAATTAATAAAAAAAAAAACTTCTTTTGTTATTCAATCATGAAATGATGAAACTAGTTGACTAGTATCTTATGATATTCGTAGTCTGTGTTTGTTAACAAGCTGAAATAACTGAGTAGGTTAGCTTAAACTGCAAATTCTCTGTGTGCGCGTGCGTGTTTTAAGTAAATGATAGTATCTTCTTTGAGCATAATTTCTTTGGAAACTGCAGGAGCTATAATTTTGTTGGAAATTTAGCTCAATTCAAGTTTTTTTTCCAATATAAAGAGCTGTAGTTATGACTTATGAGCTTTATGCTCGTAATACCCTGCTTGGTCTCTGATTTTTGGTATATCACGTGTAAATATTGCTGTCCGCAACATCAATAAAATTATGTTATCTTATCAAAAATAAATTCTCTTAACAAACTCCTAATCTTAATAATACGAGAAATTATGTTGTCTTTTGAATGAAATGGACTTGAATAGATAGAAAGGGATATAGATGATTCAGAAGCTGGATTGCAAAACTGTTATGGAATTGAGGCATCACTGATGGATTGATTAATTTCAATTGTATGGCATTGTGAAGAATTGTTGACCGCTATAAAACTTTTAACTCTTTTGTACACCATTTATGCTGACTGCAGAAGGAACTAGATGGGATATTAAGAGATTATGTTGGCAGAGAGAGCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAG</genome_strand>
        <mrna_strand>TTCACCCACCAATCCACCAGCCATAGCTTGTGTCCTCACCGGAAAATCAATGGATGCCGTCGCCATTCAACGACCCGATTCGTTTGGCCGGTTTGGAAAGTTCGGTGGTAAGTATGTACCGGAAACTCTAATGCATGCTATCGATGAGCTGGAAACTGCCTTCAATTCGCTCGCTACAGACCAGGACTTTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAACTAGATGGCATATTAAAAGATTTTGTTGGCAGAGAGAGCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439422" ref_strand="+" ref_description="SGN-E439422 [cSTA-12-G19]">
      <seq>caaatagctccactgctaccgaagcctcaccgtttctcctccttatctcaatcgcaaatacccttcaaattcatcaaaattaccgtcttcacccaccaaaccaccagccatagcttgtgtcctcaccggaaaatcaatggatgccgcccccgttcaacgtcccgattcgtttggccggtttggaaagttcggtggtaagtatgtaccggaaactctaatgcatgctctcgatgagctcgaaaccgccttcaattcgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="26506" stop="25649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26207" g_stop="25949" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E439422" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26207" e_stop="25949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGCTCCACCGCTACCGAAGCCTCACCGTTTCTCCTCCTTATCTCAATCGCAAATACCCTTCAAATTCATCAAAATTA-CGTCATTACCCACTAAACCACCTGCCATAGCTTGTGTCCTCACCGGAAAATCAATGGATGCCACCGCCGTTCAACGACCCGATTCGTTTGGTCGGTTTGGAAAGTTCGGCGGTAAGTATGTACCGGAAACTCTAATGCACGCTCTTGATGAGCTGGAAACCGCCTTCAATTCGCTCG</genome_strand>
        <mrna_strand>CAAATAGCTCCACTGCTACCGAAGCCTCACCGTTTCTCCTCCTTATCTCAATCGCAAATACCCTTCAAATTCATCAAAATTACCGTCTTCACCCACCAAACCACCAGCCATAGCTTGTGTCCTCACCGGAAAATCAATGGATGCCGCCCCCGTTCAACGTCCCGATTCGTTTGGCCGGTTTGGAAAGTTCGGTGGTAAGTATGTACCGGAAACTCTAATGCATGCTCTCGATGAGCTCGAAACCGCCTTCAATTCGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336243" ref_strand="+" ref_description="SGN-E336243 [cTOE-10-P9]">
      <seq>ttcagatttagttactttaaagatcagtatttttggtgattgtcagattggtaaaacaagttttgtgattaagtatgtaggtgatgaacaagaaaagaggtgcttgcagacgaagggattgaacttaatggataaaacattagttgtacgaggtgcacgaattgcatttagaatatgggatgtaggaggtgatcatagctcatttgatcagattccaatagcttgtaaagattctgttgccattctctttatgttcgatctcactagccggagtacattgaacaatgtgataagttggtatactgaagcaagaaaatggaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="30927" stop="28760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30627" g_stop="30561" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30560" i_stop="29571" i_length="990">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29570" g_stop="29450" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="188" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29449" i_stop="29303" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29302" g_stop="29206" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="285" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29205" i_stop="29100" i_length="106">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29099" g_stop="29060" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="325" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E336243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30627" e_stop="30561"/>
          <exon e_start="29570" e_stop="29450"/>
          <exon e_start="29302" e_stop="29206"/>
          <exon e_start="29099" e_stop="29060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGATTTAGTTACTTTAAAGATCAGTATTTTTGGTGATTGTCAGATTGGTAAAACAAGTTTTGTGGTAAGTTTAACATAATTTTCTCTGTTTAGCTTAATATGTTGCTTTGTTACGTTTACGGAATTAAGATTTTGAATTTACGAATTCTGAATTATAGAAAAAATCCCTTGTGGGCTAAGCTCCAGCTCCGCCCCGGTGTGTGGGCCAATTTACGAACATATAGAGTAGATGATGAGCCTAGGTTGGTCCGGCCTTCGAAAAATATTGACATACCTATATTGGATCCTCCAAAAAGCATGTTTTTTTTAAGGATCTCGATAATATTTTTGAAAAATTCAAACAACAAAATGGTTTACTAAGATTTGGAGGACTTTCTTTTTTCTAGTGAAATTTGTGTTCTAATGTGTTTAGTATGAAGGAAAATGCTTTCTATGAAACAATATATTCTTGGAAAACGAGTGTATCTTTTATTTATTTTCTAGTGTTTAGCAAGTAAGAAAAAAAATATTATCCCTAGAGCAACTATATGTTATTTAGCAAAATATACAGGGTGGAAATGTGGTGGGGAGTGGGGATGGCAGGAATTTTGATGATCAGGGGGTAGGGTTGGGAGGTGGCGGGGTTTGGATGATCTAGGGGTGAGGTTGGGAGGTGGCACCCGGGATTTGGATGATCTAGGGGTGGGGTTGGGAGGTGGCATCTGGGGTTTGGATGATCTAGGGTGGGGTTGGGAGGTGGCGCCTGGGATTTGGATGATCTAGGGGTGGGGTTGAGAGGTGGCGGGGTTTGGATGATCAAGGGGTGGGATGGGGTGGGGTGTGGGGGAACACACAAGAAATTATTTTCCTCATTTTTAAGTAATTTGTTTAACCGAACATGGGAAAATTGAAAGTACTTTTCACCAGACCAAACACGCCGATTGGCCATTTTCCACTATTGATCACGAGTTCACACCCTTGATTGTCGAGTTAGAATGTTAAACTTCTTACGCTTAAACAAAGAAACAGTTTTTTTTCAACACCGTTGGTAACTTTTTAAATTTTTGTTTTCCAGATTAAGTATGTAGGTGATGAACAAGAAAAGAGGTGCTTGCAGACGAAGGGATTGAACTTAATGGATAAAACATTAGTTGTACGAGGTGCACGAATTGCATTTAGAATATGGGATGTAGGAGGTAAGTTCATTAATTTTCTTCCTAAATCTGGAAAGCTAATTATGTTTACTTGTTTAGGCCAAATTCGTCACTTTTAAGGTAGTTACTATAGCTTGATTAATGCAACGACTAATTCGGTTCTTGAATTTTTGAACTTTTGGTTTATAGGTGATCATAGCTCATTTGATCAGATTCCAATAGCTTGTAAAGATTCTGTTGCCATTCTCTTTATGTTCGATCTCACTAGCCGGAGTACATTGAACAAGTATGTAACTTGTCAAGAAAAGAAGATCTATTCGTATTTCTTATGTGCATAAAAGTTGAACTCCGTTATTAAAAGCTTTCGTTTTTGTTTTTTTTTGTAATTGCAGTGTGATAAGTTGGTATACTGAAGCAAGAAAATGGAATCAG</genome_strand>
        <mrna_strand>TTCAGATTTAGTTACTTTAAAGATCAGTATTTTTGGTGATTGTCAGATTGGTAAAACAAGTTTTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGTATGTAGGTGATGAACAAGAAAAGAGGTGCTTGCAGACGAAGGGATTGAACTTAATGGATAAAACATTAGTTGTACGAGGTGCACGAATTGCATTTAGAATATGGGATGTAGGAG...................................................................................................................................................GTGATCATAGCTCATTTGATCAGATTCCAATAGCTTGTAAAGATTCTGTTGCCATTCTCTTTATGTTCGATCTCACTAGCCGGAGTACATTGAACAA..........................................................................................................TGTGATAAGTTGGTATACTGAAGCAAGAAAATGGAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463831" ref_strand="+" ref_description="SGN-E463831 [cPRO-16-I15]">
      <seq>cacacacataccggtcaacaatttgtcatcgtcttcacaaagtcacaaataaatccaactagaaaaagactgtcaaaatgtggaacccagaatcagttcttatgtattttctacatcatggctcagaaaacccatgatttttcaccgggaaaaatgactaatatttgccggaaaatagttcaagtcaagattaggtggaagatatttgataaagcttcaatctttagggagttttttcgttttatttgggaaagaatcattgtttgttcaactggccggaaaccggtgaggtaccggcgtctgtctcgaagaagttcatcgtctccggtggctatggaggaagttgaagggtatggagtaggtggtggagaaggtgatcctttgactgcaacttgtagtggattaagtatgtaggtgatgaacaagaaaagaggtgcttgcagatgaagggattgaacttaatggataaaacattagttgtacgaggtgcacgaattgcatttagaatatgggatgtaggaggtgatcatagctcatttgatcagattccaattgcttgtaaagatgctgttgccattctctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="31350" stop="28939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31051" g_stop="30640" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30639" i_stop="29571" i_length="1069">
            <donor d_prob="0.066" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29570" g_stop="29450" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="522" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29449" i_stop="29303" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29302" g_stop="29239" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="586" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E463831" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31051" e_stop="30640"/>
          <exon e_start="29570" e_stop="29450"/>
          <exon e_start="29302" e_stop="29239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACATATACCGGTCAGCACTTTGTCGTCGTCTTCACAAAGTCACAAATTGTTCCAAACAGATAATTCCAACTACAAAAAGACTGTCAAAATGTGGAACCCAGAATCAGTTTTTATGTATTTTC--C-TCATGGCTCAGAAAACCCATGATTTTTCACCGGAAAAAATGACTAATCTTTGCCGGAAAATAGTTCAAGTCAAGATTAGGTGGAAGATATTTGATAAAGTTTCAATCTTTAGGGAGTTTTTTCGTTTTATTTGGGAAAGGATTATTGTTTGTTCAACTGGACGGAAACCGGTGAGGTACCGGCGTTTGTCTCGAAGAAGTTCATCGTCTCCGGTGGCTATGGAGGAAGTTGAAGGGTATGGGGTAGGTGGTGGGGAAGATGATCCTTTAACTGCAACTTGTAGTGGGTATGATAGTGATTCAGATTTAGTTACTTTAAAGATCAGTATTTTTGGTGATTGTCAGATTGGTAAAACAAGTTTTGTGGTAAGTTTAACATAATTTTCTCTGTTTAGCTTAATATGTTGCTTTGTTACGTTTACGGAATTAAGATTTTGAATTTACGAATTCTGAATTATAGAAAAAATCCCTTGTGGGCTAAGCTCCAGCTCCGCCCCGGTGTGTGGGCCAATTTACGAACATATAGAGTAGATGATGAGCCTAGGTTGGTCCGGCCTTCGAAAAATATTGACATACCTATATTGGATCCTCCAAAAAGCATGTTTTTTTTAAGGATCTCGATAATATTTTTGAAAAATTCAAACAACAAAATGGTTTACTAAGATTTGGAGGACTTTCTTTTTTCTAGTGAAATTTGTGTTCTAATGTGTTTAGTATGAAGGAAAATGCTTTCTATGAAACAATATATTCTTGGAAAACGAGTGTATCTTTTATTTATTTTCTAGTGTTTAGCAAGTAAGAAAAAAAATATTATCCCTAGAGCAACTATATGTTATTTAGCAAAATATACAGGGTGGAAATGTGGTGGGGAGTGGGGATGGCAGGAATTTTGATGATCAGGGGGTAGGGTTGGGAGGTGGCGGGGTTTGGATGATCTAGGGGTGAGGTTGGGAGGTGGCACCCGGGATTTGGATGATCTAGGGGTGGGGTTGGGAGGTGGCATCTGGGGTTTGGATGATCTAGGGTGGGGTTGGGAGGTGGCGCCTGGGATTTGGATGATCTAGGGGTGGGGTTGAGAGGTGGCGGGGTTTGGATGATCAAGGGGTGGGATGGGGTGGGGTGTGGGGGAACACACAAGAAATTATTTTCCTCATTTTTAAGTAATTTGTTTAACCGAACATGGGAAAATTGAAAGTACTTTTCACCAGACCAAACACGCCGATTGGCCATTTTCCACTATTGATCACGAGTTCACACCCTTGATTGTCGAGTTAGAATGTTAAACTTCTTACGCTTAAACAAAGAAACAGTTTTTTTTCAACACCGTTGGTAACTTTTTAAATTTTTGTTTTCCAGATTAAGTATGTAGGTGATGAACAAGAAAAGAGGTGCTTGCAGACGAAGGGATTGAACTTAATGGATAAAACATTAGTTGTACGAGGTGCACGAATTGCATTTAGAATATGGGATGTAGGAGGTAAGTTCATTAATTTTCTTCCTAAATCTGGAAAGCTAATTATGTTTACTTGTTTAGGCCAAATTCGTCACTTTTAAGGTAGTTACTATAGCTTGATTAATGCAACGACTAATTCGGTTCTTGAATTTTTGAACTTTTGGTTTATAGGTGATCATAGCTCATTTGATCAGATTCCAATAGCTTGTAAAGATTCTGTTGCCATTCTCTTTAT</genome_strand>
        <mrna_strand>CACACACATACCGGTCAACAATTTGTCATCGTCTTCACAAAGTCACAAA----T--------A-AA-TCCAACTAGAAAAAGACTGTCAAAATGTGGAACCCAGAATCAGTTCTTATGTATTTTCTACATCATGGCTCAGAAAACCCATGATTTTTCACCGGGAAAAATGACTAATATTTGCCGGAAAATAGTTCAAGTCAAGATTAGGTGGAAGATATTTGATAAAGCTTCAATCTTTAGGGAGTTTTTTCGTTTTATTTGGGAAAGAATCATTGTTTGTTCAACTGGCCGGAAACCGGTGAGGTACCGGCGTCTGTCTCGAAGAAGTTCATCGTCTCCGGTGGCTATGGAGGAAGTTGAAGGGTATGGAGTAGGTGGTGGAGAAGGTGATCCTTTGACTGCAACTTGTAGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGTATGTAGGTGATGAACAAGAAAAGAGGTGCTTGCAGATGAAGGGATTGAACTTAATGGATAAAACATTAGTTGTACGAGGTGCACGAATTGCATTTAGAATATGGGATGTAGGAG...................................................................................................................................................GTGATCATAGCTCATTTGATCAGATTCCAATTGCTTGTAAAGATGCTGTTGCCATTCTCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607293" ref_strand="+" ref_description="SGN-E607293 [23256]">
      <seq>tctgacggagacacaaacaaacaatccaggcgaagtaggaaacgaaagaaacaagctgagcataaagtatctacatcaaggtttaagatatattcagctaccctatcagggtcaaacagcaaaaagaagtagccgccagttaacgggggagcagttttgtattacagttatgaagcaaattgctgattacaaggtagatatccgggagttcatgttgtagcttttaaagatgcagatacacttcacccatgcagcttagtttgaaaaaacgtctgagttgctgaagtccgttgtcatgcttgaggaacttatttgttgagtggtaggagctaagcgtttaataggaagttcatatttattggaattttgcaaattaaatttccttctttttgccaattcttactaagtgtgttgagatgaaacatgtaccagattactcattttgatcctaaaacaaaaggattttgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="53772" stop="55649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54072" g_stop="54238" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54239" i_stop="55040" i_length="802">
            <donor d_prob="0.887" d_score="0.96"/>
            <acceptor a_prob="0.936" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55041" g_stop="55348" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="470" r_length="303" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="481"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E607293" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54072" e_stop="54238"/>
          <exon e_start="55041" e_stop="55348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACGGAGACACAATAAAACAATCCAGGCGAAGTAGGAAAAGAAAGAAACAAGCTGAGCATAAATTATCTATACCAAGGTCTAAGATATACTCAGGTACCGTATCAGGGTCAAACAGCAAAAAGAAGTAGCCGCCAGTTTATGGGGGAGCAGTTTTGTATTACAGGTAGTTATTTAAATTATTTTGCAGCATGTTCGTTTTCAAAGTGGTTTGTTCGAGTCATATTATTTATTTCAGACTGTGATTCTGTTTTGTGGAAGAAAAATTGTATCTGGTATTGTTTTAGTTGAAACTATCAAGTACATTTGTTTCATGATGCTGTATTTTGGAAAATTATAAAGTAGTTAGGAAGTTTAAATGTCACTATAGTTTTAAATGCCTGTAATTGTTGTAGTCTACCTGAAATCAAGTAAAAAACTAACATAGAATCCTTCAAACTGCTGCCTGTCATCTCTATTATAATAAGGATGATGATTCTGCTTTGAATTCTCTACACCTTTTTACACTGAACATTCTGGATGTATAATGGTTGTGTGATCAAAGACATGTCCTATATACCATTTATCGTAGATAGATTTGAGAATAGGTGTGATAGCAAGATCCTTTTTTTTGTCTTCTTTTCCCTGTATTGAACCAACGTAATGATATAGAGAAAAAGAGACCCTTCACTCACACCAATAGAATGGAAGGACTAGAAAAGTATATTTTTGGTAGTTATATGTGTATTAGAATAGCATAGAAATCTACTTTTTTTTCCAGAAAAAGAGTTGGGTATCACAGCACTATATCAAACAATAGATGGCTAACGGATTAATTGAACATCAAGTTTGCTATGCATTAAGAAGAATCGATTGTTGGTTGTTTTGTTTAGTAGAATTGCCTCAATTCATTTACTTAACTATAAAGCTGGTTTTCATTTCTGTGCAACTCTCATGTACTAAGTTCTTCTCTCTGGCATTGATTGCAGTTATGAAGCAAATTGCTGATAACAAAGGTAGATATCGGAGAGTTCATGTTGTAGCTTTTTGAAAGATGCAGATACACTTCACCTGTGCAGCTTAGTTTGAAAAAACGCGTCTGAGTTGCTGAAGTCCGTTGCCATGCTTGAGGAACTTATTTGTTGAGTGGTAGGAGCTAAGCGTTTTAACAGGACGTTCATATTTATTGGAATTTTGCAAATCGAATTTCCTTC-TTTTGCCAATTCTTACTAAGAGTGTTGAGATGAACCATGTACTGGATTACTCATTTTGTTCCTAAAACAAAAGGATTTTGCTA</genome_strand>
        <mrna_strand>TCTGACGGAGACACAAACAAACAATCCAGGCGAAGTAGGAAACGAAAGAAACAAGCTGAGCATAAAGTATCTACATCAAGGTTTAAGATATATTCAGCTACCCTATCAGGGTCAAACAGCAAAAAGAAGTAGCCGCCAGTTAACGGGGGAGCAGTTTTGTATTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAAGCAAATTGCTGATTAC-AAGGTAGATATCCGGGAGTTCATGTTGTAGC-TTTT-AAAGATGCAGATACACTTCACCCATGCAGCTTAGTTTGAAAAAA--CGTCTGAGTTGCTGAAGTCCGTTGTCATGCTTGAGGAACTTATTTGTTGAGTGGTAGGAGCTAAGCG-TTTAATAGGAAGTTCATATTTATTGGAATTTTGCAAATTAAATTTCCTTCTTTTTGCCAATTCTTACTAAGTGTGTTGAGATGAAACATGTACCAGATTACTCATTTTGATCCTAAAACAAAAGGATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573737" ref_strand="+" ref_description="SGN-E573737 [33096]">
      <seq>gataatagtctttttttctcttagtccttttctcatgtgaccgtcgccgcacggttcaccgtcgacgggaaaattagggctaatttttgggaatttcgaaaaaatgttctaattttccaattgaaaattttgatgatagtgttcatgagtgtgtgttggtattatttgaattcgtttcgaatttttttttgaaattaggtcgaaatttcaggcgaatatattgttgatgattttgaggaattgtatttgtgcctaagatatgatattaggtagattagtgaaaagaggttggctgatttggtttccatgttgtatgacgatggatgataacaatcaaattagttctttggaagatagcatcattcatcaatgcaaaaacgccaattctccaacacaatttgccaacatttctcttaaaactgatagcagcagaaggagatacatagctacagaaatagaaaagtttggaaaagggaacatttcagctcaagccttcacgttccgtgagttgtgtcttgcaactcaaaacttcgactatgaatgtttgcttggttcaggtggtttcgggaaagtgtacaaaggccacattaaaaaggcaagaatatggctgttgctgtgaagcaacttgacaggaatggtttcccaaggaactaaaagagtttccttgtggaggtcctactgttgagtcttcctccgtcactctaaccttgtcaatttgataggatactgtccagacggtgatcagagaatattagtctacgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="56309" stop="58917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56609" g_stop="57037" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57038" i_stop="58173" i_length="1136">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58174" g_stop="58355" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="606" r_length="184" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58356" i_stop="58461" i_length="106">
            <donor d_prob="0.930" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58462" g_stop="58617" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="766" r_length="160" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E573737" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56609" e_stop="57037"/>
          <exon e_start="58174" e_stop="58355"/>
          <exon e_start="58462" e_stop="58617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAATAGTCTTTTTCTCTTCTTTTTTTTTTCTCCGGTGACCGTCGCCGCACGGTTCACCGTCGACGGGAAAATTAGGGCTAATTTTTGGGAATTTTCAAAAAATGTTCTAATTTTCCAATTGAGAATTTTGATGATAGTGTTCATGAGTATCTGTTGGCATTATTTGAATTCGTTTCGAAAAAAAAAATAACTTTCAAATTAGGTCAAAATTTCAGGCCAATATATTGTTGATGATTTTGAGGAATTTTATTTGTGCTTAAGATATGATATTAGGTAGATTAGTGAAAAGAGATTGGCTGATTTGGTTTCCATGTTGTATGACGATGGATGATAACAATCAAATTAGTTCTTTGGAAGATAGCATCATTCATCAATACAAAAGCGCCAATTCTCAAGCACAATTTGCCAACATTTCTCTTAAAACTGGTAATTTTTATGCGTTTTTTCCTCACAATCTTTCGTAGTGTAAGATTGTTTGCTCTATTGGAAACAGCCTCGAAAAGGTATGGTCTCCAGACCTCACTTGTGGGATTATAGTTACTGGACATTTTGTTGTTGGGGTTACATTTTGCAATTTGTTATATGAATTCCTCTGTTTTTTTATGTGTTATATTATGGGAAATGTAATGAATTTACCTTGGAATAGGGTAGTTTTGCTCTCCGTTATAAGTCGTTTGCGTGTTTGGCGTTGATAAGTTATTGGACATTGACTTTAACAAGCTCCAATTTTGTAAGATTATACTGGATTTGTTGTTATCGTTTGACTGTAATGAGTTACAATGTGGAGTAGGTAGATTGTACATGTCAAACTACTTACAAAAGTGTCCAGGTTTACCTTCTTCTATATGAAATATCGTAATTTACTCTCATTTAGATGTCATTCGTGCTGTTGTTGTTAACGAATTATTTGGTCCTCGAGTTTAATGAGCTCTAATGTGGAGTTGGTAGATTGTACATGTCAAAATACTATAAGAATAATGTCTAAATTTACCTTCTTCTATGTGAAGTATCATCATTTTACTTTCCTTTATATGTTATTCATGTTGTTGTTGTTGTTAACAAACTATTTGTGGAGTAGGCAGATAAATTCTACGTGTCAAAATACTTCAAGAAAAATGTCAACATGTACCTTCTTCAATACTAATATATCTTAACTTTACTCTCCGTCAAATGTCATTCATGCCCTTCGTTAACCAGTTCCAATGTGGAGTGGGTAGATTCGACGTGTCAAAATACTTCAAGAAAAAGGTCCAAAGTTACTCCTCTTCCTTTGAGATGTGCTCATCAAATTCGAGATGTAACTATTTGCTAACAACATGCGTATGAATGATTAGTAAGTATAATAAGGGTAAATTTAGACATTTCGTAGAGTAGAGGAGTACTTTTATACTTTTCCCTTGTATTATTGATTTGATGGTCCCCCTTTTATGTTAACCCACAATTCGTTGTTCATTAGTTTTTTTGTTGAAACCTTGCAAATGATTAATGAACACCGTTCACTAATATTGCTTTCGATCAAGGCATTGACAATTGTTTGTTTTCTATTTGTGCAAAATATTCAGATAGCAGCAGAAGGAGATACATAGCTTCAGAAATAGAAAAGTTTGGAAAAGGGAACATTTCAGCTCAAGCCTTCACGTTCCGTGAGTTGTGTCTTGCAACTGAAAACTTCGATTCTGAATGTTTGCTTGGTTCAGGTGGGTTTGGGAAAGTGTACAAAGGCCACATT-AAAA-GCAAGAATATGGTACTCTCCCTTCATTTTGTTTGTTTGAAAATTGATAAGCTTTCGTCAACTCTAAAAGAAAACAAAGGGGAAATGATTTAACTATTGTTTTTCTCATGTTGCTTAGGCTGTTGCTGTGAAACAACTTGACAGGAATGGTTT-CCAAGGAAC-GAAAGAG-TTCCTTGTGGAGGTCCTGCTGTTGAGTCTT-CTCCGTCACTCTAACCTTGTCAATTTGATAGGATACTGTTCAGACGGTGATCAGAGAATATTAGTTTACGAGCTC</genome_strand>
        <mrna_strand>GATAA-TAGTCTTTTTTTCTCTTAGTCCTTTTCTCATGTGACCGTCGCCGCACGGTTCACCGTCGACGGGAAAATTAGGGCTAATTTTTGGGAATTTCGAAAAAATGTTCTAATTTTCCAATTGAAAATTTTGATGATAGTGTTCATGAGTGTGTGTTGGTATTATTTGAATTCGTTTCG------AATTTTTTTTTGAAATTAGGTCGAAATTTCAGGCGAATATATTGTTGATGATTTTGAGGAATTGTATTTGTGCCTAAGATATGATATTAGGTAGATTAGTGAAAAGAGGTTGGCTGATTTGGTTTCCATGTTGTATGACGATGGATGATAACAATCAAATTAGTTCTTTGGAAGATAGCATCATTCATCAATGCAAAAACGCCAATTCTCCAACACAATTTGCCAACATTTCTCTTAAAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGCAGAAGGAGATACATAGCTACAGAAATAGAAAAGTTTGGAAAAGGGAACATTTCAGCTCAAGCCTTCACGTTCCGTGAGTTGTGTCTTGCAACTCAAAACTTCGACTATGAATGTTTGCTTGGTTCAGGTGGTTTCGGGAAAGTGTACAAAGGCCACATTAAAAAGGCAAGAATATG..........................................................................................................GCTGTTGCTGTGAAGCAACTTGACAGGAATGGTTTCCCAAGGAACTAAAAGAGTTTCCTTGTGGAGGTCCTACTGTTGAGTCTTCCTCCGTCACTCTAACCTTGTCAATTTGATAGGATACTGTCCAGACGGTGATCAGAGAATATTAGTCTACGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579611" ref_strand="+" ref_description="SGN-E579611 [86741]">
      <seq>ctcttctatctttctgtctctctctcagtatacacagtactgattgtctttgttctgttcttctccatcatcacttgcagacaaacaagaaattaaaacccttgtaaaaccctaaaaaaagattccaacttttacagtttcaaccccatattactcattttgtttattgtgtggttaaaattttaaaaaaataaatatttgtgaagtttatcaacacggccgctcagtcttcccttttgagctgcactagcaataagctagttggcagaagaagtagagctactgctgctgtggctatggcatttttgggtctttctgttcaatcttccccttttaaacccacttcttatgtttggttttctcctcattctttctcttctcgcactttttgggcttcttctggtaaagcccttcacaggggggaagattgcaaaactcggagtatagaaaatgcatcttccagcttagctgtgcttggcgatcccattaaacaaatatcaagtcatgaaaggaagttattctctagtggattacaacagaaaattgaagaagacagtatttacggatggaatgctgaaattgatgctattaaagctcttaaagcaaaaagcgcctataatagttataaaaagatttcagcggcaaattgcagtgttagcgcctccacaaatcggaaggtgaaagatgaacattttgatgttccaattgaagtccatacgagaatgatgcgtgagacgtgtcacctctagctattctgctacaacctgtattccagaggcagttatcttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="60461" stop="63311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60762" g_stop="61182" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61183" i_stop="62635" i_length="1453">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62636" g_stop="63011" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="793" r_length="375" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E579611" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60762" e_stop="61182"/>
          <exon e_start="62636" e_stop="63011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTATCTCTCTGTCTCTCTCT-TTCATACAGAGTACTGATTGTGTTTGTTGTGTTCTTCTTCACCATCACTTGCAGACAAACAAGAAATTAAAAACCCTTGTAAAACCCTAAAAAAAGATTCCAACTTTTACAGTTTCAACCCCATTTTTAACTTATTTTGTTTATTGTGTGGTTAAAGTTTTTAAAAAATTAAATATTTGTGAAGTTTATCAACACGGCCGCTCAGTCTCCCCTTTTGAGCTGCACTAGCAATAAGCTAGTTGGCAGAAGAAGTAGAGCTACTGCTGCTGTGGCTATGGCATTTTTGGGTCTTTCTGTTCAATCTTCCCCTTTTAAACCAACTTCTTATGTTTGGTTTTCTCCTCATTCTTTCTCTTCTCGTACTTTTTGGGCTTCTTCTGGTAAAGCCCTTCACAGGTTTGACTCTGAACCTCACTAAAGTTGCATTCTTTATACTTTATGTTATGTGATTATACTGTTGTTTTGATAAAGTTTCTGTCTTTACACTTTAAAACTTCTTGTTCTTCTGTTTTACTGGTGTTTTGGGAGTTTTTCCTGTGTGGGTGCTTATCTTTTGTTTTATTTGGTTACTCCTTGTCCACTTTTGGATTTCAGGGTGAATAATACTATTTGGGTTTCTTGTCCTTTTTATGTTTAAATGCTTGCTGAAATGAGGTTTTGGTGTAGTTGGATTTTTATGAAGGGTTTTGATGATGTACTGGACTTCATAATTGGACTATTACTGGTATTAGTATTTGTTATAGCCTGTCTCTGTATGGTGAGGGTGGAGTTTGATACTCTCTAGACACTTGGAATCAAGTCGAGTGATGCTTTTGTACTCCCATAATACCTCTTTGATGCTGAAGTTTTAATGAACTAATTTAGTTGCTTAATAGATAGTCTCTGGTTCAATTCCAAGCAGAGGTGATTTCTTGTCATTTGTCCAAGACTAGGTGGACGAAGTTATACAGTACCTGTGCTTATGGGTGGTAGCAGGTACCTCACGGAATAAGTTGAGGTGCACGCAAGCTGGCCTAACACCATGGTTATTAAAAAAAAGTACTATCGTTGGTAGTTGATAATACAGTTTGGATGAAGATGATGGGCAAGTCAATTATCAGTTTTTTAAGGGGTCGATTGGTACGAGGGAATAATCTCGGGATAAAATGCAGGAGGTTAGAAGTACTAATTAATTCGGAATCATTTATCTCATCATTTGTACTACAATAAATGAGATAAGTTATCTCATAATATAATGGGGTATCCCAATCCGTGGGATAACTTTGTCTATCCCATCTGGCATCCCCCATACCAAACAACTCCTAAGAGAAACGTCAGGTCTCAATGGAGAAATATTCTAGTGCTGTTTATTAACTTCTATTATAGGTGGGGCTCCTTCTTATTCTCGTTCTTTGTCTTGTCTTATAAGCTAGAGTGATAATATAAAAGAAGGATCCTTTCTGGCACGATCTTTGTATGATATCATAAAATAAGAAAATGCATGCAGGAAAGAGCTAGAACAGCCCCGAAATCCCTTGTGATTACTGTGGAGGGTGTCAATTTTGTGTTTATTATGGAAATTTGGAACGTATTGGTGATTACGAAATATCGTCTAATATCTTTTTGAAAAGATTGCCATTTGTTTTCTTCAAAAGAAGAGGAATTTATGCTTCTTTATCCAGTACTGTAATGCTGATATTATTCCAGTTAGATATCTGTGAAGAGTTTTTGACCATGTATGATCTGATGAATGGGGAGAGAATTGAAAGCATAATGCCAGCTATTTAATGTAGTTTGTGAAGTCCCAGTTTATAGCTAATTGATTAAACCTCTCATTATTTTCCGATTACAAATTGAATATCATTTGCAGGGGGGAAGATTGCAAAACTCGGAGTATAGAAAATGCATCTTCCAGCTTAGCGGTGTTTGGCGATCCCATTAAACAAATATCAAGTCATGAAAGGAAGTTATTCTCTAGTGGATTACAACAGAAGATTGAGGAAGACAGTATTTACGGATGGAATGCTGAAATTGATGCTATTAAAGCTCTTAAAGCAAAAAACGCTTATAATAGTTATAAAAAGATTTCAGCGGCAAATTGCAGTGTTAGCGCCTCCATAGATCGGAAGGTGAATGATGAAAATTCTGATGTTCCAATTGAAGTCAATACGAGAATGATGCGTGAG-CGTGTTACCTCTAGCTATTCAGCTACAACCTGTATTTCAGGAGGCAGCTTATCTTCAAAA</genome_strand>
        <mrna_strand>CTCTTCTATCTTTCTGTCTCTCTCTCAGTATACACAGTACTGATTGTCTTTGTTCTGTTCTTCTCCATCATCACTTGCAGACAAACAAGAAATT-AAAACCCTTGTAAAACCCTAAAAAAAGATTCCAACTTTTACAGTTTCAACCCCA-TATT-ACTCATTTTGTTTATTGTGTGGTTAAA-ATTTTAAAAAAATAAATATTTGTGAAGTTTATCAACACGGCCGCTCAGTCTTCCCTTTTGAGCTGCACTAGCAATAAGCTAGTTGGCAGAAGAAGTAGAGCTACTGCTGCTGTGGCTATGGCATTTTTGGGTCTTTCTGTTCAATCTTCCCCTTTTAAACCCACTTCTTATGTTTGGTTTTCTCCTCATTCTTTCTCTTCTCGCACTTTTTGGGCTTCTTCTGGTAAAGCCCTTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAAGATTGCAAAACTCGGAGTATAGAAAATGCATCTTCCAGCTTAGCTGTGCTTGGCGATCCCATTAAACAAATATCAAGTCATGAAAGGAAGTTATTCTCTAGTGGATTACAACAGAAAATTGAAGAAGACAGTATTTACGGATGGAATGCTGAAATTGATGCTATTAAAGCTCTTAAAGCAAAAAGCGCCTATAATAGTTATAAAAAGATTTCAGCGGCAAATTGCAGTGTTAGCGCCTCCACAAATCGGAAGGTGAAAGATGAACATTTTGATGTTCCAATTGAAGTCCATACGAGAATGATGCGTGAGACGTGTCACCTCTAGCTATTCTGCTACAACCTGTATTCCA-GAGGCAG-TTATCTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568300" ref_strand="+" ref_description="SGN-E568300 [12561]">
      <seq>ctaaagctgagcagctggttgctgtgaatagatttcgtaactgggcagctaagtactgtgctgatgcaaagtacatgaatgttggaagtgacacacagttgcgtcagctgttttttggtggcatccagaatagaaggaacgttgatgagagtctaccaaatgagaaagcaattcaaagttccaaatgtcgatcaagtaattgcaagaaggaacagaaggctcccaccaaatttcgtaaaatccatctacataggatttgtgatcctatcaacactgagattttcactgccagtggttggccttctgttagtggagatgctttgaaggctctcgctggcaaagtttctgcagactttgatcattttctgatgaagtggatggcaatgctgaggaagttcctgaaacaagcgttgatgaagctttaactacaaataacgacagctctcagtcaaaacccaggaaatttcagcttatggaacagcctaccacggcctttggcaggtgggcagaaaggcaattgaggcttgccatgccattgcaggccttatcgtcgaagtttgctccatagactctttaatatccaagttgatcctccccttgcagggtcatgatgtgtcaggtgaaaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="64384" stop="68024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64684" g_stop="64816" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64817" i_stop="66344" i_length="1528">
            <donor d_prob="0.125" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66345" g_stop="66801" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="603" r_length="470" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66802" i_stop="67696" i_length="895">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67697" g_stop="67724" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="631" r_length="28" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E568300" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64684" e_stop="64816"/>
          <exon e_start="66345" e_stop="66801"/>
          <exon e_start="67697" e_stop="67724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGCTGAGCAGCTGGTTGCTGTGAATAGATTTCGTAACTGGGCAGCTAAGTACTGTGCTGATGCAAAGTACATGAATGTTGGAAGTGACACACAGTTGCGTCAGCTGTTTTTTGGTGGCATCCAGAATAGGTATAAAGCTTTCAAAGAAGAGTACTTTCTTGCAGAGCAACATAATTAAAATTGTTTTTGTGTGTTGAATAACGTGCATTTTACAACACATTTCTCGTTCATCTGATACTGGTTGCCCAAATAGCATCCCCCTCTGTAATCTTACACCAATGTGGATATTATTGATTGTTGCTGTATGCAAGTCATTTATGGTGGAGTAGCTGTCCTTGGAAAATCCAAATGCAAGGCCAGACAGGGGGAATAAAATATGTATAGCAGGTGTAGTCACCACATGAAGAACACAGGCCATAATGCAGTCATGCTTTTACTGATTTAACATAATTCCACCATATAAGTGTTATTTAATATAGTTAGGTTTAATTGCTTACCTAAGGTACATGAGAGGTGTGAAATATATATTGCCAATACTCAAGGCTTCACAAAAGTGGAGGGAGTTGAGGAGTCAAGTATAGTGCCTAAATCACTACACCAAAAAACCAAGAAGTACAAACATCTATATTTCAATCTCTGTGTTGCTTCTATGCAGATTTTGCCTGTGCGAGAGGTGATGGCATGCTAGTGCATGAGATTCAACTTTCGAGGATCTTTGTTCTTGCTGCAGTCTTAAAGTAGTAATTTGCAGATGCCATTTATACAGCTACATTGAAATAGAGTTAACCTCTGGAGTTTTGCAGTTGCAATATTTTACCCCACTGTATAAATTTTAACACCCTAGAATGAGGAGACAGTTCACCTAGAATGCTAGCCCCATTTCAGTCCAGATGATATGATATGGGAAATGTCACTCTAACTTATCTGTCCATCATGCTTCAAATCTCAATGATATTTTTTCTTTGTGCTGTGCATCTAAAAGTTGTTGTGTCAATATGTGTGCTCAGATCAATGGTTGTTGCTGAAATATTTGTTGGTGACATTGAATCTTTCCGCATACCAGCAATGAGAGGAAATACTACCTCTGTCCAACGTCCCATAATTAGAGTTCCTTTTCAAAGGCTTTGGCAAATTTTGGTAGTCCCTTAAAGCAGGGTCCGGGGGGGGGGGGTGTAGAGTGTACACAGATATAGGTTAATTTGTTTTCTTAAAATAAAATTTATAGTTTTATAAGCTACACAAAATATGCTAGAGTTTGCAAATTTTTTTCATTCCAAAATGCTATGCATCTTAATGATTTAGTCAAATTGTTCTGTCCTTTGGGTCTGAAGTAAAAAAGTGATCATAAATTTGGGATGAAGGGAGTACAAACATTTTCATTGCCTGTATGGACCAATATAATTATGAAACTGTTGTTAGCTTCCAAGTGAGAAGATGAGTTTTTTCCAACTCTGAGCAGTATAGACAAGTTCTCAGGCTTCAATTGAAGATATCCTTAGTGAGTGCTATATTTTCCCTTTTACAATTTGACTTAGGGTAATGGCAGCATATAATGTCTTTAGTTTCTTCTTTTCCTTCACATTGCTTCGTGCTTATTCAGTCTATAAGTACCTTTCCTTTGATGTTCTTTATCTTCCCAAAAATAATTGCTTTACAGAAAGAATGTTGATGAGAGTCTACCAAATGAGAAAG-AATTCAAAGTTCCGAATGTTGATAAAGTAATTG-AAGAAGGAA-AGAAGGCTCCCACCAAATTTCGTAAAATCCATCTACATAGGATTTGTGATCCTATCAACACTGAGATTTTCACTGCCAGTGGTTGGCCTTCCGTTAGTGGAGATGCTTTGAAGGCTCTCGCTGGCAAAGTTTCTGCAGACTTTGAT-ATTTT-TGATGAAGTGGATGGCAATGCTGAGGAAGTTCCTGAAACAAGCGTTGATGAAGCTTTAACTACAAATAACGA-AGCTCTCAGTCAAAATCCA-GAAATTTCAGCTTATGGAACAGCCTACCAC-GCCTTTGG-AGGTGGGCAGAAAGG-AATTGAGGCATGCCATGCCATTGCA-GCCTTAT-GT-GAAGTTTGCTCCATAGACTCTTTAATATCCAACTTTATCCTCCCCTTGCAGGCAAGTTGCTTTGTGTTTTGTATATAATCTTTCCTCATGGAACAACCTAAGAAGTTCGGGCAAGTTTTACTTGGCTGTCAAATTTGTTTGTTAATCTGCTACCAAATAATTGTTTTTACTTCTACTTTTATTTTATATGATTGTGGTATGTGATGAGTTAAAATGGAGAAGCGTGGTGAGTGAGGATTCATATAGGTGACCCCAACACTTGTTTAAGACTGATGCATGGTTGTTGTTTGTTGTTGCACTCAGCTCGCGCGGGGTCCTGGGATATTTAAAGGAGAGAAAGAAACTAATCCTCAACTGATTGTTTAAAATAATTTTTCTACTGACGTAATAGTATGTGAGAATGATATTTCCTTAAGTTACATGATGATACATTAAGAATAGTTAGTGTTTCCTCTCATTTATGAATAACTGAAATTATTTACCTCGTCTGTGGAAGCTTTTCCCAGTATTAGTAAAATTACTCATCAATTATGTATTTCTGAGAATTTTTTTTGCCTCGGATGCATTTTGTTTGAGCGACAAAAAACTACCCTGACCTAGTTATTCACGGCTCACTGTTTAATCAGGCCTTAGTACGGATTATTATTGTTGCCTCACCACTGTTTCAAGGAGTCTAGGTGTTCAAAATCGTTGAATGAGGGTTTTCTATAGGGCAGGTTACTCAAGAGCTTTCTTTTGGACTCTTGATTGTGATAGGTTAGCAAGGGATTGGAGATGGAAGTAGCCAACAGGATGTTTGGTTGAGGTGGAATGTAGAGTAACCATAACACCATGGAAGATGGTTTTGAGGCAAACTGAGTTGTATCTTTCTATGCCGTCATGCTTTTTTCCAAAATTGATGTTTTGACTAATTTGTTCTCTAAAGGCATTTCTCTTTCTATCTCAGGGTCATGATGTGTCTGGTGAGAATGGAC</genome_strand>
        <mrna_strand>CTAAAGCTGAGCAGCTGGTTGCTGTGAATAGATTTCGTAACTGGGCAGCTAAGTACTGTGCTGATGCAAAGTACATGAATGTTGGAAGTGACACACAGTTGCGTCAGCTGTTTTTTGGTGGCATCCAGAATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAACGTTGATGAGAGTCTACCAAATGAGAAAGCAATTCAAAGTTCCAAATGTCGATCAAGTAATTGCAAGAAGGAACAGAAGGCTCCCACCAAATTTCGTAAAATCCATCTACATAGGATTTGTGATCCTATCAACACTGAGATTTTCACTGCCAGTGGTTGGCCTTCTGTTAGTGGAGATGCTTTGAAGGCTCTCGCTGGCAAAGTTTCTGCAGACTTTGATCATTTTCTGATGAAGTGGATGGCAATGCTGAGGAAGTTCCTGAAACAAGCGTTGATGAAGCTTTAACTACAAATAACGACAGCTCTCAGTCAAAACCCAGGAAATTTCAGCTTATGGAACAGCCTACCACGGCCTTTGGCAGGTGGGCAGAAAGGCAATTGAGGCTTGCCATGCCATTGCAGGCCTTATCGTCGAAGTTTGCTCCATAGACTCTTTAATATCCAAGTTGATCCTCCCCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGATGTGTCAGGTGAAAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437513" ref_strand="+" ref_description="SGN-E437513 [cSTA-4-C15]">
      <seq>gcaaagtacatgaatgttggaagtgacacacagttgcgtcaactgttttttggtggcatccagaatagaaggaatgttgatgagagtctaccaaatgagaaagaattcaaagttccgaatgtagataaagtaattgaagaaggaaagaaggctcccaccaaatttcgtaaaatccatctacataggatttgtgatcctatcaacactgagattttcactgccagtggttggccttctgttagtggagatgctttgaaggctctcgctggcaaagtttctgcagactttgatatttttgatgaagtggatggcaatgctgaggaagttcctgaaacaagcgttgatgaagctttaactacaaataacgaatctctcagtcaaaacccagaaaattcagcttatggaacagcctaccacgcctttggaggtgggcagaaaggaattgagtcttgccatgccattgcagccttatgtgaagtttgctccatagactctttaatatccaactttatcctccccttgcagggtcatgacgtgtcaggtgaaaatggacggattcattgctccctgaatattaatactgaaactgggcgcttgtctgcaggagaccaaatttacagaaccagcctgctctggagaagataggtataaaattcgccagcttttgtagctgcgaggggaattccttgattgtggctgactatgggcagttggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="64449" stop="68488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64749" g_stop="64816" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64817" i_stop="66344" i_length="1528">
            <donor d_prob="0.125" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66345" g_stop="66801" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="525" r_length="457" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66802" i_stop="67696" i_length="895">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67697" g_stop="67792" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="620" r_length="95" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67793" i_stop="68093" i_length="301">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68094" g_stop="68186" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="710" r_length="90" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68187" i_stop="68265" i_length="79">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.416" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68266" g_stop="68272" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="717" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E437513" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64749" e_stop="64816"/>
          <exon e_start="66345" e_stop="66801"/>
          <exon e_start="67697" e_stop="67792"/>
          <exon e_start="68094" e_stop="68186"/>
          <exon e_start="68266" e_stop="68272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTACATGAATGTTGGAAGTGACACACAGTTGCGTCAGCTGTTTTTTGGTGGCATCCAGAATAGGTATAAAGCTTTCAAAGAAGAGTACTTTCTTGCAGAGCAACATAATTAAAATTGTTTTTGTGTGTTGAATAACGTGCATTTTACAACACATTTCTCGTTCATCTGATACTGGTTGCCCAAATAGCATCCCCCTCTGTAATCTTACACCAATGTGGATATTATTGATTGTTGCTGTATGCAAGTCATTTATGGTGGAGTAGCTGTCCTTGGAAAATCCAAATGCAAGGCCAGACAGGGGGAATAAAATATGTATAGCAGGTGTAGTCACCACATGAAGAACACAGGCCATAATGCAGTCATGCTTTTACTGATTTAACATAATTCCACCATATAAGTGTTATTTAATATAGTTAGGTTTAATTGCTTACCTAAGGTACATGAGAGGTGTGAAATATATATTGCCAATACTCAAGGCTTCACAAAAGTGGAGGGAGTTGAGGAGTCAAGTATAGTGCCTAAATCACTACACCAAAAAACCAAGAAGTACAAACATCTATATTTCAATCTCTGTGTTGCTTCTATGCAGATTTTGCCTGTGCGAGAGGTGATGGCATGCTAGTGCATGAGATTCAACTTTCGAGGATCTTTGTTCTTGCTGCAGTCTTAAAGTAGTAATTTGCAGATGCCATTTATACAGCTACATTGAAATAGAGTTAACCTCTGGAGTTTTGCAGTTGCAATATTTTACCCCACTGTATAAATTTTAACACCCTAGAATGAGGAGACAGTTCACCTAGAATGCTAGCCCCATTTCAGTCCAGATGATATGATATGGGAAATGTCACTCTAACTTATCTGTCCATCATGCTTCAAATCTCAATGATATTTTTTCTTTGTGCTGTGCATCTAAAAGTTGTTGTGTCAATATGTGTGCTCAGATCAATGGTTGTTGCTGAAATATTTGTTGGTGACATTGAATCTTTCCGCATACCAGCAATGAGAGGAAATACTACCTCTGTCCAACGTCCCATAATTAGAGTTCCTTTTCAAAGGCTTTGGCAAATTTTGGTAGTCCCTTAAAGCAGGGTCCGGGGGGGGGGGGTGTAGAGTGTACACAGATATAGGTTAATTTGTTTTCTTAAAATAAAATTTATAGTTTTATAAGCTACACAAAATATGCTAGAGTTTGCAAATTTTTTTCATTCCAAAATGCTATGCATCTTAATGATTTAGTCAAATTGTTCTGTCCTTTGGGTCTGAAGTAAAAAAGTGATCATAAATTTGGGATGAAGGGAGTACAAACATTTTCATTGCCTGTATGGACCAATATAATTATGAAACTGTTGTTAGCTTCCAAGTGAGAAGATGAGTTTTTTCCAACTCTGAGCAGTATAGACAAGTTCTCAGGCTTCAATTGAAGATATCCTTAGTGAGTGCTATATTTTCCCTTTTACAATTTGACTTAGGGTAATGGCAGCATATAATGTCTTTAGTTTCTTCTTTTCCTTCACATTGCTTCGTGCTTATTCAGTCTATAAGTACCTTTCCTTTGATGTTCTTTATCTTCCCAAAAATAATTGCTTTACAGAAAGAATGTTGATGAGAGTCTACCAAATGAGAAAGAATTCAAAGTTCCGAATGTTGATAAAGTAATTGAAGAAGGAAAGAAGGCTCCCACCAAATTTCGTAAAATCCATCTACATAGGATTTGTGATCCTATCAACACTGAGATTTTCACTGCCAGTGGTTGGCCTTCCGTTAGTGGAGATGCTTTGAAGGCTCTCGCTGGCAAAGTTTCTGCAGACTTTGATATTTTTGATGAAGTGGATGGCAATGCTGAGGAAGTTCCTGAAACAAGCGTTGATGAAGCTTTAACTACAAATAACGAAGCTCTCAGTCAAAATCCAGAAATTTCAGCTTATGGAACAGCCTACCACGCCTTTGGAGGTGGGCAGAAAGGAATTGAGGCATGCCATGCCATTGCAGCCTTATGTGAAGTTTGCTCCATAGACTCTTTAATATCCAACTTTATCCTCCCCTTGCAGGCAAGTTGCTTTGTGTTTTGTATATAATCTTTCCTCATGGAACAACCTAAGAAGTTCGGGCAAGTTTTACTTGGCTGTCAAATTTGTTTGTTAATCTGCTACCAAATAATTGTTTTTACTTCTACTTTTATTTTATATGATTGTGGTATGTGATGAGTTAAAATGGAGAAGCGTGGTGAGTGAGGATTCATATAGGTGACCCCAACACTTGTTTAAGACTGATGCATGGTTGTTGTTTGTTGTTGCACTCAGCTCGCGCGGGGTCCTGGGATATTTAAAGGAGAGAAAGAAACTAATCCTCAACTGATTGTTTAAAATAATTTTTCTACTGACGTAATAGTATGTGAGAATGATATTTCCTTAAGTTACATGATGATACATTAAGAATAGTTAGTGTTTCCTCTCATTTATGAATAACTGAAATTATTTACCTCGTCTGTGGAAGCTTTTCCCAGTATTAGTAAAATTACTCATCAATTATGTATTTCTGAGAATTTTTTTTGCCTCGGATGCATTTTGTTTGAGCGACAAAAAACTACCCTGACCTAGTTATTCACGGCTCACTGTTTAATCAGGCCTTAGTACGGATTATTATTGTTGCCTCACCACTGTTTCAAGGAGTCTAGGTGTTCAAAATCGTTGAATGAGGGTTTTCTATAGGGCAGGTTACTCAAGAGCTTTCTTTTGGACTCTTGATTGTGATAGGTTAGCAAGGGATTGGAGATGGAAGTAGCCAACAGGATGTTTGGTTGAGGTGGAATGTAGAGTAACCATAACACCATGGAAGATGGTTTTGAGGCAAACTGAGTTGTATCTTTCTATGCCGTCATGCTTTTTTCCAAAATTGATGTTTTGACTAATTTGTTCTCTAAAGGCATTTCTCTTTCTATCTCAGGGTCATGATGTGTCTGGTGAGAATGGACGGATTCATTGCTCCCTGAATATAAATACTGAAACTGGGCGCTTGTCTGCAAGGAGACCAAATTTACAGGTTTATTTCCTTCACTGACTTCTTGATTGTCATGCATTTTGATTCTCAAATATGCTATCAGCTACTGGTTTATCTTGTTTTAGGTGTCGACCACCCACAATTCTTTTCAAGTTTTGATATAAACCCTATAAATTTACTAAAATGTTGTAAATGTTCTCCTTTATCATTAATTGCGCTCATGCTGTATTACATGGCTCAAGTAAAGAGAAATCAAGTAATAACTTCAATGGTCATCGGTCATCACTTATGTTCCATTACTTTACTAGGATGATGTTTCAATGTTTATTTCTTTGGTTTACAGAATCAGCCTGCTCTTGAGAAAGATAGGTATAAAATTCGCCAAGCTTTTGTAGCTGCAGAGGGGAATTCCTTGATTGTGGCTGACTATGGGCAGGTATCTAGCTGCTTACTGGTTATAATAGTTAGTATTTCTTGAATTGCTTGCAAAAAACTAACAATTTTCTCGAAATTAGTTGGAAC</genome_strand>
        <mrna_strand>GCAAAGTACATGAATGTTGGAAGTGACACACAGTTGCGTCAACTGTTTTTTGGTGGCATCCAGAATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATGTTGATGAGAGTCTACCAAATGAGAAAGAATTCAAAGTTCCGAATGTAGATAAAGTAATTGAAGAAGGAAAGAAGGCTCCCACCAAATTTCGTAAAATCCATCTACATAGGATTTGTGATCCTATCAACACTGAGATTTTCACTGCCAGTGGTTGGCCTTCTGTTAGTGGAGATGCTTTGAAGGCTCTCGCTGGCAAAGTTTCTGCAGACTTTGATATTTTTGATGAAGTGGATGGCAATGCTGAGGAAGTTCCTGAAACAAGCGTTGATGAAGCTTTAACTACAAATAACGAATCTCTCAGTCAAAACCCAGAAAATTCAGCTTATGGAACAGCCTACCACGCCTTTGGAGGTGGGCAGAAAGGAATTGAGTCTTGCCATGCCATTGCAGCCTTATGTGAAGTTTGCTCCATAGACTCTTTAATATCCAACTTTATCCTCCCCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGACGTGTCAGGTGAAAATGGACGGATTCATTGCTCCCTGAATATTAATACTGAAACTGGGCGCTTGTCTGC-AGGAGACCAAATTTACAG.............................................................................................................................................................................................................................................................................................................AACCAGCCTGCTCTGGAG-AAGATAGGTATAAAATTCGCC-AGCTTTTGTAGCTGC-GAGGGGAATTCCTTGATTGTGGCTGACTATGGGCAG...............................................................................TTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590059" ref_strand="+" ref_description="SGN-E590059 [43647]">
      <seq>agaaggctcccaccaaatttcgtaaaatccatctacataggatttgtgatcctatcaacactgagattttcactgccagtggttggccttctgttagtggagatgctttgaaggctctcgctggcaaagtttctgcagactttgatatttttgatgaagtggatggcaatgctgaggaagttcctgaaacaagcgttgatgaagctttaactacaaataacgaatctctcagtcaaaacccagaaatttcagcttatggaacagcctaccacgcctttggaggtgggcagaaaggaattgagtcttgccatgccattgcagccttatgtgaagtttgctccatagactctttaatatccaactttatcctccccttgcagggtcatgacgtgtcaggtgaaaatggacggattcattgctccctgaatattaatactgaaactgggcgcttgtctgcaaggagaccaaatttacagaaccagcctgctctggagaaagataggtataaaattcgccaagcttttgtagctgcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="66122" stop="68453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66422" g_stop="66801" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66802" i_stop="67696" i_length="895">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67697" g_stop="67792" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="476" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67793" i_stop="68093" i_length="301">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68094" g_stop="68153" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="536" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E590059" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66422" e_stop="66801"/>
          <exon e_start="67697" e_stop="67792"/>
          <exon e_start="68094" e_stop="68153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGCTCCCACCAAATTTCGTAAAATCCATCTACATAGGATTTGTGATCCTATCAACACTGAGATTTTCACTGCCAGTGGTTGGCCTTCCGTTAGTGGAGATGCTTTGAAGGCTCTCGCTGGCAAAGTTTCTGCAGACTTTGATATTTTTGATGAAGTGGATGGCAATGCTGAGGAAGTTCCTGAAACAAGCGTTGATGAAGCTTTAACTACAAATAACGAAGCTCTCAGTCAAAATCCAGAAATTTCAGCTTATGGAACAGCCTACCACGCCTTTGGAGGTGGGCAGAAAGGAATTGAGGCATGCCATGCCATTGCAGCCTTATGTGAAGTTTGCTCCATAGACTCTTTAATATCCAACTTTATCCTCCCCTTGCAGGCAAGTTGCTTTGTGTTTTGTATATAATCTTTCCTCATGGAACAACCTAAGAAGTTCGGGCAAGTTTTACTTGGCTGTCAAATTTGTTTGTTAATCTGCTACCAAATAATTGTTTTTACTTCTACTTTTATTTTATATGATTGTGGTATGTGATGAGTTAAAATGGAGAAGCGTGGTGAGTGAGGATTCATATAGGTGACCCCAACACTTGTTTAAGACTGATGCATGGTTGTTGTTTGTTGTTGCACTCAGCTCGCGCGGGGTCCTGGGATATTTAAAGGAGAGAAAGAAACTAATCCTCAACTGATTGTTTAAAATAATTTTTCTACTGACGTAATAGTATGTGAGAATGATATTTCCTTAAGTTACATGATGATACATTAAGAATAGTTAGTGTTTCCTCTCATTTATGAATAACTGAAATTATTTACCTCGTCTGTGGAAGCTTTTCCCAGTATTAGTAAAATTACTCATCAATTATGTATTTCTGAGAATTTTTTTTGCCTCGGATGCATTTTGTTTGAGCGACAAAAAACTACCCTGACCTAGTTATTCACGGCTCACTGTTTAATCAGGCCTTAGTACGGATTATTATTGTTGCCTCACCACTGTTTCAAGGAGTCTAGGTGTTCAAAATCGTTGAATGAGGGTTTTCTATAGGGCAGGTTACTCAAGAGCTTTCTTTTGGACTCTTGATTGTGATAGGTTAGCAAGGGATTGGAGATGGAAGTAGCCAACAGGATGTTTGGTTGAGGTGGAATGTAGAGTAACCATAACACCATGGAAGATGGTTTTGAGGCAAACTGAGTTGTATCTTTCTATGCCGTCATGCTTTTTTCCAAAATTGATGTTTTGACTAATTTGTTCTCTAAAGGCATTTCTCTTTCTATCTCAGGGTCATGATGTGTCTGGTGAGAATGGACGGATTCATTGCTCCCTGAATATAAATACTGAAACTGGGCGCTTGTCTGCAAGGAGACCAAATTTACAGGTTTATTTCCTTCACTGACTTCTTGATTGTCATGCATTTTGATTCTCAAATATGCTATCAGCTACTGGTTTATCTTGTTTTAGGTGTCGACCACCCACAATTCTTTTCAAGTTTTGATATAAACCCTATAAATTTACTAAAATGTTGTAAATGTTCTCCTTTATCATTAATTGCGCTCATGCTGTATTACATGGCTCAAGTAAAGAGAAATCAAGTAATAACTTCAATGGTCATCGGTCATCACTTATGTTCCATTACTTTACTAGGATGATGTTTCAATGTTTATTTCTTTGGTTTACAGAATCAGCCTGCTCTTGAGAAAGATAGGTATAAAATTCGCCAAGCTTTTGTAGCTGCAGAG</genome_strand>
        <mrna_strand>AGAAGGCTCCCACCAAATTTCGTAAAATCCATCTACATAGGATTTGTGATCCTATCAACACTGAGATTTTCACTGCCAGTGGTTGGCCTTCTGTTAGTGGAGATGCTTTGAAGGCTCTCGCTGGCAAAGTTTCTGCAGACTTTGATATTTTTGATGAAGTGGATGGCAATGCTGAGGAAGTTCCTGAAACAAGCGTTGATGAAGCTTTAACTACAAATAACGAATCTCTCAGTCAAAACCCAGAAATTTCAGCTTATGGAACAGCCTACCACGCCTTTGGAGGTGGGCAGAAAGGAATTGAGTCTTGCCATGCCATTGCAGCCTTATGTGAAGTTTGCTCCATAGACTCTTTAATATCCAACTTTATCCTCCCCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGACGTGTCAGGTGAAAATGGACGGATTCATTGCTCCCTGAATATTAATACTGAAACTGGGCGCTTGTCTGCAAGGAGACCAAATTTACAG.............................................................................................................................................................................................................................................................................................................AACCAGCCTGCTCTGGAGAAAGATAGGTATAAAATTCGCCAAGCTTTTGTAGCTGCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468407" ref_strand="+" ref_description="SGN-E468407 [cSTB-3-H15]">
      <seq>gcttatggaacagcctaccacgcctttggaggtgggcagaaaggaattgaagcttgccatgccattgcagccttatgtgaagtttgctccatagactctttaatatccaactttatcctccccttgcagggtcatgatgtgtcaggtgaaaatggacggattcattgctccctgaatattaatactgaaactgggcgcttgtctgcaaggagaccaaatttacagaaccagcctgctctggagaaagataggtataaaattcgccaagcttttgtagctgcagaggggaattccttgattgtggctgactatgggcagttggaactaaggattcttgcacatcttgccaactgtaagagcatgttgggtgcattcaaagctggtggagacttccattcaaggactgctatgaatatgtatcctcacatccgtggagccgttgaaaaaggggaggtacttcttgagtggcatcctgaaccaggtgaagacaaaccaccagttcctctgctaaaggatgcttttggctctgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="66373" stop="68969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66673" g_stop="66801" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66802" i_stop="67696" i_length="895">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67697" g_stop="67792" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="225" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67793" i_stop="68093" i_length="301">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68094" g_stop="68186" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="318" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68187" i_stop="68265" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.416" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68266" g_stop="68460" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="513" r_length="195" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68461" i_stop="68649" i_length="189">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68650" g_stop="68669" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="533" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E468407" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66673" e_stop="66801"/>
          <exon e_start="67697" e_stop="67792"/>
          <exon e_start="68094" e_stop="68186"/>
          <exon e_start="68266" e_stop="68460"/>
          <exon e_start="68650" e_stop="68669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATGGAACAGCCTACCACGCCTTTGGAGGTGGGCAGAAAGGAATTGAGGCATGCCATGCCATTGCAGCCTTATGTGAAGTTTGCTCCATAGACTCTTTAATATCCAACTTTATCCTCCCCTTGCAGGCAAGTTGCTTTGTGTTTTGTATATAATCTTTCCTCATGGAACAACCTAAGAAGTTCGGGCAAGTTTTACTTGGCTGTCAAATTTGTTTGTTAATCTGCTACCAAATAATTGTTTTTACTTCTACTTTTATTTTATATGATTGTGGTATGTGATGAGTTAAAATGGAGAAGCGTGGTGAGTGAGGATTCATATAGGTGACCCCAACACTTGTTTAAGACTGATGCATGGTTGTTGTTTGTTGTTGCACTCAGCTCGCGCGGGGTCCTGGGATATTTAAAGGAGAGAAAGAAACTAATCCTCAACTGATTGTTTAAAATAATTTTTCTACTGACGTAATAGTATGTGAGAATGATATTTCCTTAAGTTACATGATGATACATTAAGAATAGTTAGTGTTTCCTCTCATTTATGAATAACTGAAATTATTTACCTCGTCTGTGGAAGCTTTTCCCAGTATTAGTAAAATTACTCATCAATTATGTATTTCTGAGAATTTTTTTTGCCTCGGATGCATTTTGTTTGAGCGACAAAAAACTACCCTGACCTAGTTATTCACGGCTCACTGTTTAATCAGGCCTTAGTACGGATTATTATTGTTGCCTCACCACTGTTTCAAGGAGTCTAGGTGTTCAAAATCGTTGAATGAGGGTTTTCTATAGGGCAGGTTACTCAAGAGCTTTCTTTTGGACTCTTGATTGTGATAGGTTAGCAAGGGATTGGAGATGGAAGTAGCCAACAGGATGTTTGGTTGAGGTGGAATGTAGAGTAACCATAACACCATGGAAGATGGTTTTGAGGCAAACTGAGTTGTATCTTTCTATGCCGTCATGCTTTTTTCCAAAATTGATGTTTTGACTAATTTGTTCTCTAAAGGCATTTCTCTTTCTATCTCAGGGTCATGATGTGTCTGGTGAGAATGGACGGATTCATTGCTCCCTGAATATAAATACTGAAACTGGGCGCTTGTCTGCAAGGAGACCAAATTTACAGGTTTATTTCCTTCACTGACTTCTTGATTGTCATGCATTTTGATTCTCAAATATGCTATCAGCTACTGGTTTATCTTGTTTTAGGTGTCGACCACCCACAATTCTTTTCAAGTTTTGATATAAACCCTATAAATTTACTAAAATGTTGTAAATGTTCTCCTTTATCATTAATTGCGCTCATGCTGTATTACATGGCTCAAGTAAAGAGAAATCAAGTAATAACTTCAATGGTCATCGGTCATCACTTATGTTCCATTACTTTACTAGGATGATGTTTCAATGTTTATTTCTTTGGTTTACAGAATCAGCCTGCTCTTGAGAAAGATAGGTATAAAATTCGCCAAGCTTTTGTAGCTGCAGAGGGGAATTCCTTGATTGTGGCTGACTATGGGCAGGTATCTAGCTGCTTACTGGTTATAATAGTTAGTATTTCTTGAATTGCTTGCAAAAAACTAACAATTTTCTCGAAATTAGTTGGAACTTAGGATTCTTGCACATCTTGCCAACTGTAAGAGCATGTTGGGTGCATTCGAAGCTGGTGGAGACTTCCATTCAAGGACTGCCATGAATATGTATCCTCACATCCGTGAAGCTGTTGAAAAGGGGCAGGTACTTCTTGAGTGGCATCCTCAACCTGGTGAAGACAAACCACCAGTTCCTCTGCTAAAGGTAACTGCAAACACTTATTGTGGATGGTGAAACTTTCATATTAATATGCAAGACAGGATAATTGTCGGATACAGTATTATACACCTGGTCAGCTACTTCCATGAGGGAAAATTCCACAAACAAGAATTTTAGTGCAAGAAGTTTGATTGAGTGGGATTTTAATGCAGTATAATGCAAATTTCTTTTCAGGATGCTTTTGGCTCTGAAAG</genome_strand>
        <mrna_strand>GCTTATGGAACAGCCTACCACGCCTTTGGAGGTGGGCAGAAAGGAATTGAAGCTTGCCATGCCATTGCAGCCTTATGTGAAGTTTGCTCCATAGACTCTTTAATATCCAACTTTATCCTCCCCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGATGTGTCAGGTGAAAATGGACGGATTCATTGCTCCCTGAATATTAATACTGAAACTGGGCGCTTGTCTGCAAGGAGACCAAATTTACAG.............................................................................................................................................................................................................................................................................................................AACCAGCCTGCTCTGGAGAAAGATAGGTATAAAATTCGCCAAGCTTTTGTAGCTGCAGAGGGGAATTCCTTGATTGTGGCTGACTATGGGCAG...............................................................................TTGGAACTAAGGATTCTTGCACATCTTGCCAACTGTAAGAGCATGTTGGGTGCATTCAAAGCTGGTGGAGACTTCCATTCAAGGACTGCTATGAATATGTATCCTCACATCCGTGGAGCCGTTGAAAAAGGGGAGGTACTTCTTGAGTGGCATCCTGAACCAGGTGAAGACAAACCACCAGTTCCTCTGCTAAAG.............................................................................................................................................................................................GATGCTTTTGGCTCTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603991" ref_strand="+" ref_description="SGN-E603991 [67181]">
      <seq>ctctttaatatccaactttatcctccccttgcagggtcatgacgtgtcaggtgaaaatggacggattcattgctccctgaatattaatactgaaactgggcgcttgtctgcaaggagaccaaatttacagaaccagcctgctctggagaaagataggtataaaattcgccaagcttttgtagctgcagaggggaattccttgattgtggctgactatgggcagttggaactaaggattcttgcacatcttgccaactgtaagagcatgttgggtgcattcaaagctggtggagacttccattcaaggactgctatgaatatgtatcctcacatccgtgaagccgttgaaaaagggcaggtacttcttgagtggcatcctgaaccaggtgaagacaaaccaccagttcctctgctaaaggatgcttttggctctgaaagaaggaaggcaaagatgctcaatttttcaattgcgtacggaaaaactacaattggactctcacgcgattggaaggtatctgtaaaggaagcaaaggaaacagttgaacgttggtatagtgatagaaaagaagtgtcagattggcaggaacaacgcagatttgaagcacgcgagtttggacgtgttcacacacttctaggacgagcacgctggtttccgtcagtaaaaaaatgcactggatccgtaaaaggttcacataagaacggggctgctatcaaatactcccagtgcagggaagtgcttgcagatgtcgctatgtgcgccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="66468" stop="69569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66768" g_stop="66801" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66802" i_stop="67696" i_length="895">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67697" g_stop="67792" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="130" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67793" i_stop="68093" i_length="301">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68094" g_stop="68186" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="223" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68187" i_stop="68265" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.416" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68266" g_stop="68460" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="418" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68461" i_stop="68649" i_length="189">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68650" g_stop="68742" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="511" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68743" i_stop="68870" i_length="128">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68871" g_stop="69083" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="729" r_length="218" r_score="0.901"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69084" i_stop="69235" i_length="152">
            <donor d_prob="0.997" d_score="0.73"/>
            <acceptor a_prob="0.495" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69236" g_stop="69269" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="764" r_length="35" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E603991" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66768" e_stop="66801"/>
          <exon e_start="67697" e_stop="67792"/>
          <exon e_start="68094" e_stop="68186"/>
          <exon e_start="68266" e_stop="68460"/>
          <exon e_start="68650" e_stop="68742"/>
          <exon e_start="68871" e_stop="69083"/>
          <exon e_start="69236" e_stop="69269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTAATATCCAACTTTATCCTCCCCTTGCAGGCAAGTTGCTTTGTGTTTTGTATATAATCTTTCCTCATGGAACAACCTAAGAAGTTCGGGCAAGTTTTACTTGGCTGTCAAATTTGTTTGTTAATCTGCTACCAAATAATTGTTTTTACTTCTACTTTTATTTTATATGATTGTGGTATGTGATGAGTTAAAATGGAGAAGCGTGGTGAGTGAGGATTCATATAGGTGACCCCAACACTTGTTTAAGACTGATGCATGGTTGTTGTTTGTTGTTGCACTCAGCTCGCGCGGGGTCCTGGGATATTTAAAGGAGAGAAAGAAACTAATCCTCAACTGATTGTTTAAAATAATTTTTCTACTGACGTAATAGTATGTGAGAATGATATTTCCTTAAGTTACATGATGATACATTAAGAATAGTTAGTGTTTCCTCTCATTTATGAATAACTGAAATTATTTACCTCGTCTGTGGAAGCTTTTCCCAGTATTAGTAAAATTACTCATCAATTATGTATTTCTGAGAATTTTTTTTGCCTCGGATGCATTTTGTTTGAGCGACAAAAAACTACCCTGACCTAGTTATTCACGGCTCACTGTTTAATCAGGCCTTAGTACGGATTATTATTGTTGCCTCACCACTGTTTCAAGGAGTCTAGGTGTTCAAAATCGTTGAATGAGGGTTTTCTATAGGGCAGGTTACTCAAGAGCTTTCTTTTGGACTCTTGATTGTGATAGGTTAGCAAGGGATTGGAGATGGAAGTAGCCAACAGGATGTTTGGTTGAGGTGGAATGTAGAGTAACCATAACACCATGGAAGATGGTTTTGAGGCAAACTGAGTTGTATCTTTCTATGCCGTCATGCTTTTTTCCAAAATTGATGTTTTGACTAATTTGTTCTCTAAAGGCATTTCTCTTTCTATCTCAGGGTCATGATGTGTCTGGTGAGAATGGACGGATTCATTGCTCCCTGAATATAAATACTGAAACTGGGCGCTTGTCTGCAAGGAGACCAAATTTACAGGTTTATTTCCTTCACTGACTTCTTGATTGTCATGCATTTTGATTCTCAAATATGCTATCAGCTACTGGTTTATCTTGTTTTAGGTGTCGACCACCCACAATTCTTTTCAAGTTTTGATATAAACCCTATAAATTTACTAAAATGTTGTAAATGTTCTCCTTTATCATTAATTGCGCTCATGCTGTATTACATGGCTCAAGTAAAGAGAAATCAAGTAATAACTTCAATGGTCATCGGTCATCACTTATGTTCCATTACTTTACTAGGATGATGTTTCAATGTTTATTTCTTTGGTTTACAGAATCAGCCTGCTCTTGAGAAAGATAGGTATAAAATTCGCCAAGCTTTTGTAGCTGCAGAGGGGAATTCCTTGATTGTGGCTGACTATGGGCAGGTATCTAGCTGCTTACTGGTTATAATAGTTAGTATTTCTTGAATTGCTTGCAAAAAACTAACAATTTTCTCGAAATTAGTTGGAACTTAGGATTCTTGCACATCTTGCCAACTGTAAGAGCATGTTGGGTGCATTCGAAGCTGGTGGAGACTTCCATTCAAGGACTGCCATGAATATGTATCCTCACATCCGTGAAGCTGTTGAAAAGGGGCAGGTACTTCTTGAGTGGCATCCTCAACCTGGTGAAGACAAACCACCAGTTCCTCTGCTAAAGGTAACTGCAAACACTTATTGTGGATGGTGAAACTTTCATATTAATATGCAAGACAGGATAATTGTCGGATACAGTATTATACACCTGGTCAGCTACTTCCATGAGGGAAAATTCCACAAACAAGAATTTTAGTGCAAGAAGTTTGATTGAGTGGGATTTTAATGCAGTATAATGCAAATTTCTTTTCAGGATGCTTTTGGCTCTGAAAGAAGGAAAGCAAAGATGCTCAATTTTTCAATTGCGTACGGAAAAACTACAATTGGACTCTCTCGCGATTGGAAGGTACTTCAGCATCTTTGAGACAATTTTTTATATTTTGTGAATCTGACAATATCTATTTAATTACCTTGATTTTTATAAATATAGTTTTTTAGGTCTGTATGAGCTGAATGAATACTATTCATACTCAGGTATCTGTAAAGGAAGCAAAGGAAACAGTTGAACGTTGGTATAGTGATAGAAAAGAAGTGTCAGATTGGCAAGAACAACGCAGATTTGAAGCACGTGAGTTCGGATGTGTTCACACACTTCTAGGACGAGCACGTTGGTTTCCGTCAGT-AAAAAATGCAACCGGATCCGTTAAAGG-TCACAT-AGAAC-GAGCTGCTATC-AATACT-CCAGTGCAGGTCCATCTTAATCCACCTTCACCCGTTTCCTTTTTTGTGTGTGTGTGTGTGTGTTGCCATTGTCTCTCCTCTTTCCCTTTTTTCTTTTTGACAAGTTGTTTGCGCCGGTTTGTCCCCATGTACGCCAAGCTGACTTCTGAAGTTTTTGACAGGGAAGTGC-TGCAGATGTCGCTATGTGCGCGATGT</genome_strand>
        <mrna_strand>CTCTTTAATATCCAACTTTATCCTCCCCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGACGTGTCAGGTGAAAATGGACGGATTCATTGCTCCCTGAATATTAATACTGAAACTGGGCGCTTGTCTGCAAGGAGACCAAATTTACAG.............................................................................................................................................................................................................................................................................................................AACCAGCCTGCTCTGGAGAAAGATAGGTATAAAATTCGCCAAGCTTTTGTAGCTGCAGAGGGGAATTCCTTGATTGTGGCTGACTATGGGCAG...............................................................................TTGGAACTAAGGATTCTTGCACATCTTGCCAACTGTAAGAGCATGTTGGGTGCATTCAAAGCTGGTGGAGACTTCCATTCAAGGACTGCTATGAATATGTATCCTCACATCCGTGAAGCCGTTGAAAAAGGGCAGGTACTTCTTGAGTGGCATCCTGAACCAGGTGAAGACAAACCACCAGTTCCTCTGCTAAAG.............................................................................................................................................................................................GATGCTTTTGGCTCTGAAAGAAGGAAGGCAAAGATGCTCAATTTTTCAATTGCGTACGGAAAAACTACAATTGGACTCTCACGCGATTGGAAG................................................................................................................................GTATCTGTAAAGGAAGCAAAGGAAACAGTTGAACGTTGGTATAGTGATAGAAAAGAAGTGTCAGATTGGCAGGAACAACGCAGATTTGAAGCACGCGAGTTTGGACGTGTTCACACACTTCTAGGACGAGCACGCTGGTTTCCGTCAGTAAAAAAATGC-ACTGGATCCGTAAAAGGTTCACATAAGAACGGGGCTGCTATCAAATACTCCCAGTGCAG........................................................................................................................................................GGAAGTGCTTGCAGATGTCGCTATGTGCGCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343049" ref_strand="+" ref_description="SGN-E343049 [cTOF-11-I12]">
      <seq>gcagttggaacttaggattcttgcacatcttgccaactgtaagagcatgttgggtgcattcgaagctggtggagacttccattcaaggactgccatgaatatgtatcctcacatccgtgaagctgttgaaaaggggcaggtacttcttgagtggcatcctcaacctggtgaagacaaaccaccagttcctctgctaaaggatgcttttggctctgaaagaaggaaagcaaagatgctcaatttttcaattgcgtacggaaaaactacaattggactctctcgcgattggaaggtatctgtaaaggaagcaaaggaaacagttgaacgttggtatagtgatagaaaagaagtgtcagattggcaagaacaacgcagatttgaagcacgtgagttcggatgtgttcacacacttctaggacgagcacgttggtttccgtcagtaaaaaatgcaaccggatccgttaaaggtcacatagaacgagctgctatcaatactccagtgcagggaagtgctgcagatgtcgctatgtgcgcgatgttagagatatcaaagaatgcacgactaaaggagcttggatggaaattgcttttacaggttcatgatgaangtattttggaaggaccagaagaatctgaggaagaagccatgggcatagtggttcactgcatgtccaatcctttttatgggaaaaatattctcagagttggcttatctgtcgatgctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="67964" stop="70174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68183" g_stop="68186" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68187" i_stop="68265" i_length="79">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.416" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68266" g_stop="68460" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="199" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68461" i_stop="68649" i_length="189">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68650" g_stop="68742" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="292" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68743" i_stop="68870" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68871" g_stop="69083" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="505" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69084" i_stop="69235" i_length="152">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.495" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69236" g_stop="69325" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="595" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69326" i_stop="69741" i_length="416">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69742" g_stop="69874" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="728" r_length="133" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E343049" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68183" e_stop="68186"/>
          <exon e_start="68266" e_stop="68460"/>
          <exon e_start="68650" e_stop="68742"/>
          <exon e_start="68871" e_stop="69083"/>
          <exon e_start="69236" e_stop="69325"/>
          <exon e_start="69742" e_stop="69874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGTATCTAGCTGCTTACTGGTTATAATAGTTAGTATTTCTTGAATTGCTTGCAAAAAACTAACAATTTTCTCGAAATTAGTTGGAACTTAGGATTCTTGCACATCTTGCCAACTGTAAGAGCATGTTGGGTGCATTCGAAGCTGGTGGAGACTTCCATTCAAGGACTGCCATGAATATGTATCCTCACATCCGTGAAGCTGTTGAAAAGGGGCAGGTACTTCTTGAGTGGCATCCTCAACCTGGTGAAGACAAACCACCAGTTCCTCTGCTAAAGGTAACTGCAAACACTTATTGTGGATGGTGAAACTTTCATATTAATATGCAAGACAGGATAATTGTCGGATACAGTATTATACACCTGGTCAGCTACTTCCATGAGGGAAAATTCCACAAACAAGAATTTTAGTGCAAGAAGTTTGATTGAGTGGGATTTTAATGCAGTATAATGCAAATTTCTTTTCAGGATGCTTTTGGCTCTGAAAGAAGGAAAGCAAAGATGCTCAATTTTTCAATTGCGTACGGAAAAACTACAATTGGACTCTCTCGCGATTGGAAGGTACTTCAGCATCTTTGAGACAATTTTTTATATTTTGTGAATCTGACAATATCTATTTAATTACCTTGATTTTTATAAATATAGTTTTTTAGGTCTGTATGAGCTGAATGAATACTATTCATACTCAGGTATCTGTAAAGGAAGCAAAGGAAACAGTTGAACGTTGGTATAGTGATAGAAAAGAAGTGTCAGATTGGCAAGAACAACGCAGATTTGAAGCACGTGAGTTCGGATGTGTTCACACACTTCTAGGACGAGCACGTTGGTTTCCGTCAGTAAAAAATGCAACCGGATCCGTTAAAGGTCACATAGAACGAGCTGCTATCAATACTCCAGTGCAGGTCCATCTTAATCCACCTTCACCCGTTTCCTTTTTTGTGTGTGTGTGTGTGTGTTGCCATTGTCTCTCCTCTTTCCCTTTTTTCTTTTTGACAAGTTGTTTGCGCCGGTTTGTCCCCATGTACGCCAAGCTGACTTCTGAAGTTTTTGACAGGGAAGTGCTGCAGATGTCGCTATGTGCGCGATGTTAGAGATATCAAAGAATGCACGACTAAAGGAGCTTGGATGGAAATTGCTTTTACAGGTTTACCTTACGTTGCCCTTTACTGGATTCAGCTCATTTAGGAAAAGAAAAAACAAATAATAACAGAAAAACTGTACTCTTCTATCATATATGTGTTGGTACATCTCTGGATATCTCTCTCTGTAGGCTTCACCTACGATTTTCGAGCTCAACCCTTAAGTTTAACCTCATGTTGAGTTTGGAGAGACACCTCAATTACTGTTAATTCCGGTGATAGGTGTTGGACTTTTACCATTTTGCTGTGCTTAACTGCAGACAAAAAGATTAAAGATTGTTTTTCATGCAATATAAAAGGACATGACACATTTAGAATTTTATGTTTGCATAGCTTAGAATTATTTGTTGTATGCGCCTTGCAGTACCAGTTGATTGTGTGCGTCATTTGACACTGTACTTGATTGTTCGTCTTGGAACAGGTTCATGATGAAGTTATTTTGGAAGGACCAGAAGAATCTGAGGAAGAAGCCATGGCAATAGTGGTTCACTGCATGTCCAATCCTTTTAATGGGAAAAATATTCTCAGAGTTGGCTTATCTGTCGATGCTAAAT</genome_strand>
        <mrna_strand>GCAG...............................................................................TTGGAACTTAGGATTCTTGCACATCTTGCCAACTGTAAGAGCATGTTGGGTGCATTCGAAGCTGGTGGAGACTTCCATTCAAGGACTGCCATGAATATGTATCCTCACATCCGTGAAGCTGTTGAAAAGGGGCAGGTACTTCTTGAGTGGCATCCTCAACCTGGTGAAGACAAACCACCAGTTCCTCTGCTAAAG.............................................................................................................................................................................................GATGCTTTTGGCTCTGAAAGAAGGAAAGCAAAGATGCTCAATTTTTCAATTGCGTACGGAAAAACTACAATTGGACTCTCTCGCGATTGGAAG................................................................................................................................GTATCTGTAAAGGAAGCAAAGGAAACAGTTGAACGTTGGTATAGTGATAGAAAAGAAGTGTCAGATTGGCAAGAACAACGCAGATTTGAAGCACGTGAGTTCGGATGTGTTCACACACTTCTAGGACGAGCACGTTGGTTTCCGTCAGTAAAAAATGCAACCGGATCCGTTAAAGGTCACATAGAACGAGCTGCTATCAATACTCCAGTGCAG........................................................................................................................................................GGAAGTGCTGCAGATGTCGCTATGTGCGCGATGTTAGAGATATCAAAGAATGCACGACTAAAGGAGCTTGGATGGAAATTGCTTTTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGATGAANGTATTTTGGAAGGACCAGAAGAATCTGAGGAAGAAGCCATGGGCATAGTGGTTCACTGCATGTCCAATCCTTTTTATGGGAAAAATATTCTCAGAGTTGGCTTATCTGTCGATGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213358" ref_strand="+" ref_description="SGN-E213358 [cLEC-71-G19]">
      <seq>aaaggtgtgggtagggcccaacaatttacaaattattgatgaatcataacacaatatgcttttctgcagagtgacacaaagggggcattgaatatttgctgtcaaacccctccattgacagaggggacttgctcatctttatcagggtttatctaaatatctggtagagcaacctcggaatatctggagagaattatggttcagacattagagaccataaggggtggtggaggttcgattaaagttggaacaactggtacgatcagtgccctcatgtcaagagaattagattcaaaaccatctgcttctacgacatctgtaccacgtaggtataggtctcctactgtttgttcatttgctgctggtgatgcaaccagtcctaaaagaacaaagccaagaacatcaatcgataaagctagcagcagctgggcatctgaagatcataaaaatgactccgagataattaggaaggcgaagcagtactacaattgtagaactcctcaacttccaatactagaatcagaaaacatttcagtagatggaactcctattaggaagaaacctgatagaaagggactggcgttagttgaaatcgtggacataaaatgtggtagttcgggaaaaacacgtgcaaaccttatgaaagatagtctgaaagagataagcttctcaaaactttctgagagccctgtttaggcatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="70625" stop="73248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70925" g_stop="71069" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71070" i_stop="72389" i_length="1320">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72390" g_stop="72948" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="704" r_length="559" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E213358" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70925" e_stop="71069"/>
          <exon e_start="72390" e_stop="72948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGTGGGTAGGGCCCAACAATTTACAAATTATTGATGAATCATAACACAATATGCTTTTCTGCAGAGTGACACAAAGGGGGCATTGAATATTTGCTGTCAAACCCCTCCATTGACAGAGGGGACTTGCTCATCTTTATCAGGTAAACCTTTTTTCAGGGCTCCAATGGCAGCTTTTCTTTTCTTTGTTGTTTCATTGGATTTCAGTCCAAGATAATATCTGCTTCATTGACTTGTCAAAGTTTCAATCTTTATGGTGTTTTCACATATTTTGACCTGCTTCTTGTGATTCTTGAGTATTAGTTATATGGGATATATGGATCTTATTGCCCTTGTCAAGTTGTTGCATTGATTGAAAACTTGGAGGACTTTTTATGTTTAGGAGGATTCAACTTGTTTTTGCATTTTCAAGAATTTGTTTAGTGAGTGTCAAGACAGTTAGGCTTTTTAGTTTTCCCTTTGTGATGTTGGGTTTGATTAGGTAATTTATCCTAGAATTCCTCCGTCTTTAACTAGAGGTCTTTGCTATGTTGACTTGCCAAAGTTTCAATCTTTGTGGTGTTTTCAAATTTTCAACTTCTTTTTGTGATTCCTGAGTCTATGAAACTTGTCAAGTTGATGCTTAGATTGAAAACTTGGAGGACTTTTTTCTGTTTTAGGAGGATAAAAGAATTCCTAATTTCAAGGTTCATTTTGCATTTTCAAGAATTTGTCAAGGGATGGTTGGTCAGGAGAAAGAACTCTTTCTGTTAAGCATGATAGTTCTTTGTTTTCCCTTTGTGATGTTGGGTTTGATTAACATGTTTGATTTTCCATCCAAGGGTTGTGGTGGAATGGGAAGGATCCCTCCACCCTTAAGCAAAAGTTTCGGGTTCAAGTCCTAGGTATGGAAAAAGTCTTGCTAGGGGATGTTTCCTCTTTAAAGGGGCCTTATGCAGCGAGAATCCAGATTAGTCGGACCGAACATGAGTACCTGACACCGGGTGGAAAACTGAAAAAATGTTTCATGTTCCATCTTTTAGACATGTCTAGTCTGTTTCAATCATAAGAATCAGTATAACTGGTGTAGATGCCCCTTAACAAAAAATCCAGTATGACTCCCTTTGGCTTTTGATCTTTTATAATCTAATAGAATATTTACTGGAATATGTCAACCAGTGAGCTTTATTTTCTCTTATTTATGGTTTTCAGGTCCTTATTATGCAGCTTTCTAAAATTATTGTGATTTCTCTTCGAATGACTTTACTTCTAGGTTCCTCGTCACGATTATAGATATTTCTGTGTTCGTTCCTGATAAATTTAGGAAAGTGGCGTTTATGTGACTGTTCTCTGAGCTCTTTTGCTGTGCTGTTTCTTAATTGACCAGATTTTTAGTCCATATATATAGGTTCATGTCAACTATGATTGTATGAAGAGTTAGATTCACAGTCGGACTTATGCACGTATTGGTTGTTATTTCACAGGGTTTATCTAAATATCTGGTAGAGCAACCTCGGAATATCTGGAGAGAATTATGGTTCAGACATTAGAGACCATAAGGGGTGGTGGAGGTTCGATTAAAGTTGGAACAACTGGTACGATCAGTGCCCTCATGTCAAGAGAATTAGATTCAAAACCATCTGCTTCTACGACATCTGTACCACGTAGGTATAGGTCTCCTACTGTTTGTTCATTTGCTGCTGGTGATGCAACCAGTCCTAAAAGAACAAAGCCAAGAACATCAATCGATAAAGCTAGCAGCAGCTGGGCATCTGAAGATCATAAAAATGACTCCGAGATAATTAGGAAGGCGAAGCAGTACTACAATTGTAGAACTCCTCAACTTCCAATACTAGAATCAGAAAACATTTCAGTAGATGGAACTCCTATTAGGAAGAAACCTGATAGAAAGGGACTGGCGTTAGTTGAAATCGTGGACATAAAATGTGGTAGTTCGGGAAAAACACGTGCAAACCTTATGAAGAATAGTCTGAAGAAGATAAGCTTCTCAAAACTTTCTGAGAGCCCTGTTTAGGCATGTGA</genome_strand>
        <mrna_strand>AAAGGTGTGGGTAGGGCCCAACAATTTACAAATTATTGATGAATCATAACACAATATGCTTTTCTGCAGAGTGACACAAAGGGGGCATTGAATATTTGCTGTCAAACCCCTCCATTGACAGAGGGGACTTGCTCATCTTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTATCTAAATATCTGGTAGAGCAACCTCGGAATATCTGGAGAGAATTATGGTTCAGACATTAGAGACCATAAGGGGTGGTGGAGGTTCGATTAAAGTTGGAACAACTGGTACGATCAGTGCCCTCATGTCAAGAGAATTAGATTCAAAACCATCTGCTTCTACGACATCTGTACCACGTAGGTATAGGTCTCCTACTGTTTGTTCATTTGCTGCTGGTGATGCAACCAGTCCTAAAAGAACAAAGCCAAGAACATCAATCGATAAAGCTAGCAGCAGCTGGGCATCTGAAGATCATAAAAATGACTCCGAGATAATTAGGAAGGCGAAGCAGTACTACAATTGTAGAACTCCTCAACTTCCAATACTAGAATCAGAAAACATTTCAGTAGATGGAACTCCTATTAGGAAGAAACCTGATAGAAAGGGACTGGCGTTAGTTGAAATCGTGGACATAAAATGTGGTAGTTCGGGAAAAACACGTGCAAACCTTATGAAAGATAGTCTGAAAGAGATAAGCTTCTCAAAACTTTCTGAGAGCCCTGTTTAGGCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240287" ref_strand="+" ref_description="SGN-E240287 [cLED-25-N2]">
      <seq>atctttatcagggtttatctaaatatctggtagagcaacctcggaatatctggagagaattatggttcagacattagagaccataaggggtggtggaggttcgattaaagttggaacaactggtacgatcagtgccctcatgtcaagagaattagattcaaaaccatctgcttctacgacatctgtaccacgtaggtataggtctcctactgtttgttcatttgctgctggtgatgcaaccagtcctaaaagaacaaagccaagaacatcaatcgataaagctagcagcagctgggcatctgaagatcataaaaatgactccgagataattaggaaggcgaagcagtactacaattgtagaactcctcaacttccaatactagaatcagaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="72078" stop="73073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72379" g_stop="72773" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E240287" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72379" e_stop="72773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTCACAGGGTTTATCTAAATATCTGGTAGAGCAACCTCGGAATATCTGGAGAGAATTATGGTTCAGACATTAGAGACCATAAGGGGTGGTGGAGGTTCGATTAAAGTTGGAACAACTGGTACGATCAGTGCCCTCATGTCAAGAGAATTAGATTCAAAACCATCTGCTTCTACGACATCTGTACCACGTAGGTATAGGTCTCCTACTGTTTGTTCATTTGCTGCTGGTGATGCAACCAGTCCTAAAAGAACAAAGCCAAGAACATCAATCGATAAAGCTAGCAGCAGCTGGGCATCTGAAGATCATAAAAATGACTCCGAGATAATTAGGAAGGCGAAGCAGTACTACAATTGTAGAACTCCTCAACTTCCAATACTAGAATCAGAAAACA</genome_strand>
        <mrna_strand>ATCTTTATCAGGGTTTATCTAAATATCTGGTAGAGCAACCTCGGAATATCTGGAGAGAATTATGGTTCAGACATTAGAGACCATAAGGGGTGGTGGAGGTTCGATTAAAGTTGGAACAACTGGTACGATCAGTGCCCTCATGTCAAGAGAATTAGATTCAAAACCATCTGCTTCTACGACATCTGTACCACGTAGGTATAGGTCTCCTACTGTTTGTTCATTTGCTGCTGGTGATGCAACCAGTCCTAAAAGAACAAAGCCAAGAACATCAATCGATAAAGCTAGCAGCAGCTGGGCATCTGAAGATCATAAAAATGACTCCGAGATAATTAGGAAGGCGAAGCAGTACTACAATTGTAGAACTCCTCAACTTCCAATACTAGAATCAGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203204" ref_strand="-" ref_description="SGN-E203204 [cLEB-3-L20](-)">
      <seq>tttttttttttttttttttttgcagttaaaagttgagcaactttattaacaacacatgaataaggtgattgccaggctgctcaatttttcattacattactttccagttgatcacattgagaagatatgtcaaagaaatcgcgcaaaaaaatacatgaacctaaccaaaatgaccgactctcatgtcaggcaggatgatatctcttcaaacattacacaggccataacagcttacgctttatagttgctgagaagatgactgctaaagtttctacagctgaaataggcagctgaggcacaattgaacgccttgtcttgcaaggaatcgataacttcagtaacctggaaaataggccatcaagataatctgtgtagcaacctttggcaacttgcagatgtgtcttcagctagcagttagacgagacaaaaggtttggattgtttcgttggtaataaaacaaataaaagaatgggagcagtaggctcataaccagcatctgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="82965" stop="72709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74119" g_stop="74095" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.760"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74094" i_stop="73486" i_length="609">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.258" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73485" g_stop="73009" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="502" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E203204" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203204" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74119" e_stop="74095"/>
          <exon e_start="73485" e_stop="73009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTGGTTGTATCAAGAACAAGAGTTAGATATTTTTAAAAAAAGGAAATTACAGTCGTTATTCTTTGATAACCTCCACTTCTAGATGAACTCGATCCAAAAATCAAATCTCATGCTTTCGCAAGCCAGAGTTAAATTTTTAGTTGTTTCCAAAATGAATTATCAAGGTCTTATTTTATAAAAATATTTTAATATAAGCATATTAAATGATGGTAGGCTTCTATTTGAAATTATGATAAGCTCCAAGAAAATTGTATATATAGTAAGATATAAAATAAACCAAGCAATTAGATATCAACAAATCAAAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTTTGATATGCAATTCACTGAGCTTCCAAAACCACATTTTTTTTCGATCTGAAAATAATTTGTCATTCTTTTTGAGACGTGTATGAAAAACTGACAGTAGAGTGAAACAGTTTTTTTTTCATCATCGGGCGGGAGAGCCGAGAATAATAATGTGTTATTCTTTTTGAGACCGTGTTGTTAGGTGGCATAGTATGAAAAACTGTGACAGTAGAGTAAAACAGTTGTCAGTGTTGAAATGAAGTTAACTGAATGCAAATGCAGTTAAAAGTTGAGCAACTTTATTAACAACACATGAATAAGGTGATTGCCAGGCTGCTCAATTTTTCATTACATTACTTTCCAGTTGATCACATTGAGAAGATATGTCAAAGAAATCGCGCAAAAAAATACATGAACCTAACCAAAATGACCGACTCTCATGTCAGGCAGGATGATATCTCTTCAAACATTACACAGGCCATAACAGCTTACGCTTTATAGTTGCTGAGAAGATGACTGCTAAAGTTTCTACAGCTGAAATAGGCAGCTGAGGCACAATTGAACGCCTTGTCTTGCAAGGAATCGATAACTTCAGTAACCTGGAAAATAGGCCATCAAGATAATCTGTGTAGCAACCTTTGGCAACTTGCAGATGTGTCTTCAGCTAGCAGTTAGACGAGACAAAAGGTTTGGATTGTTTCGTTGGTAATAAAACAAATAAAAGAATGGGAGCAGTAGGCTCATAACCAGCATCTGTTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAGTTGAGCAACTTTATTAACAACACATGAATAAGGTGATTGCCAGGCTGCTCAATTTTTCATTACATTACTTTCCAGTTGATCACATTGAGAAGATATGTCAAAGAAATCGCGCAAAAAAATACATGAACCTAACCAAAATGACCGACTCTCATGTCAGGCAGGATGATATCTCTTCAAACATTACACAGGCCATAACAGCTTACGCTTTATAGTTGCTGAGAAGATGACTGCTAAAGTTTCTACAGCTGAAATAGGCAGCTGAGGCACAATTGAACGCCTTGTCTTGCAAGGAATCGATAACTTCAGTAACCTGGAAAATAGGCCATCAAGATAATCTGTGTAGCAACCTTTGGCAACTTGCAGATGTGTCTTCAGCTAGCAGTTAGACGAGACAAAAGGTTTGGATTGTTTCGTTGGTAATAAAACAAATAAAAGAATGGGAGCAGTAGGCTCATAACCAGCATCTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698351" ref_strand="+" ref_description="SGN-E698351 [FA06AB06]">
      <seq>ccgattgaataagctatatatatcttttttttaaaatcaaaaagaagagaaaatctacagtgaacccttatataaaagcttccaatttgcaccctagagtgaaaaagattgcagcttttgcatccaaatagtgaaaattgaggtatatttgaagtggggtttgagtagaaaaggataaagagagatttatcaggcagcaaaggctttgccgccggtgaaagaatttcgtaaaacgaatagctaagcagttatcagaactctccacttgaagtttgctgcttcccgagctactttttttattgatactcagaaagacatcatggctgtttgtggatcaaggactcatattgggcatttcgttggaaatatgactgctaggcgcctgcagtgtagtttgtcagtaaagggttgtactgtttcttacaacaaaagaggcttacaaaatgttagtaaagctaacatcaatttgggaaacaaaggacgggccaccaacttcatgctttaccaatatttgacgactaatgttgcaaagaggaggactaatctcaatcccacacaaaggctttggattggaaggttttcgcaatctatcccacgaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="73877" stop="76569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74171" g_stop="74424" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76269" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="603" r_length="348" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E698351" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74171" e_stop="74424"/>
          <exon e_start="75923" e_stop="76269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAATAAGTTATATATAT-TTTTTTTTAAAATCAAAAAGAAGAGAAAATCTACAGTGAACCCTTATATAAAAGCTTCCAATTTGCACCCTAGAGTGAAAAAGATTGCAGCTTTTGCATCCAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAAGTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAAAGAGGAGGACTAACCTCAAT-CCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTT</genome_strand>
        <mrna_strand>CCGATTGAATAAGCTATATATATCTTTTTTTTAAAATCAAAAAGAAGAGAAAATCTACAGTGAACCCTTATATAAAAGCTTCCAATTTGCACCCTAGAGTGAAAAAGATTGCAGCTTTTGCATCCAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCCACTTGAAGTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGATCAAGGACTCATATTGGGCATTTCGTTGGAAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGGCCACCAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAAAGAGGAGGACTAATCTCAATCCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATCTATCCCACGAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317168" ref_strand="+" ref_description="SGN-E317168 [cTOA-28-C5]">
      <seq>ttatataaaagcttccaatttgcaccctagagtgaaaaagattgcagcttttgcatccaaatagtgaaaattgaggtatatttgaagtggggtttgagtagaaaaggataaagagagatttatcaggcagcaaaggctttgccgccggtgaaagaatttcgtaaaacgaatagctaagcagttatcagaactctccacttgaagtttgctgcttcccgagctactttttttattgatactcagaaagacatcatggctgtttgtggttcaaggactcatattgggcatttcgttggcaatatgactgctaggcgcctgcagtgtagtttgtcagtaaagggttgtactgtttcttacaacaaaagaggcttacaaaatgttagtaaagctaacatcaatttgggaaacaaaggacggcccaacaacttcatgctttaccaatatttgacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="73937" stop="76486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74237" g_stop="74424" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76186" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="452" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E317168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74237" e_stop="74424"/>
          <exon e_start="75923" e_stop="76186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATAAAAGCTTCCAATTTGCACCCTAGAGTGAAAAAGATTGCAGCTTTTGCATCCAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAAGTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGAC</genome_strand>
        <mrna_strand>TTATATAAAAGCTTCCAATTTGCACCCTAGAGTGAAAAAGATTGCAGCTTTTGCATCCAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCCACTTGAAGTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418532" ref_strand="+" ref_description="SGN-E418532 [STM-27-D6]">
      <seq>cttttgcatccgaacagtgaaaattgaggcatatttgaagtggggtttcgatagaaaaggataaagatagtttctcaggcagcaaagactttgccgccggtgaaagaatttcataagctaaacagttattagaactctgcacttgaaggtttgctgcttcccgagttacttttgttattgatactcagaaaggcataatggctgtttgtggttcaaggactcatattggccatttcgttggcaatatgactgctaggcgcctgcagtgtagtttgtcagtcaagagctgtactgtttcttacaacaaaagaggctttcaaaatgttagtaaagctaacatcagtttcggaaacaaaggacggcccaataacttcatgctttaccaatatttcacgactaatgtggcaaagaggaggactaacctcaaccaacacaaaggctttggattggaaggttttcacaatttatcccacgaatgtttcttttctggaactgcctttgcttctaatgtgtcttctgataattctaagggcacagaacaagttgtagatgttgttaattcttctgaagcaaagatctccttgcagctaaactcgggatctttttacctacctcatcctgctaaagcaaaaactggtggagaggatgctcattttatttgtacccttacaccagcaatcggtgtanctgatggtgtttgtggatgggctgatcttggtattgatgctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="73984" stop="76821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74284" g_stop="74424" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="0.78"/>
            <acceptor a_prob="0.911" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76521" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="732" r_length="600" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E418532" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74284" e_stop="74424"/>
          <exon e_start="75923" e_stop="76521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCATCCAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAA-GTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAAAGAGGAGGACTAACCTCAATCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTATTCTGGAACTGCCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTTGACGTTGTTAATTCTTCTGAAGCACAGATCCCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCCTTACGCCAGCAATCGGTGTAGCTGATGGTGTTGGTGGATGGGCTGATCTTGGTATTGATGCTGGAC</genome_strand>
        <mrna_strand>CTTTTGCATCCGAACAGTGAAAATTGAGGCATATTTGAAGTGGGGTTTCGATAGAAAAGGATAAAGATAG-TTTCTCAGGCAGCAAAGACTTTGCCGCCGGTGAAAGAATTTC-----A--TA-AGCTAAACAGTTATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTGCACTTGAAGGTTTGCTGCTTCCCGAGTTACTTTTGTTATTGATACTCAGAAAGGCATAATGGCTGTTTGTGGTTCAAGGACTCATATTGGCCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTCAAGAGCTGTACTGTTTCTTACAACAAAAGAGGCTTTCAAAATGTTAGTAAAGCTAACATCAGTTTCGGAAACAAAGGACGGCCCAATAACTTCATGCTTTACCAATATTTCACGACTAATGTGGCAAAGAGGAGGACTAACCTCAACCAACACAAAGGCTTTGGATTGGAAGGTTTTCACAATTTATCCCACGAATGTTTCTTTTCTGGAACTGCCTTTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACAGAACAAGTTGTAGATGTTGTTAATTCTTCTGAAGCAAAGATCTCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCCTTACACCAGCAATCGGTGTANCTGATGGTGTTTGTGGATGGGCTGATCTTGGTATTGATGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418385" ref_strand="+" ref_description="SGN-E418385 [STM-27-K12]">
      <seq>cttttgcatccaaacagtgaaaattgaggcatatttgaagtggggtttggatagaaaaggataaagatagtttctcaggcagcaaagactttgccgccggtgaaagaatttcataaaacgataagctaaacagttatcagaactctgcacttgaaggtttgctgcttcccgagttacttttgttattgatactcagaaaggcataatggctgtttgtggttcaaggactcatattggccatttcgttggcaatatgactgctaggcgcctgcagtgtagtttgtcagtaaagagttgtactgtttcttacaacaaaagaggctttcaaaatgttagtaaagctaacatcagtttgggaaacaaaggacggcccaataacttcatgctttaccaatatttcacaactaatgttgcaaagaggaggactaacctcaacccacacaaaggctttggattggaaggttttcgcaatttatcccacgaatgtttcttttctggaactgtctctgcttctaatgtgtcttctgataattctaagggcacggaacaagttgtagatgttgttaattcttctgaagcaaaaatctccttgcagctatactcgggatcttattacctacctcatcctgctaaagcaaaaactggtggagaggatgctcattttatttgtacccttacaccagncatcggtgtanctgatggtgttggtggatgggctgatcttggtattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="73984" stop="76815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74284" g_stop="74424" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76515" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="734" r_length="594" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E418385" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74284" e_stop="74424"/>
          <exon e_start="75923" e_stop="76515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCATCCAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAA-GTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAAAGAGGAGGACTAACCTCAATCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTATTCTGGAACTGCCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTTGACGTTGTTAATTCTTCTGAAGCACAGATCCCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCCTTACGCCAGCAATCGGTGTAGCTGATGGTGTTGGTGGATGGGCTGATCTTGGTATTGATG</genome_strand>
        <mrna_strand>CTTTTGCATCCAAACAGTGAAAATTGAGGCATATTTGAAGTGGGGTTTGGATAGAAAAGGATAAAGATAG-TTTCTCAGGCAGCAAAGACTTTGCCGCCGGTGAAAGAATTTCATAAAACGATAAGCTAAACAGTTATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTGCACTTGAAGGTTTGCTGCTTCCCGAGTTACTTTTGTTATTGATACTCAGAAAGGCATAATGGCTGTTTGTGGTTCAAGGACTCATATTGGCCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGAGTTGTACTGTTTCTTACAACAAAAGAGGCTTTCAAAATGTTAGTAAAGCTAACATCAGTTTGGGAAACAAAGGACGGCCCAATAACTTCATGCTTTACCAATATTTCACAACTAATGTTGCAAAGAGGAGGACTAACCTCAACCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTTTTCTGGAACTGTCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTAGATGTTGTTAATTCTTCTGAAGCAAAAATCTCCTTGCAGCTATACTCGGGATCTTATTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCCTTACACCAGNCATCGGTGTANCTGATGGTGTTGGTGGATGGGCTGATCTTGGTATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450745" ref_strand="+" ref_description="SGN-E450745 [cSTS-10-E20]">
      <seq>cttttgcatccaaaccgtgaaaattgaggcatatttgaagtggggtttggatagaaaaggataaagatagtttctcaggcagcaaagacctttgccgccggtgaaagaatttcataaaacgataagctaaacagttatcagaactctgcacttgaaggtttgctgcttcccgagttacttttgttattgatactcagaaaggcataatggctgtttgtggttcaaggactcatattggccatttcgttggcaatatgactgctaggcgcctgcagtgtagtttgtcagtaaagagttgtactgtttcttacaacaaaagaggctttcaaaatgttagtaaagctaacatcagtttgggaaacaaaggacggcccaataacttcatgctttaccaatatttcacaactaatgttgcaaagaggaggactaacctcaacccacacaaaggctttggattggaaggttttcgcaatttatcccacgaatgtttcttttctggaactgtctctgcttctaatgtgtcttctgataattctaagggcacggaacaagttgtagatgttgttaattcttctgaagcaaaaatctccttgcagctatactcgggatcttattacctacctcatcctgctaaagcaaaactggtggagaggatgctcattttatttgtaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="73984" stop="76755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74284" g_stop="74424" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76455" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="674" r_length="533" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E450745" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74284" e_stop="74424"/>
          <exon e_start="75923" e_stop="76455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCATCCAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGC-TTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAA-GTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAAAGAGGAGGACTAACCTCAATCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTATTCTGGAACTGCCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTTGACGTTGTTAATTCTTCTGAAGCACAGATCCCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCC</genome_strand>
        <mrna_strand>CTTTTGCATCCAAACCGTGAAAATTGAGGCATATTTGAAGTGGGGTTTGGATAGAAAAGGATAAAGATAG-TTTCTCAGGCAGCAAAGACCTTTGCCGCCGGTGAAAGAATTTCATAAAACGATAAGCTAAACAGTTATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTGCACTTGAAGGTTTGCTGCTTCCCGAGTTACTTTTGTTATTGATACTCAGAAAGGCATAATGGCTGTTTGTGGTTCAAGGACTCATATTGGCCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGAGTTGTACTGTTTCTTACAACAAAAGAGGCTTTCAAAATGTTAGTAAAGCTAACATCAGTTTGGGAAACAAAGGACGGCCCAATAACTTCATGCTTTACCAATATTTCACAACTAATGTTGCAAAGAGGAGGACTAACCTCAACCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTTTTCTGGAACTGTCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTAGATGTTGTTAATTCTTCTGAAGCAAAAATCTCCTTGCAGCTATACTCGGGATCTTATTACCTACCTCATCCTGCTAAAGC-AAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441458" ref_strand="+" ref_description="SGN-E441458 [cSTA-30-O12]">
      <seq>cttttgcatccaaaccagtgaaaattgaggcatatttgaagtggggtttggatagaaaaggataaagatagtttctcaggcagcaaagactttgccgccggtgaaagaatttcataaaacgataagctaaacagttatcagaactctgcacttgaaggtttgctgcttcccgagttacttttgttattgatactcagaaaggcataatggctgtttgtggttcaaggactcatattggccatttcgttggcaatatgactgctaggcgcctgcagtgtagtttgtcagtaaagagttgtactgtttcttacaacaaaagaggctttcaaaatgttagtaaagctaacatcagtttgggaaacaaaggacggcccaataacttcatgctttaccaatatttcacaactaatgttgcaaagaggaggactaacctcaacccacacaaaggctttggattggaaggttttcgcaatttatcccacgaatgtttcttttctggaactgtctctgcttctaatgtgtcttctgataattctaagggcacggaacaagttgtagatgttgttaattcttctgaagcaaaaatctccttgcagctatactcgggatcttattacctacctcatcctgctaaagcaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="73984" stop="76724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74284" g_stop="74424" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76424" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="644" r_length="503" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E441458" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74284" e_stop="74424"/>
          <exon e_start="75923" e_stop="76424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCATCCAAA-TAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAA-GTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAAAGAGGAGGACTAACCTCAATCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTATTCTGGAACTGCCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTTGACGTTGTTAATTCTTCTGAAGCACAGATCCCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCTAAAGCAAAAACT</genome_strand>
        <mrna_strand>CTTTTGCATCCAAACCAGTGAAAATTGAGGCATATTTGAAGTGGGGTTTGGATAGAAAAGGATAAAGATAG-TTTCTCAGGCAGCAAAGACTTTGCCGCCGGTGAAAGAATTTCATAAAACGATAAGCTAAACAGTTATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTGCACTTGAAGGTTTGCTGCTTCCCGAGTTACTTTTGTTATTGATACTCAGAAAGGCATAATGGCTGTTTGTGGTTCAAGGACTCATATTGGCCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGAGTTGTACTGTTTCTTACAACAAAAGAGGCTTTCAAAATGTTAGTAAAGCTAACATCAGTTTGGGAAACAAAGGACGGCCCAATAACTTCATGCTTTACCAATATTTCACAACTAATGTTGCAAAGAGGAGGACTAACCTCAACCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTTTTCTGGAACTGTCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTAGATGTTGTTAATTCTTCTGAAGCAAAAATCTCCTTGCAGCTATACTCGGGATCTTATTACCTACCTCATCCTGCTAAAGCAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442212" ref_strand="+" ref_description="SGN-E442212 [cSTA-32-G24]">
      <seq>cttttgcatccgaacagtgaaaattgaggcatatttgaagtggggtttcgatagaaaaggataaagatagtttctcaggcagcaaagactttgccgccggtgaaagaatttcataagctaaacagttattagaactctgcacttgaaggtttgctgcttcccgagttacttttgttattgatactcagaaaggcataatggctgtttgtggttcaaggactcatattggccatttcgttggcaatatgactgctaggcgcctgcagtgtagtttgtcagtcaagagctgtactgtttcttacaacaaaagaggctttcaaaatgttagtaaagctaacatcagtttcggaaacaaaggacggcccaataacttcatgctttaccaatatttcacgactaatgtggcaaagaggaggactaacctcaaccaacacaaaggctttggattggaaggttttcacaatttatcccacgaatgtttcttttctggaactgcctttgcttctaatgtgtcttctgataattctaagggcacagaacaagttgtagatgttgttaattcttctgaagcaaagatctccttgcagctaaactcgggatctttttacctacctcatcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="73984" stop="76712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74284" g_stop="74424" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="0.78"/>
            <acceptor a_prob="0.911" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76412" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="623" r_length="491" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E442212" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74284" e_stop="74424"/>
          <exon e_start="75923" e_stop="76412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCATCCAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAA-GTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAAAGAGGAGGACTAACCTCAATCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTATTCTGGAACTGCCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTTGACGTTGTTAATTCTTCTGAAGCACAGATCCCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCT</genome_strand>
        <mrna_strand>CTTTTGCATCCGAACAGTGAAAATTGAGGCATATTTGAAGTGGGGTTTCGATAGAAAAGGATAAAGATAG-TTTCTCAGGCAGCAAAGACTTTGCCGCCGGTGAAAGAATTTC-----A--TA-AGCTAAACAGTTATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTGCACTTGAAGGTTTGCTGCTTCCCGAGTTACTTTTGTTATTGATACTCAGAAAGGCATAATGGCTGTTTGTGGTTCAAGGACTCATATTGGCCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTCAAGAGCTGTACTGTTTCTTACAACAAAAGAGGCTTTCAAAATGTTAGTAAAGCTAACATCAGTTTCGGAAACAAAGGACGGCCCAATAACTTCATGCTTTACCAATATTTCACGACTAATGTGGCAAAGAGGAGGACTAACCTCAACCAACACAAAGGCTTTGGATTGGAAGGTTTTCACAATTTATCCCACGAATGTTTCTTTTCTGGAACTGCCTTTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACAGAACAAGTTGTAGATGTTGTTAATTCTTCTGAAGCAAAGATCTCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302485" ref_strand="+" ref_description="SGN-E302485 [cLEW-27-N2]">
      <seq>ttgcatccaaatagtgaaaattgaggtatatttgaagtggggtttgagtagaaaaggataaagagagatttatcaggcagcaaaggctttgccgccggtgaaagaatttcgtaaaacgaatagctaagcagttatcagaactctccacttgaagtttgctgcttcccgagctactttttttattgatactcagaaagacatcatggctgtttgtggttcaaggactcatattgggcatttcgttggcaatatgactgctaggcgcctgcagtgtagtttgtcagtaaagggttgtactgtttcttacaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="73987" stop="76396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74287" g_stop="74424" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76096" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="312" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E302485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74287" e_stop="74424"/>
          <exon e_start="75923" e_stop="76096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCCAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAAGTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAA</genome_strand>
        <mrna_strand>TTGCATCCAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCCACTTGAAGTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485911" ref_strand="+" ref_description="SGN-E485911 [cSTE-20-G9]">
      <seq>cgaacagtgaaaattgaggcatatttgaagtggggtttcgatagaaaaggataaagatagtttctcaggcagcaaagactttgccgccggtgaaagaatttcataagctaaacagttattagaactctgcacttgaaggtttgctgcttcccgagttacttttgttattgatactcagaaaggcataatggctgtttgtggttcaaggactcatattggccatttcgttggcaatatgactgctaggcgcctgcagtgtagtttgtcagtcaagagctgtactgtttcttacaacaaaagaggctttcaaaatgttagtaaagctaacatcagtttcggaaacaaaggacggcccaataacttcatgctttaccaatatttcacgactaatgtggcaaagaggaggactaacctcaaccaacacaaaggctttggattggaaggttttcacaatttatcccacgaatgtttcttttctggaactgcctttgcttctaatgtgtcttctgataattctaagggcacagaacaagttgtagatgttgttaattcttctgaagcaaagatctccttgcagctaaactcgggatctttttacctacctcatcctgctaaagcaaaaactggtggagaagatgctcattttatttgtacccttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="73994" stop="76759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74294" g_stop="74424" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="0.78"/>
            <acceptor a_prob="0.911" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76460" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="661" r_length="539" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E485911" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74294" e_stop="74424"/>
          <exon e_start="75923" e_stop="76460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAA-GTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAAAGAGGAGGACTAACCTCAATCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTATTCTGGAACTGCCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTTGACGTTGTTAATTCTTCTGAAGCACAGATCCCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCCTTACG</genome_strand>
        <mrna_strand>CGAACAGTGAAAATTGAGGCATATTTGAAGTGGGGTTTCGATAGAAAAGGATAAAGATAG-TTTCTCAGGCAGCAAAGACTTTGCCGCCGGTGAAAGAATTTC-----A-TAA--GCTAAACAGTTATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTGCACTTGAAGGTTTGCTGCTTCCCGAGTTACTTTTGTTATTGATACTCAGAAAGGCATAATGGCTGTTTGTGGTTCAAGGACTCATATTGGCCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTCAAGAGCTGTACTGTTTCTTACAACAAAAGAGGCTTTCAAAATGTTAGTAAAGCTAACATCAGTTTCGGAAACAAAGGACGGCCCAATAACTTCATGCTTTACCAATATTTCACGACTAATGTGGCAAAGAGGAGGACTAACCTCAACCAACACAAAGGCTTTGGATTGGAAGGTTTTCACAATTTATCCCACGAATGTTTCTTTTCTGGAACTGCCTTTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACAGAACAAGTTGTAGATGTTGTTAATTCTTCTGAAGCAAAGATCTCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAAGATGCTCATTTTATTTGTACCCTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471696" ref_strand="+" ref_description="SGN-E471696 [cSTB-24-N20]">
      <seq>aaaattgaggcatatttgaagtggggtttggatagaaaaggataaagatagtttctcaggcagcaaagactttgccgccggtgaaagaatttcataaaacgataagctaaacagttatcagaactctgcacttgaaggtttgctgcttcccgagttacttttgttattgatactcagaaaggcataatggctgtttgtggttcaaggactcatattggccatttcgttggcaatatgactgctaggcgcctgcagtgtagtttgtcagtaaagagttgtactgtttcttacaacaaaagaggctttcaaaatgttagtaaagctaacatcagtttgggaaacaaaggacggcccaataacttcatgctttaccaatatttcacaactaatgttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="74003" stop="76497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74303" g_stop="74424" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76197" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="397" r_length="276" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E471696" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74303" e_stop="74424"/>
          <exon e_start="75923" e_stop="76197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAA-GTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAA</genome_strand>
        <mrna_strand>AAAATTGAGGCATATTTGAAGTGGGGTTTGGATAGAAAAGGATAAAGATAG-TTTCTCAGGCAGCAAAGACTTTGCCGCCGGTGAAAGAATTTCATAAAACGATAAGCTAAACAGTTATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTGCACTTGAAGGTTTGCTGCTTCCCGAGTTACTTTTGTTATTGATACTCAGAAAGGCATAATGGCTGTTTGTGGTTCAAGGACTCATATTGGCCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGAGTTGTACTGTTTCTTACAACAAAAGAGGCTTTCAAAATGTTAGTAAAGCTAACATCAGTTTGGGAAACAAAGGACGGCCCAATAACTTCATGCTTTACCAATATTTCACAACTAATGTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469921" ref_strand="+" ref_description="SGN-E469921 [cSTB-15-J17]">
      <seq>ttgaagtggggtttggatagaaaaggataaagatagtttctcaggcagcaaagactttgccgccggtgaaagaatttcataaaacgataagctaaacagttatcagaactctgcacttgaaggtttgctgcttcccgagttacttttgttattgatactcagaaaggcataatggctgtttgtggttcaaggactcatattggccatttcgttggcaatatgactgctaggcgcctgcagtgtagtttgtcagtaaagagttgtactgtttcttacaacaaaagaggctttcaaaatgttagtaaagctaacatcagtttgggaaacaaaggacggcccaataacttcatgctttaccaatatttcacaactaatgttgcaaagaggaggactaacctcaacccacacaaaggctttggattggaaggttttcgcaatttatcccacgaatgtttcttttctggaactgtctctgcttctaatgtgtcttctgataattctaagggcacggaacaagttgtagatgttgttaattcttctgaagcaaaaatctccttgcagctatactcgggatcttattacctacctcatcctgctaaagcaaaaactggtggagaggatgctcattttatttgtacccttacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="74018" stop="76762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74318" g_stop="74424" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76462" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="647" r_length="541" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E469921" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74318" e_stop="74424"/>
          <exon e_start="75923" e_stop="76462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAA-GTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAAAGAGGAGGACTAACCTCAATCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTATTCTGGAACTGCCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTTGACGTTGTTAATTCTTCTGAAGCACAGATCCCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCCTTACGCC</genome_strand>
        <mrna_strand>TTGAAGTGGGGTTTGGATAGAAAAGGATAAAGATAG-TTTCTCAGGCAGCAAAGACTTTGCCGCCGGTGAAAGAATTTCATAAAACGATAAGCTAAACAGTTATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTGCACTTGAAGGTTTGCTGCTTCCCGAGTTACTTTTGTTATTGATACTCAGAAAGGCATAATGGCTGTTTGTGGTTCAAGGACTCATATTGGCCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGAGTTGTACTGTTTCTTACAACAAAAGAGGCTTTCAAAATGTTAGTAAAGCTAACATCAGTTTGGGAAACAAAGGACGGCCCAATAACTTCATGCTTTACCAATATTTCACAACTAATGTTGCAAAGAGGAGGACTAACCTCAACCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTTTTCTGGAACTGTCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTAGATGTTGTTAATTCTTCTGAAGCAAAAATCTCCTTGCAGCTATACTCGGGATCTTATTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCCTTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615856" ref_strand="+" ref_description="SGN-E615856 [65659]">
      <seq>gtttctcaggcagcaaagactttgccgccggtgaaagaatttcataaaacgattagctaaacagttatcagaactctgcacttgaaggtttgctgcttcccgagctacttttgttattgatactcagaaaggcataatggctgtttgtggttcaaggactcatattggccatttcgttggcaatatgactactaggcgcctgcagtgtagtttgtcagtaaagagttgtactgtttcttacaacaaaagaggctttcaaaatgttagtaaagctaacatcagtttgggaaacaaaggacggcccaataacttcatgctttaccaatatttcacgactaatgttgcaaagaggaggactaacctcaatccacacaaaggctttggattggaaggttttcgcaatttatcccacgaatgtttcttttctggaactgcctctgcttctaatgtgtcttctgataattctaagggcacggaacaagttgtggatgctgttaattcttctgaagcaaagatccccttgcagctaaactcgggatccttttacctacctcatcctgctaaagcaaaaactggtggagaggatgctcattttatttgtacccttacaccagcaatcgggtgtagctgatggtgtggtggatgggcagatcttggtaattgatgctggactatatgctccgtgaaattgatgtctcaacttcttttatctgcgaattcaagatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="74055" stop="76872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74354" g_stop="74424" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.911" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75923" g_stop="76572" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="729" r_length="658" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E615856" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74354" e_stop="74424"/>
          <exon e_start="75923" e_stop="76572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAGGTGAAGTTTAATGATTCCCTTTTTCTCTGTTTGTTTATTTGTTATGAATTTGCTTTGTGTATATTGTTATTGAATGAGGAAGACATTGTTGATAAAGATAGTGGAAAATCCCAATTCCCTCATTGTAACTCTTATATTGTTGTTGTAATTACTTACATGGTCTTTTCTTGAATTCCTTCCAGCATTTTGTTTTGTCTAGTCTGGTCTTATCTGTTAATTATATACTGTGCTGATTTGAGAAGAATAAGGGGGACTTTTAATTGGAGGGTGTGCTCTAGTGGTCGAGGAATGGGTCGGGAATCATGAGGTCTGATGTTCAAATCATAGCGGAGTTAAAAATACACATCTGTGGAAGTGAAGTGTTAAGCAGACCAACTGGTGCGTGGACCAAGAGCCTAAACAAAGATGGATATGACATTAGGACTAACTCAACCTCTAAAGCTAGCTAATGAAAGGAGGATCACCCAAATCCATATAAACAGACCCCTGGTTCATTACCCATTTGTTTCCCAACCAGTGTGAGACTCTAACCACTCTTAACTGTTTGAAATTGTAATTTTGAAAAGAACAAGTACAACAAGTATGAAAAGTTCTTTAAACTCCAAAGCGGAATCAATCAATTTATGGACAGAGTCAGATGATACTTTTACTGGTGGGAGGTGAGAGGTAGTCCTGGAGATAGTTGAGTTATGTGCAAGCTGACCTAGGTACCACGTTTATCAAAAAAGAAATAAGGGCGATATTCTCAAACCCCACTTTTGTTATGTGGTCAATTAATCTGGGCTTCAGGCATAGTTGATAGTATTAAGTTATTGGCGTGTGTGGGTGGGTCAACTTCACTACAGGCATGCGTAGTTGAGTTACTACATCATTTTGGCTTACCCCAGATAACAAAAGCTCAATTCTTTTGATTGTTTAACTTGTGATAGATATAGGTTGTACATTTTTCTTTTGATTTTTGTTTAAAAATTCCACATAGAGATTGAGAAGAAAAAACAATTGAAATTCTAAGTTCTCCTTCAGGCCCATTAAGGATTGATTACTGTCTCTGCCTCACTGTGTCACACTCTTTCGTTGGCTGATGACAGTTTTCTTGTTACCCTTGAGCTTATTGTTGGAATAGTTCCACTTTGGAAAGTTCAATTGCAACTTTTGGCTGCTAATAAGCTCCCGGGTATTTTGTATTCATGAATGTGTTTTTAGTTCTTAATTTGACTGAGTCAATTTTCTTGATATTCGTGTTTCGTATGACGTTTTCGTTTCAACTTCATAGGTTTTATTTGCCTGGCTTTACAACTTGCACTTTCTAGCCTGCATATGATAACGCAATCTCCTCAGTATAAATATTTGTTTATAAGATCAATTGAAGGGGAGATATAGGAGCTTGTGTTATGTGTGTCTTGCTTTGTCAGTTTGTTTTATCTACTATGTCCATTAAAAAGAAGAAAACGCAAGCTACTTATGTAACCTCATGTTGTTTCCTTCCATGGTTTTGCAGAACTCTCCACTTGAA-GTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAAAGAGGAGGACTAACCTCAATCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTATTCTGGAACTGCCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTTGACGTTGTTAATTCTTCTGAAGCACAGATCCCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCCTTACGCCAGCAATC-GGTGTAGCTGATGGTGTTGGTGGATGGGCTGATCTTGGT-ATTGATGCTGGACTATATGC-CCGTG-AATTGATGTCTC-AC-TC-TTTATCTGC-AATTCAAGATGAAC</genome_strand>
        <mrna_strand>GTTTCTCAGGCAGCAAAGACTTTGCCGCCGGTGAAAGAATTTCATAAAACGATTAGCTAAACAGTTATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTGCACTTGAAGGTTTGCTGCTTCCCGAGCTACTTTTGTTATTGATACTCAGAAAGGCATAATGGCTGTTTGTGGTTCAAGGACTCATATTGGCCATTTCGTTGGCAATATGACTACTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGAGTTGTACTGTTTCTTACAACAAAAGAGGCTTTCAAAATGTTAGTAAAGCTAACATCAGTTTGGGAAACAAAGGACGGCCCAATAACTTCATGCTTTACCAATATTTCACGACTAATGTTGCAAAGAGGAGGACTAACCTCAATCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTTTTCTGGAACTGCCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTGGATGCTGTTAATTCTTCTGAAGCAAAGATCCCCTTGCAGCTAAACTCGGGATCCTTTTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCCTTACACCAGCAATCGGGTGTAGCTGATGGTG-TGGTGGATGGGCAGATCTTGGTAATTGATGCTGGACTATATGCTCCGTGAAATTGATGTCTCAACTTCTTTTATCTGCGAATTCAAGATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353463" ref_strand="+" ref_description="SGN-E353463 [cTOS-15-E13]">
      <seq>ttaatttaggagatagcggatttatgttggttagaaatggatgtgctgcatttaaatccccttcacagcagcatgggtttaatttcccatatcaactagattgcaacaacgcaggtgattcacctagctctgccatggtattcaaaattactgctttacctggagatgtcctaattgttggtacagatgggctttttgataatttgtatgacgaagatatcagtggagttgtatttcaggccatggaagatggcttagcgcctcagatgactgctcagcggatagcagaactggcacaactaagagcaatggatcatatcaagtcttcgcctttctctgatggagctcgcgaggctggatttgattaccatggtgggaagctggacgacatcaccgtagttgtttcttacataacagagtaaaattgaaaatccacaccatgtcacaatattcagtgatactattggaacagaatcaaaagctgaaggagagtcatacaatacagcaactttgatttgtttctaaaacaaagacacacaaatcaaagacaagaatgagaaggcttcagcagcatcttgggtctagctcagttcacctcagtttgatacaagtggtttactttatgaaattcaaatagcatgttgggatcattaacatttattttgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="76387" stop="77655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76687" g_stop="77355" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E353463" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76687" e_stop="77355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTAGGAGATAGCGGATTTATGTTGGTTAGAAATGGATGTGCTGCATTTAAATCCCCTTCACAGCAGCATGGGTTTAATTTCCCATATCAACTAGATTGCAACAACGCAGGTGATTCACCTAGCTCTGCCATGGTATTCAAAATTACTGCTTTACCTGGAGATGTCCTAATTGTTGGTACAGATGGGCTTTTTGATAATTTGTATGACGAAGATATCAGTGGAGTTGTATTTCAGGCCATGGAAGATGGCTTAGCGCCTCAGATGACTGCTCAGCGGATAGCAGAACTGGCACAACTAAGAGCAATGGATCATATCAAGTCTTCGCCTTTCTCTGATGGAGCTCGCGAGGCTGGATTTGATTACCATGGTGGGAAGCTGGACGACATCACCGTAGTTGTTTCTTACATAACAGAGTAAAATTGAAAATCCACACCATGTCACAATATTCAGTGATACTATTGGAACAGAATCAAAAGCTGAAGGAGAGTCATACAATACAGCAACTTTGATTTGTTTCTAAAACAAAGACACACAAATCAAAGACAAGAATGAGAAGGCTTCAGCAGCATCTTGGGTCTAGCTCAGTTCACCTCAGTTTGATACAAGTGTTTTACTTTATGAAATTCAAATAGCATGTTGGGATCATTAACATTTA-TTTGATGGA</genome_strand>
        <mrna_strand>TTAATTTAGGAGATAGCGGATTTATGTTGGTTAGAAATGGATGTGCTGCATTTAAATCCCCTTCACAGCAGCATGGGTTTAATTTCCCATATCAACTAGATTGCAACAACGCAGGTGATTCACCTAGCTCTGCCATGGTATTCAAAATTACTGCTTTACCTGGAGATGTCCTAATTGTTGGTACAGATGGGCTTTTTGATAATTTGTATGACGAAGATATCAGTGGAGTTGTATTTCAGGCCATGGAAGATGGCTTAGCGCCTCAGATGACTGCTCAGCGGATAGCAGAACTGGCACAACTAAGAGCAATGGATCATATCAAGTCTTCGCCTTTCTCTGATGGAGCTCGCGAGGCTGGATTTGATTACCATGGTGGGAAGCTGGACGACATCACCGTAGTTGTTTCTTACATAACAGAGTAAAATTGAAAATCCACACCATGTCACAATATTCAGTGATACTATTGGAACAGAATCAAAAGCTGAAGGAGAGTCATACAATACAGCAACTTTGATTTGTTTCTAAAACAAAGACACACAAATCAAAGACAAGAATGAGAAGGCTTCAGCAGCATCTTGGGTCTAGCTCAGTTCACCTCAGTTTGATACAAGTGGTTTACTTTATGAAATTCAAATAGCATGTTGGGATCATTAACATTTATTTTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351731" ref_strand="+" ref_description="SGN-E351731 [cTOS-8-J17]">
      <seq>tagattgcaacaacgcaggtgattcacctagctctgccatggtattcaaaattactgctttacctggagatgtcctaattgttggtacagatgggctttttgataatttgtatgacgaagatatcagtggagttgtatttcaggccatggaagatggcttagcgcctcagatgactgctcagcggatagcagaactggcacaactaagagcaatggatcatatcaagtcttcgcctttctctgatggagctcgcgaggctggatttgattaccatggtgggaagctggacgacatcaccgtagttgtttcttacataacagagtaaaattgaaaatccacaccatgtcacaatattcagtgatactattggaacagaatcaaaagctgaaggagagtcatacaatacagcaactttgatttgtttctaaaacaaagacacacaaatcaaagacaagaatgagaaggcttcagcagcatcttgggtctagctcagttcacctcagtttgatacaagtgttttactttatgaaattcaaatagcatgttgggatcattaacatttatttgatggaggattttcttctgtatttttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="76483" stop="77679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76783" g_stop="77379" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E351731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76783" e_stop="77379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTGCAACAACGCAGGTGATTCACCTAGCTCTGCCATGGTATTCAAAATTACTGCTTTACCTGGAGATGTCCTAATTGTTGGTACAGATGGGCTTTTTGATAATTTGTATGACGAAGATATCAGTGGAGTTGTATTTCAGGCCATGGAAGATGGCTTAGCGCCTCAGATGACTGCTCAGCGGATAGCAGAACTGGCACAACTAAGAGCAATGGATCATATCAAGTCTTCGCCTTTCTCTGATGGAGCTCGCGAGGCTGGATTTGATTACCATGGTGGGAAGCTGGACGACATCACCGTAGTTGTTTCTTACATAACAGAGTAAAATTGAAAATCCACACCATGTCACAATATTCAGTGATACTATTGGAACAGAATCAAAAGCTGAAGGAGAGTCATACAATACAGCAACTTTGATTTGTTTCTAAAACAAAGACACACAAATCAAAGACAAGAATGAGAAGGCTTCAGCAGCATCTTGGGTCTAGCTCAGTTCACCTCAGTTTGATACAAGTGTTTTACTTTATGAAATTCAAATAGCATGTTGGGATCATTAACATTTATTTGATGGAGGATTTTCTTCTGTATTTTTGTTT</genome_strand>
        <mrna_strand>TAGATTGCAACAACGCAGGTGATTCACCTAGCTCTGCCATGGTATTCAAAATTACTGCTTTACCTGGAGATGTCCTAATTGTTGGTACAGATGGGCTTTTTGATAATTTGTATGACGAAGATATCAGTGGAGTTGTATTTCAGGCCATGGAAGATGGCTTAGCGCCTCAGATGACTGCTCAGCGGATAGCAGAACTGGCACAACTAAGAGCAATGGATCATATCAAGTCTTCGCCTTTCTCTGATGGAGCTCGCGAGGCTGGATTTGATTACCATGGTGGGAAGCTGGACGACATCACCGTAGTTGTTTCTTACATAACAGAGTAAAATTGAAAATCCACACCATGTCACAATATTCAGTGATACTATTGGAACAGAATCAAAAGCTGAAGGAGAGTCATACAATACAGCAACTTTGATTTGTTTCTAAAACAAAGACACACAAATCAAAGACAAGAATGAGAAGGCTTCAGCAGCATCTTGGGTCTAGCTCAGTTCACCTCAGTTTGATACAAGTGTTTTACTTTATGAAATTCAAATAGCATGTTGGGATCATTAACATTTATTTGATGGAGGATTTTCTTCTGTATTTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375626" ref_strand="+" ref_description="SGN-E375626 [TUS-35-G1](-)">
      <seq>cagcaaattcttctagatgttgtttgtgtattcaacaatgtttcctctttatcacagagggaacaagccatcaaattgactcaagatggttttgaggtttttagagaatattttccgccaaagcagcaggtggtcttcctcgaatgtatttgggaatctgataagtatatgttagttgagagacaaaatcagaaagatgttggaagccaggaaaaggatgttggagaagatgtttctgtagaagcatctaaggttcagtatgaaagcattgggcttttcctaggagatgatgaacctggacagacggcctctaaagattcagctgaggatggtcaaactatgaaggacaacgatatagtagattccttggaggatcctatccaagatagtaatgatgaatctcaagctcaagttgattcaactattgcagaaccttctggaaataattttgatgctcctgaagccggagcacttccaagttcatcacgagacaagaatccttcaaaagccaaacatggatcaagaaatagcgttgcatttgtttcagtaaaaagacccaaactgtcaacaaacaatgagttggggtttgacattcatagaacagaaaaggttgataatcctggtgtagataaagaagatccatttttcagtttactttttagtggaaatgtgaagagcagtctattctgaacttcacctaaatagtttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="79326" stop="77337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79022" g_stop="78933" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="96" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78932" i_stop="78689" i_length="244">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78688" g_stop="78499" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="286" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78064" g_stop="77638" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="713" r_length="427" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77637" i_stop="77484" i_length="154">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77483" g_stop="77477" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="720" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E375626" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79022" e_stop="78933"/>
          <exon e_start="78688" e_stop="78499"/>
          <exon e_start="78064" e_stop="77638"/>
          <exon e_start="77483" e_stop="77477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAGGTTGTTTCTTTGCTACTGACCACTCTCTGTTTTTCTGATGCAATGGAAGAAATTCTTTTCCTTCCTTATATTCGCTTTGTTTACTAGCTTTTTTGATTGGTTTTTAATTAGTTCTGTTAAGGTCAAGAAATGGTTGGTAAAGTTATGTTGAGATAGGAAAATTGATAGTACTTCCTTGATAGTCGTTAATAACAACTCTAAGATGAAATCAAAGAAGCAAATGTTCAATAATTTGGCATTGCAGGTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAGGTAACCATGAACCCAAGTTCTTTTTACTGTCTTTGTTTCCTTTATCAAGTCATATTCTATCAGTTTGAGATAGAAGTGAACTGAAGGTTGCATGTGATGATTTCATTTAAAGATAGCATTATCCTGTGTTTTTCTGTTTGCCAGTTTTTATCGTTAAAAAAGGGCAGCCTAATGCACGAAACATCTGGTAGTTCACATAGGATTTGGGGAATGGACACATACCTAGGGGATGTAGTATAGGCAGCGTACCTGACACCAGTTTTAGTTATTCAGTTTGACAATAAAGTTCATGGAAGACGTGTCTGTTGCATATCTTTCTAGTGTATTCATATATCTATTGCTTCTTACTCCTTACAATCAAGTTCTTCGTTTGTTGCTGGAATTCAGTGTCATTCGTCTATAATTTTGTAAACTTTTTTCGGGATCTTGTGTAGATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGTTGATAATCCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGTGAAGAGCAGTCTATTCTGAACTTCACCTAAATAGTTTTTCATATCTCCTTGTTTTTCTCTGTTAACTAGGCTGCGGCGCATCTTTGCGTCCATATATGTGAGTTGATGCTCAATCATGTTCAAATTTGGACAATTTATCCCAATTGGTTTTAAATTTTTAAAGTTGATGCTCAATCATGTCCTTTTTTGAGGGTAGGAAGAAA</genome_strand>
        <mrna_strand>ATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAG....................................................................................................................................................................................................................................................GTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGTTGATAATCCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGTGAAGAGCAGTCTATTCTGAACTTCACCTAAATAGTTTTTCAA..........................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375710" ref_strand="+" ref_description="SGN-E375710 [TUS-35-E19](-)">
      <seq>tgttgtttgtgtattcaacaatgtttcctctttatcacagagggaacaagccatcaaattgactcaagatggttttgaggtttttagagaatattttccgccaaagcagcaggtggtcttcctcgaatgtatttgggaatctgataagtatatgttagttgagagacaaaatcagaaagatgttggaagccaggaaaaggatgttggagaagatgtttctgtagaagcatctaaggttcagtatgaaagcattgggcttttcctaggagatgatgaacctggacagacggcctctaaagattcagctgaggatggtcaaactatgaaggacaacgatatagtagattccttggaggatcctatccaagatagtaatgatgaatctcaagctcaagttgattcaactattgcagaaccttctggaaataattttgatgctcctgaagccggagcacttccaagttcatcacgagacaagaatccttcaaaagccaaacatggatcaagaaatagcgttgcatttgtttcagtaaaaagacccaaactgtcaacaaacaatgagttggggtttgacattcatagaacagaaaaggttgataatcctggtgtagataaagaagatccatttttcagtttactttttagtggaaatgtgaagagcagtctattctgaacttcacctaaatagtttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="79311" stop="77337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79011" g_stop="78933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78932" i_stop="78689" i_length="244">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78688" g_stop="78499" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="269" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78064" g_stop="77638" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="696" r_length="427" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77637" i_stop="77484" i_length="154">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77483" g_stop="77477" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="703" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E375710" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79011" e_stop="78933"/>
          <exon e_start="78688" e_stop="78499"/>
          <exon e_start="78064" e_stop="77638"/>
          <exon e_start="77483" e_stop="77477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAGGTTGTTTCTTTGCTACTGACCACTCTCTGTTTTTCTGATGCAATGGAAGAAATTCTTTTCCTTCCTTATATTCGCTTTGTTTACTAGCTTTTTTGATTGGTTTTTAATTAGTTCTGTTAAGGTCAAGAAATGGTTGGTAAAGTTATGTTGAGATAGGAAAATTGATAGTACTTCCTTGATAGTCGTTAATAACAACTCTAAGATGAAATCAAAGAAGCAAATGTTCAATAATTTGGCATTGCAGGTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAGGTAACCATGAACCCAAGTTCTTTTTACTGTCTTTGTTTCCTTTATCAAGTCATATTCTATCAGTTTGAGATAGAAGTGAACTGAAGGTTGCATGTGATGATTTCATTTAAAGATAGCATTATCCTGTGTTTTTCTGTTTGCCAGTTTTTATCGTTAAAAAAGGGCAGCCTAATGCACGAAACATCTGGTAGTTCACATAGGATTTGGGGAATGGACACATACCTAGGGGATGTAGTATAGGCAGCGTACCTGACACCAGTTTTAGTTATTCAGTTTGACAATAAAGTTCATGGAAGACGTGTCTGTTGCATATCTTTCTAGTGTATTCATATATCTATTGCTTCTTACTCCTTACAATCAAGTTCTTCGTTTGTTGCTGGAATTCAGTGTCATTCGTCTATAATTTTGTAAACTTTTTTCGGGATCTTGTGTAGATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGTTGATAATCCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGTGAAGAGCAGTCTATTCTGAACTTCACCTAAATAGTTTTTCATATCTCCTTGTTTTTCTCTGTTAACTAGGCTGCGGCGCATCTTTGCGTCCATATATGTGAGTTGATGCTCAATCATGTTCAAATTTGGACAATTTATCCCAATTGGTTTTAAATTTTTAAAGTTGATGCTCAATCATGTCCTTTTTTGAGGGTAGGAAGAAA</genome_strand>
        <mrna_strand>TGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAG....................................................................................................................................................................................................................................................GTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGTTGATAATCCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGTGAAGAGCAGTCTATTCTGAACTTCACCTAAATAGTTTTTCAA..........................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426446" ref_strand="-" ref_description="SGN-E426446 [STM-46-H13]">
      <seq>taagtatattttagttgagagacaaaatcagaaagatgtcggaagccaggaaaaggaggttggagaagatgtttctgtagaagcatctaaggttcagtatgaaagcattgagcttttcctaggagatgacaaacctggacagatggcctctaaagattcggctgaggatggtcaaactataaaggacaacgatatagtagattccttggaggatcctatccaagatagtaatgatgaatctcgagctcaagttgattcaactattgcaggaccttcaggcaatagttttgatgctcctgaagccggagcacatccaagtacatcacccgacgagaatcctgccaaagccaaacacggatcaagaaatagtgttgcatttgtttcagtgaaaagacccaaagtgtcaacaaacaatgagttggggtttgacattcatagaacagaaaagggtgataattctggtgtagataaagaagatccatttttcagtttacttttcagtggaaatgtgaagaccagtctattctgaacttcacctaaatagtttttcatttctccttgtttttctctgttaactaggccgtggcgcatctttgcgtccatatttgtgagttgatgctcaatcatgtccaaatttggtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="78923" stop="77247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78623" g_stop="78499" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78064" g_stop="77547" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="643" r_length="518" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E426446" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426446" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78623" e_stop="78499"/>
          <exon e_start="78064" e_stop="77547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAGGTAACCATGAACCCAAGTTCTTTTTACTGTCTTTGTTTCCTTTATCAAGTCATATTCTATCAGTTTGAGATAGAAGTGAACTGAAGGTTGCATGTGATGATTTCATTTAAAGATAGCATTATCCTGTGTTTTTCTGTTTGCCAGTTTTTATCGTTAAAAAAGGGCAGCCTAATGCACGAAACATCTGGTAGTTCACATAGGATTTGGGGAATGGACACATACCTAGGGGATGTAGTATAGGCAGCGTACCTGACACCAGTTTTAGTTATTCAGTTTGACAATAAAGTTCATGGAAGACGTGTCTGTTGCATATCTTTCTAGTGTATTCATATATCTATTGCTTCTTACTCCTTACAATCAAGTTCTTCGTTTGTTGCTGGAATTCAGTGTCATTCGTCTATAATTTTGTAAACTTTTTTCGGGATCTTGTGTAGATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGTTGATAATCCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGTGAAGAGCAGTCTATTCTGAACTTCACCTAAATAGTTTTTCATATCTCCTTGTTTTTCTCTGTTAACTAGGCTGCGGCGCATCTTTGCGTCCATATATGTGAGTTGATGCTCAATCATGTTCAAATTTGGACAA</genome_strand>
        <mrna_strand>TAAGTATATTTTAGTTGAGAGACAAAATCAGAAAGATGTCGGAAGCCAGGAAAAGGAGGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGAGCTTTTCCTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAAACCTGGACAGATGGCCTCTAAAGATTCGGCTGAGGATGGTCAAACTATAAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCGAGCTCAAGTTGATTCAACTATTGCAGGACCTTCAGGCAATAGTTTTGATGCTCCTGAAGCCGGAGCACATCCAAGTACATCACCCGACGAGAATCCTGCCAAAGCCAAACACGGATCAAGAAATAGTGTTGCATTTGTTTCAGTGAAAAGACCCAAAGTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGGTGATAATTCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTCAGTGGAAATGTGAAGACCAGTCTATTCTGAACTTCACCTAAATAGTTTTTCATTTCTCCTTGTTTTTCTCTGTTAACTAGGCCGTGGCGCATCTTTGCGTCCATATTTGTGAGTTGATGCTCAATCATGTCCAAATTTGGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551950" ref_strand="+" ref_description="SGN-E551950 [cTSB-2-F6]">
      <seq>agatggttttgaggtttttagagaatattttccgccaaagcagcaggtggtcttcctcgaatgtatttgggaatctgataagtatatgttagttgagagacaaaatcagaaagatgttggaagccaggaaaaggatgttggagaagatgtttctgtagaagcatctaaggttcagtatgaaagcattgggcttttcctaggagatgatgaacctggacagacggcctctaaagattcagctgaggatggtcaaactatgaaggacaacgatatagtagattccttggaggatcctatccaagatagtaatgatgaatctcaagctcaagttgattcaactattgcagaaccttctggaaataattttgatgctcctgaagccggagcacttccaagttcatcacgagacaagaatccttcaaaagccaaacatggatcaagaaatagcgttgcatttgtttcagtaaaaagacccaaactgtcaacaaacaatgagttggggtttgacattcatagaacagaaaaggttgataatcctggtgtagataaagaagatccatttttcagtttactttttagtggaaatgtgaagagcagtctattctgaacttcacctanntnananaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="78999" stop="77351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78945" g_stop="78933" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78932" i_stop="78689" i_length="244">
            <donor d_prob="0.714" d_score="0.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78688" g_stop="78499" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="203" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78064" g_stop="77647" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="621" r_length="418" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="626" polyA_stop="646"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E551950" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78945" e_stop="78933"/>
          <exon e_start="78688" e_stop="78499"/>
          <exon e_start="78064" e_stop="77647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGTTTTGAGGTTGTTTCTTTGCTACTGACCACTCTCTGTTTTTCTGATGCAATGGAAGAAATTCTTTTCCTTCCTTATATTCGCTTTGTTTACTAGCTTTTTTGATTGGTTTTTAATTAGTTCTGTTAAGGTCAAGAAATGGTTGGTAAAGTTATGTTGAGATAGGAAAATTGATAGTACTTCCTTGATAGTCGTTAATAACAACTCTAAGATGAAATCAAAGAAGCAAATGTTCAATAATTTGGCATTGCAGGTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAGGTAACCATGAACCCAAGTTCTTTTTACTGTCTTTGTTTCCTTTATCAAGTCATATTCTATCAGTTTGAGATAGAAGTGAACTGAAGGTTGCATGTGATGATTTCATTTAAAGATAGCATTATCCTGTGTTTTTCTGTTTGCCAGTTTTTATCGTTAAAAAAGGGCAGCCTAATGCACGAAACATCTGGTAGTTCACATAGGATTTGGGGAATGGACACATACCTAGGGGATGTAGTATAGGCAGCGTACCTGACACCAGTTTTAGTTATTCAGTTTGACAATAAAGTTCATGGAAGACGTGTCTGTTGCATATCTTTCTAGTGTATTCATATATCTATTGCTTCTTACTCCTTACAATCAAGTTCTTCGTTTGTTGCTGGAATTCAGTGTCATTCGTCTATAATTTTGTAAACTTTTTTCGGGATCTTGTGTAGATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGTTGATAATCCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGTGAAGAGCAGTCTATTCTGAACTTCACCTAAATA</genome_strand>
        <mrna_strand>AGATGGTTTTGAG....................................................................................................................................................................................................................................................GTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGTTGATAATCCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGTGAAGAGCAGTCTATTCTGAACTTCACCTANNTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413241" ref_strand="-" ref_description="SGN-E413241 [STM-17-H9]">
      <seq>taagtatattttagttgagagacaaaatcagaaagatgtcggaagccaggaaaaggaggttggagaagatgtttctgtagaagcatctaaggttcagtatgaaagcattgagcttttcctaggagatgacaaacctggacagacggcctctaaagattcggctgaggatggtcaaactataaaggacaatgatatagtagattccttggaggatcctatccaagatagtaatgatgaatctcgagctcaagttgattcaactattgcaggaccttcaggcaataattttgatactcctgaagccggagcacttccaagtacatcacccgacaagaatcctgccaaagccaaacacggatcaagaaatagtgttgcatttatttcagtgaaaagacccaaagtgtcaacaaacaatgagttggggtttgacattcatagaacagaaaagggtgataattctggtgtagataaagaagatccatttttcagtttactttttagtggaaatgcgaaggcaagtctattctgaacttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="78923" stop="77354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78623" g_stop="78499" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78064" g_stop="77654" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="536" r_length="411" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E413241" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413241" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78623" e_stop="78499"/>
          <exon e_start="78064" e_stop="77654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAGGTAACCATGAACCCAAGTTCTTTTTACTGTCTTTGTTTCCTTTATCAAGTCATATTCTATCAGTTTGAGATAGAAGTGAACTGAAGGTTGCATGTGATGATTTCATTTAAAGATAGCATTATCCTGTGTTTTTCTGTTTGCCAGTTTTTATCGTTAAAAAAGGGCAGCCTAATGCACGAAACATCTGGTAGTTCACATAGGATTTGGGGAATGGACACATACCTAGGGGATGTAGTATAGGCAGCGTACCTGACACCAGTTTTAGTTATTCAGTTTGACAATAAAGTTCATGGAAGACGTGTCTGTTGCATATCTTTCTAGTGTATTCATATATCTATTGCTTCTTACTCCTTACAATCAAGTTCTTCGTTTGTTGCTGGAATTCAGTGTCATTCGTCTATAATTTTGTAAACTTTTTTCGGGATCTTGTGTAGATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGTTGATAATCCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGTGAAGAGCAGTCTATTCTGAACTTCAC</genome_strand>
        <mrna_strand>TAAGTATATTTTAGTTGAGAGACAAAATCAGAAAGATGTCGGAAGCCAGGAAAAGGAGGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGAGCTTTTCCTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAAACCTGGACAGACGGCCTCTAAAGATTCGGCTGAGGATGGTCAAACTATAAAGGACAATGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCGAGCTCAAGTTGATTCAACTATTGCAGGACCTTCAGGCAATAATTTTGATACTCCTGAAGCCGGAGCACTTCCAAGTACATCACCCGACAAGAATCCTGCCAAAGCCAAACACGGATCAAGAAATAGTGTTGCATTTATTTCAGTGAAAAGACCCAAAGTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGGTGATAATTCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGCGAAGGCAAGTCTATTCTGAACTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375627" ref_strand="+" ref_description="SGN-E375627 [TUS-35-G1]">
      <seq>aagatctaatggtggcaaatataactttctggagcggcttttaggggttgcgcatctgttgtcacagatggttgagccagttttaagggccgcgtcggagatatccacacttcttgcacgatcattttttatgggattttcgctgacagtattgtccttgcttgcccgaataagagttctagttcagcaaattcttctagatgttgtttgtgtattcaacaatgtttcctctttatcacagagggaacaagccatcaaattgactcaagatggttttgaggtttttagagaatattttccgccaaagcagcaggtggtcttcctcgaatgtatttgggaatctgataagtatatgttagttgagagacaaaatcagaaagatgttggaagccaggaaaaggatgttggagaagatgtttctgtagaagcatctaaggttcagtatgaaagcattgggcttttcctaggagatgatgaacctggacagacggcctctaaagattcagctgaggatggtcaaactatgaaggacaacgatatagtagattccttggaggatcctatccaagatagtaatgatgaatctcaagctcaagttgattcaactattgcagaaccttctggaaataattttgatgctcctgaagccggagcctttccaagttcatcacgagacaagaatccttcaaaagccaaacatggatcaagaaatagcgttgcatttgttttagtaaaaagacccaaactgtcaacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="80972" stop="77477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80672" g_stop="80606" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80605" i_stop="80033" i_length="573">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80032" g_stop="80004" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="96" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80003" i_stop="79510" i_length="494">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79509" g_stop="79416" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="190" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79415" i_stop="79023" i_length="393">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79022" g_stop="78933" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="280" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78932" i_stop="78689" i_length="244">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78688" g_stop="78499" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="470" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78064" g_stop="77777" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="758" r_length="288" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E375627" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80672" e_stop="80606"/>
          <exon e_start="80032" e_stop="80004"/>
          <exon e_start="79509" e_stop="79416"/>
          <exon e_start="79022" e_stop="78933"/>
          <exon e_start="78688" e_stop="78499"/>
          <exon e_start="78064" e_stop="77777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAGGTATCATTGTTTCTTTCATTATTACTTCTTGTTGTTCTGCACCTAAAACCGCTCATCCATGTCTCTAAGTAACTCATGTTAGCGAAGCTCACTTGCTATCATTTACTGGCAATATTCCCCTGTTTTCATGAATAAAAAGGGAAGCTTGGTGCACAAAACACTCTGTGTTCACATAAAGTCTTGGTAAGGGCCACATCCCGAAGGGGTGTAACATATGCTAATGCAAGCCTTAGTGGTCAATTCCACGCACGAACCTATGACCTATAGGCACACAGAGACACCTTATCATTGCTCCAAGATTCCATGTATACCAGTAGCACATGTTAGGACATGTGTTTAGAGTCTCTTAAGTATTGAATATAGTACTGAGATTCATGTAGCCGATCCTAATTCACCTAGTATTGATGCATAGTTATTGTTGTTCCATATAACAACAGGAATGATGATCTCTGTCTCTCTCTCTAATCAAGCATCTTAATATAGGGGGCTTAATAAGAATCATTTTACAAGGAGAACTTCAAGCTATCATCTTATAAAGTAGTAATTCCTAATTCACTTGTTTGTTTCTTGCAGATGGTTGAGCCAGTTTTAAGGGCCGCGTCGTATCCTTCTTACTTCTTTTTTGCGCACTAATCCTTCATTTTTTATGTTGTTTATGGGACAAGATTTACTTAAATAATAGGAAGAGATTAAGTTGTTCATTTTCTTTCATAGCTCTTTGGGTGTGTTAGGTGATTGGAATAAATGAGGTTATGTTTTGAAATACAGTGAGTGCTTATTTAGCTACATATAACAAAACCTTTTCTGTTCTACAAATTACTAGAGTTCTGCACAGCTGATTTGCCGTAAACATATCGGTTTGATAAATTGGTGTTGTTGGATATTAATAGTACTTCCTTTCTTCCTTGTTTTTTTCCATATATTCATAATTGCACATGTCCTATCTTCGTCTCATTTGGTAAGATGACTTTGTTTTTCATCTGTGCTGATTGCTTTTCATTTCAAAGTAAACACTTGATCAATGTTCCTGTTTTATGTAAATTCCAATGTGGATTTTTAGCCATTAATGATTGTTTCTACCCTTAACAGTAGACAGGGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAAGTAAGTATTCTCAGTGTGATTTTATCATTTTCAGAACTGTGAAATGGTATGTGCACTCATGAAGAATGACACCATTTTAAAGCTCATTCCTTCGTCATACTTCTTATAGTAAAGGTCTTGCACATGGATTGCGTTCTTTTGAAATTTGAGTTTGTTGAAGTTTTAGTTTCCAGTATAATACACTGGAGTCATGTTAGTTTCTGGAGCTTATTATATGGAGTAACTAGTCTAACTCAAGAGTCAAGGGTACTGGGTCATGTATGACATGGGACTTTTTGCTCTTCTAGGAGCATTCAATATTTAAGGAGTTGTAAATCTTATGCTGAGCAAATTTTCTAAGGATATCTAGTGATTGAACAGGACATTTAATCAAAATTTCTCTATTTATTGCAGATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAGGTTGTTTCTTTGCTACTGACCACTCTCTGTTTTTCTGATGCAATGGAAGAAATTCTTTTCCTTCCTTATATTCGCTTTGTTTACTAGCTTTTTTGATTGGTTTTTAATTAGTTCTGTTAAGGTCAAGAAATGGTTGGTAAAGTTATGTTGAGATAGGAAAATTGATAGTACTTCCTTGATAGTCGTTAATAACAACTCTAAGATGAAATCAAAGAAGCAAATGTTCAATAATTTGGCATTGCAGGTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAGGTAACCATGAACCCAAGTTCTTTTTACTGTCTTTGTTTCCTTTATCAAGTCATATTCTATCAGTTTGAGATAGAAGTGAACTGAAGGTTGCATGTGATGATTTCATTTAAAGATAGCATTATCCTGTGTTTTTCTGTTTGCCAGTTTTTATCGTTAAAAAAGGGCAGCCTAATGCACGAAACATCTGGTAGTTCACATAGGATTTGGGGAATGGACACATACCTAGGGGATGTAGTATAGGCAGCGTACCTGACACCAGTTTTAGTTATTCAGTTTGACAATAAAGTTCATGGAAGACGTGTCTGTTGCATATCTTTCTAGTGTATTCATATATCTATTGCTTCTTACTCCTTACAATCAAGTTCTTCGTTTGTTGCTGGAATTCAGTGTCATTCGTCTATAATTTTGTAAACTTTTTTCGGGATCTTGTGTAGATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACA</genome_strand>
        <mrna_strand>AAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGAGCCAGTTTTAAGGGCCGCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAG....................................................................................................................................................................................................................................................GTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCCTTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTTAGTAAAAAGACCCAAACTGTCAACAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375711" ref_strand="+" ref_description="SGN-E375711 [TUS-35-E19]">
      <seq>aagatctaatggtggcaaatataactttctggagcggcttttaggggttgcgcatctgttgtcacagatggttgagccagttttaagggccgcgtcggagatatccacacttcttgcacgatcattttttatgggattttcgctgacagtattgtccttgcttgcccgaataagagttctagttcagcaaattcttctagatgttgtttgtgtattcaacaatgtttcctctttatcacagagggaacaagccatcaaattgactcaagatggttttgaggtttttagagaatattttccgccaaagcagcaggtggtcttcctcgaatgtatttgggaatctgataagtatatgttagttgagagacaaaatcagaaagatgttggaagccaggaaaaggatgttggagaagatgtttctgtagaagcatctaaggttcagtatgaaagcattgggcttttcctaggagatgatgaacctggacagacggcctctaaagattcagctgaggatggtcaaactatgaaggacaacgatatagtagattccttggaggatcctatccaagatagtaatgatgaatctcaagctcaagttgattcaactattgcagaaccttctggaaataattttgatgctcctgaagccggagcctttccaagttcatcacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="80972" stop="77561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80672" g_stop="80606" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80605" i_stop="80033" i_length="573">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80032" g_stop="80004" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="96" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80003" i_stop="79510" i_length="494">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79509" g_stop="79416" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="190" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79415" i_stop="79023" i_length="393">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79022" g_stop="78933" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="280" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78932" i_stop="78689" i_length="244">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78688" g_stop="78499" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="470" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78064" g_stop="77861" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="674" r_length="204" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E375711" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80672" e_stop="80606"/>
          <exon e_start="80032" e_stop="80004"/>
          <exon e_start="79509" e_stop="79416"/>
          <exon e_start="79022" e_stop="78933"/>
          <exon e_start="78688" e_stop="78499"/>
          <exon e_start="78064" e_stop="77861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAGGTATCATTGTTTCTTTCATTATTACTTCTTGTTGTTCTGCACCTAAAACCGCTCATCCATGTCTCTAAGTAACTCATGTTAGCGAAGCTCACTTGCTATCATTTACTGGCAATATTCCCCTGTTTTCATGAATAAAAAGGGAAGCTTGGTGCACAAAACACTCTGTGTTCACATAAAGTCTTGGTAAGGGCCACATCCCGAAGGGGTGTAACATATGCTAATGCAAGCCTTAGTGGTCAATTCCACGCACGAACCTATGACCTATAGGCACACAGAGACACCTTATCATTGCTCCAAGATTCCATGTATACCAGTAGCACATGTTAGGACATGTGTTTAGAGTCTCTTAAGTATTGAATATAGTACTGAGATTCATGTAGCCGATCCTAATTCACCTAGTATTGATGCATAGTTATTGTTGTTCCATATAACAACAGGAATGATGATCTCTGTCTCTCTCTCTAATCAAGCATCTTAATATAGGGGGCTTAATAAGAATCATTTTACAAGGAGAACTTCAAGCTATCATCTTATAAAGTAGTAATTCCTAATTCACTTGTTTGTTTCTTGCAGATGGTTGAGCCAGTTTTAAGGGCCGCGTCGTATCCTTCTTACTTCTTTTTTGCGCACTAATCCTTCATTTTTTATGTTGTTTATGGGACAAGATTTACTTAAATAATAGGAAGAGATTAAGTTGTTCATTTTCTTTCATAGCTCTTTGGGTGTGTTAGGTGATTGGAATAAATGAGGTTATGTTTTGAAATACAGTGAGTGCTTATTTAGCTACATATAACAAAACCTTTTCTGTTCTACAAATTACTAGAGTTCTGCACAGCTGATTTGCCGTAAACATATCGGTTTGATAAATTGGTGTTGTTGGATATTAATAGTACTTCCTTTCTTCCTTGTTTTTTTCCATATATTCATAATTGCACATGTCCTATCTTCGTCTCATTTGGTAAGATGACTTTGTTTTTCATCTGTGCTGATTGCTTTTCATTTCAAAGTAAACACTTGATCAATGTTCCTGTTTTATGTAAATTCCAATGTGGATTTTTAGCCATTAATGATTGTTTCTACCCTTAACAGTAGACAGGGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAAGTAAGTATTCTCAGTGTGATTTTATCATTTTCAGAACTGTGAAATGGTATGTGCACTCATGAAGAATGACACCATTTTAAAGCTCATTCCTTCGTCATACTTCTTATAGTAAAGGTCTTGCACATGGATTGCGTTCTTTTGAAATTTGAGTTTGTTGAAGTTTTAGTTTCCAGTATAATACACTGGAGTCATGTTAGTTTCTGGAGCTTATTATATGGAGTAACTAGTCTAACTCAAGAGTCAAGGGTACTGGGTCATGTATGACATGGGACTTTTTGCTCTTCTAGGAGCATTCAATATTTAAGGAGTTGTAAATCTTATGCTGAGCAAATTTTCTAAGGATATCTAGTGATTGAACAGGACATTTAATCAAAATTTCTCTATTTATTGCAGATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAGGTTGTTTCTTTGCTACTGACCACTCTCTGTTTTTCTGATGCAATGGAAGAAATTCTTTTCCTTCCTTATATTCGCTTTGTTTACTAGCTTTTTTGATTGGTTTTTAATTAGTTCTGTTAAGGTCAAGAAATGGTTGGTAAAGTTATGTTGAGATAGGAAAATTGATAGTACTTCCTTGATAGTCGTTAATAACAACTCTAAGATGAAATCAAAGAAGCAAATGTTCAATAATTTGGCATTGCAGGTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAGGTAACCATGAACCCAAGTTCTTTTTACTGTCTTTGTTTCCTTTATCAAGTCATATTCTATCAGTTTGAGATAGAAGTGAACTGAAGGTTGCATGTGATGATTTCATTTAAAGATAGCATTATCCTGTGTTTTTCTGTTTGCCAGTTTTTATCGTTAAAAAAGGGCAGCCTAATGCACGAAACATCTGGTAGTTCACATAGGATTTGGGGAATGGACACATACCTAGGGGATGTAGTATAGGCAGCGTACCTGACACCAGTTTTAGTTATTCAGTTTGACAATAAAGTTCATGGAAGACGTGTCTGTTGCATATCTTTCTAGTGTATTCATATATCTATTGCTTCTTACTCCTTACAATCAAGTTCTTCGTTTGTTGCTGGAATTCAGTGTCATTCGTCTATAATTTTGTAAACTTTTTTCGGGATCTTGTGTAGATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAG</genome_strand>
        <mrna_strand>AAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGAGCCAGTTTTAAGGGCCGCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAG....................................................................................................................................................................................................................................................GTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCCTTTCCAAGTTCATCACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254195" ref_strand="+" ref_description="SGN-E254195 [cLEG-34-F19]">
      <seq>aagatctaatggtggcaaatataactttctggagcggcttttaggggttgcgcatctgttgtcacagatggttgagccagttttaagggccgcgtcggagatatccacacttcttgcacgatcattttttatgggattttcgctgacagtattgtccttgcttgcccgaataagagttctagttcagcaaattcttctagatgttgtttgtgtattcaacaatgtttcctctttatcacagagggaacaagccatcaaattgactcaagatggttttgaggtttttagagaatattttccgccaaagcagcaggtggtcttcctcgaatgtatttgggaatctgataagtatatgttagttgagagacaaaatcagaaagatgttggaagccaggaaaaggatgttggagaagatgtttctgtagaagcatctaaggttcagtatgaaagcattgggcttttcctaggagatgatgaacctggacagacggcctctaaagattcagctgaggatggtcaaactatgaaggacaacgatatagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="80972" stop="77690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80672" g_stop="80606" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80605" i_stop="80033" i_length="573">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80032" g_stop="80004" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="96" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80003" i_stop="79510" i_length="494">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79509" g_stop="79416" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="190" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79415" i_stop="79023" i_length="393">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79022" g_stop="78933" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="280" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78932" i_stop="78689" i_length="244">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78688" g_stop="78499" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="470" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78064" g_stop="77990" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="545" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80672" e_stop="80606"/>
          <exon e_start="80032" e_stop="80004"/>
          <exon e_start="79509" e_stop="79416"/>
          <exon e_start="79022" e_stop="78933"/>
          <exon e_start="78688" e_stop="78499"/>
          <exon e_start="78064" e_stop="77990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAGGTATCATTGTTTCTTTCATTATTACTTCTTGTTGTTCTGCACCTAAAACCGCTCATCCATGTCTCTAAGTAACTCATGTTAGCGAAGCTCACTTGCTATCATTTACTGGCAATATTCCCCTGTTTTCATGAATAAAAAGGGAAGCTTGGTGCACAAAACACTCTGTGTTCACATAAAGTCTTGGTAAGGGCCACATCCCGAAGGGGTGTAACATATGCTAATGCAAGCCTTAGTGGTCAATTCCACGCACGAACCTATGACCTATAGGCACACAGAGACACCTTATCATTGCTCCAAGATTCCATGTATACCAGTAGCACATGTTAGGACATGTGTTTAGAGTCTCTTAAGTATTGAATATAGTACTGAGATTCATGTAGCCGATCCTAATTCACCTAGTATTGATGCATAGTTATTGTTGTTCCATATAACAACAGGAATGATGATCTCTGTCTCTCTCTCTAATCAAGCATCTTAATATAGGGGGCTTAATAAGAATCATTTTACAAGGAGAACTTCAAGCTATCATCTTATAAAGTAGTAATTCCTAATTCACTTGTTTGTTTCTTGCAGATGGTTGAGCCAGTTTTAAGGGCCGCGTCGTATCCTTCTTACTTCTTTTTTGCGCACTAATCCTTCATTTTTTATGTTGTTTATGGGACAAGATTTACTTAAATAATAGGAAGAGATTAAGTTGTTCATTTTCTTTCATAGCTCTTTGGGTGTGTTAGGTGATTGGAATAAATGAGGTTATGTTTTGAAATACAGTGAGTGCTTATTTAGCTACATATAACAAAACCTTTTCTGTTCTACAAATTACTAGAGTTCTGCACAGCTGATTTGCCGTAAACATATCGGTTTGATAAATTGGTGTTGTTGGATATTAATAGTACTTCCTTTCTTCCTTGTTTTTTTCCATATATTCATAATTGCACATGTCCTATCTTCGTCTCATTTGGTAAGATGACTTTGTTTTTCATCTGTGCTGATTGCTTTTCATTTCAAAGTAAACACTTGATCAATGTTCCTGTTTTATGTAAATTCCAATGTGGATTTTTAGCCATTAATGATTGTTTCTACCCTTAACAGTAGACAGGGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAAGTAAGTATTCTCAGTGTGATTTTATCATTTTCAGAACTGTGAAATGGTATGTGCACTCATGAAGAATGACACCATTTTAAAGCTCATTCCTTCGTCATACTTCTTATAGTAAAGGTCTTGCACATGGATTGCGTTCTTTTGAAATTTGAGTTTGTTGAAGTTTTAGTTTCCAGTATAATACACTGGAGTCATGTTAGTTTCTGGAGCTTATTATATGGAGTAACTAGTCTAACTCAAGAGTCAAGGGTACTGGGTCATGTATGACATGGGACTTTTTGCTCTTCTAGGAGCATTCAATATTTAAGGAGTTGTAAATCTTATGCTGAGCAAATTTTCTAAGGATATCTAGTGATTGAACAGGACATTTAATCAAAATTTCTCTATTTATTGCAGATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAGGTTGTTTCTTTGCTACTGACCACTCTCTGTTTTTCTGATGCAATGGAAGAAATTCTTTTCCTTCCTTATATTCGCTTTGTTTACTAGCTTTTTTGATTGGTTTTTAATTAGTTCTGTTAAGGTCAAGAAATGGTTGGTAAAGTTATGTTGAGATAGGAAAATTGATAGTACTTCCTTGATAGTCGTTAATAACAACTCTAAGATGAAATCAAAGAAGCAAATGTTCAATAATTTGGCATTGCAGGTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAGGTAACCATGAACCCAAGTTCTTTTTACTGTCTTTGTTTCCTTTATCAAGTCATATTCTATCAGTTTGAGATAGAAGTGAACTGAAGGTTGCATGTGATGATTTCATTTAAAGATAGCATTATCCTGTGTTTTTCTGTTTGCCAGTTTTTATCGTTAAAAAAGGGCAGCCTAATGCACGAAACATCTGGTAGTTCACATAGGATTTGGGGAATGGACACATACCTAGGGGATGTAGTATAGGCAGCGTACCTGACACCAGTTTTAGTTATTCAGTTTGACAATAAAGTTCATGGAAGACGTGTCTGTTGCATATCTTTCTAGTGTATTCATATATCTATTGCTTCTTACTCCTTACAATCAAGTTCTTCGTTTGTTGCTGGAATTCAGTGTCATTCGTCTATAATTTTGTAAACTTTTTTCGGGATCTTGTGTAGATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAG</genome_strand>
        <mrna_strand>AAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGAGCCAGTTTTAAGGGCCGCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAG....................................................................................................................................................................................................................................................GTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273794" ref_strand="+" ref_description="SGN-E273794 [cLEN-7-B6]">
      <seq>gaagatgctcatattttcagtacctcttaaaggtgcgaagagatgtgaagctcctccaaacaactaacttggaggaggttttgagtgactcctttcaagttcttaacggaaaaagacccaagcaaaaagtgcagcttctggaaagcctaaagaggagaagatctaatggtggcaaatataactttctggagcggcttttaagggttgcgcatctgttgtcacagatggttgagccagttttaagggccgcgtcggagatatccacacttcttgcacgatcattttttatgggattttcgctgacagtattgtccttgcttgcccgaataagagttctagttcagcaaattcttctagatgttgtttgtgtattcaacaatgtttcctctttatcacagagggaacaagccatcaaattgactcaagatggttttgaggtttttagagaatattttccgccaaagcagcaggtggtcttcctcgaatgtatttgggaatctgataagtatatgttagttgagagacaaaatcagaaagatgttggaagccaggaaaaggatgttggagaagatgtttctgtagaagcatctaaagttcagtatgaaagcattgggcttttcctacgagatgatgaacctggacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="82500" stop="77748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82200" g_stop="82169" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82168" i_stop="81412" i_length="757">
            <donor d_prob="0.750" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81411" g_stop="81299" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="145" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81298" i_stop="80685" i_length="614">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80684" g_stop="80606" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="224" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80605" i_stop="80033" i_length="573">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80032" g_stop="80004" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="253" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80003" i_stop="79510" i_length="494">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79509" g_stop="79416" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="347" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79415" i_stop="79023" i_length="393">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79022" g_stop="78933" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="437" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78932" i_stop="78689" i_length="244">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78688" g_stop="78499" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="627" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="78064" g_stop="78048" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="644" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E273794" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82200" e_stop="82169"/>
          <exon e_start="81411" e_stop="81299"/>
          <exon e_start="80684" e_stop="80606"/>
          <exon e_start="80032" e_stop="80004"/>
          <exon e_start="79509" e_stop="79416"/>
          <exon e_start="79022" e_stop="78933"/>
          <exon e_start="78688" e_stop="78499"/>
          <exon e_start="78064" e_stop="78048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGCTCATATTTTCAGTACCTCTTAAAGGTTGTATTTTTAACTATATTTTTTCATATATGTATGTGTAATGAGCTTATTCTAGTAGTTTCTTGTCCTATGATTTCTGTTATTATTCGTTGTTTCAGGTGCTTAGGTTACACATTATTTAGCTACTGCTATTGTTCCTTGTCTTTACTTTTGTTTGGTATGTGTTATTTGAACCAAGGGTATTTTAGAAACAACCTCTTTGCTTTGTGTTCTTTGAGTATGTTTCTGCCCTAAACTAAGAAAGGGTATAATGCTCGTTTTGATAAGAGTATTGCATACTATCTGCTGGAATGTTTTGGACGTCTTTCTTATGCAACTATGGGAATTTCTTCTAGTGCGCTACTATCTTTTACTACAGCTCATGGCTGTCCTTGAACTGGCCAAAGAGCTTTCTATTTGAATGGAATTCCACAATTTCATAAGATTCGATCTAGAATGATTATACTTTGGTTAATTGGTTAGGTGTCGATAGCAGCAGAACCTTTGTTTTGGTCTATACTATGCATAGGGGTACCTATGGCATTACTGGGTATGTTGTTGTTGTTGTTGTTGTAATGGGCTTTGCTTTGTTTTAAACACAAAGAACTGTCATAGAAGATGTTCCTATTTCCAATACCCCTCAAAGGTTGTTACCAAGGTTATTTCACATATGTATTATTTGCATTGGGTTTTGGGGGGGGGGGGGGGGAATTGATGGGGTTTGCTCTATGTCCTAAGTGCAAATGCTTAGTTTATATGTTCGTTTTGATGATATTAGGTGCGAAGAGATGTGAGGCTCCTCCAAACAACTAACTTGGAGGAGGTTTTGAGTGACTCCTTTCAAGTTCTTAACGGAAAAAGACCCAAGCAAAAAGTGCAGCTTCTGGAAAGGTACTCTTGACCCCTTTAAAGCACCTATATTTTGTTTTGAGATTTTGATTATTATAGTATTTCTAGTGATGATATGGCAAGAATGGAATTTGATTACGTCATAAATGTACCCACTTTTTCATATCTACCAATGAGTAAATTTTGATTGGAGAGTGAGTCCTTATCATACTCTTGACAGTTTTTTGTTCCTATATTGATAACTACCACTTTCTGCCATTGAAACAATTGAACTGACACACAGGGAAGCTTAAAACTTAAATTGTCTTCCTTTTTTATATGATTTTCATCAATAATCATCCATCTCTTTGTATGAAACTGTTTGCTGATTATGATTGTTGAATGCTGTTTGATTGCTAAAAATTGGGTGTTTATGTGAGCTATAACAACATTTTTGCAAGTTCCATCCATCTTATCATTAACCGACAGATTGGATGTTAATACTCTAACCAGTAAGAAGGGAGACTAGTTGTATTGATCCCAGTCCACTGTCATGGAAATAGAATTGCCATTATTTATGTCTTGCTCTTCATATACGAACTCCCACTGCCGCTGTTCTAACCTATGATGATTTTATATTAAATTGAACTTTCACCCTCATTTTTCATTGGCCTCAGCCTAAAGAGGAGAAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAGGTATCATTGTTTCTTTCATTATTACTTCTTGTTGTTCTGCACCTAAAACCGCTCATCCATGTCTCTAAGTAACTCATGTTAGCGAAGCTCACTTGCTATCATTTACTGGCAATATTCCCCTGTTTTCATGAATAAAAAGGGAAGCTTGGTGCACAAAACACTCTGTGTTCACATAAAGTCTTGGTAAGGGCCACATCCCGAAGGGGTGTAACATATGCTAATGCAAGCCTTAGTGGTCAATTCCACGCACGAACCTATGACCTATAGGCACACAGAGACACCTTATCATTGCTCCAAGATTCCATGTATACCAGTAGCACATGTTAGGACATGTGTTTAGAGTCTCTTAAGTATTGAATATAGTACTGAGATTCATGTAGCCGATCCTAATTCACCTAGTATTGATGCATAGTTATTGTTGTTCCATATAACAACAGGAATGATGATCTCTGTCTCTCTCTCTAATCAAGCATCTTAATATAGGGGGCTTAATAAGAATCATTTTACAAGGAGAACTTCAAGCTATCATCTTATAAAGTAGTAATTCCTAATTCACTTGTTTGTTTCTTGCAGATGGTTGAGCCAGTTTTAAGGGCCGCGTCGTATCCTTCTTACTTCTTTTTTGCGCACTAATCCTTCATTTTTTATGTTGTTTATGGGACAAGATTTACTTAAATAATAGGAAGAGATTAAGTTGTTCATTTTCTTTCATAGCTCTTTGGGTGTGTTAGGTGATTGGAATAAATGAGGTTATGTTTTGAAATACAGTGAGTGCTTATTTAGCTACATATAACAAAACCTTTTCTGTTCTACAAATTACTAGAGTTCTGCACAGCTGATTTGCCGTAAACATATCGGTTTGATAAATTGGTGTTGTTGGATATTAATAGTACTTCCTTTCTTCCTTGTTTTTTTCCATATATTCATAATTGCACATGTCCTATCTTCGTCTCATTTGGTAAGATGACTTTGTTTTTCATCTGTGCTGATTGCTTTTCATTTCAAAGTAAACACTTGATCAATGTTCCTGTTTTATGTAAATTCCAATGTGGATTTTTAGCCATTAATGATTGTTTCTACCCTTAACAGTAGACAGGGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAAGTAAGTATTCTCAGTGTGATTTTATCATTTTCAGAACTGTGAAATGGTATGTGCACTCATGAAGAATGACACCATTTTAAAGCTCATTCCTTCGTCATACTTCTTATAGTAAAGGTCTTGCACATGGATTGCGTTCTTTTGAAATTTGAGTTTGTTGAAGTTTTAGTTTCCAGTATAATACACTGGAGTCATGTTAGTTTCTGGAGCTTATTATATGGAGTAACTAGTCTAACTCAAGAGTCAAGGGTACTGGGTCATGTATGACATGGGACTTTTTGCTCTTCTAGGAGCATTCAATATTTAAGGAGTTGTAAATCTTATGCTGAGCAAATTTTCTAAGGATATCTAGTGATTGAACAGGACATTTAATCAAAATTTCTCTATTTATTGCAGATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAGGTTGTTTCTTTGCTACTGACCACTCTCTGTTTTTCTGATGCAATGGAAGAAATTCTTTTCCTTCCTTATATTCGCTTTGTTTACTAGCTTTTTTGATTGGTTTTTAATTAGTTCTGTTAAGGTCAAGAAATGGTTGGTAAAGTTATGTTGAGATAGGAAAATTGATAGTACTTCCTTGATAGTCGTTAATAACAACTCTAAGATGAAATCAAAGAAGCAAATGTTCAATAATTTGGCATTGCAGGTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAGGTAACCATGAACCCAAGTTCTTTTTACTGTCTTTGTTTCCTTTATCAAGTCATATTCTATCAGTTTGAGATAGAAGTGAACTGAAGGTTGCATGTGATGATTTCATTTAAAGATAGCATTATCCTGTGTTTTTCTGTTTGCCAGTTTTTATCGTTAAAAAAGGGCAGCCTAATGCACGAAACATCTGGTAGTTCACATAGGATTTGGGGAATGGACACATACCTAGGGGATGTAGTATAGGCAGCGTACCTGACACCAGTTTTAGTTATTCAGTTTGACAATAAAGTTCATGGAAGACGTGTCTGTTGCATATCTTTCTAGTGTATTCATATATCTATTGCTTCTTACTCCTTACAATCAAGTTCTTCGTTTGTTGCTGGAATTCAGTGTCATTCGTCTATAATTTTGTAAACTTTTTTCGGGATCTTGTGTAGATGATGAACCTGGACAG</genome_strand>
        <mrna_strand>GAAGATGCTCATATTTTCAGTACCTCTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGAAGAGATGTGAAGCTCCTCCAAACAACTAACTTGGAGGAGGTTTTGAGTGACTCCTTTCAAGTTCTTAACGGAAAAAGACCCAAGCAAAAAGTGCAGCTTCTGGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAAAGAGGAGAAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAAGGGTTGCGCATCTGTTGTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGAGCCAGTTTTAAGGGCCGCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAG....................................................................................................................................................................................................................................................GTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAAGTTCAGTATGAAAGCATTGGGCTTTTCCTACGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAACCTGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462592" ref_strand="+" ref_description="SGN-E462592 [cPRO-12-K15]">
      <seq>gatcgtctcgtttacaaaaacaaaaaccagcatagaagatgctcatattttcagtacctcttaaaggtgcgaagagatgtgagactcctccaaacagctaacttggaggaggttttgagtgcctcctttcaagttcttaacggaaaaagacccaagcaaaaagtgcagcttttggaaagcctaaagaggagaagatctaatggtggcaaatataactttctggagcgtctttcaggggttgcacacctgttgtctcagatggttgagtcaatgttaagggccgctgcggagatatcaacacttcttgcacgttcattttttatgggattttcactgacagtattgtccttgctcgcccgaattagagttctagttcagcaaatgcttcttgatgttgtttgtgtattcaacaatgtctcctctttatctcagagggaacaagccataaaattgactcaagatggatttgaggtttttagagaatactttccgccaaagcagcaggtgatcttcctcgaatgtatatgggaatctgataagtatattttagttgagagacaaaatcagaaagatgtcggaagccaggaaaaggaggttggagaagatgtttctgtagaagcatctaaggttcagtatgaaagcattgagcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="82534" stop="78206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82234" g_stop="82169" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82168" i_stop="81412" i_length="757">
            <donor d_prob="0.750" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81411" g_stop="81299" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="179" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81298" i_stop="80685" i_length="614">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80684" g_stop="80606" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="258" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80605" i_stop="80033" i_length="573">
            <donor d_prob="0.972" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80032" g_stop="80004" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="287" r_length="29" r_score="0.828"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80003" i_stop="79510" i_length="494">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79509" g_stop="79416" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="381" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79415" i_stop="79023" i_length="393">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.539" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79022" g_stop="78933" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="471" r_length="90" r_score="0.933"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78932" i_stop="78689" i_length="244">
            <donor d_prob="0.714" d_score="0.94"/>
            <acceptor a_prob="0.858" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78688" g_stop="78506" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="654" r_length="183" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E462592" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82234" e_stop="82169"/>
          <exon e_start="81411" e_stop="81299"/>
          <exon e_start="80684" e_stop="80606"/>
          <exon e_start="80032" e_stop="80004"/>
          <exon e_start="79509" e_stop="79416"/>
          <exon e_start="79022" e_stop="78933"/>
          <exon e_start="78688" e_stop="78506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGTCTCGTTTACAAAAATAAAAACCAGCATAGAAGATGCTCATATTTTCAGTACCTCTTAAAGGTTGTATTTTTAACTATATTTTTTCATATATGTATGTGTAATGAGCTTATTCTAGTAGTTTCTTGTCCTATGATTTCTGTTATTATTCGTTGTTTCAGGTGCTTAGGTTACACATTATTTAGCTACTGCTATTGTTCCTTGTCTTTACTTTTGTTTGGTATGTGTTATTTGAACCAAGGGTATTTTAGAAACAACCTCTTTGCTTTGTGTTCTTTGAGTATGTTTCTGCCCTAAACTAAGAAAGGGTATAATGCTCGTTTTGATAAGAGTATTGCATACTATCTGCTGGAATGTTTTGGACGTCTTTCTTATGCAACTATGGGAATTTCTTCTAGTGCGCTACTATCTTTTACTACAGCTCATGGCTGTCCTTGAACTGGCCAAAGAGCTTTCTATTTGAATGGAATTCCACAATTTCATAAGATTCGATCTAGAATGATTATACTTTGGTTAATTGGTTAGGTGTCGATAGCAGCAGAACCTTTGTTTTGGTCTATACTATGCATAGGGGTACCTATGGCATTACTGGGTATGTTGTTGTTGTTGTTGTTGTAATGGGCTTTGCTTTGTTTTAAACACAAAGAACTGTCATAGAAGATGTTCCTATTTCCAATACCCCTCAAAGGTTGTTACCAAGGTTATTTCACATATGTATTATTTGCATTGGGTTTTGGGGGGGGGGGGGGGGAATTGATGGGGTTTGCTCTATGTCCTAAGTGCAAATGCTTAGTTTATATGTTCGTTTTGATGATATTAGGTGCGAAGAGATGTGAGGCTCCTCCAAACAACTAACTTGGAGGAGGTTTTGAGTGACTCCTTTCAAGTTCTTAACGGAAAAAGACCCAAGCAAAAAGTGCAGCTTCTGGAAAGGTACTCTTGACCCCTTTAAAGCACCTATATTTTGTTTTGAGATTTTGATTATTATAGTATTTCTAGTGATGATATGGCAAGAATGGAATTTGATTACGTCATAAATGTACCCACTTTTTCATATCTACCAATGAGTAAATTTTGATTGGAGAGTGAGTCCTTATCATACTCTTGACAGTTTTTTGTTCCTATATTGATAACTACCACTTTCTGCCATTGAAACAATTGAACTGACACACAGGGAAGCTTAAAACTTAAATTGTCTTCCTTTTTTATATGATTTTCATCAATAATCATCCATCTCTTTGTATGAAACTGTTTGCTGATTATGATTGTTGAATGCTGTTTGATTGCTAAAAATTGGGTGTTTATGTGAGCTATAACAACATTTTTGCAAGTTCCATCCATCTTATCATTAACCGACAGATTGGATGTTAATACTCTAACCAGTAAGAAGGGAGACTAGTTGTATTGATCCCAGTCCACTGTCATGGAAATAGAATTGCCATTATTTATGTCTTGCTCTTCATATACGAACTCCCACTGCCGCTGTTCTAACCTATGATGATTTTATATTAAATTGAACTTTCACCCTCATTTTTCATTGGCCTCAGCCTAAAGAGGAGAAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAGGTATCATTGTTTCTTTCATTATTACTTCTTGTTGTTCTGCACCTAAAACCGCTCATCCATGTCTCTAAGTAACTCATGTTAGCGAAGCTCACTTGCTATCATTTACTGGCAATATTCCCCTGTTTTCATGAATAAAAAGGGAAGCTTGGTGCACAAAACACTCTGTGTTCACATAAAGTCTTGGTAAGGGCCACATCCCGAAGGGGTGTAACATATGCTAATGCAAGCCTTAGTGGTCAATTCCACGCACGAACCTATGACCTATAGGCACACAGAGACACCTTATCATTGCTCCAAGATTCCATGTATACCAGTAGCACATGTTAGGACATGTGTTTAGAGTCTCTTAAGTATTGAATATAGTACTGAGATTCATGTAGCCGATCCTAATTCACCTAGTATTGATGCATAGTTATTGTTGTTCCATATAACAACAGGAATGATGATCTCTGTCTCTCTCTCTAATCAAGCATCTTAATATAGGGGGCTTAATAAGAATCATTTTACAAGGAGAACTTCAAGCTATCATCTTATAAAGTAGTAATTCCTAATTCACTTGTTTGTTTCTTGCAGATGGTTGAGCCAGTTTTAAGGGCCGCGTCGTATCCTTCTTACTTCTTTTTTGCGCACTAATCCTTCATTTTTTATGTTGTTTATGGGACAAGATTTACTTAAATAATAGGAAGAGATTAAGTTGTTCATTTTCTTTCATAGCTCTTTGGGTGTGTTAGGTGATTGGAATAAATGAGGTTATGTTTTGAAATACAGTGAGTGCTTATTTAGCTACATATAACAAAACCTTTTCTGTTCTACAAATTACTAGAGTTCTGCACAGCTGATTTGCCGTAAACATATCGGTTTGATAAATTGGTGTTGTTGGATATTAATAGTACTTCCTTTCTTCCTTGTTTTTTTCCATATATTCATAATTGCACATGTCCTATCTTCGTCTCATTTGGTAAGATGACTTTGTTTTTCATCTGTGCTGATTGCTTTTCATTTCAAAGTAAACACTTGATCAATGTTCCTGTTTTATGTAAATTCCAATGTGGATTTTTAGCCATTAATGATTGTTTCTACCCTTAACAGTAGACAGGGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAAGTAAGTATTCTCAGTGTGATTTTATCATTTTCAGAACTGTGAAATGGTATGTGCACTCATGAAGAATGACACCATTTTAAAGCTCATTCCTTCGTCATACTTCTTATAGTAAAGGTCTTGCACATGGATTGCGTTCTTTTGAAATTTGAGTTTGTTGAAGTTTTAGTTTCCAGTATAATACACTGGAGTCATGTTAGTTTCTGGAGCTTATTATATGGAGTAACTAGTCTAACTCAAGAGTCAAGGGTACTGGGTCATGTATGACATGGGACTTTTTGCTCTTCTAGGAGCATTCAATATTTAAGGAGTTGTAAATCTTATGCTGAGCAAATTTTCTAAGGATATCTAGTGATTGAACAGGACATTTAATCAAAATTTCTCTATTTATTGCAGATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAGGTTGTTTCTTTGCTACTGACCACTCTCTGTTTTTCTGATGCAATGGAAGAAATTCTTTTCCTTCCTTATATTCGCTTTGTTTACTAGCTTTTTTGATTGGTTTTTAATTAGTTCTGTTAAGGTCAAGAAATGGTTGGTAAAGTTATGTTGAGATAGGAAAATTGATAGTACTTCCTTGATAGTCGTTAATAACAACTCTAAGATGAAATCAAAGAAGCAAATGTTCAATAATTTGGCATTGCAGGTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTC</genome_strand>
        <mrna_strand>GATCGTCTCGTTTACAAAAACAAAAACCAGCATAGAAGATGCTCATATTTTCAGTACCTCTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGAAGAGATGTGAGACTCCTCCAAACAGCTAACTTGGAGGAGGTTTTGAGTGCCTCCTTTCAAGTTCTTAACGGAAAAAGACCCAAGCAAAAAGTGCAGCTTTTGGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAAAGAGGAGAAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGTCTTTCAGGGGTTGCACACCTGTTGTCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGAGTCAATGTTAAGGGCCGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATCAACACTTCTTGCACGTTCATTTTTTATGGGATTTTCACTGACAGTATTGTCCTTGCTCGCCCGAATTAGAGTTCTAGTTCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTCTTGATGTTGTTTGTGTATTCAACAATGTCTCCTCTTTATCTCAGAGGGAACAAGCCATAAAATTGACTCAAGATGGATTTGAG....................................................................................................................................................................................................................................................GTTTTTAGAGAATACTTTCCGCCAAAGCAGCAGGTGATCTTCCTCGAATGTATATGGGAATCTGATAAGTATATTTTAGTTGAGAGACAAAATCAGAAAGATGTCGGAAGCCAGGAAAAGGAGGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGAGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570719" ref_strand="+" ref_description="SGN-E570719 [15348]">
      <seq>atttccttagcccatttctcagacgaattcaacccgaacacctattgctccgtcgctcggagcacactagtcgccggtcgacgatcgccgccgccgccgccataagtatttttactgtctacttagtttctaaatttatgaagtcttattatagtttttctctgttacagctgaaattatgggctccgagatggaagtagttgagcagaggctaaatacttttgtaagtcagctccatacagagtttgccattctcgatcgtctcgtttacaaaaacaaaaaccagcatagaagatgctcatattttcagtacctcttaaaggtgcgaagagatgtgagactcctccaaacagctaacttggaggaggttttgagtgcctcctttcaagttcttaacggaaaaagacccaagcaaaaagtgcagcttttgggaagcctaaagaggagaagatccaatggtggcaaatataactttctggagcgtctttcaggggttgcacacctgttgtctcagatggttgagccaatgttaagggccgctgcggagatatcaacacttcttgcacgatcattttttatgggattttccactgacagtgttgtccttggctctcccgaattagagttctagttcagcaaatgcttcttgatgttggtcgtgtattccaccatgtctcctctttaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="82794" stop="79114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82494" g_stop="82169" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82168" i_stop="81412" i_length="757">
            <donor d_prob="0.750" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81411" g_stop="81299" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="435" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81298" i_stop="80685" i_length="614">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80684" g_stop="80606" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="514" r_length="79" r_score="0.924"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80605" i_stop="80033" i_length="573">
            <donor d_prob="0.972" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80032" g_stop="80004" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="543" r_length="29" r_score="0.862"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80003" i_stop="79510" i_length="494">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79509" g_stop="79416" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="639" r_length="96" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E570719" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82494" e_stop="82169"/>
          <exon e_start="81411" e_stop="81299"/>
          <exon e_start="80684" e_stop="80606"/>
          <exon e_start="80032" e_stop="80004"/>
          <exon e_start="79509" e_stop="79416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTTAGCCCATTTGTCAGACGAATTCAACCCGGAAACCAATTGCTCCGCCGCTCGGAGCACACTAGTCGCCGATCGCCGCCCGTCGCCCGCCGCCGCCGCCGCAAGTATTTATACTGTCTGCTTAGTTTCTGAATTTATGAAGTCTTATTGTAGTTTTTCTTTGTTACAGCTGAAATTATGGGCTCAGAGATGGAGATAGTCGAGCAAAGGCTAAACACTTTTGTAAGTCAGCTGCAGACAGAGTTTGCCATTCTCGATCGTCTCGTTTACAAAAATAAAAACCAGCATAGAAGATGCTCATATTTTCAGTACCTCTTAAAGGTTGTATTTTTAACTATATTTTTTCATATATGTATGTGTAATGAGCTTATTCTAGTAGTTTCTTGTCCTATGATTTCTGTTATTATTCGTTGTTTCAGGTGCTTAGGTTACACATTATTTAGCTACTGCTATTGTTCCTTGTCTTTACTTTTGTTTGGTATGTGTTATTTGAACCAAGGGTATTTTAGAAACAACCTCTTTGCTTTGTGTTCTTTGAGTATGTTTCTGCCCTAAACTAAGAAAGGGTATAATGCTCGTTTTGATAAGAGTATTGCATACTATCTGCTGGAATGTTTTGGACGTCTTTCTTATGCAACTATGGGAATTTCTTCTAGTGCGCTACTATCTTTTACTACAGCTCATGGCTGTCCTTGAACTGGCCAAAGAGCTTTCTATTTGAATGGAATTCCACAATTTCATAAGATTCGATCTAGAATGATTATACTTTGGTTAATTGGTTAGGTGTCGATAGCAGCAGAACCTTTGTTTTGGTCTATACTATGCATAGGGGTACCTATGGCATTACTGGGTATGTTGTTGTTGTTGTTGTTGTAATGGGCTTTGCTTTGTTTTAAACACAAAGAACTGTCATAGAAGATGTTCCTATTTCCAATACCCCTCAAAGGTTGTTACCAAGGTTATTTCACATATGTATTATTTGCATTGGGTTTTGGGGGGGGGGGGGGGGAATTGATGGGGTTTGCTCTATGTCCTAAGTGCAAATGCTTAGTTTATATGTTCGTTTTGATGATATTAGGTGCGAAGAGATGTGAGGCTCCTCCAAACAACTAACTTGGAGGAGGTTTTGAGTGACTCCTTTCAAGTTCTTAACGGAAAAAGACCCAAGCAAAAAGTGCAGCTTCTGGAAAGGTACTCTTGACCCCTTTAAAGCACCTATATTTTGTTTTGAGATTTTGATTATTATAGTATTTCTAGTGATGATATGGCAAGAATGGAATTTGATTACGTCATAAATGTACCCACTTTTTCATATCTACCAATGAGTAAATTTTGATTGGAGAGTGAGTCCTTATCATACTCTTGACAGTTTTTTGTTCCTATATTGATAACTACCACTTTCTGCCATTGAAACAATTGAACTGACACACAGGGAAGCTTAAAACTTAAATTGTCTTCCTTTTTTATATGATTTTCATCAATAATCATCCATCTCTTTGTATGAAACTGTTTGCTGATTATGATTGTTGAATGCTGTTTGATTGCTAAAAATTGGGTGTTTATGTGAGCTATAACAACATTTTTGCAAGTTCCATCCATCTTATCATTAACCGACAGATTGGATGTTAATACTCTAACCAGTAAGAAGGGAGACTAGTTGTATTGATCCCAGTCCACTGTCATGGAAATAGAATTGCCATTATTTATGTCTTGCTCTTCATATACGAACTCCCACTGCCGCTGTTCTAACCTATGATGATTTTATATTAAATTGAACTTTCACCCTCATTTTTCATTGGCCTCAGCCTAAAGAGGAGAAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAGGTATCATTGTTTCTTTCATTATTACTTCTTGTTGTTCTGCACCTAAAACCGCTCATCCATGTCTCTAAGTAACTCATGTTAGCGAAGCTCACTTGCTATCATTTACTGGCAATATTCCCCTGTTTTCATGAATAAAAAGGGAAGCTTGGTGCACAAAACACTCTGTGTTCACATAAAGTCTTGGTAAGGGCCACATCCCGAAGGGGTGTAACATATGCTAATGCAAGCCTTAGTGGTCAATTCCACGCACGAACCTATGACCTATAGGCACACAGAGACACCTTATCATTGCTCCAAGATTCCATGTATACCAGTAGCACATGTTAGGACATGTGTTTAGAGTCTCTTAAGTATTGAATATAGTACTGAGATTCATGTAGCCGATCCTAATTCACCTAGTATTGATGCATAGTTATTGTTGTTCCATATAACAACAGGAATGATGATCTCTGTCTCTCTCTCTAATCAAGCATCTTAATATAGGGGGCTTAATAAGAATCATTTTACAAGGAGAACTTCAAGCTATCATCTTATAAAGTAGTAATTCCTAATTCACTTGTTTGTTTCTTGCAGATGGTTGAGCCAGTTTTAAGGGCCGCGTCGTATCCTTCTTACTTCTTTTTTGCGCACTAATCCTTCATTTTTTATGTTGTTTATGGGACAAGATTTACTTAAATAATAGGAAGAGATTAAGTTGTTCATTTTCTTTCATAGCTCTTTGGGTGTGTTAGGTGATTGGAATAAATGAGGTTATGTTTTGAAATACAGTGAGTGCTTATTTAGCTACATATAACAAAACCTTTTCTGTTCTACAAATTACTAGAGTTCTGCACAGCTGATTTGCCGTAAACATATCGGTTTGATAAATTGGTGTTGTTGGATATTAATAGTACTTCCTTTCTTCCTTGTTTTTTTCCATATATTCATAATTGCACATGTCCTATCTTCGTCTCATTTGGTAAGATGACTTTGTTTTTCATCTGTGCTGATTGCTTTTCATTTCAAAGTAAACACTTGATCAATGTTCCTGTTTTATGTAAATTCCAATGTGGATTTTTAGCCATTAATGATTGTTTCTACCCTTAACAGTAGACAGGGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTT-CGCTGACAGTATTGTCCTTG-CTTGCCCGAATAAGAGTTCTAGTTCAGCAA</genome_strand>
        <mrna_strand>ATTTCCTTAGCCCATTTCTCAGACGAATTCAACCCGAACACCTATTGCTCCGTCGCTCGGAGCACACTAGTCGCCGGTCGACG---ATCG-CCGCCGCCGCCGCCATAAGTATTTTTACTGTCTACTTAGTTTCTAAATTTATGAAGTCTTATTATAGTTTTTCTCTGTTACAGCTGAAATTATGGGCTCCGAGATGGAAGTAGTTGAGCAGAGGCTAAATACTTTTGTAAGTCAGCTCCATACAGAGTTTGCCATTCTCGATCGTCTCGTTTACAAAAACAAAAACCAGCATAGAAGATGCTCATATTTTCAGTACCTCTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGAAGAGATGTGAGACTCCTCCAAACAGCTAACTTGGAGGAGGTTTTGAGTGCCTCCTTTCAAGTTCTTAACGGAAAAAGACCCAAGCAAAAAGTGCAGCTTTTGGGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAAAGAGGAGAAGATCCAATGGTGGCAAATATAACTTTCTGGAGCGTCTTTCAGGGGTTGCACACCTGTTGTCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGAGCCAATGTTAAGGGCCGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATCAACACTTCTTGCACGATCATTTTTTATGGGATTTTCCACTGACAGTGTTGTCCTTGGCTCTCCCGAATTAGAGTTCTAGTTCAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200003" ref_strand="+" ref_description="SGN-E200003 [cLEB-9-E17]">
      <seq>gcacgaggttttaagggccgcgtcgtatccttcttacttcttttttgcgcactaatccttcattttttatgttgtttatgggacaagatttacttaaataataggaagagattaagttgttcattttctttcatagctctttgggtgtgttaggtgattggaataaatgaggttatgttttgaaatacagtgagtgcttatttagctacatataacaaaaccttttctgttctacaaattactagagttctgcacagctgatttgccgtaaacatatcggtttgataaattggtgttgttggatattaatagtacttcctttcttccttgtttttttccatatattcataattgcacatgtcctatcttcgtctcatttggtaagatgactttgtttttcatctgtgctgattgcttttcatttcaaagtaaacacttgatcaatgttcctgttttatgtaaattccaatgtggatttttagccattaatgattgtttctacccttaacagtagacagggagatatccacacttcttgcacgatcattttttatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="80324" stop="79170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80026" g_stop="79470" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E200003" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80026" e_stop="79470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCA-GTTTTAAGGGCCGCGTCGTATCCTTCTTACTTCTTTTTTGCGCACTAATCCTTCATTTTTTATGTTGTTTATGGGACAAGATTTACTTAAATAATAGGAAGAGATTAAGTTGTTCATTTTCTTTCATAGCTCTTTGGGTGTGTTAGGTGATTGGAATAAATGAGGTTATGTTTTGAAATACAGTGAGTGCTTATTTAGCTACATATAACAAAACCTTTTCTGTTCTACAAATTACTAGAGTTCTGCACAGCTGATTTGCCGTAAACATATCGGTTTGATAAATTGGTGTTGTTGGATATTAATAGTACTTCCTTTCTTCCTTGTTTTTTTCCATATATTCATAATTGCACATGTCCTATCTTCGTCTCATTTGGTAAGATGACTTTGTTTTTCATCTGTGCTGATTGCTTTTCATTTCAAAGTAAACACTTGATCAATGTTCCTGTTTTATGTAAATTCCAATGTGGATTTTTAGCCATTAATGATTGTTTCTACCCTTAACAGTAGACAGGGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGA</genome_strand>
        <mrna_strand>GCACGAGGTTTTAAGGGCCGCGTCGTATCCTTCTTACTTCTTTTTTGCGCACTAATCCTTCATTTTTTATGTTGTTTATGGGACAAGATTTACTTAAATAATAGGAAGAGATTAAGTTGTTCATTTTCTTTCATAGCTCTTTGGGTGTGTTAGGTGATTGGAATAAATGAGGTTATGTTTTGAAATACAGTGAGTGCTTATTTAGCTACATATAACAAAACCTTTTCTGTTCTACAAATTACTAGAGTTCTGCACAGCTGATTTGCCGTAAACATATCGGTTTGATAAATTGGTGTTGTTGGATATTAATAGTACTTCCTTTCTTCCTTGTTTTTTTCCATATATTCATAATTGCACATGTCCTATCTTCGTCTCATTTGGTAAGATGACTTTGTTTTTCATCTGTGCTGATTGCTTTTCATTTCAAAGTAAACACTTGATCAATGTTCCTGTTTTATGTAAATTCCAATGTGGATTTTTAGCCATTAATGATTGTTTCTACCCTTAACAGTAGACAGGGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273101" ref_strand="+" ref_description="SGN-E273101 [cLEM-24-I21]">
      <seq>tgctccgccgctcggagcacactagtcgccgatcgccgcccgtcgcccgccgccgccgccgcaatttttctttgttacagctgaaattatgggctcagagatggagatagtcgagcaaaggctaaacacttttgtaagtcagctgcagacagagtttgccattctcgatcgtctcgtttacaaaaataaaaaccagcatagaagatgctcatattttcagtacctcttaaaggtgcgaagagatgtgaggctcctccaaacaactaacttggaggaggttttgagtgactcctttcaagttcttaacggaaaaagacccaagcaaaaagtgcagcttctggaaagcctaaagaggagaagatctaatggtggcaaatataactttctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="82749" stop="80339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82449" g_stop="82390" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82389" i_stop="82340" i_length="50">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82339" g_stop="82169" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="232" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82168" i_stop="81412" i_length="757">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81411" g_stop="81299" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="345" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81298" i_stop="80685" i_length="614">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80684" g_stop="80639" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="391" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E273101" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82449" e_stop="82390"/>
          <exon e_start="82339" e_stop="82169"/>
          <exon e_start="81411" e_stop="81299"/>
          <exon e_start="80684" e_stop="80639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCGCCGCTCGGAGCACACTAGTCGCCGATCGCCGCCCGTCGCCCGCCGCCGCCGCC-GCAAGTATTTATACTGTCTGCTTAGTTTCTGAATTTATGAAGTCTTATTGTAGTTTTTCTTTGTTACAGCTGAAATTATGGGCTCAGAGATGGAGATAGTCGAGCAAAGGCTAAACACTTTTGTAAGTCAGCTGCAGACAGAGTTTGCCATTCTCGATCGTCTCGTTTACAAAAATAAAAACCAGCATAGAAGATGCTCATATTTTCAGTACCTCTTAAAGGTTGTATTTTTAACTATATTTTTTCATATATGTATGTGTAATGAGCTTATTCTAGTAGTTTCTTGTCCTATGATTTCTGTTATTATTCGTTGTTTCAGGTGCTTAGGTTACACATTATTTAGCTACTGCTATTGTTCCTTGTCTTTACTTTTGTTTGGTATGTGTTATTTGAACCAAGGGTATTTTAGAAACAACCTCTTTGCTTTGTGTTCTTTGAGTATGTTTCTGCCCTAAACTAAGAAAGGGTATAATGCTCGTTTTGATAAGAGTATTGCATACTATCTGCTGGAATGTTTTGGACGTCTTTCTTATGCAACTATGGGAATTTCTTCTAGTGCGCTACTATCTTTTACTACAGCTCATGGCTGTCCTTGAACTGGCCAAAGAGCTTTCTATTTGAATGGAATTCCACAATTTCATAAGATTCGATCTAGAATGATTATACTTTGGTTAATTGGTTAGGTGTCGATAGCAGCAGAACCTTTGTTTTGGTCTATACTATGCATAGGGGTACCTATGGCATTACTGGGTATGTTGTTGTTGTTGTTGTTGTAATGGGCTTTGCTTTGTTTTAAACACAAAGAACTGTCATAGAAGATGTTCCTATTTCCAATACCCCTCAAAGGTTGTTACCAAGGTTATTTCACATATGTATTATTTGCATTGGGTTTTGGGGGGGGGGGGGGGGAATTGATGGGGTTTGCTCTATGTCCTAAGTGCAAATGCTTAGTTTATATGTTCGTTTTGATGATATTAGGTGCGAAGAGATGTGAGGCTCCTCCAAACAACTAACTTGGAGGAGGTTTTGAGTGACTCCTTTCAAGTTCTTAACGGAAAAAGACCCAAGCAAAAAGTGCAGCTTCTGGAAAGGTACTCTTGACCCCTTTAAAGCACCTATATTTTGTTTTGAGATTTTGATTATTATAGTATTTCTAGTGATGATATGGCAAGAATGGAATTTGATTACGTCATAAATGTACCCACTTTTTCATATCTACCAATGAGTAAATTTTGATTGGAGAGTGAGTCCTTATCATACTCTTGACAGTTTTTTGTTCCTATATTGATAACTACCACTTTCTGCCATTGAAACAATTGAACTGACACACAGGGAAGCTTAAAACTTAAATTGTCTTCCTTTTTTATATGATTTTCATCAATAATCATCCATCTCTTTGTATGAAACTGTTTGCTGATTATGATTGTTGAATGCTGTTTGATTGCTAAAAATTGGGTGTTTATGTGAGCTATAACAACATTTTTGCAAGTTCCATCCATCTTATCATTAACCGACAGATTGGATGTTAATACTCTAACCAGTAAGAAGGGAGACTAGTTGTATTGATCCCAGTCCACTGTCATGGAAATAGAATTGCCATTATTTATGTCTTGCTCTTCATATACGAACTCCCACTGCCGCTGTTCTAACCTATGATGATTTTATATTAAATTGAACTTTCACCCTCATTTTTCATTGGCCTCAGCCTAAAGAGGAGAAGATCTAATGGTGGCAAATATAACTTTCTGGAG</genome_strand>
        <mrna_strand>TGCTCCGCCGCTCGGAGCACACTAGTCGCCGATCGCCGCCCGTCGCCCGCCGCCGCCGCCG..................................................CAATTTTTCTTTGTTACAGCTGAAATTATGGGCTCAGAGATGGAGATAGTCGAGCAAAGGCTAAACACTTTTGTAAGTCAGCTGCAGACAGAGTTTGCCATTCTCGATCGTCTCGTTTACAAAAATAAAAACCAGCATAGAAGATGCTCATATTTTCAGTACCTCTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGAAGAGATGTGAGGCTCCTCCAAACAACTAACTTGGAGGAGGTTTTGAGTGACTCCTTTCAAGTTCTTAACGGAAAAAGACCCAAGCAAAAAGTGCAGCTTCTGGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAAAGAGGAGAAGATCTAATGGTGGCAAATATAACTTTCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716002" ref_strand="+" ref_description="SGN-E716002 [FB15DD10]">
      <seq>gttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtaatgaataaaatctattgtgttaccttttggctgtttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91968" stop="69"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91668" g_stop="90874" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90873" i_stop="83650" i_length="7224">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83649" g_stop="83636" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="808" r_length="14" r_score="0.786"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E716002" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91668" e_stop="90874"/>
          <exon e_start="83649" e_stop="83636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGTGTTACCTTTTGGCTGTTTCATATTTATTCTTTTTTTTTTTTGATCTATTTTGATTTCATAGTTGGAAAATTACGTGATTAATCATACTTATAGTAGTTAATTACCTAACATGGCTACAATTTGTATTAATTACAATTCGAAACTTACTTCTAGCTATAATTGCATTCCCATCTCTCTCTCCCTCTCTCAAGAATCTCGCTCACAACTCTTTTTTTTTTGAGTCATATATCCTTGCAAGTCTCTCTCGGTTCTCTTCTATCAGTGTCTCTTTTACTTTATACAAGCAAAAATTATACAAATATATAATTTTTGTTCGTGTTTGTATTAAGTGAGAGAGAGACCGGATATGCAAATACAAAATATATCTCTTTGCCCTATACACTTGTATTTTTTATACAAATACAATTCTCTCCCTGCCTAGTTCTCTCTCTCTCTCTCTCTTTTTCTTTCTCTCTCGCTTTATACAAACACAAATTACATCATTGATACATATACATAGTAGTATACAAATACAATTTATCTCACTCCACTTCCGCCCACTCTAGCTCATCTCTCTCCTGCCTTTCTCAATCTCGCACGCCACTCTCCTTTCTCTAACATGTAGCTACAAATAGTAATTAGCATATTATAGTTATGAAGCATAATTAAATTGTTTTTGAGTAGCTATATGTGAAAATTCTTAATTTTTGAGTGGCTAGCTATAAATCTTTTCTAATTTTTTGTTCAAATATTCGATCAAAGTTGATGATAATTTGAATATTAGCAAATTTAAGAAAATATCAATATATTTTGCCTAAAGTTTATTGCCATACAAATATAATCACATAACAAAGAATTAATACATAATTAACTTATTGTGAAATGAGGTCTTGGGCCTAACTCACATCCTAAAAGCTAGCTCAAATTAGTATAAAATTTTTGTTATTCTTTAACTACGTCACCTTGCACCCGTTGCCTAACATCTAGTGCATAGACAATTTAATTTTGGGGCCCGAACATTGAGTGAGATTGACCGACTTTGATATCATGTGAAATTAGATTTTGAGCTCAGCTTACACCTCAAAAATTAGCTTAAAGGGAGGAAGATTGTCCAAATCTTATAAGGACTTCACCATCTCAATAACCACTAGTGTGGATTTTTGTCATTTTTTAACAATTCTTATCAACATATCCGAAATAAGCAATATTGCAATGCAATATAGCTATGGGGCGTAATTATTGAAACTATAACTATAAAGCCTTATTATGTTTAGTATATTTGTTGTTTCTCAATATACACCGAGTATACATGAAAAATATTTCGACTATTTAATTTTGATCAACTTAGAAGAACCTTTTAAACAATTCCAAAATTTTAATATGAAAATTCTCTTAGATATTTCGAGTGCTCGAAAAAATTGGAAGAAGAAACTGACACGACAATGATATCTCTTGCTAGCTTAACAATAATATAAAAAGTGTTTGTTAATATTTGTAGTTGAATTAGTTATATTAGAATAGATTTATCTGAATTAGATTCTTTTTGAAGTATAAATCTAACCAAGAAGGCAAATGAAATAATTGGACAAACTCACCTTATGATACATTTTATAGAGTATTTAACGAAAGTGAAAAGACTAATCAGAATAAATATCATTAAGAAGATTAAACTATGTACAACTAATAATAACAAAGAAATTTTATATTCTAAAATATGAGTGAAGAATGTAAAAAGAAGATACAATTACACACAAGAATTATAGGAATAGTAAATAAAAAATTTTCTTGGCAAAGTTAAATTTATAGAATAAAATTACAGAAATATGAAAAGACACGTGAAAAATTGAAAGGTCAAATATTATTAAAATAAATATAAAAAAGATAGAGATGAAATTTAACTTTAAAAGATACATGAATCTACTTTAATTTCTTGTCTTTAAAGAATAATTACTTATTTGTATTTTTTAAAATTTGTGTGAGAAATTTGAAAGGTTCAAGATTTTGAAATGAGAATAAGAAGATTATATGAAAATTATAAAAGTTTTAATTTAGTAGAGGGGCAAAATAGTAATTCAATTTTTTACTTTGCAGCTTTCCATTTATAATATGATACTAGTATTATTATAAGTGGGAAGAACTCAAGTCAAAAGTTGAATTACGATTTTACCCTCCCTATAAATTAAAATGTTATAATTAGTTTAATTAAATAATAATAACTTTTGAATTTTGTTAGATTAATTCCTATTATTATTATTGTTGTTGTTGTTGTTGTTGTTGTTATTATTATTATTAAAAGTGAAAAAAGCTTTTAGCTTCAAAATTGATTACCATTTTACCCCTACTGTAAGTAAAAATGTTATAAAATATTTAATTAGTCAAATATTAGAATTCTCAATAAGTTTTTTCTAATATATATTTGTATTTCAAATTTTTATGCAACCTATAATTACAATATTTAATATGTATTAACCTCTCACAATTGAATTATTATTATTATTATTATTAATTATGATAAAAAATCTTATTCTGCATACCTTAACTATAAGTTAAATAAAATTCATTTAATTAATTTTTCAGTTACATAAATTGAACGGGATTTGAAAGTGGAAAAGTGATTGTTTAATGTCCAGAGTCATACATGATTAATTGCTTTAAATTAACACATCATGTATTACTTTACCAAACTCTTTCAATTCCTATAATTTGTCTTCTGATTTTCTTAATTTGTCTCATCAAATTCTAACACTTTTAATTTAGTAACCAATCTTTATTAATAAACATCAGTAGAACTTGAATAGTTCATTAAGTATTTAAGTGTAAGTTAATTAGTATTATGTCAAAAGAAATTTGAAAGAACATAAAAAAACACTATATAAAGGAAACAAATGATTTTCATTTCCTTCAAGTTTTATTTCTTTAGTTAAACATCTAACACCCCTTCTAAATTTCTTTCTTTTCCCTTAAATTTTTTCGTTTGCATGAACTAAAGAAAATGGGAATGAAGAAACATGTAGAGTTGATAAATGTTGGAATTAAATGATTGTCATATCAATTTACATGCAACACTCAACATTCATTGAATGATATATGAAGATTACTTAGTCCTTAAGGAGTGCTAGCAGAAATTCATGAGCTATGAAAAGGAGGAAATTGATTTCTTTGGAATACTGATTTTAAAATTTTCATTAATTGATTTTATTCTTATAATGTACTGTAATTATAATTGCTTGAGACTATAGATAAAATGCTATGTTATTTGTGTATTTGGAAGGAGTTATAAAAATGATATCTTGTAGTATGCCTTCATGGCATCATGTGATTGGTATTGAAAAATTATATTGTAACTTTTTTTGTATTTTGTAATGTTTCTTTATATGTATCTTCATATTGGAACTTACTAATTTATTTTACAAAAGAATTAGGAGCATATGCATCATAAATAAATATAGTATCAAACTTTTTAAAGGAAAATTTTCTTTCATTTTGATAAAAACTATTTTAGCTACTACAAGATATAGGGATCTTCAGTTAAATAGTCGGATATATTTACTATTACTTTTTTTAGCCTATATATATATACTAGTTTTCGAGCACGCGCTTTGCGTGTGTAACCCATGAGTGTATTATTTCTTAAAAGATAATATTACTAAATAATAAAATGTCTAATTGAGATTTTTTACTTTGTTTTACTACTAATTGTGACACTCCAATTTTCTGACCTCCAAGTGAATGCATCAAGATAATAATACGAGAAATTAATAAAATAAACTTTGTTTGTAATTAAAAAAATAAGTTTGCAAAGCTAAAAGGAAAAATAACAACTATCTAAATTAAATTTCTTGATAGTTCTTTTTTATTGGTAGAATAATGCTAGATAGTGTAAGATTAACTTTGAGTGAATTAAAAACAAAACCTTTCATCTTTATTAATTGAATGTGTTTTATGTATTGTATTAAATTTTTTATCCACAAACACTTTTAAACTAATTTTTTAACTATAAATATTTAAAATTATTATGTAAAAAGTTTTATCATTTTATATTTATAATATTCTTGAATTTTATGATTAACTACTATTTTTATTTATATTTTATTTCTGTCATACATAACTTAATCCATCATTAATCTATAATTATATGTTTTTGCCCTTTTTTTTTCTTTAAATGACTTGTTTTTAAGTAACATTCTTAATTTTATTTCTTTTTTTTCTTAAGATATAATTTTTTGTTTTTTATTTTTTATTATTTTCCCTTATTTTATAAATCTAATTTTTATTAATTTATCTATATATTTTTTGTTTTTTTTTTTGTTTTTCTTTCTTATTTCACCTTGACCTTTTTTTACTTTTCAAAATTTTTTATATTGACCTTTCAATCATTTTTGTTTTTTTATATTAATATCCTCACCTTTAAGAATAAATCATTACTATATTTTCCATTTATAATTTCTTTTTACAAATTTTTTATTTCATTATTTATATTATTTTGTTTCCTAATTTCCTCTTTTTAAATTGGACTATTTACTTACATCTTCTCCTTCCTTGTTATTCATCTGATATTCATTTTAATCTTCCTCTAACTTTAATTTGTACTTATTTTCTTTCATTCTCGTTTTGAATTCTATCGTACTCTCTATGTTTTTTTTTATCTAGCTACATCTGTTCCATCAATTCTTCTTTTTTTTCATTTCTCTTTATTTCTCCATCTTTATTAATTCTCCTTTCCATATATTTTTCTTGTTCTCAACATTATCTCATTTATCATCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCGGGCCGGGGGCAAGTTATTTTTCGTTTTATATTTTGTATAGGACCAAAATAAAAGTGAGAAAATTTTTTTTTTTTTCGAGGTTTTGGGGGTTCCTCCATTTTTTTTTATGACGTTAAAAGTTTTAAACATAAGGTATATTTCCTTTCCTTAAGGATTTAAAAAAGGATTTTGGTAATTAACTAAATAAATTAAAGTTTTTAAAAATCCCAATTATTATGAATTTAAACCAGCAAAAAAACAACAGGAGGTAAATATTTTTTGCTTTGCTTGCAAAAGGTAATTTTTATTTACTAAGGTTAAAATAAAATAAAGGGAAAAAATGTTGGATATACCTTTCAACTTTGTCATTGGGAGCTGATATACCTCTTGTATAAAAAGTGGTTCATATATGCCCTTACCGTTATATAAACGGCTCACATATACCCCTGCCGTTACAAAATGACTCACAATATATCCTCCATTTAACGGAAGTTAAAAAATTAGTTTTAAATTTATATTTATTACTTCTAATTTTTTTTTTTAAAAATGACTTAGGGGTATATATGATTCTTCTATCAAAGTTCAAGGTATATTTTAATTTTTTTTCATACATAAATTATTTTTTGACTTCTTTTATTATAATTTTTGAATTTGTTATTCTTATTTTGTTTTTTTCTTTCATTCCTTAGTTTAAAGAATAAAAAATTAAACTATTTTTTTTTTGTGTATTGTAATTTAATTTCGTATTCAAAGAAAAAATTTGATCATCTACAATAAATTTTATAAGAATATTAGTGAAACATAAATAAATTTGATTATCAAAATAATTATTATAAATTAGTCATTGAAACAAAAAAAGGTAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAGTAATAAAAATTTAGATTAAAATTATTTTTTTTATTTCCGTTAGAGGAAAAGGGTATATGTGAGCCATTTGTTTAAAGGTATATATGAGTCACTTTCATAACAAGGGGTATATCAGCTCTAAATGACAAAATTGAAGGGTATATCAGACCCTTTTCCCTAAAATAAAAAACATCATAATGTATTGGTCCCCGTTGGGTTTGTTAAGGTAGTTATACAATTAGTTAATTAATTTAATTTCTGAATTATAAACTGCCTTTAGGTGAAATAGCTTTTTCACTTTTATAAATTATTATATGATAAATTAATCAAAATAATAACTACTACACTCACTTGTTGCGTTCTTGTTTGATGAGATATTGATTGATCAATTTTTTAAAGTTGGTGTTAGCTAAAATTAAAAGCAAAAAAATGGAATAAGAGATAAATTAAACAACGTATGAACCAAATATGGATATTATTATTTTTTTAATTTTTTTTAATGGTTGGTGAAGAATATAACAATATCTATATTAATGAGGTTTGCATATTGAATATTGATAAATCACCTTTCTATGCATAATTTAGGCGGAGCTAGAATTAAGCCAATACGAGTTCAATTAAATTTAATAAATTCAATTCAAATTTATTGTCTCTTTGTGCGTAATTATGGCGAAGCTAAAATTAAGATCAAATACGAGTTTGATATATATAATTTAATAGTTTTGATCCAAATTCATTACTTTCGATGTGTAATTGCTAAAAGGTCAGACATGAATTTGATCATATTCAATAACTTTTAATATTTATATTAATAAATTCACATAAATATATATAAAAATTAAACAGAAGACTATGAGTCATGACATAGATGACTTTTTAAATGTCTTATTTTAGTTTGGTTTTGAGATAAAGATGCGACAACCATAGAGTATCTTTCTCATTTTAACTAACAACTTCTAATAATAATAATAATAATAATAAATAAAAGATAATTACACGAAATTAATACATATACATCATATATTTAAATTTATAGTTCATTTTACTTTACTAAATCATAATAAATGAATATTACATTGACTTGATATAAAATCTAATGCGAAATAAAAGCTTATAATATACAAGCATATTTTTCATTTATAAAAATAAAATAAAATTGAGCCACCCCATCAAGCCATATTTTGAAGCTTTATAAGTTTACCTTAACATAGATTAATCTTTAATTTTACTTACAAAATGCATTGATTTTACTAATATTTACCATTTAATAACTAAACTTTTAATTGTGAGGATATATACCATCTAATCGTGATATTTTTCATAGCAATCTTTATTTATATGTATAAAAATAATTTTCATAACTTATGATTAGGGGATAGTGAAAGTAACATATATTATTTGAAAATTATGTTATGAATATTATAAATCACAGCTTATAAAATTTAAAAACATATCAAAAATTTATGAGACTTTCGAAATTTTACAAATATCACATGTAAATTGGAATAGGAAATAACAAAAAA</genome_strand>
        <mrna_strand>GTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTAATGAAT-AAAATCTATTGTGTTACCTTTTGGCTGTTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247704" ref_strand="-" ref_description="SGN-E247704 [cLEF-42-C12]">
      <seq>tattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaatacaaatctattgtgttaccttttggctgtttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91773" stop="69"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91473" g_stop="90871" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90870" i_stop="83650" i_length="7221">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83649" g_stop="83636" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="617" r_length="14" r_score="0.786"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E247704" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247704" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91473" e_stop="90871"/>
          <exon e_start="83649" e_stop="83636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGTGTTACCTTTTGGCTGTTTCATATTTATTCTTTTTTTTTTTTGATCTATTTTGATTTCATAGTTGGAAAATTACGTGATTAATCATACTTATAGTAGTTAATTACCTAACATGGCTACAATTTGTATTAATTACAATTCGAAACTTACTTCTAGCTATAATTGCATTCCCATCTCTCTCTCCCTCTCTCAAGAATCTCGCTCACAACTCTTTTTTTTTTGAGTCATATATCCTTGCAAGTCTCTCTCGGTTCTCTTCTATCAGTGTCTCTTTTACTTTATACAAGCAAAAATTATACAAATATATAATTTTTGTTCGTGTTTGTATTAAGTGAGAGAGAGACCGGATATGCAAATACAAAATATATCTCTTTGCCCTATACACTTGTATTTTTTATACAAATACAATTCTCTCCCTGCCTAGTTCTCTCTCTCTCTCTCTCTTTTTCTTTCTCTCTCGCTTTATACAAACACAAATTACATCATTGATACATATACATAGTAGTATACAAATACAATTTATCTCACTCCACTTCCGCCCACTCTAGCTCATCTCTCTCCTGCCTTTCTCAATCTCGCACGCCACTCTCCTTTCTCTAACATGTAGCTACAAATAGTAATTAGCATATTATAGTTATGAAGCATAATTAAATTGTTTTTGAGTAGCTATATGTGAAAATTCTTAATTTTTGAGTGGCTAGCTATAAATCTTTTCTAATTTTTTGTTCAAATATTCGATCAAAGTTGATGATAATTTGAATATTAGCAAATTTAAGAAAATATCAATATATTTTGCCTAAAGTTTATTGCCATACAAATATAATCACATAACAAAGAATTAATACATAATTAACTTATTGTGAAATGAGGTCTTGGGCCTAACTCACATCCTAAAAGCTAGCTCAAATTAGTATAAAATTTTTGTTATTCTTTAACTACGTCACCTTGCACCCGTTGCCTAACATCTAGTGCATAGACAATTTAATTTTGGGGCCCGAACATTGAGTGAGATTGACCGACTTTGATATCATGTGAAATTAGATTTTGAGCTCAGCTTACACCTCAAAAATTAGCTTAAAGGGAGGAAGATTGTCCAAATCTTATAAGGACTTCACCATCTCAATAACCACTAGTGTGGATTTTTGTCATTTTTTAACAATTCTTATCAACATATCCGAAATAAGCAATATTGCAATGCAATATAGCTATGGGGCGTAATTATTGAAACTATAACTATAAAGCCTTATTATGTTTAGTATATTTGTTGTTTCTCAATATACACCGAGTATACATGAAAAATATTTCGACTATTTAATTTTGATCAACTTAGAAGAACCTTTTAAACAATTCCAAAATTTTAATATGAAAATTCTCTTAGATATTTCGAGTGCTCGAAAAAATTGGAAGAAGAAACTGACACGACAATGATATCTCTTGCTAGCTTAACAATAATATAAAAAGTGTTTGTTAATATTTGTAGTTGAATTAGTTATATTAGAATAGATTTATCTGAATTAGATTCTTTTTGAAGTATAAATCTAACCAAGAAGGCAAATGAAATAATTGGACAAACTCACCTTATGATACATTTTATAGAGTATTTAACGAAAGTGAAAAGACTAATCAGAATAAATATCATTAAGAAGATTAAACTATGTACAACTAATAATAACAAAGAAATTTTATATTCTAAAATATGAGTGAAGAATGTAAAAAGAAGATACAATTACACACAAGAATTATAGGAATAGTAAATAAAAAATTTTCTTGGCAAAGTTAAATTTATAGAATAAAATTACAGAAATATGAAAAGACACGTGAAAAATTGAAAGGTCAAATATTATTAAAATAAATATAAAAAAGATAGAGATGAAATTTAACTTTAAAAGATACATGAATCTACTTTAATTTCTTGTCTTTAAAGAATAATTACTTATTTGTATTTTTTAAAATTTGTGTGAGAAATTTGAAAGGTTCAAGATTTTGAAATGAGAATAAGAAGATTATATGAAAATTATAAAAGTTTTAATTTAGTAGAGGGGCAAAATAGTAATTCAATTTTTTACTTTGCAGCTTTCCATTTATAATATGATACTAGTATTATTATAAGTGGGAAGAACTCAAGTCAAAAGTTGAATTACGATTTTACCCTCCCTATAAATTAAAATGTTATAATTAGTTTAATTAAATAATAATAACTTTTGAATTTTGTTAGATTAATTCCTATTATTATTATTGTTGTTGTTGTTGTTGTTGTTGTTATTATTATTATTAAAAGTGAAAAAAGCTTTTAGCTTCAAAATTGATTACCATTTTACCCCTACTGTAAGTAAAAATGTTATAAAATATTTAATTAGTCAAATATTAGAATTCTCAATAAGTTTTTTCTAATATATATTTGTATTTCAAATTTTTATGCAACCTATAATTACAATATTTAATATGTATTAACCTCTCACAATTGAATTATTATTATTATTATTATTAATTATGATAAAAAATCTTATTCTGCATACCTTAACTATAAGTTAAATAAAATTCATTTAATTAATTTTTCAGTTACATAAATTGAACGGGATTTGAAAGTGGAAAAGTGATTGTTTAATGTCCAGAGTCATACATGATTAATTGCTTTAAATTAACACATCATGTATTACTTTACCAAACTCTTTCAATTCCTATAATTTGTCTTCTGATTTTCTTAATTTGTCTCATCAAATTCTAACACTTTTAATTTAGTAACCAATCTTTATTAATAAACATCAGTAGAACTTGAATAGTTCATTAAGTATTTAAGTGTAAGTTAATTAGTATTATGTCAAAAGAAATTTGAAAGAACATAAAAAAACACTATATAAAGGAAACAAATGATTTTCATTTCCTTCAAGTTTTATTTCTTTAGTTAAACATCTAACACCCCTTCTAAATTTCTTTCTTTTCCCTTAAATTTTTTCGTTTGCATGAACTAAAGAAAATGGGAATGAAGAAACATGTAGAGTTGATAAATGTTGGAATTAAATGATTGTCATATCAATTTACATGCAACACTCAACATTCATTGAATGATATATGAAGATTACTTAGTCCTTAAGGAGTGCTAGCAGAAATTCATGAGCTATGAAAAGGAGGAAATTGATTTCTTTGGAATACTGATTTTAAAATTTTCATTAATTGATTTTATTCTTATAATGTACTGTAATTATAATTGCTTGAGACTATAGATAAAATGCTATGTTATTTGTGTATTTGGAAGGAGTTATAAAAATGATATCTTGTAGTATGCCTTCATGGCATCATGTGATTGGTATTGAAAAATTATATTGTAACTTTTTTTGTATTTTGTAATGTTTCTTTATATGTATCTTCATATTGGAACTTACTAATTTATTTTACAAAAGAATTAGGAGCATATGCATCATAAATAAATATAGTATCAAACTTTTTAAAGGAAAATTTTCTTTCATTTTGATAAAAACTATTTTAGCTACTACAAGATATAGGGATCTTCAGTTAAATAGTCGGATATATTTACTATTACTTTTTTTAGCCTATATATATATACTAGTTTTCGAGCACGCGCTTTGCGTGTGTAACCCATGAGTGTATTATTTCTTAAAAGATAATATTACTAAATAATAAAATGTCTAATTGAGATTTTTTACTTTGTTTTACTACTAATTGTGACACTCCAATTTTCTGACCTCCAAGTGAATGCATCAAGATAATAATACGAGAAATTAATAAAATAAACTTTGTTTGTAATTAAAAAAATAAGTTTGCAAAGCTAAAAGGAAAAATAACAACTATCTAAATTAAATTTCTTGATAGTTCTTTTTTATTGGTAGAATAATGCTAGATAGTGTAAGATTAACTTTGAGTGAATTAAAAACAAAACCTTTCATCTTTATTAATTGAATGTGTTTTATGTATTGTATTAAATTTTTTATCCACAAACACTTTTAAACTAATTTTTTAACTATAAATATTTAAAATTATTATGTAAAAAGTTTTATCATTTTATATTTATAATATTCTTGAATTTTATGATTAACTACTATTTTTATTTATATTTTATTTCTGTCATACATAACTTAATCCATCATTAATCTATAATTATATGTTTTTGCCCTTTTTTTTTCTTTAAATGACTTGTTTTTAAGTAACATTCTTAATTTTATTTCTTTTTTTTCTTAAGATATAATTTTTTGTTTTTTATTTTTTATTATTTTCCCTTATTTTATAAATCTAATTTTTATTAATTTATCTATATATTTTTTGTTTTTTTTTTTGTTTTTCTTTCTTATTTCACCTTGACCTTTTTTTACTTTTCAAAATTTTTTATATTGACCTTTCAATCATTTTTGTTTTTTTATATTAATATCCTCACCTTTAAGAATAAATCATTACTATATTTTCCATTTATAATTTCTTTTTACAAATTTTTTATTTCATTATTTATATTATTTTGTTTCCTAATTTCCTCTTTTTAAATTGGACTATTTACTTACATCTTCTCCTTCCTTGTTATTCATCTGATATTCATTTTAATCTTCCTCTAACTTTAATTTGTACTTATTTTCTTTCATTCTCGTTTTGAATTCTATCGTACTCTCTATGTTTTTTTTTATCTAGCTACATCTGTTCCATCAATTCTTCTTTTTTTTCATTTCTCTTTATTTCTCCATCTTTATTAATTCTCCTTTCCATATATTTTTCTTGTTCTCAACATTATCTCATTTATCATCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCGGGCCGGGGGCAAGTTATTTTTCGTTTTATATTTTGTATAGGACCAAAATAAAAGTGAGAAAATTTTTTTTTTTTTCGAGGTTTTGGGGGTTCCTCCATTTTTTTTTATGACGTTAAAAGTTTTAAACATAAGGTATATTTCCTTTCCTTAAGGATTTAAAAAAGGATTTTGGTAATTAACTAAATAAATTAAAGTTTTTAAAAATCCCAATTATTATGAATTTAAACCAGCAAAAAAACAACAGGAGGTAAATATTTTTTGCTTTGCTTGCAAAAGGTAATTTTTATTTACTAAGGTTAAAATAAAATAAAGGGAAAAAATGTTGGATATACCTTTCAACTTTGTCATTGGGAGCTGATATACCTCTTGTATAAAAAGTGGTTCATATATGCCCTTACCGTTATATAAACGGCTCACATATACCCCTGCCGTTACAAAATGACTCACAATATATCCTCCATTTAACGGAAGTTAAAAAATTAGTTTTAAATTTATATTTATTACTTCTAATTTTTTTTTTTAAAAATGACTTAGGGGTATATATGATTCTTCTATCAAAGTTCAAGGTATATTTTAATTTTTTTTCATACATAAATTATTTTTTGACTTCTTTTATTATAATTTTTGAATTTGTTATTCTTATTTTGTTTTTTTCTTTCATTCCTTAGTTTAAAGAATAAAAAATTAAACTATTTTTTTTTTGTGTATTGTAATTTAATTTCGTATTCAAAGAAAAAATTTGATCATCTACAATAAATTTTATAAGAATATTAGTGAAACATAAATAAATTTGATTATCAAAATAATTATTATAAATTAGTCATTGAAACAAAAAAAGGTAAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAGTAATAAAAATTTAGATTAAAATTATTTTTTTTATTTCCGTTAGAGGAAAAGGGTATATGTGAGCCATTTGTTTAAAGGTATATATGAGTCACTTTCATAACAAGGGGTATATCAGCTCTAAATGACAAAATTGAAGGGTATATCAGACCCTTTTCCCTAAAATAAAAAACATCATAATGTATTGGTCCCCGTTGGGTTTGTTAAGGTAGTTATACAATTAGTTAATTAATTTAATTTCTGAATTATAAACTGCCTTTAGGTGAAATAGCTTTTTCACTTTTATAAATTATTATATGATAAATTAATCAAAATAATAACTACTACACTCACTTGTTGCGTTCTTGTTTGATGAGATATTGATTGATCAATTTTTTAAAGTTGGTGTTAGCTAAAATTAAAAGCAAAAAAATGGAATAAGAGATAAATTAAACAACGTATGAACCAAATATGGATATTATTATTTTTTTAATTTTTTTTAATGGTTGGTGAAGAATATAACAATATCTATATTAATGAGGTTTGCATATTGAATATTGATAAATCACCTTTCTATGCATAATTTAGGCGGAGCTAGAATTAAGCCAATACGAGTTCAATTAAATTTAATAAATTCAATTCAAATTTATTGTCTCTTTGTGCGTAATTATGGCGAAGCTAAAATTAAGATCAAATACGAGTTTGATATATATAATTTAATAGTTTTGATCCAAATTCATTACTTTCGATGTGTAATTGCTAAAAGGTCAGACATGAATTTGATCATATTCAATAACTTTTAATATTTATATTAATAAATTCACATAAATATATATAAAAATTAAACAGAAGACTATGAGTCATGACATAGATGACTTTTTAAATGTCTTATTTTAGTTTGGTTTTGAGATAAAGATGCGACAACCATAGAGTATCTTTCTCATTTTAACTAACAACTTCTAATAATAATAATAATAATAATAAATAAAAGATAATTACACGAAATTAATACATATACATCATATATTTAAATTTATAGTTCATTTTACTTTACTAAATCATAATAAATGAATATTACATTGACTTGATATAAAATCTAATGCGAAATAAAAGCTTATAATATACAAGCATATTTTTCATTTATAAAAATAAAATAAAATTGAGCCACCCCATCAAGCCATATTTTGAAGCTTTATAAGTTTACCTTAACATAGATTAATCTTTAATTTTACTTACAAAATGCATTGATTTTACTAATATTTACCATTTAATAACTAAACTTTTAATTGTGAGGATATATACCATCTAATCGTGATATTTTTCATAGCAATCTTTATTTATATGTATAAAAATAATTTTCATAACTTATGATTAGGGGATAGTGAAAGTAACATATATTATTTGAAAATTATGTTATGAATATTATAAATCACAGCTTATAAAATTTAAAAACATATCAAAAATTTATGAGACTTTCGAAATTTTACAAATATCACATGTAAATTGGAATAGGAAATAACAAAAAA</genome_strand>
        <mrna_strand>TATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATACAAATCTATTGTGTTACCTTTTGGCTGTTTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="84985" stop="86038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85285" g_stop="85708" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85285" e_stop="85708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGATCAAATTTTTTCTTTGAATACGAAATTAAATTACAATACACAAAAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAACAAATTCAAA-AATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAGTCATTTTTAAAAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGGAGGATATATTGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTATATAACGGTAAGGGCATATATGAACCACTTTTTATACAAGAGGTATATCAGCTCCCAATGACAAAGTTGAAAG</genome_strand>
        <mrna_strand>TTATTGTAGATGA-CCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTT-TTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG--AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATA-TGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249157" ref_strand="-" ref_description="SGN-E249157 [cLEF-50-E5]">
      <seq>catggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaaaaaaaaaaaaataaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91784" stop="34122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91484" g_stop="90893" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90892" i_stop="89064" i_length="1829">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89063" g_stop="89020" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="636" r_length="44" r_score="0.659"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E249157" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249157" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91484" e_stop="90893"/>
          <exon e_start="89063" e_stop="89020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGTGTTACCTTTTGGCTGTTTCATATTTATTCTTTTTTTTTTTTGATCTATTTTGATTTCATAGTTGGAAAATTACGTGATTAATCATACTTATAGTAGTTAATTACCTAACATGGCTACAATTTGTATTAATTACAATTCGAAACTTACTTCTAGCTATAATTGCATTCCCATCTCTCTCTCCCTCTCTCAAGAATCTCGCTCACAACTCTTTTTTTTTTGAGTCATATATCCTTGCAAGTCTCTCTCGGTTCTCTTCTATCAGTGTCTCTTTTACTTTATACAAGCAAAAATTATACAAATATATAATTTTTGTTCGTGTTTGTATTAAGTGAGAGAGAGACCGGATATGCAAATACAAAATATATCTCTTTGCCCTATACACTTGTATTTTTTATACAAATACAATTCTCTCCCTGCCTAGTTCTCTCTCTCTCTCTCTCTTTTTCTTTCTCTCTCGCTTTATACAAACACAAATTACATCATTGATACATATACATAGTAGTATACAAATACAATTTATCTCACTCCACTTCCGCCCACTCTAGCTCATCTCTCTCCTGCCTTTCTCAATCTCGCACGCCACTCTCCTTTCTCTAACATGTAGCTACAAATAGTAATTAGCATATTATAGTTATGAAGCATAATTAAATTGTTTTTGAGTAGCTATATGTGAAAATTCTTAATTTTTGAGTGGCTAGCTATAAATCTTTTCTAATTTTTTGTTCAAATATTCGATCAAAGTTGATGATAATTTGAATATTAGCAAATTTAAGAAAATATCAATATATTTTGCCTAAAGTTTATTGCCATACAAATATAATCACATAACAAAGAATTAATACATAATTAACTTATTGTGAAATGAGGTCTTGGGCCTAACTCACATCCTAAAAGCTAGCTCAAATTAGTATAAAATTTTTGTTATTCTTTAACTACGTCACCTTGCACCCGTTGCCTAACATCTAGTGCATAGACAATTTAATTTTGGGGCCCGAACATTGAGTGAGATTGACCGACTTTGATATCATGTGAAATTAGATTTTGAGCTCAGCTTACACCTCAAAAATTAGCTTAAAGGGAGGAAGATTGTCCAAATCTTATAAGGACTTCACCATCTCAATAACCACTAGTGTGGATTTTTGTCATTTTTTAACAATTCTTATCAACATATCCGAAATAAGCAATATTGCAATGCAATATAGCTATGGGGCGTAATTATTGAAACTATAACTATAAAGCCTTATTATGTTTAGTATATTTGTTGTTTCTCAATATACACCGAGTATACATGAAAAATATTTCGACTATTTAATTTTGATCAACTTAGAAGAACCTTTTAAACAATTCCAAAATTTTAATATGAAAATTCTCTTAGATATTTCGAGTGCTCGAAAAAATTGGAAGAAGAAACTGACACGACAATGATATCTCTTGCTAGCTTAACAATAATATAAAAAGTGTTTGTTAATATTTGTAGTTGAATTAGTTATATTAGAATAGATTTATCTGAATTAGATTCTTTTTGAAGTATAAATCTAACCAAGAAGGCAAATGAAATAATTGGACAAACTCACCTTATGATACATTTTATAGAGTATTTAACGAAAGTGAAAAGACTAATCAGAATAAATATCATTAAGAAGATTAAACTATGTACAACTAATAATAACAAAGAAATTTTATATTCTAAAATATGAGTGAAGAATGTAAAAAGAAGATACAATTACACACAAGAATTATAGGAATAGTAAATAAAAAATTTTCTTGGCAAAGTTAAATTTATAGAATAAAATTACAGAAATATGAAAAGACACGTGAAAAATTGAAAGGTCAAATATTATTAAAATAAATATAAAAAAGATAGAGATGAAAT</genome_strand>
        <mrna_strand>CATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744837" ref_strand="+" ref_description="SGN-E744837 [GI|398715]">
      <seq>ttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93436" stop="90590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93136" g_stop="92179" g_length="958"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="958" r_length="958" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="959" r_stop="1150" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="90890" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1961" r_length="811" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E744837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1961</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93136" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="90890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGTGTT</genome_strand>
        <mrna_strand>TTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744554" ref_strand="+" ref_description="SGN-E744554 [GI|1256266]">
      <seq>actgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttgatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaactggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtgagtagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggacggacggacccaaatcaggccacggggacatcaattcagttctgtgatataatagcaagttcggacctagaaccactcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatcccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaataatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93073" stop="90590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92773" g_stop="92179" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="787" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="90890" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="1601" r_length="814" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E744554" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1598</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92773" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="90890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAG---TAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGTGTT</genome_strand>
        <mrna_strand>ACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTGATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACTGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGACGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTGATATAATAGCAAGTTCGGACCTAGAACCACTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATCCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746275" ref_strand="+" ref_description="SGN-E746275 [GI|47104779]">
      <seq>aacacacatagtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93448" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93148" g_stop="92179" g_length="970"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="970" r_length="970" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="971" r_stop="1162" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="90893" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1163" r_stop="1970" r_length="808" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1974" polyA_stop="1992"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E746275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1970</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93148" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>AACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712561" ref_strand="+" ref_description="SGN-E712561 [FB05AG08]">
      <seq>atttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91984" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91684" g_stop="90893" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="792" r_length="792" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="796" polyA_stop="807"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E712561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91684" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>ATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714103" ref_strand="+" ref_description="SGN-E714103 [FB10CB05]">
      <seq>gtatctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgtcctcgtgccgaattcggcacgaggatttttttcaagtccactttcaaattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91944" stop="90591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91644" g_stop="90893" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E714103" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91644" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>GTATCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712712" ref_strand="+" ref_description="SGN-E712712 [FB05CD12]">
      <seq>gtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaannnnnnannnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91818" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91518" g_stop="90893" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="657"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E712712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91518" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>GTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711323" ref_strand="+" ref_description="SGN-E711323 [FB01CG07]">
      <seq>gatagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91813" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91513" g_stop="90893" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="625" polyA_stop="639"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E711323" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91513" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>GATAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250162" ref_strand="-" ref_description="SGN-E250162 [cLEG-11-K23]">
      <seq>attcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaaaaaaaaaaaaaaaaaaatcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91772" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91472" g_stop="90893" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="604"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E250162" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250162" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91472" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>ATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259722" ref_strand="-" ref_description="SGN-E259722 [cLEG-42-L7]">
      <seq>tagtgatggaatcatacttaggtggtctcattaatccagcaggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtgtatatacgtatataaacttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91760" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91460" g_stop="90893" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="591"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E259722" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259722" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91460" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>TAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCAGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTGTATATACGTATATAAACTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248737" ref_strand="-" ref_description="SGN-E248737 [cLEG-5-G17]">
      <seq>ttttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcntggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttacgcttaaattggcaaggggtattgaataaaaatctattgtgtataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91696" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91396" g_stop="90893" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="527"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E248737" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248737" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91396" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>TTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCNTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTACGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254190" ref_strand="-" ref_description="SGN-E254190 [cLEG-34-D17]">
      <seq>tttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtgtatatacgtatataaacttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtcctgaataaaaatctattgtgttaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91695" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91395" g_stop="90893" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="526"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254190" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254190" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91395" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>TTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTGTATATACGTATATAAACTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTCCTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257067" ref_strand="-" ref_description="SGN-E257067 [cLEG-44-F21]">
      <seq>tgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcttggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaagcatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataacactctattgtgttaaaaaaaaaaaaagaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91693" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91393" g_stop="90893" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="523"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E257067" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257067" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91393" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>TGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCTTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGCATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAACACTCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251882" ref_strand="-" ref_description="SGN-E251882 [cLEG-14-N12]">
      <seq>gcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91692" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91392" g_stop="90893" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="523"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E251882" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251882" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91392" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>GCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259675" ref_strand="-" ref_description="SGN-E259675 [cLEG-42-K22]">
      <seq>gacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91684" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91384" g_stop="90893" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="514"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E259675" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259675" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91384" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>GACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245033" ref_strand="-" ref_description="SGN-E245033 [cLEF-13-C8]">
      <seq>agtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggttaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91635" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91335" g_stop="90893" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="474"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E245033" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245033" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91335" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>AGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGTTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398141" ref_strand="+" ref_description="SGN-E398141 [TUS-41-I2](-)">
      <seq>tggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccagatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91568" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91268" g_stop="90893" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="389"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E398141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91268" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>TGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249599" ref_strand="-" ref_description="SGN-E249599 [cLEF-56-E2]">
      <seq>ttcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacccaactttagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgagtaatattagtttttcccaaatgtgtatggttgtggaactgtttatgcttaaattggcaaggggtattgaataaaaatctattgtgttaaaaccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91556" stop="90589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91256" g_stop="90893" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="396"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E249599" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249599" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91256" e_stop="90893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</genome_strand>
        <mrna_strand>TTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACCCAACTTTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAAATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254900" ref_strand="+" ref_description="SGN-E254900 [cLEG-33-E11]">
      <seq>tcaataccccttgccaatttaagcataaacagttccacaaccatacacatctgggaaaaactaatattactcatatcctttttcagaaaactataattacattaaagcatcatcagtttcagcttcatcaccaatgtaaatgtatatacgtatataaacttatgaacccctaaacagaacttattgacaacttagtagtaacgaatgagccatgtaaatgcttgtcacactagagttgtgtgttatgcttgctctgccctgctcatgtggcacatcatatatatactctaatcatataatccatccacatacgccacgccagtagacctcaaccatgatccgccctgaatcagcttagccacagtgaacggcgtagctttagcgggatcagtaatgacatgataaccaggccacttgacacgcttactagtaccagcaccaggtccattgttcataaattcaccataatacaatgtgttcaacgcaaaatctccgtcccactcagcccaacccgctggattaatgagaccacctaagtatgattccatcactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="90608" stop="91762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90908" g_stop="91462" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E254900" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90908" e_stop="91462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATACCCCTTGCCAATTTAAGCATAAACAGTTCCACAACCATACACATCTGGGAAAAACTAATATTACTCATATCCTTTTTCAGAAAACTATAATTACATTAAAGCATCATCAGTTTCAGCTTCATCACCAATGTAAATGTATATACGTATATAAACTTATGAACCCCTAAACAGAACTTATTGACAACTTAGTAGTAACGAATGAGCCATGTAAATGCTTGTCACACTAGAGTTGTGTGTTATGCTTGCTCTGCCCTGCTCATGTGGCACATCATATATATACTCTAATCATATAATCCATCCACATACGCCACGCCAGTAGACCTCAACCATGATCCGCCCTGAATCAGCTTAGCCACAGTGAACGGCATAGCTTTAGCGGGATCAGTAATGACATGATAACCAGGCCACTTGACACGCTTACTAGTACCAGCACCAGGTCCATTGTTCATAAATTCACCATAATACAATGTCTTCAACGCAAAATCTCCGTCCCACTCAGCCCAACCCGCTGGATTAATGAGACCACCTAAGTATGATTCCATCACTACA</genome_strand>
        <mrna_strand>TCAATACCCCTTGCCAATTTAAGCATAAACAGTTCCACAACCATACACATCTGGGAAAAACTAATATTACTCATATCCTTTTTCAGAAAACTATAATTACATTAAAGCATCATCAGTTTCAGCTTCATCACCAATGTAAATGTATATACGTATATAAACTTATGAACCCCTAAACAGAACTTATTGACAACTTAGTAGTAACGAATGAGCCATGTAAATGCTTGTCACACTAGAGTTGTGTGTTATGCTTGCTCTGCCCTGCTCATGTGGCACATCATATATATACTCTAATCATATAATCCATCCACATACGCCACGCCAGTAGACCTCAACCATGATCCGCCCTGAATCAGCTTAGCCACAGTGAACGGCGTAGCTTTAGCGGGATCAGTAATGACATGATAACCAGGCCACTTGACACGCTTACTAGTACCAGCACCAGGTCCATTGTTCATAAATTCACCATAATACAATGTGTTCAACGCAAAATCTCCGTCCCACTCAGCCCAACCCGCTGGATTAATGAGACCACCTAAGTATGATTCCATCACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250938" ref_strand="-" ref_description="SGN-E250938 [cLEG-13-O24]">
      <seq>atggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatcaagctgcaagtttttatgcctttatgtgatgattgtagtttcaataaataccagaggaacattagtttttcccagatgtgaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91783" stop="90651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91483" g_stop="90954" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="552"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E250938" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91483" e_stop="90954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGT</genome_strand>
        <mrna_strand>ATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATCAAGCTGCAAGTTTTTATGCCTTTATGTGATGATTGTAGTTTCAATAAATACCAGAGGAACATTAGTTTTTCCCAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251977" ref_strand="+" ref_description="SGN-E251977 [cLEG-14-N24]">
      <seq>gggaaaaactaatattactcatatcctttttcagaaaactatgattacattaaagcatcatcagtttcagcttcatcaccaatggaaatgtatatacgtctataaacttatgaacccctaaacagaacttattgacaacttagtagtaacgaatgagccatgtgaatgcttgtcacactagagttgtgtgttatgcttgctctgccctgctcatgtggcacatcatatatatactctaatcatataatccatccacatacgccacgccagtagacctcaaccatgatccgccctgaatcagcttagccacagggaacggcatagctttagcgggatcaggaatgacatgataaccaggccacttgacacgcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="90660" stop="91635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90960" g_stop="91335" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E251977" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90960" e_stop="91335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAACTAATATTACTCATATCCTTTTTCAGAAAACTATAATTACATTAAAGCATCATCAGTTTCAGCTTCATCACCAATGTAAATGTATATACGTATATAAACTTATGAACCCCTAAACAGAACTTATTGACAACTTAGTAGTAACGAATGAGCCATGTAAATGCTTGTCACACTAGAGTTGTGTGTTATGCTTGCTCTGCCCTGCTCATGTGGCACATCATATATATACTCTAATCATATAATCCATCCACATACGCCACGCCAGTAGACCTCAACCATGATCCGCCCTGAATCAGCTTAGCCACAGTGAACGGCATAGCTTTAGCGGGATCAGTAATGACATGATAACCAGGCCACTTGACACGCTTACT</genome_strand>
        <mrna_strand>GGGAAAAACTAATATTACTCATATCCTTTTTCAGAAAACTATGATTACATTAAAGCATCATCAGTTTCAGCTTCATCACCAATGGAAATGTATATACGTCTATAAACTTATGAACCCCTAAACAGAACTTATTGACAACTTAGTAGTAACGAATGAGCCATGTGAATGCTTGTCACACTAGAGTTGTGTGTTATGCTTGCTCTGCCCTGCTCATGTGGCACATCATATATATACTCTAATCATATAATCCATCCACATACGCCACGCCAGTAGACCTCAACCATGATCCGCCCTGAATCAGCTTAGCCACAGGGAACGGCATAGCTTTAGCGGGATCAGGAATGACATGATAACCAGGCCACTTGACACGCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708187" ref_strand="+" ref_description="SGN-E708187 [FA35AD01]">
      <seq>cccattcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatgatgccttaatgtaattatagttttctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92281" stop="90688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92188" g_stop="92179" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="202" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="90988" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="915" r_length="713" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E708187" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92188" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="90988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAA</genome_strand>
        <mrna_strand>CCCATTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCCTTAATGTAATTATAGTTTTCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251181" ref_strand="+" ref_description="SGN-E251181 [cLEG-10-N3]">
      <seq>cagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggggatgaaacttaaactgatgatgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91959" stop="90710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91659" g_stop="91010" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E251181" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91659" e_stop="91010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTA</genome_strand>
        <mrna_strand>CAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGGGATGAAACTTAAACTGATGATGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700893" ref_strand="+" ref_description="SGN-E700893 [FA14BH03]">
      <seq>tgccgttggatcacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggggttcataagtttatatacgtatatacatttacattggtgatgaagctgaaactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92516" stop="90718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92216" g_stop="92179" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="229" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91018" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="912" r_length="683" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E700893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92216" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATG</genome_strand>
        <mrna_strand>TGCCGTTGGATC-ACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702345" ref_strand="+" ref_description="SGN-E702345 [FA18BH04]">
      <seq>gatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtggtgacagcatttacatggctcattcgntactactaagttgtcaataagttctgtttaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92570" stop="90775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92270" g_stop="92179" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="284" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91075" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="910" r_length="626" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E702345" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92270" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGT-GTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGG</genome_strand>
        <mrna_strand>GATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGGTGAC-AGCATTTACATGGCTCATTCGNTACTACTAAGTTGTCAATAAGTTCTGTTTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704087" ref_strand="+" ref_description="SGN-E704087 [FA23BC09]">
      <seq>gatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaataagttctgtttaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92512" stop="90775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92212" g_stop="92179" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="226" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91075" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="852" r_length="626" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E704087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92212" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGG</genome_strand>
        <mrna_strand>GATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716583" ref_strand="+" ref_description="SGN-E716583 [FB17BH08]">
      <seq>gatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaagttgtcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92265" stop="90789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91965" g_stop="91789" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91089" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="789" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E716583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91965" e_stop="91789"/>
          <exon e_start="91700" e_stop="91089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATA</genome_strand>
        <mrna_strand>GATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707155" ref_strand="+" ref_description="SGN-E707155 [FA32AH03]">
      <seq>tttatgtaaagaggcgatcttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacagcacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagaagcagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactactaaattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92631" stop="90792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92331" g_stop="92179" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="345" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91092" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="954" r_length="609" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E707155" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>954</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92331" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCA</genome_strand>
        <mrna_strand>TTTATGTAAAGAGGCGATCTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGCACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAAGCAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAATTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702028" ref_strand="+" ref_description="SGN-E702028 [FA17CD10]">
      <seq>gttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92599" stop="90800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92299" g_stop="92179" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="313" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91100" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="913" r_length="600" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E702028" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92299" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTA</genome_strand>
        <mrna_strand>GTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGT-AATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704133" ref_strand="+" ref_description="SGN-E704133 [FA23BG07]">
      <seq>ggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140282" stop="90802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91926" g_stop="91789" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91102" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="737" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E704133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91926" e_stop="91789"/>
          <exon e_start="91700" e_stop="91102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTAC</genome_strand>
        <mrna_strand>GGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706143" ref_strand="+" ref_description="SGN-E706143 [FA29AE10]">
      <seq>ctggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacatggctcattcgttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92532" stop="90803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92232" g_stop="92179" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="246" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91103" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="844" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E706143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92232" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTA</genome_strand>
        <mrna_strand>CTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247969" ref_strand="+" ref_description="SGN-E247969 [cLEF-47-P22]">
      <seq>aataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgctcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgccacatgagcagggcagagcaagcataacacacaactctagtgtgacaagcatttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91925" stop="90819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91625" g_stop="91119" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E247969" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91625" e_stop="91119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACAT</genome_strand>
        <mrna_strand>AATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGCTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272112" ref_strand="+" ref_description="SGN-E272112 [cLEN-4-K17]">
      <seq>attctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92022" stop="90877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91814" g_stop="91789" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91177" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="550" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91814" e_stop="91789"/>
          <exon e_start="91700" e_stop="91177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGC</genome_strand>
        <mrna_strand>ATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252241" ref_strand="+" ref_description="SGN-E252241 [cLEG-12-A4]">
      <seq>gtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtggcgtatgtggatggattatatgattagagtatatatatgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140262" stop="90878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91906" g_stop="91789" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91178" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="641" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E252241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91906" e_stop="91789"/>
          <exon e_start="91700" e_stop="91178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTG</genome_strand>
        <mrna_strand>GTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698651" ref_strand="+" ref_description="SGN-E698651 [FA07AF10]">
      <seq>cccgctggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggcgtgccgtatgtggatggattatatgattaaagtatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92532" stop="90885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92236" g_stop="92179" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="250" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91185" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="766" r_length="516" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E698651" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92236" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATA</genome_strand>
        <mrna_strand>CCCGCTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGCCGTATGTGGATGGATTATATGATTAAAGTATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433135" ref_strand="+" ref_description="SGN-E433135 [STM-58-E13]">
      <seq>cgacgttgtcgtattgatgcttatcaagacaccctatatgcacattctcaaaggcaattctatcgagactcctacgtgtcaggtacagttcaactgaattcagtatttttaacataacaaattatgaaggttgaatcatctaagtttaaatcttgaatccgtctatgcagggactattgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgagtaaaaatcagaaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtgacataatagcaagtccggacctagaaccagtcgtgaaagaattcaaaacgtatcttggtaggccatggaaagaatattcaagaactgtagtgatgcaatcatacttaggtggtctcattgatccagcgggttgggctgagtggagtggagaatttgcgttgaagacattgtattatggtgagtatatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgaccccgctgaagctatgccgttcactgtggctgagctgattcagggtggatcatggttgagttctactggcgttgcgtatgtggatggattaaatgattagagtattataaaattactcttttctttgtttatgtagcaagacatctctttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140223" stop="90877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91870" g_stop="91190" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E433135" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91870" e_stop="91190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTA-AAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTAT</genome_strand>
        <mrna_strand>CGACGTTGTCGTATTGATGCTTATCAAGACACCCTATATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGTCAGGTACAGTTCAACTGAATTCAGT-ATTTTTAACATAACAAATTATGAAGGTTGAATCATCTAAGTTTAAATCTTGAATCCGTCTATGCAGGGACTATTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGAGTAAAAATCAGAAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTGACATAATAGCAAGTCCGGACCTAGAACCAGTCGTGAAAGAATTCAAAACGTATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGCAATCATACTTAGGTGGTCTCATTGATCCAGCGGGTTGGGCTGAGTGGAGTGGAGAATTTGCGTTGAAGACATTGTATTATGGTGAGTATATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGACCCCGCTGAAGCTATGCCGTTCACTGTGGCTGAGCTGATTCAGGGTGGATCATGGTTGAGTTCTACTGGCGTTGCGTATGTGGATGGATTAAATGATTAGAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262460" ref_strand="+" ref_description="SGN-E262460 [cLEG-56-N15]">
      <seq>taatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcatggttgaggtctactggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92634" stop="90925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92334" g_stop="92179" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="348" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91225" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="824" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E262460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92334" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGC</genome_strand>
        <mrna_strand>TAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252242" ref_strand="+" ref_description="SGN-E252242 [cLEG-12-A6]">
      <seq>gtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtattgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgttcactgtggctaagctgattcagggcggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140262" stop="90942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91906" g_stop="91789" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91242" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="577" r_length="459" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E252242" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91906" e_stop="91789"/>
          <exon e_start="91700" e_stop="91242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCAT</genome_strand>
        <mrna_strand>GTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTATTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709486" ref_strand="+" ref_description="SGN-E709486 [FA52AG07]">
      <seq>cgcttgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatccccctaaagctatgccgttcactgtggctaaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92640" stop="90957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92345" g_stop="92179" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="359" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91257" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="801" r_length="442" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E709486" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92345" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGA</genome_strand>
        <mrna_strand>CGCTTGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTC--ATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCCCTAAAGCTATGCCGTTCACTGTGGCTAAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699304" ref_strand="+" ref_description="SGN-E699304 [FA09CB06]">
      <seq>atactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggcgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92260" stop="90972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91960" g_stop="91789" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91272" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="601" r_length="429" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E699304" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91960" e_stop="91789"/>
          <exon e_start="91700" e_stop="91272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCA</genome_strand>
        <mrna_strand>ATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGCGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263822" ref_strand="+" ref_description="SGN-E263822 [cLEG-74-G12]">
      <seq>caaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtggtggtactantaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91883" stop="90975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91583" g_stop="91275" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E263822" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91583" e_stop="91275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGT</genome_strand>
        <mrna_strand>CAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGGTGGTACTANTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257323" ref_strand="+" ref_description="SGN-E257323 [cLEG-46-J14]">
      <seq>acggctacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92257" stop="90977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91961" g_stop="91789" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91277" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="597" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E257323" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91961" e_stop="91789"/>
          <exon e_start="91700" e_stop="91277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCC</genome_strand>
        <mrna_strand>ACGGCTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256394" ref_strand="+" ref_description="SGN-E256394 [cLEG-38-K11]">
      <seq>aacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140292" stop="90979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91936" g_stop="91789" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91279" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="570" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E256394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91936" e_stop="91789"/>
          <exon e_start="91700" e_stop="91279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATG</genome_strand>
        <mrna_strand>AACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259926" ref_strand="+" ref_description="SGN-E259926 [cLEG-51-E6]">
      <seq>agaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcccgctaaagctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140272" stop="90979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91916" g_stop="91789" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91279" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="550" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E259926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91916" e_stop="91789"/>
          <exon e_start="91700" e_stop="91279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATG</genome_strand>
        <mrna_strand>AGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709303" ref_strand="+" ref_description="SGN-E709303 [FA51BC12]">
      <seq>cgctcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggaccctggtgctggtactagtaagcgtgtcaagtggcctgggtatcatgtcatttctgatcccgctaaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92643" stop="90981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92345" g_stop="92179" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="359" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91281" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="778" r_length="419" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E709303" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92345" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGA-CCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTA</genome_strand>
        <mrna_strand>CGCTCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTC--ATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGGTATCATGTCATTTCTGATCCCGCTAAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247934" ref_strand="+" ref_description="SGN-E247934 [cLEF-47-D20]">
      <seq>gaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaatttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagttagcgtgtcaagtggcctggttatcatgtcattactgatcccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140275" stop="90988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91919" g_stop="91789" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91288" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="544" r_length="413" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E247934" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91919" e_stop="91789"/>
          <exon e_start="91700" e_stop="91288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCT</genome_strand>
        <mrna_strand>GAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAATTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTTAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264662" ref_strand="+" ref_description="SGN-E264662 [cLEG-72-F14]">
      <seq>ccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcaggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggttatcatgtcattactgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92281" stop="90992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92187" g_stop="92179" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="201" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91292" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="610" r_length="409" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E264662" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92187" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCC</genome_strand>
        <mrna_strand>CCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCAGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260959" ref_strand="+" ref_description="SGN-E260959 [cLEG-55-B16]">
      <seq>gttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaaacattgtattatggtgaatttatgacaatggacctggtgctggtactagtaagcgtgtcaagtggcctggntatcatgtcattactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92671" stop="90994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92371" g_stop="92179" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="385" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91294" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="790" r_length="405" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E260959" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92371" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGAT</genome_strand>
        <mrna_strand>GTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAA-ACATTGTATTATGGTGAATTTATG-ACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGNTATCATGTCATTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246293" ref_strand="+" ref_description="SGN-E246293 [cLEF-40-D19]">
      <seq>acatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatgaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92250" stop="91054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91950" g_stop="91789" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91354" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="509" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E246293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91950" e_stop="91789"/>
          <exon e_start="91700" e_stop="91354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAAT</genome_strand>
        <mrna_strand>ACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258892" ref_strand="+" ref_description="SGN-E258892 [cLEG-41-I2]">
      <seq>aacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccaacgggttgggctgagtgggacggagattttgcgttgaagacattgtattatggtgaatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140292" stop="91060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91936" g_stop="91789" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91360" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="489" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E258892" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91936" e_stop="91789"/>
          <exon e_start="91700" e_stop="91360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATG</genome_strand>
        <mrna_strand>AACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAACGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245487" ref_strand="-" ref_description="SGN-E245487 [cLEF-43-D17]">
      <seq>gcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgcgttgaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140277" stop="91082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91921" g_stop="91789" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91382" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="452" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E245487" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245487" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91921" e_stop="91789"/>
          <exon e_start="91700" e_stop="91382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGAC</genome_strand>
        <mrna_strand>GCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263812" ref_strand="+" ref_description="SGN-E263812 [cLEG-74-H12]">
      <seq>caaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccagcgggttgggctgagtgggacggagattttgngttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="91883" stop="91085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91583" g_stop="91385" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E263812" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91583" e_stop="91385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAA</genome_strand>
        <mrna_strand>CAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGNGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253998" ref_strand="+" ref_description="SGN-E253998 [cLEG-34-G13]">
      <seq>tcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttaggtggtctcattaatccancgggttgggctgagtgggacggagattttgcgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92274" stop="91086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91974" g_stop="91789" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91700" g_stop="91386" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="501" r_length="315" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E253998" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91974" e_stop="91789"/>
          <exon e_start="91700" e_stop="91386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGA</genome_strand>
        <mrna_strand>TCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCANCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254804" ref_strand="+" ref_description="SGN-E254804 [cLEG-33-I2]">
      <seq>ctcttgctgcagtcggccaagggatttatacctacaggacatatgtatacagaacacagcagggccagcgaaagaacaagcagtggcaccttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagaaaccctttatgccacattctcaaaggccaattctatcgagactcctacctgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaatacccagcaaaaccatggtgacctgcaccaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaaccataatagcaagttcggacctagaacccgtcctgaaagaattccccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacctaggtggtctcattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92281" stop="91126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92184" g_stop="92179" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="203" r_length="197" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91426" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="484" r_length="281" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254804" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92184" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAA-GGATTTATA-CTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCA-CTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATG-CACATTCTCAAAGG-CAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATA-CCAGCAAAA-CATGGTGA-CTGCA-CAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAA-CATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATT-CCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAAT</genome_strand>
        <mrna_strand>CTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGGATTTATACCTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGAACAAGCAGTGGCACCTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGAAACCCTTTATGCCACATTCTCAAAGGCCAATTCTATCGAGACTCCTACCTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCCAGCAAAACCATGGTGACCTGCACCAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACCATAATAGCAAGTTCGGACCTAGAACCCGTCCTGAAAGAATTCCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACCTAGGTGGTCTCATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701820" ref_strand="+" ref_description="SGN-E701820 [FA17AB06]">
      <seq>cttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaaagaatattcaagaactgtagtgatggaatcatacttaggtggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92784" stop="91133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92484" g_stop="92179" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="498" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91433" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="767" r_length="269" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E701820" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92484" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGG-AAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCT</genome_strand>
        <mrna_strand>CTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699875" ref_strand="+" ref_description="SGN-E699875 [FA11BH01]">
      <seq>cgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatacttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92871" stop="91140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92571" g_stop="92179" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="585" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91440" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="846" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E699875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92571" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAG</genome_strand>
        <mrna_strand>CGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272545" ref_strand="+" ref_description="SGN-E272545 [cLEM-21-E22]">
      <seq>cgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92641" stop="91143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92341" g_stop="92179" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="355" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91443" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="613" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92341" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACT</genome_strand>
        <mrna_strand>CGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273520" ref_strand="+" ref_description="SGN-E273520 [cLEN-6-G11]">
      <seq>aaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92624" stop="91143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92324" g_stop="92179" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="338" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91443" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="596" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E273520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92324" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACT</genome_strand>
        <mrna_strand>AAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704364" ref_strand="+" ref_description="SGN-E704364 [FA24AD03]">
      <seq>gttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggaactagaaccagtcctgaaagaatcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92879" stop="91144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92579" g_stop="92179" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="593" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91444" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="849" r_length="256" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E704364" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92579" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATAC</genome_strand>
        <mrna_strand>GTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGAACTAGAACCAGTCCTGAAAGAA-TCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256687" ref_strand="+" ref_description="SGN-E256687 [cLEG-40-F11]">
      <seq>ttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92598" stop="91144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92298" g_stop="92179" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="312" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91444" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="569" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E256687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92298" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATAC</genome_strand>
        <mrna_strand>TTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254821" ref_strand="+" ref_description="SGN-E254821 [cLEG-33-M22]">
      <seq>aatgaacttgatgattgttggtgatggaaggtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaagccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92579" stop="91144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92279" g_stop="92179" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="293" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91444" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="550" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254821" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92279" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATAC</genome_strand>
        <mrna_strand>AATGAACTTGATGATTGTTGGTGATGGAAGGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAAGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705920" ref_strand="+" ref_description="SGN-E705920 [FA28CA10]">
      <seq>tgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92835" stop="91147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92535" g_stop="92179" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="549" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91447" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="803" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E705920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92535" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCA</genome_strand>
        <mrna_strand>TGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703828" ref_strand="+" ref_description="SGN-E703828 [FA22CC12]">
      <seq>cgctcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggtaggccatggaaagaatattcaagaactgtagtgatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92829" stop="91150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92531" g_stop="92179" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="545" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91450" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="796" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E703828" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92531" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAA</genome_strand>
        <mrna_strand>CGCTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710005" ref_strand="+" ref_description="SGN-E710005 [FA53DF12]">
      <seq>ccgttgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattccgttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttgggaggccatggaaagaatattcaagaactgtagtgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92780" stop="91151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92482" g_stop="92179" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="496" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91451" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="746" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E710005" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92482" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGA</genome_strand>
        <mrna_strand>CCGTTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCCGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGGAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254192" ref_strand="+" ref_description="SGN-E254192 [cLEG-34-F11]">
      <seq>gctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92668" stop="91188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92368" g_stop="92179" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="382" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91488" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="595" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254192" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92368" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTA</genome_strand>
        <mrna_strand>GCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253133" ref_strand="+" ref_description="SGN-E253133 [cLEG-25-P2]">
      <seq>caccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttcggacctagaaccagtcctgaaagaattcccaacatatcttggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92661" stop="91188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92361" g_stop="92179" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="375" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91488" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="588" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E253133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92361" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTA</genome_strand>
        <mrna_strand>CACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272150" ref_strand="+" ref_description="SGN-E272150 [cLEN-4-G1]">
      <seq>cttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccgaatcatgccacggggacatcaattcagttctgtaacataatagcaagttcggacctagagccagtcctgaaagaattcccaacatatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92613" stop="91192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92313" g_stop="92179" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="327" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91492" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="536" r_length="209" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272150" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92313" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTT</genome_strand>
        <mrna_strand>CTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCGAATCATGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAGCCAGTCCTGAAAGAATTCCCAACATATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248695" ref_strand="+" ref_description="SGN-E248695 [cLEF-58-E20]">
      <seq>acgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagccgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaagccacggggacatcaattcagttctgtaacataatagcaagttcggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92701" stop="91226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92401" g_stop="92179" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="415" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91526" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="590" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E248695" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92401" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCT</genome_strand>
        <mrna_strand>ACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGCCGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAAGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272604" ref_strand="+" ref_description="SGN-E272604 [cLEM-21-J7]">
      <seq>gagggccgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtataccagaacaccagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcaccattctcaaaggcaattctatcgagactcctaccgtgacaggtacctgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatagcaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92647" stop="91232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92347" g_stop="92179" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="365" r_length="196" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91532" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="535" r_length="170" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272604" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92347" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATA-CAGAACA-CAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCA-CATTCTCAAAGGCAATTCTATCGAGACTCCTA-CGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTA-CTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTC</genome_strand>
        <mrna_strand>GAGGGCCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACCAGAACACCAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACCATTCTCAAAGGCAATTCTATCGAGACTCCTACCGTGACAG........................................................................................GTACCTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703281" ref_strand="+" ref_description="SGN-E703281 [FA21AC10]">
      <seq>tcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcaccaggcaggacggacccaaatcaggccacggggacatcaattcanttctgtaacataatagcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92920" stop="91234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92620" g_stop="92179" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="634" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91534" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="801" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E703281" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92620" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGT</genome_strand>
        <mrna_strand>TCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACCAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCANTTCTGTAACATAATAGCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253497" ref_strand="+" ref_description="SGN-E253497 [cLEG-24-O13]">
      <seq>gggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttctgtaacataatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92699" stop="91239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92399" g_stop="92179" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="413" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91539" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="575" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E253497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92399" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAG</genome_strand>
        <mrna_strand>GGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245019" ref_strand="+" ref_description="SGN-E245019 [cLEF-2-L8]">
      <seq>gttgctgcaacaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaagacggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92671" stop="91284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92371" g_stop="92179" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="385" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91584" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="502" r_length="117" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E245019" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92371" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACC</genome_strand>
        <mrna_strand>GTTGCTGCAACACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAAGACGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697164" ref_strand="+" ref_description="SGN-E697164 [FA01AA11]">
      <seq>ggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcaaanttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaacccgggtaaataccagcaaacatggtgactgcacaaggcaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92738" stop="91289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92438" g_stop="92179" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="452" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91589" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="563" r_length="111" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E697164" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92438" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGAC</genome_strand>
        <mrna_strand>GGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCAAANTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAACCCGGGTAAATACCAGC-AAACATGGTGACTGCACAAGGCAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705471" ref_strand="+" ref_description="SGN-E705471 [FA27BA05]">
      <seq>cttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaccgggtaaataccagcaaaacatggtgactgcacaaggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93055" stop="91292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92755" g_stop="92179" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="769" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91592" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="877" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E705471" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92755" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAG</genome_strand>
        <mrna_strand>CTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAG-AAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276277" ref_strand="+" ref_description="SGN-E276277 [cLEN-21-G4]">
      <seq>tcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92828" stop="91296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92528" g_stop="92179" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="542" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91596" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="647" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E276277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92528" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAG</genome_strand>
        <mrna_strand>TCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250554" ref_strand="+" ref_description="SGN-E250554 [cLEG-21-K21]">
      <seq>tgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtggccttaatgttgtcgatggatcaacaaccttgcgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcaaggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccatcaaaacatggtgactgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92757" stop="91298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92457" g_stop="92179" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="471" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91598" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="574" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E250554" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92457" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACA</genome_strand>
        <mrna_strand>TGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTGGCCTTAATGTTGTCGATGGATCAACAACCTTGCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAAGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCATCAAAACATGGTGACTGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703311" ref_strand="+" ref_description="SGN-E703311 [FA21AF05]">
      <seq>tcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92920" stop="91302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92620" g_stop="92179" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="634" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91602" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="733" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E703311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92620" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTG</genome_strand>
        <mrna_strand>TCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256330" ref_strand="+" ref_description="SGN-E256330 [cLEG-37-I14]">
      <seq>gctgcagcaccttataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92668" stop="91302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92368" g_stop="92179" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="382" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91602" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="481" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E256330" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92368" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTG</genome_strand>
        <mrna_strand>GCTGCAGCACCTTATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704387" ref_strand="+" ref_description="SGN-E704387 [FA24AF03]">
      <seq>aaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93007" stop="91314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92707" g_stop="92179" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="721" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91614" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="808" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E704387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92707" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAA</genome_strand>
        <mrna_strand>AAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253727" ref_strand="+" ref_description="SGN-E253727 [cLEG-32-K23]">
      <seq>cttgctgaagcagttgctgcagcaccagataagagtaagaaccgttatgtaatttatgtaaagaggggaaccttataaagagaatgttgagggggctagccataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatacctaccaggacatatgtatacagaacacagcagggcccgcgaaagaacaagcagtggcaccttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgccttatcaagacacccctttatgccaccattctcaaaggccattctatcgagactcctacgtgacaggtacctgttgatttcatatttggtaatgcagcagttgtattccagaaatgcccagctcgtagctagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92683" stop="91333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92383" g_stop="92179" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="405" r_length="199" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91633" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="475" r_length="70" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E253727" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92383" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAA-CTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATA-CTA-CAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCA-CTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATG-CTTATCAAGACA-CCCTTTATG-CA-CATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTA-CTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATG-CCAGCTCGTAGCTAGAAAA</genome_strand>
        <mrna_strand>CTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGAACCGTTATGTAATTTATGTAAAGAGGGGAACCTTATAAAGAGAATGTTGAGGGGGCTAGCCATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACCTACCAGGACATATGTATACAGAACACAGCAGGGCCCGCGAAAGAACAAGCAGTGGCACCTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCCTTATCAAGACACCCCTTTATGCCACCATTCTCAAAGGCCATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACCTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCCAGCTCGTAGCTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703112" ref_strand="+" ref_description="SGN-E703112 [FA20CD04]">
      <seq>gtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93127" stop="91350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92827" g_stop="92179" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="841" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91650" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="892" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E703112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92827" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCC</genome_strand>
        <mrna_strand>GTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259673" ref_strand="+" ref_description="SGN-E259673 [cLEG-42-K8]">
      <seq>atgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagaggtcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92809" stop="91471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92509" g_stop="92179" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="523" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91668" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="556" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E259673" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92509" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAG</genome_strand>
        <mrna_strand>ATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGGTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251972" ref_strand="+" ref_description="SGN-E251972 [cLEG-14-L20]">
      <seq>gaacgaatcttgaagagttgatttcgagagctaaggtagcgggagcgatgctggcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcaaggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacatttctaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92895" stop="91471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92595" g_stop="92179" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="609" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91681" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="629" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E251972" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92595" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTT</genome_strand>
        <mrna_strand>GAACGAATCTTGAAGAGTTGATTTCGAGAGCTAAGGTAGCGGGAGCGATGCTGGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAAGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTTCTAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395181" ref_strand="+" ref_description="SGN-E395181 [TUS-41-I2]">
      <seq>ctcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggccattctatcgagactcctacgtgacaggtactgttgatttcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92829" stop="91471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92529" g_stop="92179" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="543" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91682" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="562" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E395181" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92529" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATT</genome_strand>
        <mrna_strand>CTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCCATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACTGTTGATTTCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251735" ref_strand="+" ref_description="SGN-E251735 [cLEG-15-O2]">
      <seq>gtaggaaaaatgccatcttgggtgatttcgattgataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92799" stop="91484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92500" g_stop="92179" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91789" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="514" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91700" g_stop="91696" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="519" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E251735" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92500" e_stop="92179"/>
          <exon e_start="91980" e_stop="91789"/>
          <exon e_start="91700" e_stop="91696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACT</genome_strand>
        <mrna_strand>GTAGGAAAAATGCCATCTTGGGTGATTTCGATTGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699989" ref_strand="+" ref_description="SGN-E699989 [FA11DB11]">
      <seq>atctgattcaattgcagcaattgataaaccacttcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93032" stop="91494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92732" g_stop="92179" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91794" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="741" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E699989" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92732" e_stop="92179"/>
          <exon e_start="91980" e_stop="91794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGT</genome_strand>
        <mrna_strand>ATCTGATTCAATTGCAGCAATTGATAAACCACTTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255188" ref_strand="+" ref_description="SGN-E255188 [cLEG-31-K2]">
      <seq>tcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92828" stop="91504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92528" g_stop="92179" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91804" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="527" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E255188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92528" e_stop="92179"/>
          <exon e_start="91980" e_stop="91804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAG</genome_strand>
        <mrna_strand>TCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254605" ref_strand="+" ref_description="SGN-E254605 [cLEG-29-A21]">
      <seq>gggctcaggatgaggatgttttcatgacggttttaggaaaaatgccatcgggggaaggttcgttggataggaagctgatggacagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92829" stop="91506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92532" g_stop="92179" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91806" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="529" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254605" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92532" e_stop="92179"/>
          <exon e_start="91980" e_stop="91806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCG</genome_strand>
        <mrna_strand>GGGCTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCGGGGGAAGGTTCGTTGGATAGGAAGCTGATGGACAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251400" ref_strand="+" ref_description="SGN-E251400 [cLEG-9-G13]">
      <seq>caataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92585" stop="91516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92285" g_stop="92179" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91816" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="272" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E251400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92285" e_stop="92179"/>
          <exon e_start="91980" e_stop="91816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGC</genome_strand>
        <mrna_strand>CAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248176" ref_strand="+" ref_description="SGN-E248176 [cLEF-55-E6]">
      <seq>ctgatggagagttcgggtaaagacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92758" stop="91525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92458" g_stop="92179" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91825" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="436" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E248176" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92458" e_stop="92179"/>
          <exon e_start="91980" e_stop="91825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATT</genome_strand>
        <mrna_strand>CTGATGGAGAGTTCGGGTAAAGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249986" ref_strand="+" ref_description="SGN-E249986 [cLEG-4-O16]">
      <seq>ccgggctgcaggtgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttgtcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacancanggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92885" stop="91526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92580" g_stop="92179" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="411" r_length="402" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91826" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="566" r_length="155" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E249986" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92580" e_stop="92179"/>
          <exon e_start="91980" e_stop="91826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACAT</genome_strand>
        <mrna_strand>AGGTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTGTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACANCANGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255909" ref_strand="+" ref_description="SGN-E255909 [cLEG-35-H22]">
      <seq>gttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggccaaggatttatactacaggacatatgtatacagaacacagcagggccagcgaaagaccaagcagtggcacttcgagttggagctgatatgtctgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92944" stop="91572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92644" g_stop="92179" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91872" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="575" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E255909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92644" e_stop="92179"/>
          <exon e_start="91980" e_stop="91872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCAT</genome_strand>
        <mrna_strand>GTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701095" ref_strand="+" ref_description="SGN-E701095 [FA15AA11]">
      <seq>ctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgctgcagtcggcccaggatttatactacaggacatatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93324" stop="91641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93024" g_stop="92179" g_length="846"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="846" r_length="846" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91980" g_stop="91941" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="886" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E701095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93024" e_stop="92179"/>
          <exon e_start="91980" e_stop="91941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTATGCTTTCAATAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCCTCTTCGTTATGTATACTTTTGATATTTCAAACCCCCTTACTAAAAATTCTGGCTCCGCCATCATGAGCTAGGATGGTATTATTTGTATTTCATATTTGATTAATGAACAAGAGTAACATATACTAGTGCATTTTCATCATATTGCAGCTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTAT</genome_strand>
        <mrna_strand>CTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG......................................................................................................................................................................................................CTGCAGTCGGCCCAGGATTTATACTACAGGACATATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256989" ref_strand="+" ref_description="SGN-E256989 [cLEG-44-J2]">
      <seq>tgagcttgttgatcagtcagttgatttcgcatctgattcaattgcaccaattgataaaagaagtcgctcggagcatgccaatgcgcaaagggggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaagatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgttatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaatgttgtcgatggatcaacaaccttccgctctgccactcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93062" stop="91877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92762" g_stop="92179" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E256989" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92762" e_stop="92179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG</genome_strand>
        <mrna_strand>TGAGCTTGTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCACCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGGGGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAAGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTTATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256084" ref_strand="+" ref_description="SGN-E256084 [cLEG-37-O3]">
      <seq>gcgatgcttgcgtctttaacaactcatgatgaggatgttttcatgacggctttaggaaaaatgccatcttgggtgagttctacggataggaagctgatagagagttccggtaatgacattataaccaatgcactggtggcacaagatggaacgggggattatcaaacacttgctgaagcacttgctgcatctccagataagagtaagacgcgttatgtaatttatgtatagaggggaacttataaagagactgttgtggtggctagcaattgcatgaacttgctgattgtcggtgatggaatgtatgctactaccattactggtagcctcaatgttgccgatggatcaacaaccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92851" stop="91894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92551" g_stop="92194" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E256084" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92551" e_stop="92194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCC</genome_strand>
        <mrna_strand>GCGATGCTTGCGTCTTTAACAACTCATGATGAGGATGTTTTCATGACGGCTTTAGGAAAAATGCCATCTTGGGTGAGTTCTACGGATAGGAAGCTGATAGAGAGTTCCGGTAATGACATTATAACCAATGCACTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCACTTGCTGCATCTCCAGATAAGAGTAAGACGCGTTATGTAATTTATGTATAGAGGGGAACTTATAAAGAGACTGTTGTGGTGGCTAGCAATTGCATGAACTTGCTGATTGTCGGTGATGGAATGTATGCTACTACCATTACTGGTAGCCTCAATGTTGCCGATGGATCAACAACCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251675" ref_strand="+" ref_description="SGN-E251675 [cLEG-15-P19]">
      <seq>acacttgctgaagcagttgctgcagcaccagatgagagtaagacgcgttatgtaagtgatgtaaagaggggaacttataaagagaatgttgaggtggctagctataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccattactggtagccttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92686" stop="91920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92386" g_stop="92220" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E251675" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92386" e_stop="92220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAA</genome_strand>
        <mrna_strand>ACACTTGCTGAAGCAGTTGCTGCAGCACCAGATGAGAGTAAGACGCGTTATGTAAGTGATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCTATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697325" ref_strand="+" ref_description="SGN-E697325 [FA02AH03]">
      <seq>cccgtttcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgatggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgtatgctacgaccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93259" stop="91933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92962" g_stop="92233" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E697325" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92962" e_stop="92233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTA</genome_strand>
        <mrna_strand>CCCGTTTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGATGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708536" ref_strand="+" ref_description="SGN-E708536 [FA36AB09]">
      <seq>atattttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatggatgctacgaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93441" stop="91934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93141" g_stop="92234" g_length="908"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="908" r_length="908" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E708536" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93141" e_stop="92234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATT</genome_strand>
        <mrna_strand>ATATTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGGATGCTACGACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248229" ref_strand="+" ref_description="SGN-E248229 [cLEF-55-E23]">
      <seq>aattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctgagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93014" stop="91947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92714" g_stop="92247" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E248229" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92714" e_stop="92247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTA</genome_strand>
        <mrna_strand>AATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTGAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248338" ref_strand="+" ref_description="SGN-E248338 [cLEG-1-B10]">
      <seq>ttttaggaaaaatgccatcttgggtgatttcgatggataggaagctgatggagagggggggtaatgacattatagcgaatgcaccggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagttagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggctagcaataaaatgaacttgatgattgttggtgatggaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92802" stop="91947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92502" g_stop="92247" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E248338" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92502" e_stop="92247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTA</genome_strand>
        <mrna_strand>TTTTAGGAAAAATGCCATCTTGGGTGATTTCGATGGATAGGAAGCTGATGGAGAGGGGGGGTAATGACATTATAGCGAATGCACCGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTTAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710151" ref_strand="+" ref_description="SGN-E710151 [FA54BF11]">
      <seq>ccctttttactaaagctatgataaatggaacgaatcttgaagagctgttctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcacgatgaggatgttttcatgacggttttacgaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcaccagatggaacgggggattatccaacacttgctgaagccagttgctgcatcaccagataaaagtaagacgcgttatgtaatttatgtaaagaggggaacttataaacagaatgttgaggtggctaccaataaaatgaacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92917" stop="91967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92622" g_stop="92267" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E710151" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92622" e_stop="92267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAG-CAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATG</genome_strand>
        <mrna_strand>CCCTTTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGCTGTTCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCACGATGAGGATGTTTTCATGACGGTTTTACGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACCAGATGGAACGGGGGATTATCCAACACTTGCTGAAGCCAGTTGCTGCATCACCAGATAAAAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAACAGAATGTTGAGGTGGCTACCAATAAAATGAACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704134" ref_strand="+" ref_description="SGN-E704134 [FA23BG08]">
      <seq>ggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93419" stop="91987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93119" g_stop="92287" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E704134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93119" e_stop="92287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTA</genome_strand>
        <mrna_strand>GGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706129" ref_strand="+" ref_description="SGN-E706129 [FA29AD05]">
      <seq>catagtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93442" stop="92005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93142" g_stop="92305" g_length="838"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="838" r_length="838" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E706129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93142" e_stop="92305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAG</genome_strand>
        <mrna_strand>CATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704514" ref_strand="+" ref_description="SGN-E704514 [FA24CA08]">
      <seq>atagtttgcaaacttctaaaatggctaatcctcaacaacnctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagagggggaacttataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93441" stop="92007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93141" g_stop="92307" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="837" r_length="837" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E704514" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93141" e_stop="92307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAAC-CTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGA-GGGGAACTTATAA</genome_strand>
        <mrna_strand>ATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACNCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGGAACTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259631" ref_strand="+" ref_description="SGN-E259631 [cLEG-42-K19]">
      <seq>gcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93120" stop="92007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92820" g_stop="92307" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E259631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92820" e_stop="92307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAA</genome_strand>
        <mrna_strand>GCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719079" ref_strand="+" ref_description="SGN-E719079 [FC06CG06]">
      <seq>ggtatcaaaacactcaacacacatagtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93462" stop="92023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93163" g_stop="92323" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="841" r_length="841" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E719079" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93163" e_stop="92323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCAAAACACTCAACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAA</genome_strand>
        <mrna_strand>GGTATCAAAACACTCAACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703476" ref_strand="+" ref_description="SGN-E703476 [FA21CD12]">
      <seq>acatagtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctgcagcaccagataagagtaagacgcgttatgtaatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93443" stop="92026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93143" g_stop="92326" g_length="818"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="818" r_length="818" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E703476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93143" e_stop="92326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATG</genome_strand>
        <mrna_strand>ACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250229" ref_strand="+" ref_description="SGN-E250229 [cLEG-11-H23]">
      <seq>tttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaacnnngtgacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaagatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaaccacttgctgaagcagttgctgcagcaccagattagagtaagacgcgttatgtaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93169" stop="92028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92869" g_stop="92328" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E250229" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92869" e_stop="92328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAA-CACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTA</genome_strand>
        <mrna_strand>TTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACNNNGTGACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAAGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACCACTTGCTGAAGCAGTTGCTGCAGCACCAGATTAGAGTAAGACGCGTTATGTAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704689" ref_strand="+" ref_description="SGN-E704689 [FA25AA01]">
      <seq>atagtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93441" stop="92065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93141" g_stop="92365" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E704689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93141" e_stop="92365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTG</genome_strand>
        <mrna_strand>ATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722604" ref_strand="+" ref_description="SGN-E722604 [FC17DB02]">
      <seq>aatcggccgaattggtatcaaaacactcaacacacatagtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcaaatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93466" stop="92066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93163" g_stop="92366" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="811" r_length="798" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E722604" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93163" e_stop="92366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCAAAACACTCAACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCT</genome_strand>
        <mrna_strand>GGTATCAAAACACTCAACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAAATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704082" ref_strand="+" ref_description="SGN-E704082 [FA23BC04]">
      <seq>cacatagtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctgaagcagttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93444" stop="92066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93144" g_stop="92366" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E704082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93144" e_stop="92366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCT</genome_strand>
        <mrna_strand>CACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259417" ref_strand="+" ref_description="SGN-E259417 [cLEG-43-L2]">
      <seq>ctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcangatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93277" stop="92077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92977" g_stop="92377" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E259417" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92977" e_stop="92377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTG</genome_strand>
        <mrna_strand>CTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCANGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269975" ref_strand="+" ref_description="SGN-E269975 [cLEM-7-J9]">
      <seq>ttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93239" stop="92077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92939" g_stop="92377" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92939" e_stop="92377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTG</genome_strand>
        <mrna_strand>TTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258976" ref_strand="+" ref_description="SGN-E258976 [cLEG-41-F10]">
      <seq>ctgcaggcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggattatcaaacacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93121" stop="92078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92829" g_stop="92378" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E258976" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92829" e_stop="92378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCT</genome_strand>
        <mrna_strand>CTGCAG-GCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256100" ref_strand="+" ref_description="SGN-E256100 [cLEG-37-M12]">
      <seq>tcttgagcttattgatcagtcagttgatttcgcatctgattcaatggcatcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagtgggctaattggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctagatagctaaggtagcattaccgatgcttgcgtttttgacaactcatgatgaggatgttttcatgacggttttaagaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttctggtaaggacattatagcgaatgcaatggtggcacaagatggaacggaggattatcaaacacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93065" stop="92079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92765" g_stop="92379" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E256100" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92765" e_stop="92379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGC</genome_strand>
        <mrna_strand>TCTTGAGCTTATTGATCAGTCAGTTGATTTCGCATCTGATTCAATGGCATCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTGGGCTAATTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTAGATAGCTAAGGTAGCATTACCGATGCTTGCGTTTTTGACAACTCATGATGAGGATGTTTTCATGACGGTTTTAAGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCTGGTAAGGACATTATAGCGAATGCAATGGTGGCACAAGATGGAACGGAGGATTATCAAACACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256193" ref_strand="+" ref_description="SGN-E256193 [cLEG-37-G24]">
      <seq>ctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagatggaacgggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93277" stop="92093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92977" g_stop="92393" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E256193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92977" e_stop="92393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGAT</genome_strand>
        <mrna_strand>CTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708347" ref_strand="+" ref_description="SGN-E708347 [FA35CA11]">
      <seq>cgcttttagtgaaatggctaatcctcaacaacctgttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaaaattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcacagagttggctaagtggtgtgcttactaaccacgttacatgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaacgtagcattagcgatgcttgcgtctttgacaactcaagatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatgcagtggtggcacaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93425" stop="92105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93135" g_stop="92405" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E708347" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93135" e_stop="92405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAACTTCTAAAATGGCTAATCCTCAACAACCT-TTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGAT</genome_strand>
        <mrna_strand>CGC-TTTTAGTGAAATGGCTAATCCTCAACAACCTGTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAAATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCACAGAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACATGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAACGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAAGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271780" ref_strand="+" ref_description="SGN-E271780 [cLEM-8-K1]">
      <seq>aaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgttggttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacattatagcgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93390" stop="92122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93090" g_stop="92422" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271780" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93090" e_stop="92422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATG</genome_strand>
        <mrna_strand>AAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTGGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254165" ref_strand="+" ref_description="SGN-E254165 [cLEG-34-I10]">
      <seq>ctatgtaaaactgtttaagatttccaactctgtctcagttatgtcgctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaggacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93261" stop="92131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92977" g_stop="92431" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254165" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92977" e_stop="92431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTA</genome_strand>
        <mrna_strand>CTATGTAAAACTGTTTAAGATTTCCAACTCTGTCTCAGTTATGTCGCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263086" ref_strand="+" ref_description="SGN-E263086 [cLEG-59-D12]">
      <seq>tttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgatgatgttttcatgacggttttacgaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttcgggtaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93346" stop="92136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93046" g_stop="92436" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E263086" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93046" e_stop="92436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGA</genome_strand>
        <mrna_strand>TTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGATGATGTTTTCATGACGGTTTTACGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697453" ref_strand="+" ref_description="SGN-E697453 [FA03AA07]">
      <seq>ggctgcaggaattggcacgacgcgtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggataggaagctgatggagagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93438" stop="92145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93137" g_stop="92445" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="717" r_length="693" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E697453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93137" e_stop="92445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTC</genome_strand>
        <mrna_strand>TTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245235" ref_strand="+" ref_description="SGN-E245235 [cLEF-44-F3]">
      <seq>gatatccaatggaaccgtcacaacataatcagatggacataccattctgatgaaatatttagttaactatgtccatcaaatgaacaatgcacttccagtggttcgcaaaatgaagaatcagatcaatgacattactcaacacggaggtttcaccgatagaaatgagcttcttgatcagtcagttgattacgcatctgattcaattgccccaattgataaaagaagtcaatcggagcatgccaatgcgcaaagatggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgagttcgatggatagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93224" stop="92161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92924" g_stop="92461" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E245235" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92924" e_stop="92461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGA</genome_strand>
        <mrna_strand>GATATCCAATGGAACCGTCACAACATAATCAGATGGACATACCATTCTGATGAAATATTTAGTTAACTATGTCCATCAAATGAACAATGCACTTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTACTCAACACGGAGGTTTCACCGATAGAAATGAGCTTCTTGATCAGTCAGTTGATTACGCATCTGATTCAATTGCCCCAATTGATAAAAGAAGTCAATCGGAGCATGCCAATGCGCAAAGATGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248419" ref_strand="+" ref_description="SGN-E248419 [cLEG-1-H24]">
      <seq>aactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacagcagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93252" stop="92175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92952" g_stop="92475" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E248419" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92952" e_stop="92475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAG</genome_strand>
        <mrna_strand>AACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAGCAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720597" ref_strand="+" ref_description="SGN-E720597 [FC11BA11]">
      <seq>tttgttataactttgtttgttgctctcttcttaattgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggcagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93346" stop="92177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93046" g_stop="92477" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E720597" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93046" e_stop="92477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTG</genome_strand>
        <mrna_strand>TTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAATTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGCAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249608" ref_strand="+" ref_description="SGN-E249608 [cLEF-56-G6]">
      <seq>tgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaggaaaaatgccatcttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93137" stop="92178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92837" g_stop="92478" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E249608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92837" e_stop="92478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGT</genome_strand>
        <mrna_strand>TGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271787" ref_strand="+" ref_description="SGN-E271787 [cLEM-8-M1]">
      <seq>acacacatagtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacgcacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatgacggttttaagaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93447" stop="92189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93147" g_stop="92489" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271787" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93147" e_stop="92489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATG</genome_strand>
        <mrna_strand>ACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACGCACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAAGAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247774" ref_strand="+" ref_description="SGN-E247774 [cLEF-42-D8]">
      <seq>gtttgcaaacttctaaaatggctaatcctcaacaacctgtgttaaggaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93438" stop="92206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93138" g_stop="92506" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E247774" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93138" e_stop="92506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGA</genome_strand>
        <mrna_strand>GTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTGTGTTAAGGAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697369" ref_strand="+" ref_description="SGN-E697369 [FA02CD01]">
      <seq>aaacacaccacccatatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcacttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataactggaacgaatcttgaacagttgatctccagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93390" stop="92210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93090" g_stop="92509" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E697369" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93090" e_stop="92509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCA</genome_strand>
        <mrna_strand>AAACACACCACCCATATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCACTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAACTGGAACGAATCTTGAACAGTTGATCTCCAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698774" ref_strand="+" ref_description="SGN-E698774 [FA07CC01]">
      <seq>taaaaaacacaaacaaaatccaataatcagcggcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgtctttgacaactcaggatgaggatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93393" stop="92211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93093" g_stop="92511" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E698774" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93093" e_stop="92511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTT</genome_strand>
        <mrna_strand>TAAAAA-ACACAAACAAAATCCAATAATCAGCGGCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250693" ref_strand="+" ref_description="SGN-E250693 [cLEG-7-G21]">
      <seq>gcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcgagagctaaggtagcattagcgatgcttgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93434" stop="92239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93134" g_stop="92539" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E250693" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93134" e_stop="92539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGT</genome_strand>
        <mrna_strand>GCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247534" ref_strand="+" ref_description="SGN-E247534 [cLEF-42-G4]">
      <seq>acacacatagtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93447" stop="92270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93147" g_stop="92570" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E247534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93147" e_stop="92570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCG</genome_strand>
        <mrna_strand>ACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247873" ref_strand="+" ref_description="SGN-E247873 [cLEF-47-G16]">
      <seq>aaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93432" stop="92272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93132" g_stop="92572" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E247873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93132" e_stop="92572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCT</genome_strand>
        <mrna_strand>AAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268250" ref_strand="+" ref_description="SGN-E268250 [cLEM-3-I6]">
      <seq>taatcctcaacaacctttgttaataaaaacaccacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcaccaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaaccaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgaagagttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93416" stop="92272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93116" g_stop="92572" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268250" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93116" e_stop="92572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCTCAACAACCTTTGTTAATAAAAACA-CACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCA-CAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAA-CAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCT</genome_strand>
        <mrna_strand>TAATCCTCAACAACCTTTGTTAATAAAAACACCACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACCAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACCAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271048" ref_strand="+" ref_description="SGN-E271048 [cLEM-22-J6]">
      <seq>acatagtttgcaaacttctaaaatggctaatcctcaacaacctttgttgataaaaacacacaaacaaaatccaatgatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93443" stop="92289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93143" g_stop="92589" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271048" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93143" e_stop="92589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAA</genome_strand>
        <mrna_strand>ACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTGATAAAAACACACAAACAAAATCCAATGATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697386" ref_strand="+" ref_description="SGN-E697386 [FA02CH04]">
      <seq>ctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93248" stop="92293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92948" g_stop="92593" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E697386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92948" e_stop="92593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAA</genome_strand>
        <mrna_strand>CTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255824" ref_strand="+" ref_description="SGN-E255824 [cLEG-35-O1]">
      <seq>ctctcttcttagttgctccatatcaagttgagactaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtgtctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaaattttagttaactatgtgcatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacagggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93324" stop="92301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93024" g_stop="92601" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E255824" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93024" e_stop="92601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGAT</genome_strand>
        <mrna_strand>CTCTCTTCTTAGTTGCTCCATATCAAGTTGAGACTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTGTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAAATTTTAGTTAACTATGTGCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACAGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257694" ref_strand="+" ref_description="SGN-E257694 [cLEG-39-K10]">
      <seq>tttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93346" stop="92302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93046" g_stop="92602" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E257694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93046" e_stop="92602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGA</genome_strand>
        <mrna_strand>TTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697486" ref_strand="+" ref_description="SGN-E697486 [FA03AE04]">
      <seq>gctgcaggaattcggcacgacccttaatttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgccttggatgagcttgattccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93447" stop="92314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93137" g_stop="92614" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="552" r_length="525" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E697486" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93137" e_stop="92614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTG-CTTGGATGAGCTTGATTCCTTTA</genome_strand>
        <mrna_strand>TTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCCTTGGATGAGCTTGATTCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246831" ref_strand="+" ref_description="SGN-E246831 [cLEF-41-M23]">
      <seq>ttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93436" stop="92329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93136" g_stop="92629" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E246831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93136" e_stop="92629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATG</genome_strand>
        <mrna_strand>TTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248227" ref_strand="+" ref_description="SGN-E248227 [cLEF-55-E9]">
      <seq>taatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatgcgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93416" stop="92374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93116" g_stop="92674" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E248227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93116" e_stop="92674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAA</genome_strand>
        <mrna_strand>TAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269894" ref_strand="+" ref_description="SGN-E269894 [cLEM-17-H12]">
      <seq>gcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagcatgccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93434" stop="92380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93134" g_stop="92680" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93134" e_stop="92680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATG</genome_strand>
        <mrna_strand>GCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272240" ref_strand="+" ref_description="SGN-E272240 [cLEM-19-E18]">
      <seq>tagtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgatcagtcagttgatttcgcatctgattcaattgcagcaattgataaaagaagtcgctcggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93440" stop="92388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93140" g_stop="92688" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93140" e_stop="92688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCA</genome_strand>
        <mrna_strand>TAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245394" ref_strand="+" ref_description="SGN-E245394 [cLEF-53-P18]">
      <seq>acacatagtttgcaaacttctaaaatggctaatcctcaacaaccgttgtttattaaaacggacaaaccaaatccaataatcagcttcaagatcctcagttttggtataactttgtttggtgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagttaactatgtccatcaaatgaacaatgcaattccagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctttaactgattgtcttgagcttcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93445" stop="92450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93145" g_stop="92750" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E245394" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93145" e_stop="92750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGAT</genome_strand>
        <mrna_strand>ACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCGTTGTTTATTAAAACGGACAAACCAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGGTATAACTTTGTTTGGTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253240" ref_strand="+" ref_description="SGN-E253240 [cLEG-26-A13]">
      <seq>aaacttctaaaatggctaatcctcaacaacctttgccaataaaggcacacagacaaaatccaatagtcagcttcaagatcctcagctttgttataactttgggcgaagctctcttcttagatgctccatatcaaattgagattaaacatcctaatctatgtaaaactgcacaagattcccaactctgactcagctatgtctctgatttgatatccaatgaaattgccacagcagaatcagatggacatagtattctgatgaaatctttagttaactatgtccatcaaatgaacaatgcaatttcagtggttcgcaaaatgaagaatcagatcaatgacattcgtcaacacggggctctaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93432" stop="92470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93132" g_stop="92770" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E253240" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93132" e_stop="92770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTG</genome_strand>
        <mrna_strand>AAACTTCTAAAATGGCTAATCCTCAACAACCTTTGCCAATAAAGGCACACAGACAAAATCCAATAGTCAGCTTCAAGATCCTCAGCTTTGTTATAACTTTGGGCGAAGCTCTCTTCTTAGATGCTCCATATCAAATTGAGATTAAACATCCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGACTCAGCTATGTCTCTGATTTGATATCCAATGAAATTGCCACAGCAGAATCAGATGGACATAGTATTCTGATGAAATCTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTTCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTCTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392556" ref_strand="+" ref_description="SGN-E392556 [TUS-35-K6]">
      <seq>atttcacatagtttgcaaacttctaaaatggctaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagtgaacttttttttttcttatgaacaatgcaattcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93444" stop="92528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93148" g_stop="92828" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E392556" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93148" e_stop="92828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAAC-TATGTCCATCAAATGAACAATGCAATTCCA</genome_strand>
        <mrna_strand>ATTTCACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTGAACTTTTTTTTTTCTTATGAACAATGCAATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249646" ref_strand="+" ref_description="SGN-E249646 [cLEF-56-D5]">
      <seq>ttgcaaacttctaaaatggctaatcctcaacaacctttgttaataagggcacacaaacaaaatccaataatcagcttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctctatatcaagttgagattaaacattctagtatatgtgaaactgcgcaagattcccaactctgtctcagttatgtctctgatttgatatccaatgaaattgtcacaacagaatcagatggacatagtattctgatgaaatttttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93436" stop="92562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93136" g_stop="92862" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E249646" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93136" e_stop="92862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGT</genome_strand>
        <mrna_strand>TTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAGGGCACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCTATATCAAGTTGAGATTAAACATTCTAGTATATGTGAAACTGCGCAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393959" ref_strand="+" ref_description="SGN-E393959 [TUS-39-F1]">
      <seq>tttgcaaacttcagacctttttaatcctcaacaacctttgttaataaaaacacacaaacaaaatccaataatcaggttcaagatcctcagttttgttataactttgtttgttgctctcttcttagttgctccatatcaagttgagattaaacattctaatctatgtaaaactgcacaagattccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="93416" stop="92652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93137" g_stop="92952" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E393959" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>186</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93137" e_stop="92952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCA</genome_strand>
        <mrna_strand>TTTGCAAACTTCAGACCTTTTTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGGTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292780" ref_strand="+" ref_description="SGN-E292780 [cLET-11-P10]">
      <seq>ggtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaagatgtttttgcactaatggccttttgaggatttacatccaatttcnaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101305" stop="100395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101006" g_stop="100677" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E292780" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101006" e_stop="100677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTAATGGCCTTTTGAGGATTTACATCCAATTACTTTCAAATGCAAAATTTA</genome_strand>
        <mrna_strand>GGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTAATGGCCTTTTGAGGATTTACATCCAATTTCNAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393731" ref_strand="+" ref_description="SGN-E393731 [TUS-42-M10](-)">
      <seq>agacttaccagagaggtggtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaagatgtttatgcactaatggccttttgaggatttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101690" stop="100404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101390" g_stop="101313" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100701" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="587" r_length="509" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E393731" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101390" e_stop="101313"/>
          <exon e_start="101209" e_stop="100701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTAATGGCCTTTTGAGGATTTACATCC</genome_strand>
        <mrna_strand>AGACTTACCAGAGAGGTGGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTATGCACTAATGGCCTTTTGAGGATTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398355" ref_strand="+" ref_description="SGN-E398355 [TUS-42-O16](-)">
      <seq>ggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaagatgtttttgcactaatggccttttgaggattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101703" stop="100404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101403" g_stop="101313" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100702" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="599" r_length="508" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E398355" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101403" e_stop="101313"/>
          <exon e_start="101209" e_stop="100702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTAATGGCCTTTTGAGGATTTACATC</genome_strand>
        <mrna_strand>GGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTAATGGCCTTTTGAGGATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396349" ref_strand="-" ref_description="SGN-E396349 [TUS-48-D8]">
      <seq>atggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagttttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttttatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaagatgtttttgcactaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101629" stop="100424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101329" g_stop="101313" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100725" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="502" r_length="485" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="525"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E396349" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396349" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101329" e_stop="101313"/>
          <exon e_start="101209" e_stop="100725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTA</genome_strand>
        <mrna_strand>ATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTTTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTTTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302107" ref_strand="-" ref_description="SGN-E302107 [cLEW-19-G10]">
      <seq>gaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaagatgtttttgcactaccaaaaaaaaaaaaaaaaaactcggactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101510" stop="100425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101317" g_stop="101313" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100725" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="490" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="511"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E302107" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302107" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101317" e_stop="101313"/>
          <exon e_start="101209" e_stop="100725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTA</genome_strand>
        <mrna_strand>GAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734920" ref_strand="+" ref_description="SGN-E734920 [LB13DG10]">
      <seq>tgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaagatgtttttgcactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101487" stop="100424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101187" g_stop="100725" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="475"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E734920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101187" e_stop="100725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTA</genome_strand>
        <mrna_strand>TGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732781" ref_strand="+" ref_description="SGN-E732781 [LB03AE08]">
      <seq>gttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaagatgtttttgccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101447" stop="100424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101147" g_stop="100731" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="454"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E732781" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101147" e_stop="100731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTT</genome_strand>
        <mrna_strand>GTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278240" ref_strand="+" ref_description="SGN-E278240 [cLER-9-C8]">
      <seq>aaaaacatcttagcccaatcacaatgttcattcatatggcttctccaatgaggcccaaaccatatcaagtacaaagcccaaaaggcctaaaagattattcaaggaacgaccaaaactaaaatctacttttttccaggggagtttcgaaatagaaataaatcaagagggaatagccaaagttaacacaatgactttcatcttgaagactcttattcatcatccccttaccaatttatcatcaccaccacaaccatactcacttatctaggaaaaactaatatttctcataatccttgcttagaaaactataattacattcaagcatcagcaatttcagcttcatcagctgcagccaacataagctccgggaggacgcttgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="100431" stop="101414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100731" g_stop="101109" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E278240" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100731" e_stop="101109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATCTTAGCCCAATCACAATGTTCATTCATATGGCTTCTCCAATGAGGCCCAAACCATATCAAGTACAAAGCCCAAAAGGCCTAAAAGATTATTCAAGGAACGACCAAAACTAAAATCTACTTTCTTCCATAAAAGTTTCGAAATAGAAATAAATCAAAATAAAATAGCCAAAGTTAACACAATGACTTTCATCTTGAAGACTCTTATTCATCATCCCCTTACCAATTTATCATCACCACCACAACCATACTCACTTATCTAGGAAAAACTAATATTTCTCATAATCCTTGCTTAGAAAACTATAATTACATTCAAGCATCAGCAATTTCAGCTTCATCAGCTGCAGCCAACATAAGCTCCGGGAGGACGCTTG</genome_strand>
        <mrna_strand>AAAAACATCTTAGCCCAATCACAATGTTCATTCATATGGCTTCTCCAATGAGGCCCAAACCATATCAAGTACAAAGCCCAAAAGGCCTAAAAGATTATTCAAGGAACGACCAAAACTAAAATCTACTTTTTTCCAGGGGAGTTTCGAAATAGAAATAAATCAAGAGGGAATAGCCAAAGTTAACACAATGACTTTCATCTTGAAGACTCTTATTCATCATCCCCTTACCAATTTATCATCACCACCACAACCATACTCACTTATCTAGGAAAAACTAATATTTCTCATAATCCTTGCTTAGAAAACTATAATTACATTCAAGCATCAGCAATTTCAGCTTCATCAGCTGCAGCCAACATAAGCTCCGGGAGGACGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284409" ref_strand="-" ref_description="SGN-E284409 [cLER-16-M16]">
      <seq>atgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101663" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101363" g_stop="101313" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100733" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="528" r_length="477" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E284409" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284409" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101363" e_stop="101313"/>
          <exon e_start="101209" e_stop="100733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTT</genome_strand>
        <mrna_strand>ATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284763" ref_strand="+" ref_description="SGN-E284763 [cLES-3-K14]">
      <seq>ttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101280" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100980" g_stop="100733" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E284763" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100980" e_stop="100733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTT</genome_strand>
        <mrna_strand>TTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257120" ref_strand="-" ref_description="SGN-E257120 [cLEG-46-A9]">
      <seq>aatgttatggaggctaagattgtggtcagctcttgtggccacgacggcccccatgggcgccaccggtgtaaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101843" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101543" g_stop="101313" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100734" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="708" r_length="476" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E257120" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257120" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101543" e_stop="101313"/>
          <exon e_start="101209" e_stop="100734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGG-CCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTT</genome_strand>
        <mrna_strand>AATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCCATGGGCGCCACCGGTGTAAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254122" ref_strand="-" ref_description="SGN-E254122 [cLEG-34-E21]">
      <seq>ggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101666" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101366" g_stop="101313" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100734" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="530" r_length="476" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254122" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254122" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101366" e_stop="101313"/>
          <exon e_start="101209" e_stop="100734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTT</genome_strand>
        <mrna_strand>GGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396439" ref_strand="+" ref_description="SGN-E396439 [TUS-47-K9](-)">
      <seq>catggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101853" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101553" g_stop="101313" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100739" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="712" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="725"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E396439" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101553" e_stop="101313"/>
          <exon e_start="101209" e_stop="100739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAG</genome_strand>
        <mrna_strand>CATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390975" ref_strand="+" ref_description="SGN-E390975 [TUS-47-C19](-)">
      <seq>cccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgtttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaactcccgcccacctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101782" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101483" g_stop="101313" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100739" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="645" r_length="473" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="655"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E390975" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101483" e_stop="101313"/>
          <exon e_start="101209" e_stop="100739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTG-TTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTG--GAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAG</genome_strand>
        <mrna_strand>CCCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTCCCGCCCACCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281798" ref_strand="-" ref_description="SGN-E281798 [cLER-14-L19]">
      <seq>gaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagttttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101650" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101350" g_stop="101313" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100739" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="510" r_length="472" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="511" polyA_stop="544"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E281798" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281798" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101350" e_stop="101313"/>
          <exon e_start="101209" e_stop="100739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAG-TTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAG</genome_strand>
        <mrna_strand>GAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297558" ref_strand="-" ref_description="SGN-E297558 [cLET-28-K3]">
      <seq>gaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccgaactatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101510" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101317" g_stop="101313" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100739" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="476" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="503"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E297558" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297558" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101317" e_stop="101313"/>
          <exon e_start="101209" e_stop="100739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAG</genome_strand>
        <mrna_strand>GAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280439" ref_strand="-" ref_description="SGN-E280439 [cLER-1-J8]">
      <seq>gggattgcccaacgcctttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctaaataagtgagtatggttgtggtggtcatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttaaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaagccatatgaatgaacattgtgattgggctaaaaaaaaaaaataaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101444" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101144" g_stop="100739" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="431"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E280439" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280439" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101144" e_stop="100739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAG</genome_strand>
        <mrna_strand>GGGATTGCCCAACGCCTTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAAATAAGTGAGTATGGTTGTGGTGGTCATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTAAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260739" ref_strand="+" ref_description="SGN-E260739 [cLEG-54-J6]">
      <seq>aaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatnggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaaccatatgaatgaacattgtgattgggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101873" stop="100441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101573" g_stop="101313" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100741" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="730" r_length="469" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E260739" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101573" e_stop="101313"/>
          <exon e_start="101209" e_stop="100741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTAT-GGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTA</genome_strand>
        <mrna_strand>AACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATNGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAA-CCATATGAATGAACATTGTGATTGGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621985" ref_strand="+" ref_description="SGN-E621985 [72347]">
      <seq>ccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgtngggattgccaacgcncttgatggaactgcagaaacaagcatcctcccagagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagtaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgaatgataaattggcaaggggatgatgaataagagtctttaagatgaaagtcactgtgttaactttgactattttcttttgattatttcgatttcgaaactttgtatgtgaaaaaagtggtagattttagttttggtcgttgaataatcttatgggccttttgggctttgttttggtacttgatatggtttgggcctcattggagaggccatataaatgaacattgtgattgggccaaaaaaaaaaaaaaaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101510" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101321" g_stop="101313" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100745" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="480" r_length="471" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="484" polyA_stop="504"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E621985" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101321" e_stop="101313"/>
          <exon e_start="101209" e_stop="100745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTG-ATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTT-TATG-GAAGAAA---GTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGC-----TTT-GTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGG</genome_strand>
        <mrna_strand>CCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTNGGGATTG-CCAACGCNCTTGATGGAACTGCAGAAACAAGCATCCTCCCAGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGTAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGAATGATAAATTGGCAAGGGGATGATGAATAAGAGTCTTTAAGATGAAAGTCACTGTGTTAACTTTGACTATTTTCTTTTGA-TTATTTCGATTTCGAAACTTTGTATGTGAAAAAAGTGGTAGATTTTAGTTTTGGTCG----TTGAATAATCTTATGGGCCTTTTGGGCTTTGTTTTGGTACTTGATATGGTTTGGGCCTCATTGGAGAGGCCATATAAATGAACATTGTGATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260781" ref_strand="+" ref_description="SGN-E260781 [cLEG-55-C14]">
      <seq>gaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttgatatggtttgggcctcattggagaaagcatatgaatgaacattgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101917" stop="100448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101617" g_stop="101313" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100748" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="767" r_length="462" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E260781" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101617" e_stop="101313"/>
          <exon e_start="101209" e_stop="100748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGAT</genome_strand>
        <mrna_strand>GAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAAGCATATGAATGAACATTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577763" ref_strand="+" ref_description="SGN-E577763 [LE15CH11]">
      <seq>gaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagggtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagagagtagattttagttttggtcgttccctgaattatcttttaggccttttgggctttgtacttgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101917" stop="100491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101617" g_stop="101313" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100791" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="724" r_length="419" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E577763" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101617" e_stop="101313"/>
          <exon e_start="101209" e_stop="100791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATG</genome_strand>
        <mrna_strand>GAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGGGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAGAGTAGATTTTAGTTTTGGTCGTTCCCTGAATTATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371320" ref_strand="+" ref_description="SGN-E371320 [TUS-27-O21](-)">
      <seq>aatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttttggtcgttccttgaataatcttttaggccttttgggctttgtacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101860" stop="100493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101560" g_stop="101313" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100796" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="662" r_length="414" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="673"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E371320" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101560" e_stop="101313"/>
          <exon e_start="101209" e_stop="100796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTG</genome_strand>
        <mrna_strand>AATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601637" ref_strand="-" ref_description="SGN-E601637 [54681]">
      <seq>cccagaaccatgacacacaatcctgcatggaccccaatgttatggaggctaaggtttggttagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggcttaggagcattggcatgattaacagtgttcctggaatgaaagctttggacatgaacgctgctgaggacgcaattgttagacttaccagagaagttgtacctggaatgattgttacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacgtcgccctacgggcgttgggattgcccaacgcccttgatggaactgcagaaacaagcatcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagtaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgaatgataaattggcaaggggatgatgaataagagtctttaagatgaaagtcactgtgttaactttggctattttcttttgattatttcgatttcgaaactttgtatgtgaaaaaagtggtagattttagttttggtcgttgaataaacttatgggcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101878" stop="100535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101578" g_stop="101313" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100812" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="664" r_length="399" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E601637" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601637" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101578" e_stop="101313"/>
          <exon e_start="101209" e_stop="100812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTG-ATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTT-TATG-GAAGAAA---GTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTT</genome_strand>
        <mrna_strand>CCCAGAACCATGACACACAATCCTGCATGGACCCCAATGTTATGGAGGCTAAGGTT-TGGTTAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTTAGGAGCATTGGCATGATTAACAGTGTTCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCAATTGTTAGACTTACCAGAGAAGTTGTACCTGGAATGATTGTTACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACGTCGCCCTACGGGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCATCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGTAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGAATGATAAATTGGCAAGGGGATGATGAATAAGAGTCTTTAAGATGAAAGTCACTGTGTTAACTTTGGCTATTTTCTTTTGA-TTATTTCGATTTCGAAACTTTGTATGTGAAAAAAGTGGTAGATTTTAGTTTTGGTCG----TTGAATAAACTTATGGGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260114" ref_strand="+" ref_description="SGN-E260114 [cLEG-52-E23]">
      <seq>tcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101460" stop="100543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101160" g_stop="100843" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E260114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101160" e_stop="100843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTT</genome_strand>
        <mrna_strand>TCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391940" ref_strand="+" ref_description="SGN-E391940 [TUS-27-F20](-)">
      <seq>acggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttttaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagttttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaagaaagtagattttagtttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101800" stop="100543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101500" g_stop="101313" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100847" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="551" r_length="363" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="575"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E391940" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101500" e_stop="101313"/>
          <exon e_start="101209" e_stop="100847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTA</genome_strand>
        <mrna_strand>ACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTTTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTTTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273169" ref_strand="-" ref_description="SGN-E273169 [cLEM-24-F8]">
      <seq>catggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctattttattttgatttatttctatttcgaaacttttatggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101853" stop="100557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101553" g_stop="101313" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100856" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="595" r_length="354" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E273169" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273169" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101553" e_stop="101313"/>
          <exon e_start="101209" e_stop="100856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAG</genome_strand>
        <mrna_strand>CATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597670" ref_strand="+" ref_description="SGN-E597670 [67541]">
      <seq>gttgtggtcagctcttgntggccacgacggccccatgggcgccaccggtgttaagaggcttaggagcattggcatgattaacagtgttcctggaatgaaagctttggacatgaacgctgctgaggacgcaattgttagacttaccagagaagttgtacctggaatgattgttacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgggcgttgggattgcccaacgcccttgatggaactgcagaaacaagcatcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagtaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgaatgataaattggcaaggggcatgatgaataagagtctttaagatgaaagtcactgtgttaactttggctattttcttttgattatttcgatttacaaacaaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101824" stop="100571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101525" g_stop="101313" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100862" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="563" r_length="349" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E597670" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101525" e_stop="101313"/>
          <exon e_start="101209" e_stop="100862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTGGTCAGCTCTTG-TGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTG-ATGATAAATTGGTAAGGGG-ATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGA</genome_strand>
        <mrna_strand>GTTGTGGTCAGCTCTTGNTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTTAGGAGCATTGGCATGATTAACAGTGTTCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCAATTGTTAGACTTACCAGAGAAGTTGTACCTGGAATGATTGTTACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGGGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCATCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGTAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGAATGATAAATTGGCAAGGGGCATGATGAATAAGAGTCTTTAAGATGAAAGTCACTGTGTTAACTTTGGCTATTTTCTTTTGA-TTATTTCGATTTACAAACAAAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297803" ref_strand="+" ref_description="SGN-E297803 [cLET-38-F19]">
      <seq>cagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctaaataagtgagtatggttgtggtggtgatgataaattgggaaggggatgatgaataaaagtcttcaagatgaaagtcattgcgttaactttggctattatattttgatatatttctatttcgaaacttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101469" stop="100564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101169" g_stop="100864" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E297803" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101169" e_stop="100864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATG</genome_strand>
        <mrna_strand>CAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAAATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGGAAGGGGATGATGAATAAAAGTCTTCAAGATGAAAGTCATTGCGTTAACTTTGGCTATTATATTTTGATATATTTCTATTTCGAAACTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414903" ref_strand="-" ref_description="SGN-E414903 [STM-20-I10]">
      <seq>tcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccatgacacacaatcctgcatggaccccaatgttatggaggctaaggttgtggtcagctcttgtggtcacgatggccccatgggcgccactggtgttaagaggcttaggagcattggcatgatcaacagtgttcctggaatgaaagctttggacatgaatgctgctgaggacgcgattgttagacttaccagagaagttgtacctggaatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgggcgttgggattgcccaacgcccttgatggaactgcagaaacaagcatcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattttagtttttctaagtaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgaatgataaattggcaaggggatgatgaataagagttttaagatgaaagtcactgtgttaactttggctattttcttttgatttacttggaattcgaaactttttatgtgaaaaaaaaggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102002" stop="100557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101702" g_stop="101313" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100867" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="734" r_length="344" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E414903" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414903" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101702" e_stop="101313"/>
          <exon e_start="101209" e_stop="100867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAG-TTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTG-ATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTT</genome_strand>
        <mrna_strand>TCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCATGACACACAATCCTGCATGGACCCCAATGTTATGGAGGCTAAGGTTGTGGTCAGCTCTTGTGGTCACGATGGCCCCATGGGCGCCACTGGTGTTAAGAGGCTTAGGAGCATTGGCATGATCAACAGTGTTCCTGGAATGAAAGCTTTGGACATGAATGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAAGTTGTACCTGGAATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGGGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCATCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTTTAGTTTTTCTAAGTAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGAATGATAAATTGGCAAGGGGATGATGAATAAGAGT-TTTAAGATGAAAGTCACTGTGTTAACTTTGGCTATTTTCTTTTGATTTACTTGGAATTCGAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412603" ref_strand="-" ref_description="SGN-E412603 [STM-16-F7]">
      <seq>gttgtggtcagctcttgtggtcacgatggccccatgggcgccactggtgttaagaggcttaggagcattggcatgatcaacagtgttcctggaatgaaagctttggacatgaatgctgctgaggacgcgattgttagacttaccagagaagttgtacctggaatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgggcgttgggattgcccaacgcccttgatggaactgcagaaacaagcatcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattttagtttttctaagtaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgaatgataaattggcaaggggatgatgaataagagttttaagatgaaagtcactgtgttaactttggctattttcttttgatttacttcgatttcgaaactttttatgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101824" stop="100552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101525" g_stop="101313" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100867" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="557" r_length="344" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="576"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E412603" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412603" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101525" e_stop="101313"/>
          <exon e_start="101209" e_stop="100867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAG-TTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTG-ATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTT</genome_strand>
        <mrna_strand>GTTGTGGTCAGCTCTTGTGGTCACGATGGCCCCATGGGCGCCACTGGTGTTAAGAGGCTTAGGAGCATTGGCATGATCAACAGTGTTCCTGGAATGAAAGCTTTGGACATGAATGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAAGTTGTACCTGGAATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGGGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCATCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTTTAGTTTTTCTAAGTAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGAATGATAAATTGGCAAGGGGATGATGAATAAGAGT-TTTAAGATGAAAGTCACTGTGTTAACTTTGGCTATTTTCTTTTGATTTACTTCGATTTCGAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616621" ref_strand="-" ref_description="SGN-E616621 [90090]">
      <seq>atcaggacagaaggcagctcacctcgccctacgggcgttgggattgcccaacgcccttgatggaactgcagaaacaagcatcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagtaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgaatgataaattggcaaggggatgatgaataagagtctttaagatgaaagtcactgtgttaactttggctattttcttttgattatttcgatttcgaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101483" stop="100572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101183" g_stop="100872" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="313" polyA_stop="328"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E616621" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616621" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101183" e_stop="100872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTG-ATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAA</genome_strand>
        <mrna_strand>ATCAGGACAGAAGGCAGCTCACCTCGCCCTACGGGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCATCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGTAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGAATGATAAATTGGCAAGGGGATGATGAATAAGAGTCTTTAAGATGAAAGTCACTGTGTTAACTTTGGCTATTTTCTTTTGA-TTATTTCGATTTCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735561" ref_strand="+" ref_description="SGN-E735561 [LC02AE12]">
      <seq>cggttcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataaatgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtcattgtgttaactttggctatttaattttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102697" stop="100587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102399" g_stop="102363" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101313" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="598" r_length="561" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101209" g_stop="100887" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="921" r_length="323" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E735561" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>921</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102399" e_stop="102363"/>
          <exon e_start="101873" e_stop="101313"/>
          <exon e_start="101209" e_stop="100887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTT</genome_strand>
        <mrna_strand>CGGTTCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAATGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTAATTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295469" ref_strand="+" ref_description="SGN-E295469 [cLET-23-A20]">
      <seq>gacggccccatgggcgccaccggtgttaagaggctcangagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagttnttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaataagagtcttcaagatgaaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101801" stop="100619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101501" g_stop="101313" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100919" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="480" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E295469" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101501" e_stop="101313"/>
          <exon e_start="101209" e_stop="100919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCA</genome_strand>
        <mrna_strand>GACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCANGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTNTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738389" ref_strand="+" ref_description="SGN-E738389 [LC13BH01]">
      <seq>cgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaaggggatgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102697" stop="100643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102398" g_stop="102363" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101313" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="597" r_length="561" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101209" g_stop="100943" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="864" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E738389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102398" e_stop="102363"/>
          <exon e_start="101873" e_stop="101313"/>
          <exon e_start="101209" e_stop="100943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAA</genome_strand>
        <mrna_strand>CGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702788" ref_strand="+" ref_description="SGN-E702788 [FA19CG10]">
      <seq>gtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaagggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102731" stop="100650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102431" g_stop="102363" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101313" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="630" r_length="561" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101209" g_stop="100950" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="890" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E702788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102431" e_stop="102363"/>
          <exon e_start="101873" e_stop="101313"/>
          <exon e_start="101209" e_stop="100950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGA</genome_strand>
        <mrna_strand>GTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738507" ref_strand="+" ref_description="SGN-E738507 [LC13DF07]">
      <seq>cgtgtttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgtggtggtgatgataaattggtaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102697" stop="100651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102398" g_stop="102363" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101313" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="597" r_length="561" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101209" g_stop="100951" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="856" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E738507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102398" e_stop="102363"/>
          <exon e_start="101873" e_stop="101313"/>
          <exon e_start="101209" e_stop="100951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGG</genome_strand>
        <mrna_strand>CGTGTTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736244" ref_strand="+" ref_description="SGN-E736244 [LC04DF05]">
      <seq>gtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagataagtgagtatggttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102697" stop="100677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102397" g_stop="102363" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101313" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="596" r_length="561" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101209" g_stop="100977" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="829" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E736244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102397" e_stop="102363"/>
          <exon e_start="101873" e_stop="101313"/>
          <exon e_start="101209" e_stop="100977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGT</genome_strand>
        <mrna_strand>GTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370666" ref_strand="+" ref_description="SGN-E370666 [TUS-27-M24](-)">
      <seq>aggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttttcctagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102063" stop="100691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101763" g_stop="101313" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="100987" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="674" r_length="223" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E370666" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101763" e_stop="101313"/>
          <exon e_start="101209" e_stop="100987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGA</genome_strand>
        <mrna_strand>AGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249628" ref_strand="+" ref_description="SGN-E249628 [cLEF-56-M4]">
      <seq>gaggaccttatcgtgaagaacggaggagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaaagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttctaagcaaggattatgagaaatattagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101939" stop="100701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101639" g_stop="101313" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101001" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="535" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E249628" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101639" e_stop="101313"/>
          <exon e_start="101209" e_stop="101001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTT</genome_strand>
        <mrna_strand>GAGGACCTTATCGTGAAGAACGGAGGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAA-AGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571897" ref_strand="+" ref_description="SGN-E571897 [30965]">
      <seq>gttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccatgacacacaatcctgcatggaccccaatgttatggaggctaaggttgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggcttaggagcattggcatgattaacagtgttcctggaatgaaagctttggacatgaacgctgctgaggacgcaattgttagacttaccagagaagttgtacctggaatgattgttacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgggcgttgggattgcccaacgcccttgatggaactgcagaaaacaagcatcctcccggaggcttatgttggctgcagctgatgaagctgaaattgtgatgcttgaatgtaattatagttttcctaagtaaaggattatgagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102179" stop="100710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101879" g_stop="101313" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101010" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="770" r_length="203" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E571897" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101879" e_stop="101313"/>
          <exon e_start="101209" e_stop="101010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAG-AAACAAGCGTCCTCCCGGA-GCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTT-CTAAG-CAAGGATTATGAGAAAT</genome_strand>
        <mrna_strand>GTTCAGGTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCATGACACACAATCCTGCATGGACCCCAATGTTATGGAGGCTAAGGTTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTTAGGAGCATTGGCATGATTAACAGTGTTCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCAATTGTTAGACTTACCAGAGAAGTTGTACCTGGAATGATTGTTACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGGGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAAACAAGCATCCTCCCGGAGGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTG-TGATGCTTGAATGTAATTATAGTTTTCCTAAGTAAAGGATTATGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269618" ref_strand="+" ref_description="SGN-E269618 [cLEM-2-L21]">
      <seq>acgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102049" stop="100731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101749" g_stop="101313" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101031" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="616" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101749" e_stop="101313"/>
          <exon e_start="101209" e_stop="101031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTC</genome_strand>
        <mrna_strand>ACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725349" ref_strand="+" ref_description="SGN-E725349 [FC26DD02]">
      <seq>aatcggccgaattgttgtcattgttggcgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattatagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102739" stop="100733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102435" g_stop="102363" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="85" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101313" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="646" r_length="561" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101209" g_stop="101033" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="823" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E725349" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102435" e_stop="102363"/>
          <exon e_start="101873" e_stop="101313"/>
          <exon e_start="101209" e_stop="101033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTT</genome_strand>
        <mrna_strand>TGTTGTCATTGTTGGCGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325360" ref_strand="+" ref_description="SGN-E325360 [cTOC-1-C7]">
      <seq>ttgtcactaactggtctttggttttccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaactgcagaaacaagcgtcctcccggagcttatgttggctgcagctgatgaagctgaaattgctgatgcttgaatgtaattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101902" stop="100737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101602" g_stop="101313" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101037" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="463" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E325360" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101602" e_stop="101313"/>
          <exon e_start="101209" e_stop="101037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATA</genome_strand>
        <mrna_strand>TTGTCACTAACTGGTCTTTGGTTTTCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248324" ref_strand="+" ref_description="SGN-E248324 [cLEG-1-B21]">
      <seq>tacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgagcgttgggattgcccaacgcccttgatggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102053" stop="100817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101753" g_stop="101313" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101117" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="534" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E248324" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101753" e_stop="101313"/>
          <exon e_start="101209" e_stop="101117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACT</genome_strand>
        <mrna_strand>TACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258026" ref_strand="+" ref_description="SGN-E258026 [cLEG-48-P6]">
      <seq>gaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtgggcacgacggccccatgggcgccacccggtgttaagaagctcangagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcagctcacctcgccctacgaagcgttgggattgcccaacgcccttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102785" stop="100823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102485" g_stop="102363" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101313" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="685" r_length="562" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101209" g_stop="101123" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="773" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E258026" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102485" e_stop="102363"/>
          <exon e_start="101873" e_stop="101313"/>
          <exon e_start="101209" e_stop="101123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCA-CCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACG-AGCGTTGGGATTGCCCAACGCCCTTGAT</genome_strand>
        <mrna_strand>GAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGGCACGACGGCCCCATGGGCGCCACCCGGTGTTAAGAAGCTCANGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAAGCGTTGGGATTGCCCAACGCCCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365875" ref_strand="+" ref_description="SGN-E365875 [cLPT-11-C10]">
      <seq>aaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccatgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggatgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacagaaggcggctcacctcgccctacgagcgttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="101970" stop="100841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101670" g_stop="101313" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101141" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="427" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E365875" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101670" e_stop="101313"/>
          <exon e_start="101209" e_stop="101141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGA</genome_strand>
        <mrna_strand>AAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCATGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGATGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCGGCTCACCTCGCCCTACGAGCGTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245244" ref_strand="+" ref_description="SGN-E245244 [cLEF-44-H9]">
      <seq>tgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatcaggacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102099" stop="100874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101799" g_stop="101313" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101174" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="523" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E245244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101799" e_stop="101313"/>
          <exon e_start="101209" e_stop="101174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAG</genome_strand>
        <mrna_strand>TGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255107" ref_strand="+" ref_description="SGN-E255107 [cLEG-31-F2]">
      <seq>aaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaantgttanttttttgaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccgcgaatgggtccaacttttggagctatgatgatatcaggacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102023" stop="100874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101723" g_stop="101313" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101174" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="453" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E255107" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101723" e_stop="101313"/>
          <exon e_start="101209" e_stop="101174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAA-TGTTA-----TGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCAGGACAG</genome_strand>
        <mrna_strand>AAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAANTGTTANTTTTTTGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCGCGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCAGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282548" ref_strand="+" ref_description="SGN-E282548 [cLER-18-J21]">
      <seq>tcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102007" stop="100880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101707" g_stop="101313" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101180" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="425" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E282548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101707" e_stop="101313"/>
          <exon e_start="101209" e_stop="101180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATATCA</genome_strand>
        <mrna_strand>TCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270294" ref_strand="+" ref_description="SGN-E270294 [cLEM-1-H19]">
      <seq>ttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102175" stop="100882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101878" g_stop="101313" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101182" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="594" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E270294" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101878" e_stop="101313"/>
          <exon e_start="101209" e_stop="101182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATAT</genome_strand>
        <mrna_strand>TTCAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262304" ref_strand="+" ref_description="SGN-E262304 [cLEG-56-H9]">
      <seq>gatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102836" stop="100883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102536" g_stop="102363" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101313" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="735" r_length="561" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101209" g_stop="101183" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="762" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E262304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102536" e_stop="102363"/>
          <exon e_start="101873" e_stop="101313"/>
          <exon e_start="101209" e_stop="101183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGATA</genome_strand>
        <mrna_strand>GATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268309" ref_strand="+" ref_description="SGN-E268309 [cLEM-3-O10]">
      <seq>tgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102696" stop="100885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102396" g_stop="102363" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101313" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="595" r_length="561" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101209" g_stop="101185" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="620" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102396" e_stop="102363"/>
          <exon e_start="101873" e_stop="101313"/>
          <exon e_start="101209" e_stop="101185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGA</genome_strand>
        <mrna_strand>TGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269692" ref_strand="+" ref_description="SGN-E269692 [cLEM-17-C16]">
      <seq>ctacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaagagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102036" stop="100885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101736" g_stop="101313" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101185" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="449" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269692" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101736" e_stop="101313"/>
          <exon e_start="101209" e_stop="101185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATGA</genome_strand>
        <mrna_strand>CTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAAGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462871" ref_strand="+" ref_description="SGN-E462871 [cPRO-12-P12]">
      <seq>gaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccatgacacacaatcctgcatggaccccaatgttatggaggctaaggttgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggcttaggagcattggcatgattaacagtgttcctggaatgaaagctttggacatgaacgctgctgaggacgcaattgttagacttaccagaagagttgtacctggaatgattgttacanngaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagctatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102774" stop="100886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102474" g_stop="102363" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101313" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="674" r_length="562" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101209" g_stop="101186" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="698" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E462871" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102474" e_stop="102363"/>
          <exon e_start="101873" e_stop="101313"/>
          <exon e_start="101209" e_stop="101186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACA-GGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGCTATGATG</genome_strand>
        <mrna_strand>GAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCATGACACACAATCCTGCATGGACCCCAATGTTATGGAGGCTAAGGTTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTTAGGAGCATTGGCATGATTAACAGTGTTCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCAATTGTTAGACTTACCAGAAGAGTTGTACCTGGAATGATTGTTACANNGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGCTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272285" ref_strand="+" ref_description="SGN-E272285 [cLEM-19-J13]">
      <seq>tggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatctgggcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagataggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggagcaccacgaatgggtccaacttttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102131" stop="101010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101831" g_stop="101313" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101193" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="536" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272285" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101831" e_stop="101313"/>
          <exon e_start="101209" e_stop="101193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAGC</genome_strand>
        <mrna_strand>TGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTGGGCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGATAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG.......................................................................................................GGTCCAACTTTTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707624" ref_strand="+" ref_description="SGN-E707624 [FA33CB04]">
      <seq>cccgtaaagagcacatcttttcttgaacgagctaggcattgacctttacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaaaaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttgccatagaggtcgtacctggtataagtgtcacaggaatggaagatgctgaaggtgatggagcacgactaatgggtccaacttttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102087" stop="100894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101797" g_stop="101313" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101209" g_stop="101194" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="500" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E707624" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101797" e_stop="101313"/>
          <exon e_start="101209" e_stop="101194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATGGTTAGTATGAAATACTTGAACTCCTATATTGTATAAACTCATAATTAGAAGTTAGAAAAGCAACAAACAATTCAACTAATTGGAGATGTTATACATTGTACAGGGTCCAACTTTTGGAG</genome_strand>
        <mrna_strand>CCCGTAA-AGAGCACATCTTTTCTTGAACGAGCTAGGCATTGACCTTTACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAAAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTGCCATAGAGGTCGTACCTGGTATAAGTGTCACAGGAATGGAAGATGCTGAAGGTGATGGAGCACGACTAATG.......................................................................................................GGTCCAACTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284203" ref_strand="+" ref_description="SGN-E284203 [cLER-16-A4]">
      <seq>gtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcangagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102152" stop="101024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101852" g_stop="101324" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E284203" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101852" e_stop="101324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAG</genome_strand>
        <mrna_strand>GTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCANGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258477" ref_strand="+" ref_description="SGN-E258477 [cLEG-47-F16]">
      <seq>gcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcangagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaagacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacacgaatggaagttgctgaaattgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102695" stop="101025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102395" g_stop="102363" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101325" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="582" r_length="549" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E258477" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102395" e_stop="102363"/>
          <exon e_start="101873" e_stop="101325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGA</genome_strand>
        <mrna_strand>GCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCANGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAAGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACACGAATGGAAGTTGCTGAAATTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264635" ref_strand="+" ref_description="SGN-E264635 [cLEG-72-K6]">
      <seq>ccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaagagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacangaatggaagttgctgaaattgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102013" stop="101025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101713" g_stop="101325" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E264635" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101713" e_stop="101325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGA</genome_strand>
        <mrna_strand>CCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAAGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACANGAATGGAAGTTGCTGAAATTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272616" ref_strand="+" ref_description="SGN-E272616 [cLEM-21-N5]">
      <seq>tgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102738" stop="101028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102438" g_stop="102363" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101328" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="622" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102438" e_stop="102363"/>
          <exon e_start="101873" e_stop="101328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGAT</genome_strand>
        <mrna_strand>TGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730106" ref_strand="+" ref_description="SGN-E730106 [LA23AC12]">
      <seq>cttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatgggcgccaccggtgttaagaggctcangagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcgattgttagacttaccagagaggtcgtacctggtatgattgtcacaggaatggaagttgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103045" stop="101034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102745" g_stop="102363" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101553" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="704" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101552" i_stop="101493" i_length="60">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101492" g_stop="101334" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="863" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E730106" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102745" e_stop="102363"/>
          <exon e_start="101873" e_stop="101553"/>
          <exon e_start="101492" e_stop="101334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAA</genome_strand>
        <mrna_strand>CTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGC............................................................ATGGGCGCCACCGGTGTTAAGAGGCTCANGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254441" ref_strand="+" ref_description="SGN-E254441 [cLEG-27-B2]">
      <seq>ctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaggacgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102169" stop="101097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101869" g_stop="101397" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254441" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101869" e_stop="101397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCG</genome_strand>
        <mrna_strand>CTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701046" ref_strand="+" ref_description="SGN-E701046 [FA14DE09]">
      <seq>caatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103049" stop="101101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102749" g_stop="102363" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101401" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="860" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E701046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102749" e_stop="102363"/>
          <exon e_start="101873" e_stop="101401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGA</genome_strand>
        <mrna_strand>CAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735896" ref_strand="+" ref_description="SGN-E735896 [LC03CC10]">
      <seq>tccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102974" stop="101104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102674" g_stop="102363" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101402" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="784" r_length="472" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E735896" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102674" e_stop="102363"/>
          <exon e_start="101873" e_stop="101402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGG</genome_strand>
        <mrna_strand>TCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371321" ref_strand="+" ref_description="SGN-E371321 [TUS-27-O21]">
      <seq>tttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcangagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102818" stop="101103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102518" g_stop="102363" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101403" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="627" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E371321" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102518" e_stop="102363"/>
          <exon e_start="101873" e_stop="101403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAG</genome_strand>
        <mrna_strand>TTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCANGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723375" ref_strand="+" ref_description="SGN-E723375 [FC20BC01]">
      <seq>gacactcaaaactcaaaccataatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103068" stop="101104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102769" g_stop="102363" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101404" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="877" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E723375" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102769" e_stop="102363"/>
          <exon e_start="101873" e_stop="101404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGA</genome_strand>
        <mrna_strand>GACACTCAAAACTCAAACCATAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736901" ref_strand="+" ref_description="SGN-E736901 [LC07CH11]">
      <seq>cttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103045" stop="101104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102745" g_stop="102363" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101404" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="853" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E736901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102745" e_stop="102363"/>
          <exon e_start="101873" e_stop="101404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGA</genome_strand>
        <mrna_strand>CTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730658" ref_strand="+" ref_description="SGN-E730658 [LA24DB08]">
      <seq>ccatacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcangagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103056" stop="101105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102756" g_stop="102363" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101405" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="863" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E730658" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102756" e_stop="102363"/>
          <exon e_start="101873" e_stop="101405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTG</genome_strand>
        <mrna_strand>CCATACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCANGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737385" ref_strand="+" ref_description="SGN-E737385 [LC09CD10]">
      <seq>cataacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103056" stop="101105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102756" g_stop="102363" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101405" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="863" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E737385" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102756" e_stop="102363"/>
          <exon e_start="101873" e_stop="101405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTG</genome_strand>
        <mrna_strand>CATAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701899" ref_strand="+" ref_description="SGN-E701899 [FA17BA08]">
      <seq>acacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcangagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103052" stop="101105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102752" g_stop="102363" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101405" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="859" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E701899" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102752" e_stop="102363"/>
          <exon e_start="101873" e_stop="101405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTG</genome_strand>
        <mrna_strand>ACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCANGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705622" ref_strand="+" ref_description="SGN-E705622 [FA27CG03]">
      <seq>gttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102980" stop="101105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102680" g_stop="102363" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101405" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="787" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E705622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102680" e_stop="102363"/>
          <exon e_start="101873" e_stop="101405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTG</genome_strand>
        <mrna_strand>GTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736758" ref_strand="+" ref_description="SGN-E736758 [LC07AC10]">
      <seq>cttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcangagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103045" stop="101106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102745" g_stop="102363" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101406" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="851" r_length="468" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E736758" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102745" e_stop="102363"/>
          <exon e_start="101873" e_stop="101406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCT</genome_strand>
        <mrna_strand>CTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCANGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271806" ref_strand="+" ref_description="SGN-E271806 [cLEM-8-C16]">
      <seq>tgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaagtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaagagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaacgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102744" stop="101107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102444" g_stop="102363" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101407" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="549" r_length="467" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271806" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102444" e_stop="102363"/>
          <exon e_start="101873" e_stop="101407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGC</genome_strand>
        <mrna_strand>TGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAAGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250974" ref_strand="+" ref_description="SGN-E250974 [cLEG-13-P7]">
      <seq>gtgagccctgttggaggtgcttggctaggcggacaactgtgctatgctatggttgtgcgtaagccaccacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtgggcatcaaacacgctgtcttgttcaccttaaccatcatgagcaagcttttggccaggccaaatgtgaagcttttcaatgctgttgcaacagaagaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaagagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102152" stop="101112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101852" g_stop="101412" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E250974" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101852" e_stop="101412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAAC</genome_strand>
        <mrna_strand>GTGAGCCCTGTTGGAGGTGCTTGGCTAGGCGGACAACTGTGCTATGCTATGGTTGTGCGTAAGCCACCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGGCATCAAACACGCTGTCTTGTTCACCTTAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTTTTCAATGCTGTTGCAACAGAAGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAAGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705404" ref_strand="+" ref_description="SGN-E705404 [FA27AC01]">
      <seq>gttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaacccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatgaaagctttggacatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102980" stop="101113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102680" g_stop="102363" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101413" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="780" r_length="462" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E705404" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102680" e_stop="102363"/>
          <exon e_start="101873" e_stop="101413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAA-CCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAA</genome_strand>
        <mrna_strand>GTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282869" ref_strand="+" ref_description="SGN-E282869 [cLER-15-L1]">
      <seq>cctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacagccccatgggcgccaccggtgttaagaggctcatgagcattggcatgatcaacagtgtccctggaatgaaagctttggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102184" stop="101115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101873" g_stop="101415" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="471" r_length="459" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E282869" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101873" e_stop="101415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATG</genome_strand>
        <mrna_strand>GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACAGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCATGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717599" ref_strand="+" ref_description="SGN-E717599 [FC02AG10]">
      <seq>gggcgattggcggccaatcggccgaattgactcaaaactcaaaacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaacagtgtccctggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103066" stop="101130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102766" g_stop="102363" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="433" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101430" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="877" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E717599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102766" e_stop="102363"/>
          <exon e_start="101873" e_stop="101430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATG</genome_strand>
        <mrna_strand>ACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703601" ref_strand="+" ref_description="SGN-E703601 [FA21DG12]">
      <seq>cacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccacccggtgttaagaggctcangagcattggcatgatcaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103051" stop="101143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102751" g_stop="102363" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101443" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="821" r_length="432" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E703601" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102751" e_stop="102363"/>
          <exon e_start="101873" e_stop="101443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCA-CCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAG</genome_strand>
        <mrna_strand>CACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCCGGTGTTAAGAGGCTCANGAGCATTGGCATGATCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706116" ref_strand="+" ref_description="SGN-E706116 [FA29AC02]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgttaagaggctcaggagcattggcatgatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101445" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="817" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E706116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAAC</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708970" ref_strand="+" ref_description="SGN-E708970 [FA42BB07]">
      <seq>cgctatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggacccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccggtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103051" stop="101174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102751" g_stop="102363" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101474" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="790" r_length="401" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E708970" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102751" e_stop="102363"/>
          <exon e_start="101873" e_stop="101474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGA-CCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTA</genome_strand>
        <mrna_strand>CGCTATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725286" ref_strand="+" ref_description="SGN-E725286 [FC26CF01]">
      <seq>gggcgattggcggcaaatcggccgaattgacactcaaaactcacaatacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcgccaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103068" stop="101179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102766" g_stop="102363" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="435" r_length="404" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101479" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="830" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E725286" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102766" e_stop="102363"/>
          <exon e_start="101873" e_stop="101479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGG</genome_strand>
        <mrna_strand>ACTCAAAACTCACAATACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724756" ref_strand="+" ref_description="SGN-E724756 [FC25AC11]">
      <seq>aatcggccgaattgacactcaaaactccaattaaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggccccatgggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103068" stop="101186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102766" g_stop="102363" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="419" r_length="403" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101486" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="807" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E724756" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102766" e_stop="102363"/>
          <exon e_start="101873" e_stop="101486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCG</genome_strand>
        <mrna_strand>ACTCAAAACTCCAATTA-AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260539" ref_strand="+" ref_description="SGN-E260539 [cLEG-54-M22]">
      <seq>tccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagaagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacggcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103041" stop="101192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102741" g_stop="102363" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101492" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="762" r_length="383" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E260539" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102741" e_stop="102363"/>
          <exon e_start="101873" e_stop="101492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAG-AGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCA</genome_strand>
        <mrna_strand>TCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699722" ref_strand="+" ref_description="SGN-E699722 [FA11AB04]">
      <seq>cacattacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggccacgacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103056" stop="101197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102756" g_stop="102363" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101497" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="771" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E699722" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102756" e_stop="102363"/>
          <exon e_start="101873" e_stop="101497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGG</genome_strand>
        <mrna_strand>CACATTACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554006" ref_strand="+" ref_description="SGN-E554006 [cTSC-2-O24]">
      <seq>caaaacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103056" stop="101205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102756" g_stop="102363" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101505" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="763" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E554006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102756" e_stop="102363"/>
          <exon e_start="101873" e_stop="101505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGC</genome_strand>
        <mrna_strand>CAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706110" ref_strand="+" ref_description="SGN-E706110 [FA29AB08]">
      <seq>cgcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103001" stop="101206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102702" g_stop="102363" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101506" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="708" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E706110" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102702" e_stop="102363"/>
          <exon e_start="101873" e_stop="101506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGG</genome_strand>
        <mrna_strand>CGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264028" ref_strand="+" ref_description="SGN-E264028 [cLEG-64-J20]">
      <seq>gctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102791" stop="101208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102491" g_stop="102363" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101508" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="495" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E264028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102491" e_stop="102363"/>
          <exon e_start="101873" e_stop="101508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGT</genome_strand>
        <mrna_strand>GCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731078" ref_strand="+" ref_description="SGN-E731078 [LA26AC10]">
      <seq>aattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatgcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggaggctaagattgtggtcagctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103019" stop="101210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102719" g_stop="102363" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101510" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="720" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E731078" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102719" e_stop="102363"/>
          <exon e_start="101873" e_stop="101510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTT</genome_strand>
        <mrna_strand>AATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTAT-GCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568789" ref_strand="+" ref_description="SGN-E568789 [13127]">
      <seq>atttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaattgttaaatcgactccacaaaacatagctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccatgacacacaatcctgcatgggaccccaatgttatggaggctaaggttgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102964" stop="101218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102664" g_stop="102363" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101518" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="662" r_length="357" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E568789" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102664" e_stop="102363"/>
          <exon e_start="101873" e_stop="101518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCAT-GGACCCTAATGTTATGGAGGCTAAGATTGTGGT</genome_strand>
        <mrna_strand>ATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATTGTTAAATCGACTCCACAAAACATAGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCATGACACACAATCCTGCATGGGACCCCAATGTTATGGAGGCTAAGGTTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723330" ref_strand="+" ref_description="SGN-E723330 [FC20AF12]">
      <seq>gacactcaaaactcatccatataaggtctccgnnntaaatcccagttctcaattcttccccttaaaagacttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccaaaaccacgacacacaatcctgcatggaccctaatgttatggaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103034" stop="101229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102769" g_stop="102363" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101529" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="752" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E723330" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102769" e_stop="102363"/>
          <exon e_start="101873" e_stop="101529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCT</genome_strand>
        <mrna_strand>GACACTCAAAACTCATCCATATAAGGTCTCCGNNNTAAATCCCAGTTCTCAATTCTTCCCCTTAAAAGACTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAAAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724501" ref_strand="+" ref_description="SGN-E724501 [FC24BB10]">
      <seq>tcaaaactcacaacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaaaaacggaaaagtcggtggtgttgtcactaactggtctttggtttcccaaaaccacaacacacaatcctgcatggaccctaatgttatggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103064" stop="101231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102764" g_stop="102363" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101531" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="745" r_length="343" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E724501" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102764" e_stop="102363"/>
          <exon e_start="101873" e_stop="101531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGG</genome_strand>
        <mrna_strand>TCAAAACTCACAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAAAACGGAAAAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAAAACCACAACACACAATCCTGCATGGACCCTAATGTTATGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396300" ref_strand="+" ref_description="SGN-E396300 [TUS-47-K9]">
      <seq>cttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102988" stop="101231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102688" g_stop="102363" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101531" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="669" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E396300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102688" e_stop="102363"/>
          <exon e_start="101873" e_stop="101531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGG</genome_strand>
        <mrna_strand>CTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347958" ref_strand="+" ref_description="SGN-E347958 [cTOF-31-N21]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtgggtgttgtcactaactggtnctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101534" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="730" r_length="342" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E347958" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGT-GGTGTTGTCACTAACTGGT-CTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGG</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGGTGTTGTCACTAACTGGTNCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335049" ref_strand="+" ref_description="SGN-E335049 [cTOE-9-F15]">
      <seq>aatcttctccgcccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggtgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactaccgtggtcatcaaacacgctgnccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggacctttatcgtgaaaacggaagagtccgttgggtgttgtcactaaccctggtctttggtttcccagaaccacgacacacaatcctgcatggacccctaatgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103048" stop="101235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102748" g_stop="102363" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101535" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="732" r_length="345" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E335049" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102748" e_stop="102363"/>
          <exon e_start="101873" e_stop="101535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTCCG-CCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTA-CGTGGTCATCAAACACGCTG-CCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACC-TTATCGTGAAGAACGGAAGAGTC-GGT-GGTGTTGTCACTAA--CTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGA-CCCTAATGTTATG</genome_strand>
        <mrna_strand>AATCTTCTCCGCCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGG-TGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACCGTGGTCATCAAACACGCTGNCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTTATCGTGAA-AACGGAAGAGTCCGTTGGGTGTTGTCACTAACCCTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCCTAATGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326560" ref_strand="+" ref_description="SGN-E326560 [cTOC-17-P13]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaacttgggtcttggtttcccagaaccacgacacacaatcctgcattggacctaatgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101535" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="722" r_length="340" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E326560" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAAC-TGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATG</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTTGGGTCTTGGTTTCCCAGAACCACGACACACAATCCTGCATTGGACCTAATGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478185" ref_strand="+" ref_description="SGN-E478185 [cSTD-3-F7]">
      <seq>aatctcaattcttctctatcaatggcttccaccttggcctcctctgttatttcaaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaatcgttaaatccactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctccttacgaatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttgtcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaaggaagagtcgggcggtgttgtcactaactggtctttggtttcccagaaccatgacacacaatcctgcatggaccccaatgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="101235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102725" g_stop="102363" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101535" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="706" r_length="339" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E478185" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102725" e_stop="102363"/>
          <exon e_start="101873" e_stop="101535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACG-ATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTC-GGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATG</genome_strand>
        <mrna_strand>AATCTCAATTCTTCTCTATCAATGGCTTCCACCTTGGCCTCCTCTGTTATTTCAAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCCACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGAATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTGTCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAA-GGAAGAGTCGGGCGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCATGACACACAATCCTGCATGGACCCCAATGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272247" ref_strand="+" ref_description="SGN-E272247 [cLEM-19-I14]">
      <seq>gctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102746" stop="101235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102446" g_stop="102363" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101535" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="423" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102446" e_stop="102363"/>
          <exon e_start="101873" e_stop="101535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATG</genome_strand>
        <mrna_strand>GCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340261" ref_strand="+" ref_description="SGN-E340261 [cTOF-2-H18]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactancgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaaggnaagagtcggtgggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggacccctaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101536" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="729" r_length="341" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E340261" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTA-CGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGT-GGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGA-CCCTAATGTTAT</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTANCGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAAGGNAAGAGTCGGTGGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCCTAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480124" ref_strand="+" ref_description="SGN-E480124 [cSTD-12-D12]">
      <seq>tcttctccgccctaaattccaaaaatctcaattcttctctatcaatggcttccacccttggcttcctctgttatttcaaagaataatttcattgacaccacacaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaatcgttaaatccaccttccaccaaaacatggctgtttccattgtctgctgatgccttctcctcctccttaacgatctcggaagtttcagttttaatccgattaagggaatcgattgttgctcgcgaaatgacacggaggtatatgacggatatgaatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttgtcttgtgcttatgaactcagcaagaaccctgatgttcangtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaaaacggnagagtcnngcggntgttgtcactaactggtcttttggtttcccagaaccatgacacacaatcctgcatggaccccaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101536" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="739" r_length="340" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E480124" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAAT-CC-CAGTTCTCAATTCTTCTCCATCAATGGCTTCCA-CCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACA-CACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGA-C-TCCA-CAAAACATGTCTGTTTCCA-TGTCTGCTGATG-C-T-T-CTCCTCCTT-ACGATCTCGGAAGTTTCAGTTTTAATCCGATTAA-GGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATG-ATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTC-GGTGG-TGTTGTCACTAACTGGTC-TTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTAT</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATTCCAAAAATCTCAATTCTTCTCTATCAATGGCTTCCACCCTTGGCTTCCTCTGTTATTTCAAAGAATAATTTCATTGACACCACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCCACCTTCCACCAAAACATGGCTGTTTCCATTGTCTGCTGATGCCTTCTCCTCCTCCTTAACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGGAATCGATTGTTGCTCGCGAAATGACACGGAGGTATATGACGGATATGAATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTGTCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAN.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAA-AACGGNAGAGTCNNGCGGNTGTTGTCACTAACTGGTCTTTTGGTTTCCCAGAACCATGACACACAATCCTGCATGGACCCCAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291792" ref_strand="+" ref_description="SGN-E291792 [cLET-7-I3]">
      <seq>gatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggttgtaatttccnttttttttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttcaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102854" stop="101236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102554" g_stop="102363" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.50"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101536" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="542" r_length="338" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E291792" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102554" e_stop="102363"/>
          <exon e_start="101873" e_stop="101536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTT-T-A--T-C-------TTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTAT</genome_strand>
        <mrna_strand>GATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTGTAATTTCCNTTTTTTTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTCAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271321" ref_strand="+" ref_description="SGN-E271321 [cLEM-5-N10]">
      <seq>tttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102818" stop="101236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102518" g_stop="102363" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101536" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="494" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102518" e_stop="102363"/>
          <exon e_start="101873" e_stop="101536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTAT</genome_strand>
        <mrna_strand>TTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290259" ref_strand="+" ref_description="SGN-E290259 [cLET-5-J9]">
      <seq>tttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102818" stop="101236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102518" g_stop="102363" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101536" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="494" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E290259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102518" e_stop="102363"/>
          <exon e_start="101873" e_stop="101536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTAT</genome_strand>
        <mrna_strand>TTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254763" ref_strand="+" ref_description="SGN-E254763 [cLEG-33-K1]">
      <seq>gaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaagcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatggaccctaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102785" stop="101236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102485" g_stop="102363" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101536" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="461" r_length="338" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254763" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102485" e_stop="102363"/>
          <exon e_start="101873" e_stop="101536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTAT</genome_strand>
        <mrna_strand>GAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAAGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480592" ref_strand="+" ref_description="SGN-E480592 [cSTD-14-D5]">
      <seq>ttgaaaatcgttaaatccactccacaaaacatggctgtttccctgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgacacggaggtatatgaacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttgtcttgtgcttatgaactcaacaagaaccctgatgttcaagtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactactacgagcaagaccactacgntgtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaagaccttatcgtgaagaacggaagagtcngcggtgttgtcactaactggtcttttgtttcccagaccatgacacacaatcctgcatggaccccaatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102874" stop="101237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102605" g_stop="102363" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101537" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="583" r_length="336" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E480592" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102605" e_stop="102363"/>
          <exon e_start="101873" e_stop="101537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATG-ACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTA</genome_strand>
        <mrna_strand>TTGAAAATCGTTAAATCCACTCCACAAAACATGGCTGTTTCCCTGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACACGGAGGTATATGAACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTGTCTTGTGCTTATGAACTCAACAAGAACCCTGATGTTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACTACGAGCAAGACCACTACGNTGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAAGACCTTATCGTGAAGAACGGAAGAGTCNGCGGTGTTGTCACTAACTGGTCTTTTGTTTCCCAG-ACCATGACACACAATCCTGCATGGACCCCAATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326722" ref_strand="+" ref_description="SGN-E326722 [cTOC-17-P14]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccacgacacacaatcctgcatgggacctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101540" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="716" r_length="334" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E326722" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATG</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGGACCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332298" ref_strand="+" ref_description="SGN-E332298 [cTOD-17-F23]">
      <seq>aaacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaacacgacacacaatcctgcatggaccctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103054" stop="101241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102754" g_stop="102363" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101541" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="724" r_length="332" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E332298" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102754" e_stop="102363"/>
          <exon e_start="101873" e_stop="101541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAAT</genome_strand>
        <mrna_strand>AAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAA-CACGACACACAATCCTGCATGGACCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328691" ref_strand="+" ref_description="SGN-E328691 [cTOC-23-A14]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggagagtcggtggtgttgtcactaactgggtctttggtttcccagaaacacgacacacaatcctgcatggaccctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101541" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="715" r_length="333" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E328691" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACT-GGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAAT</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGG-AGAGTCGGTGGTGTTGTCACTAACTGGGTCTTTGGTTTCCCAGAAACACGACACACAATCCTGCATGGACCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479339" ref_strand="+" ref_description="SGN-E479339 [cSTD-9-D15]">
      <seq>cgattctccgccctaaatcccaaaaatctcaattcttctctatcaatggcttccaccttggcttcctctgttatttccaagaactaaattcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaatcgttaaatccactccacaaaacatagctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactancgtggtcatcaaacacgctgnccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggacctttatcgtgaaaacgnaagatcngntnggtgttgtcactaactggtcttttggtttcccagaaccatgacacacaatcctgcatggcccccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="101242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="102363" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101542" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="727" r_length="336" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E479339" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="102363"/>
          <exon e_start="101873" e_stop="101542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTCCGCCCTAAATCCC--AGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAG-ACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTA-CGTGGTCATCAAACACGCTG-CCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACC-TTATCGTGAAGAACGGAAGAGTCGGT-GGTGTTGTCACTAACTGGTC-TTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAA</genome_strand>
        <mrna_strand>CGATTCTCCGCCCTAAATCCCAAAAATCTCAATTCTTCTCTATCAATGGCTTCCACCTTGGCTTCCTCTGTTATTTCCAAGAACTAAATTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCCACTCCACAAAACATAGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTANCGTGGTCATCAAACACGCTGNCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTTATCGTGAA-AACGNAAGATCNGNTNGGTGTTGTCACTAACTGGTCTTTTGGTTTCCCAGAACCATGACACACAATCCTGCATGGCCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328728" ref_strand="+" ref_description="SGN-E328728 [cTOC-23-B13]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtccggtggtgttgtcactaactgggtcttgggttcccagaaacacgacacacaatcctgcatgggaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101543" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="714" r_length="332" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E328728" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGT-CGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTA</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCCGGTGGTGTTGTCACTAACTGGGTCTTGGGTTCCCAGAAACACGACACACAATCCTGCATGGGACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400876" ref_strand="+" ref_description="SGN-E400876 [PPC-2-K20]">
      <seq>ctatcaatggcttccaccttggcttcctctgttatttcaaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagcccgattgaaaatcgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatccgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaaccatgacacacaatcctgcatggacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103010" stop="101242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102710" g_stop="102363" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101543" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="682" r_length="331" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E400876" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102710" e_stop="102363"/>
          <exon e_start="101873" e_stop="101543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTA</genome_strand>
        <mrna_strand>CTATCAATGGCTTCCACCTTGGCTTCCTCTGTTATTTCAAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCCCGATTGAAAATCGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCCGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCATGACACACAATCCTGCATGGACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326727" ref_strand="+" ref_description="SGN-E326727 [cTOC-25-A19]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagacggaagagtcggtggtgttgtcactaactggtctttggtttcccagaacacgacacacaatcctgcatggaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101545" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="709" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E326727" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCC</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAG-ACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAA-CACGACACACAATCCTGCATGGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478870" ref_strand="+" ref_description="SGN-E478870 [cSTD-7-M22]">
      <seq>cttctccgccctaaatcccaaaaatctcaattcttctctataatggcttccaccttggcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaatcgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaaaacggaagagtcggtgggtgttgtcactaactggtctttggtttcccagaaccatgacacacaatcatgcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103045" stop="101248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102745" g_stop="102363" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101548" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="719" r_length="326" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E478870" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102745" e_stop="102363"/>
          <exon e_start="101873" e_stop="101548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCGCCCTAAATCCC--AGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATG------CT--T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGT-GGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGA</genome_strand>
        <mrna_strand>CTTCTCCGCCCTAAATCCCAAAAATCTCAATTCTTCTCTAT-AATGGCTTCCACCTTGGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAA-AACGGAAGAGTCGGTGGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCATGACACACAATCATGCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731140" ref_strand="+" ref_description="SGN-E731140 [LA26BA10]">
      <seq>aattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatgcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtcttttggtttcccagaaccacgacacacaatccctgcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103019" stop="101249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102719" g_stop="102363" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101549" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="683" r_length="327" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E731140" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102719" e_stop="102363"/>
          <exon e_start="101873" e_stop="101549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTC-TTTGGTTTCCCAGAACCACGACACACAAT-CCTGCATGG</genome_strand>
        <mrna_strand>AATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTAT-GCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTTGGTTTCCCAGAACCACGACACACAATCCCTGCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343136" ref_strand="+" ref_description="SGN-E343136 [cTOF-17-I20]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaagggaagagtcgggtgggtgttgtcactaactggtcctttggtttcccagaaccacgacacacaatcctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101551" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="714" r_length="326" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E343136" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTC-GGT-GGTGTTGTCACTAACTGGT-CTTTGGTTTCCCAGAACCACGACACACAATCCTGCAT</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAAGGGAAGAGTCGGGTGGGTGTTGTCACTAACTGGTCCTTTGGTTTCCCAGAACCACGACACACAATCCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465536" ref_strand="+" ref_description="SGN-E465536 [cPRO-21-M6]">
      <seq>cttctccgccctaaatcccaaaaatctcaattcttctctataatggcttccaccttggcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaatcgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagaagtcngtggtgttgtcactaactgggtctttgggtttcccagaccatgacacacaatcatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103045" stop="101251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102745" g_stop="102363" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101551" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="718" r_length="325" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E465536" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102745" e_stop="102363"/>
          <exon e_start="101873" e_stop="101551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCGCCCTAAATCCC--AGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATG------CT--T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAG-AGTCGGTGGTGTTGTCACTAACT-GGTCTTT-GGTTTCCCAGAACCACGACACACAATCCTGCAT</genome_strand>
        <mrna_strand>CTTCTCCGCCCTAAATCCCAAAAATCTCAATTCTTCTCTAT-AATGGCTTCCACCTTGGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAAGTCNGTGGTGTTGTCACTAACTGGGTCTTTGGGTTTCCCAG-ACCATGACACACAATCATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347654" ref_strand="+" ref_description="SGN-E347654 [cTOF-26-F14]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaagaccttatcgtgaagaacgaagagtcggtggtgttgtcactaactggtctttggtttcccagaacccgacacacaatcctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101552" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="708" r_length="320" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E347654" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCA</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAAGACCTTATCGTGAAGAAC-GAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACC-CGACACACAATCCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486616" ref_strand="+" ref_description="SGN-E486616 [cSTE-22-P13]">
      <seq>ccgccctaaatcccaaaaatctcaattcttctctataatggcttccaccttggcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaattgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaaactcttcaatgctgttgcaacagaagaccttatcgtgaagaacggaagaagtggtggtgttgttactaactggtctttggttcccagaaccatgacacacaatcctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="101252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102740" g_stop="102363" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101552" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="709" r_length="321" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E486616" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102740" e_stop="102363"/>
          <exon e_start="101873" e_stop="101552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCCTAAATCCC--AGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATG------CT--T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCA</genome_strand>
        <mrna_strand>CCGCCCTAAATCCCAAAAATCTCAATTCTTCTCTAT-AATGGCTTCCACCTTGGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATTGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAACTCTTCAATGCTGTTGCAACAGAAGACCTTATCGTGAAGAACGGAAGAAGTGGTGGTGTTGTTACTAACTGGTCTTTGG-TTCCCAGAACCATGACACACAATCCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729406" ref_strand="+" ref_description="SGN-E729406 [LA20DH04]">
      <seq>cacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccaccacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacataggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttcccacaaccacgacacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103051" stop="101259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102751" g_stop="102363" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101559" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="704" r_length="315" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E729406" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102751" e_stop="102363"/>
          <exon e_start="101873" e_stop="101559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAA</genome_strand>
        <mrna_strand>CACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCACCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACATAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCACAACCACGACACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721372" ref_strand="+" ref_description="SGN-E721372 [FC13CG04]">
      <seq>ttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacaaaggaccttatcgtgaagaacggaagagtcggtggtgttgtcactaactggtctttggtttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103014" stop="101276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102714" g_stop="102363" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101576" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="650" r_length="298" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E721372" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102714" e_stop="102363"/>
          <exon e_start="101873" e_stop="101576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCC</genome_strand>
        <mrna_strand>TTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAAAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698645" ref_strand="+" ref_description="SGN-E698645 [FA07AF03]">
      <seq>ccccataatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaaaaacggaagagtcggtggtgttgtcactaactggtctttggtttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103051" stop="101277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102754" g_stop="102363" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101577" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="689" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E698645" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102754" e_stop="102363"/>
          <exon e_start="101873" e_stop="101577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCC</genome_strand>
        <mrna_strand>CCCCATAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAAAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268231" ref_strand="+" ref_description="SGN-E268231 [cLEM-3-C4]">
      <seq>acaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102949" stop="101307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102649" g_stop="102363" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101607" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="554" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102649" e_stop="102363"/>
          <exon e_start="101873" e_stop="101607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGT</genome_strand>
        <mrna_strand>ACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729348" ref_strand="+" ref_description="SGN-E729348 [LA20DB07]">
      <seq>ctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaacccttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacggaagagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103042" stop="101309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102742" g_stop="102369" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102368" i_stop="101831" i_length="538">
            <donor d_prob="0.906" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101830" g_stop="101609" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="594" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E729348" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102742" e_stop="102369"/>
          <exon e_start="101830" e_stop="101609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCG</genome_strand>
        <mrna_strand>CTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCT--T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264610" ref_strand="+" ref_description="SGN-E264610 [cLEG-72-E17]">
      <seq>gctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtgaagaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102791" stop="101318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102491" g_stop="102363" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101618" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="385" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E264610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102491" e_stop="102363"/>
          <exon e_start="101873" e_stop="101618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACG</genome_strand>
        <mrna_strand>GCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347773" ref_strand="+" ref_description="SGN-E347773 [cTOF-26-D15]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaacagaggaccttatcgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101624" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="638" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E347773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGA</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317421" ref_strand="+" ref_description="SGN-E317421 [cTOA-28-H5]">
      <seq>ccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctangcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggcccagccaaatgtgaagctctttcatgctgttgcaacagaggaccttatcgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103028" stop="101324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102728" g_stop="102363" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101624" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="616" r_length="250" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E317421" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102728" e_stop="102363"/>
          <exon e_start="101873" e_stop="101624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGA</genome_strand>
        <mrna_strand>CCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTANGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCCAGCCAAATGTGAAGCTCTTTCATGCTGTTGCAACAGAGGACCTTATCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270992" ref_strand="+" ref_description="SGN-E270992 [cLEM-22-M21]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101641" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="621" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E270992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAAC</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273532" ref_strand="+" ref_description="SGN-E273532 [cLEN-6-M11]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101641" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="617" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E273532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAAC</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271870" ref_strand="+" ref_description="SGN-E271870 [cLEM-8-P13]">
      <seq>atttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102923" stop="101341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102623" g_stop="102363" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101641" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="494" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102623" e_stop="102363"/>
          <exon e_start="101873" e_stop="101641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAAC</genome_strand>
        <mrna_strand>ATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723319" ref_strand="+" ref_description="SGN-E723319 [FC20AE12]">
      <seq>ttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgaaccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacaagctaggcattgactacaacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggcctggccaaatgtgaagctcttcaatgctgttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102999" stop="101342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102699" g_stop="102363" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101642" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="569" r_length="232" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E723319" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102699" e_stop="102363"/>
          <exon e_start="101873" e_stop="101642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAA</genome_strand>
        <mrna_strand>TTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAACCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACAAGCTAGGCATTGACTACAACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCTGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467527" ref_strand="+" ref_description="SGN-E467527 [cSTB-49-A20]">
      <seq>cgaggcttctccgccctaaatcccaaaaatctcaattcttctctatcaatggcttccaccttggcttcctctgttatttcaaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagcccgattgaaaatcgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgctattgttggtgctggatccgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggcggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103045" stop="101344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101644" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="623" r_length="230" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E467527" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCC--AGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGC</genome_strand>
        <mrna_strand>CGAGGCTTCTCCGCCCTAAATCCCAAAAATCTCAATTCTTCTCTATCAATGGCTTCCACCTTGGCTTCCTCTGTTATTTCAAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCCCGATTGAAAATCGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGCTATTGTTGGTGCTGGATCCGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGCGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272727" ref_strand="+" ref_description="SGN-E272727 [cLEM-21-O16]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101644" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="612" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGC</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272341" ref_strand="+" ref_description="SGN-E272341 [cLEM-19-P2]">
      <seq>tttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102976" stop="101344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102676" g_stop="102363" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101644" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="544" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102676" e_stop="102363"/>
          <exon e_start="101873" e_stop="101644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGC</genome_strand>
        <mrna_strand>TTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268890" ref_strand="+" ref_description="SGN-E268890 [cLEM-4-H23]">
      <seq>tcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102890" stop="101344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102590" g_stop="102363" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101644" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="458" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268890" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102590" e_stop="102363"/>
          <exon e_start="101873" e_stop="101644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGC</genome_strand>
        <mrna_strand>TCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414902" ref_strand="+" ref_description="SGN-E414902 [STM-20-I10]">
      <seq>caaaaatctcaattcttctctatcaatggcttccaccttggcttcctctgttatttcaaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagcccgattgaaaatcgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatccgctggtatatcttgtgcttatgaactcagcaagaaccctgatgttcatgtggccattcttgagcaatctgtgagccctggtggaagtgcttggctaagcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaagcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="101347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102729" g_stop="102363" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101647" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="597" r_length="227" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E414902" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102729" e_stop="102363"/>
          <exon e_start="101873" e_stop="101647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGT</genome_strand>
        <mrna_strand>CAAAAATCTCAATTCTTCTCTATCAATGGCTTCCACCTTGGCTTCCTCTGTTATTTCAAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCCCGATTGAAAATCGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCCGCTGGTATATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAAGTGCTTGGCTAAGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAAGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269632" ref_strand="+" ref_description="SGN-E269632 [cLEM-2-B12]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101649" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="609" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467570" ref_strand="+" ref_description="SGN-E467570 [cSTB-49-K24]">
      <seq>cttctccgccctaaatcccaaaaatctcaattcttctctatcaatggcttccaccttggcttcctctgttatttcaaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagcccgattgaaaatcgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatccgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaagtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103045" stop="101349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102745" g_stop="102363" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101649" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="613" r_length="225" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E467570" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102745" e_stop="102363"/>
          <exon e_start="101873" e_stop="101649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCGCCCTAAATCCC--AGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</genome_strand>
        <mrna_strand>CTTCTCCGCCCTAAATCCCAAAAATCTCAATTCTTCTCTATCAATGGCTTCCACCTTGGCTTCCTCTGTTATTTCAAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCCCGATTGAAAATCGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCCGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251754" ref_strand="+" ref_description="SGN-E251754 [cLEG-15-J9]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101649" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="607" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E251754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268828" ref_strand="+" ref_description="SGN-E268828 [cLEM-4-B22]">
      <seq>tccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103041" stop="101349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102741" g_stop="102363" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101649" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="604" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102741" e_stop="102363"/>
          <exon e_start="101873" e_stop="101649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</genome_strand>
        <mrna_strand>TCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272072" ref_strand="+" ref_description="SGN-E272072 [cLEM-8-J10]">
      <seq>cagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103027" stop="101349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102727" g_stop="102363" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101649" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="590" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272072" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102727" e_stop="102363"/>
          <exon e_start="101873" e_stop="101649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</genome_strand>
        <mrna_strand>CAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365541" ref_strand="+" ref_description="SGN-E365541 [cLPT-12-C22]">
      <seq>tctgtatttccaaaactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgtgaaatgactcggaggtatatgaccgatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactaagcaaaaaccctaatgttcaggtggccattcttgagcaatctgtgagccctggtggaagtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgccgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagctcttcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102983" stop="101349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102683" g_stop="102363" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101649" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="545" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E365541" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102683" e_stop="102363"/>
          <exon e_start="101873" e_stop="101649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</genome_strand>
        <mrna_strand>TCTGT-ATTTCCAAAACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGTGAAATGACTCGGAGGTATATGACCGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTAAGCAAAAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAAGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCCGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390733" ref_strand="+" ref_description="SGN-E390733 [TUS-47-C19]">
      <seq>tcatcactcagctctacacttgtcactcccctatatatatccttcttcttccccttccatttccacactcaaaactcaaaacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgtttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttgggccaggccaaatgtgaagctccttcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103132" stop="101351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102832" g_stop="102363" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101651" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="693" r_length="225" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E390733" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102832" e_stop="102363"/>
          <exon e_start="101873" e_stop="101651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACTCAGCTCTACACTTGTCACTCCCCTATATATATCCTTCTTCTTCCCCTTCCATTTCCACACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTT-GGCCAGGCCAAATGTGAAGCT-CTTCAATG</genome_strand>
        <mrna_strand>TCATCACTCAGCTCTACACTTGTCACTCCCCTATATATATCCTTCTTCTTCCCCTTCCATTTCCACACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTG-T-TTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGGCCAGGCCAAATGTGAAGCTCCTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271936" ref_strand="+" ref_description="SGN-E271936 [cLEM-8-G17]">
      <seq>gaaaacacaatcttctccgccctaaatgccgaggctcaattcttagacatcaatggctgccaccttagctgactgtgctatttccaagactaatgatattgacacacacaaatcatccttctatggcgctccaatttcatcacacactcaaccgagaatcttttaatcgactgcacaaaacatgtctgcttccatgtctgctgatgctcctcctccttacgatctcggaagtaccagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattggtggtgctggatctgctggattatcttgcgcttatgaactcagcaagaaccctaatgttcatgtggctattcttgagcaatctgtgagccctgctggaggtgcttggctaggtggacaactcttctctgctatggttgcgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103055" stop="101359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102756" g_stop="102363" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101659" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="609" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271936" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102756" e_stop="102363"/>
          <exon e_start="101873" e_stop="101659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCT</genome_strand>
        <mrna_strand>GAAAACACAATCTTCTCCGCCCTAAATGCCGAGGCTCAATTCTTAGACATCAATGGCTGCCACCTTAGCTGACTGTGCTATTTCCAAGACTAATGATATTGACACACACAAATCATCCTTCTATGGCGCTCCAATTTCATCACACACTCAACCGAGAATCTTTTAATCGACTGCACAAAACATGTCTGCTTCCATGTCTGCTGATGCTCCTCCTCCTTACGATCTCGGAAGTACCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGGTGGTGCTGGATCTGCTGGATTATCTTGCGCTTATGAACTCAGCAAGAACCCTAATGTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGCTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGCGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570231" ref_strand="+" ref_description="SGN-E570231 [14783]">
      <seq>ctaaatcccaaaaatctcaattcttctctataatggcttccaccttggcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaatcgttaaatccactccacaaaacatagctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="101361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102735" g_stop="102363" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101661" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="590" r_length="213" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E570231" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102735" e_stop="102363"/>
          <exon e_start="101873" e_stop="101661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCCC-AG-TTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAG</genome_strand>
        <mrna_strand>CTAAATCCCAAAAATCTCAATTCTTCTCTAT-AATGGCTTCCACCTTGGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCCACTCCACAAAACATAGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339482" ref_strand="+" ref_description="SGN-E339482 [cTOF-4-N16]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttggccaggccaaatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101663" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="599" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E339482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGA</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257276" ref_strand="+" ref_description="SGN-E257276 [cLEG-46-D23]">
      <seq>ttctccgccctaaatcccaattctcgattcttctccatcagtggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgactgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaacgaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgatcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaagtggacaactcttctctgctatggatgtgcggaagccagcacatcttctcttgaacgagctacgcgttgactacgacgagactgacaactacgtggtcatcaaacgcacgtgccttgtacacctcaagcatcatgagcaagcttttggccaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101672" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="585" r_length="203" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E257276" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGC-TGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGC</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAATTCTCGATTCTTCTCCATCAGTGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGACTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAACGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAAGTGGACAACTCTTCTCTGCTATGGATGTGCGGAAGCCAGCACATCTTCTCTTGAACGAGCTACGCGTTGACTACGACGAGACTGACAACTACGTGGTCATCAAACGCACGTGCCTTGTACACCTCAAGCATCATGAGCAAGCTTTTGGCCAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571219" ref_strand="+" ref_description="SGN-E571219 [11641]">
      <seq>gcaaaaatctcaattcttctctatcaatggcttccaccttgggcttcctctgttatttccaagactaaattcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaatcgttaaatccactccacaaaacatagctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagaccactacgtggtcatcaaaacacgctgcctttggtttcaccttcaaccatcatgagcaagctttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="101378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102730" g_stop="102363" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101677" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="574" r_length="202" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E571219" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102730" e_stop="102363"/>
          <exon e_start="101873" e_stop="101677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTT-AGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATC-AAACACGCTGCC-TT-G-TTCACC-TCAACCATCATGAGCAAGCTTTTGGC</genome_strand>
        <mrna_strand>GCAAAAATCTCAATTCTTCTCTATCAATGGCTTCCACCTTGGGCTTCCTCTGTTATTTCCAAGACTAAATTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCCACTCCACAAAACATAGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAAACACGCTGCCTTTGGTTTCACCTTCAACCATCATGAGCAAGCTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572756" ref_strand="+" ref_description="SGN-E572756 [31960]">
      <seq>ctaaatcccgaaaaatctcaattcttctctataatggcttccaccttggcttccttctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgtccaatttcatcacaagctcgattgaaaatcgttaaatcgatccacaaaacatggctgttccatgtctgctgcatgcttctcctcctcctcctccttatgatctcggaagtttcagttttaaatccgattaaggaatcgattgttgctcgggaaatgacacggcaggtatatgacggatatgatcacttatgctgcatactgatgtgtcattgttggtgctggatctgctggtttatcttgctgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagcaagacactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="101378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102724" g_stop="102363" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="386" r_length="372" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101678" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="581" r_length="195" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E572756" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102724" e_stop="102363"/>
          <exon e_start="101873" e_stop="101678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCC-TCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTG-ATG------CT--T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTT-AATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGG-AGGTATATGACGGATATGATTACTTATGCTG-ATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTG-TGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGG</genome_strand>
        <mrna_strand>ATCTCAATTCTTCTCTAT-AATGGCTTCCACCTTGGCTTCCTTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCG-TCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCGA-TCCACAAAACATGGCTG-TTCCATGTCTGCTGCATGCTTCTCCTCCTCCTCCTCCTTATGATCTCGGAAGTTTCAGTTTTAAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGCAGGTATATGACGGATATGATCACTTATGCTGCATACTGATG-TGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGCTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCAAGAC-ACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270355" ref_strand="+" ref_description="SGN-E270355 [cLEM-1-G6]">
      <seq>cagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtcataggnccctttaggcnaanttnagggcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103027" stop="101379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102727" g_stop="102363" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101679" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="579" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E270355" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102727" e_stop="102363"/>
          <exon e_start="101873" e_stop="101679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTC-T--G---C--T--G---A--T---G-CTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTG</genome_strand>
        <mrna_strand>CAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCATAGGNCCCTTTAGGCNAANTTNAGGGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412602" ref_strand="+" ref_description="SGN-E412602 [STM-16-F7]">
      <seq>caaaaatctcaattcttctctatcaatggcttccaccttggcttcctctgttatttcaaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagcccgattgaaaatcgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatccgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggntgtgcgtaagccagcacatcttttcctgaacgagctatgcattgactacgacgagcaagaccactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="101380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102729" g_stop="102363" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101680" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="564" r_length="194" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E412602" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102729" e_stop="102363"/>
          <exon e_start="101873" e_stop="101680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTT</genome_strand>
        <mrna_strand>CAAAAATCTCAATTCTTCTCTATCAATGGCTTCCACCTTGGCTTCCTCTGTTATTTCAAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCCCGATTGAAAATCGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCCGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGNTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTATGCATTGACTACGACGAGCAAGACCACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269877" ref_strand="+" ref_description="SGN-E269877 [cLEM-17-N7]">
      <seq>tcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103021" stop="101380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102721" g_stop="102363" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101680" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="553" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102721" e_stop="102363"/>
          <exon e_start="101873" e_stop="101680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTT</genome_strand>
        <mrna_strand>TCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363867" ref_strand="+" ref_description="SGN-E363867 [cLPT-10-J14]">
      <seq>aaaactaatttcattgttacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttacatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgtgaaatgactcggaggtatatgaccgatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactaagcaaaaaccctaatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgccgccttgttcacctcaaccatcatgagcaagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102971" stop="101380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102671" g_stop="102363" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101680" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="503" r_length="194" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E363867" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102671" e_stop="102363"/>
          <exon e_start="101873" e_stop="101680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTT</genome_strand>
        <mrna_strand>AAAACTAATTTCATTGTTACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTACATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGTGAAATGACTCGGAGGTATATGACCGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTAAGCAAAAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCCGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271958" ref_strand="+" ref_description="SGN-E271958 [cLEM-8-A6]">
      <seq>atttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102923" stop="101380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102623" g_stop="102363" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101680" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="455" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271958" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102623" e_stop="102363"/>
          <exon e_start="101873" e_stop="101680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTT</genome_strand>
        <mrna_strand>ATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329858" ref_strand="+" ref_description="SGN-E329858 [cTOD-3-B10]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101681" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="577" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E329858" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTT</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282702" ref_strand="+" ref_description="SGN-E282702 [cLER-15-P11]">
      <seq>aaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagcaagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102913" stop="101381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102613" g_stop="102363" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101681" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="444" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E282702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102613" e_stop="102363"/>
          <exon e_start="101873" e_stop="101681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTT</genome_strand>
        <mrna_strand>AAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286519" ref_strand="+" ref_description="SGN-E286519 [cLES-12-F23]">
      <seq>ctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctatgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103035" stop="101388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102735" g_stop="102363" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101688" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="559" r_length="186" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E286519" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102735" e_stop="102363"/>
          <exon e_start="101873" e_stop="101688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGC</genome_strand>
        <mrna_strand>CTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTATGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271006" ref_strand="+" ref_description="SGN-E271006 [cLEM-22-D13]">
      <seq>tcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctctcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctangcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102846" stop="101389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102546" g_stop="102363" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101689" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="369" r_length="185" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271006" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102546" e_stop="102363"/>
          <exon e_start="101873" e_stop="101689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAG</genome_strand>
        <mrna_strand>TCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCTCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTANGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269801" ref_strand="+" ref_description="SGN-E269801 [cLEM-17-K15]">
      <seq>aatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103048" stop="101391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102748" g_stop="102363" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101691" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="569" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102748" e_stop="102363"/>
          <exon e_start="101873" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATG</genome_strand>
        <mrna_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213381" ref_strand="+" ref_description="SGN-E213381 [cLEC-71-C4]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctangcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101691" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="567" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E213381" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATG</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTANGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272194" ref_strand="+" ref_description="SGN-E272194 [cLEM-19-C9]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101691" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="565" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATG</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268915" ref_strand="+" ref_description="SGN-E268915 [cLEM-4-P9]">
      <seq>ttcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103017" stop="101391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102717" g_stop="102363" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101691" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="538" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102717" e_stop="102363"/>
          <exon e_start="101873" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATG</genome_strand>
        <mrna_strand>TTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272982" ref_strand="+" ref_description="SGN-E272982 [cLEM-25-E10]">
      <seq>ttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcacgtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctangcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102921" stop="101391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102621" g_stop="102363" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101691" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="442" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272982" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102621" e_stop="102363"/>
          <exon e_start="101873" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATG</genome_strand>
        <mrna_strand>TTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTANGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290863" ref_strand="+" ref_description="SGN-E290863 [cLET-10-D21]">
      <seq>cccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgngcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaaccatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103029" stop="101392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102729" g_stop="102363" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101692" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="549" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E290863" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102729" e_stop="102363"/>
          <exon e_start="101873" e_stop="101692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCAT</genome_strand>
        <mrna_strand>CCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGNGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252042" ref_strand="+" ref_description="SGN-E252042 [cLEG-8-B19]">
      <seq>aaaacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcnttgttgggcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctcaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103055" stop="101396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102755" g_stop="102363" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.83"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101696" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="575" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E252042" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102755" e_stop="102363"/>
          <exon e_start="101873" e_stop="101696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATC-TTG-T--GCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCA</genome_strand>
        <mrna_strand>AAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCNTTGTTGGGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273273" ref_strand="+" ref_description="SGN-E273273 [cLEM-24-N3]">
      <seq>atcttctcccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacaccaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgccttgttcacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103047" stop="101401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="102363" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101701" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="560" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E273273" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="102363"/>
          <exon e_start="101873" e_stop="101701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCT-CCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACA-CAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTC</genome_strand>
        <mrna_strand>ATCTTCTCCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACCAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268901" ref_strand="+" ref_description="SGN-E268901 [cLEM-4-L7]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaagcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101710" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="546" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268901" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTT</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAAGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271382" ref_strand="+" ref_description="SGN-E271382 [cLEM-5-A10]">
      <seq>atcttctccgccctaaatcccagttctcaattcttctgcatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaagcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103047" stop="101413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="102363" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101713" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="546" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271382" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="102363"/>
          <exon e_start="101873" e_stop="101713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGC</genome_strand>
        <mrna_strand>ATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTGCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAAGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328769" ref_strand="+" ref_description="SGN-E328769 [cTOC-23-D6]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101713" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="543" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E328769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGC</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270300" ref_strand="+" ref_description="SGN-E270300 [cLEM-1-N17]">
      <seq>aatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103048" stop="101414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102748" g_stop="102363" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101714" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="546" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E270300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102748" e_stop="102363"/>
          <exon e_start="101873" e_stop="101714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTG</genome_strand>
        <mrna_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318661" ref_strand="+" ref_description="SGN-E318661 [cTOB-9-E11]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggctgtgcgtaagccatcacatcttttcttgaacgagctaggcattgtctacgacgagcaagacaactacgtggtcatcaaacacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101715" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="547" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E318661" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCT</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGCTGTGCGTAAGCCATCACATCTTTTCTTGAACGAGCTAGGCATTGTCTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268812" ref_strand="+" ref_description="SGN-E268812 [cLEM-4-L13]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101715" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="547" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCT</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272225" ref_strand="+" ref_description="SGN-E272225 [cLEM-19-O7]">
      <seq>aatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103048" stop="101415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102748" g_stop="102363" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101715" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="545" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102748" e_stop="102363"/>
          <exon e_start="101873" e_stop="101715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCT</genome_strand>
        <mrna_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272322" ref_strand="+" ref_description="SGN-E272322 [cLEM-19-H20]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101715" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="541" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCT</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278746" ref_strand="+" ref_description="SGN-E278746 [cLER-2-C22]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaacacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101715" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="541" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E278746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCT</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300402" ref_strand="+" ref_description="SGN-E300402 [cLET-45-M7]">
      <seq>aattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctacgcattgactacgacgagcaagacaactacgtggtcatcaaacacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103019" stop="101417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102719" g_stop="102363" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101717" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="514" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E300402" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102719" e_stop="102363"/>
          <exon e_start="101873" e_stop="101717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACG</genome_strand>
        <mrna_strand>AATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTACGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273222" ref_strand="+" ref_description="SGN-E273222 [cLEM-24-G11]">
      <seq>aatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacaccacaaatcatccttctatggcgttccaatttcatcaccaaactcgattgaaaatcgttaaatcgacctccaccaaaacatgtctgtttccatgtctgctgatgccttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgacctcggaggtatatgaccggatatgattaccttatgcctgatacctgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggaccactcttctctgctatggttgtgccgtaagccagcacatcttttcttgaaccgagctaggcattgactaccgacgagcaagacaactaccgtggtcatcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103048" stop="101419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102748" g_stop="102363" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101719" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="555" r_length="159" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E273222" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102748" e_stop="102363"/>
          <exon e_start="101873" e_stop="101719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACA-CACAAATCATCCTTCTATGGCGTTCCAATTTCATCA-CAAACTCGATTGAAAATCGTTAAATCGA-CTCCA-CAAAACATGTCTGTTTCCATGTCTGCTGATG-CTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGA-CTCGGAGGTATATGA-CGGATATGATTA-CTTATG-CTGATA-CTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGC-GTAAGCCAGCACATCTTTTCTTGAA-CGAGCTAGGCATTGACTA-CGACGAGCAAGACAACTA-CGTGGTCATCAAACA</genome_strand>
        <mrna_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACCACAAATCATCCTTCTATGGCGTTCCAATTTCATCACCAAACTCGATTGAAAATCGTTAAATCGACCTCCACCAAAACATGTCTGTTTCCATGTCTGCTGATGCCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACCTCGGAGGTATATGACCGGATATGATTACCTTATGCCTGATACCTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACCACTCTTCTCTGCTATGGTTGTGCCGTAAGCCAGCACATCTTTTCTTGAACCGAGCTAGGCATTGACTACCGACGAGCAAGACAACTACCGTGGTCATCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204708" ref_strand="+" ref_description="SGN-E204708 [cLEC-14-N9]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101719" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="539" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E204708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACA</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272290" ref_strand="+" ref_description="SGN-E272290 [cLEM-19-L15]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctangcattgactacgacgagcaagacaactacgtggtcatcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101719" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="537" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272290" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACA</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTANGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271049" ref_strand="+" ref_description="SGN-E271049 [cLEM-22-J8]">
      <seq>tccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103041" stop="101419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102741" g_stop="102363" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101719" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="534" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271049" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102741" e_stop="102363"/>
          <exon e_start="101873" e_stop="101719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACA</genome_strand>
        <mrna_strand>TCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269971" ref_strand="+" ref_description="SGN-E269971 [cLEM-7-J1]">
      <seq>taaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103034" stop="101419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102734" g_stop="102363" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101719" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="527" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102734" e_stop="102363"/>
          <exon e_start="101873" e_stop="101719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACA</genome_strand>
        <mrna_strand>TAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270727" ref_strand="+" ref_description="SGN-E270727 [cLEM-6-N13]">
      <seq>aaaacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103055" stop="101424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102755" g_stop="102363" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101724" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="543" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E270727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102755" e_stop="102363"/>
          <exon e_start="101873" e_stop="101724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATC</genome_strand>
        <mrna_strand>AAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323655" ref_strand="+" ref_description="SGN-E323655 [cTOC-2-E19]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctangcattgactacgacgagcaagacaactacgtggtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101724" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="534" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E323655" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATC</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTANGCATTGACTACGACGAGCAAGACAACTACGTGGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269304" ref_strand="+" ref_description="SGN-E269304 [cLEM-18-F23]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101724" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="532" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATC</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273165" ref_strand="+" ref_description="SGN-E273165 [cLEM-24-D24]">
      <seq>tcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgactacgacgagcaagacaactacgtggtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103030" stop="101424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102730" g_stop="102363" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101724" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="518" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E273165" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102730" e_stop="102363"/>
          <exon e_start="101873" e_stop="101724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATC</genome_strand>
        <mrna_strand>TCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268670" ref_strand="+" ref_description="SGN-E268670 [cLEM-9-A21]">
      <seq>aatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaagcattgactacgacgagcaagacaactacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103048" stop="101431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102748" g_stop="102363" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101731" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="529" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268670" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102748" e_stop="102363"/>
          <exon e_start="101873" e_stop="101731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGT</genome_strand>
        <mrna_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAAGCATTGACTACGACGAGCAAGACAACTACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470900" ref_strand="+" ref_description="SGN-E470900 [cSTB-21-M17]">
      <seq>caaaaatctcaattcttctctatcaatggcttccaccttggcttcctctgttatttcaaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagcccgattgaaaatcgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatccgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcctgaacgagctaggcattgactacgacgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="101443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102729" g_stop="102363" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101743" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="501" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E470900" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102729" e_stop="102363"/>
          <exon e_start="101873" e_stop="101743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCA</genome_strand>
        <mrna_strand>CAAAAATCTCAATTCTTCTCTATCAATGGCTTCCACCTTGGCTTCCTCTGTTATTTCAAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCCCGATTGAAAATCGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCCGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCCTGAACGAGCTAGGCATTGACTACGACGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294545" ref_strand="+" ref_description="SGN-E294545 [cLET-22-I22]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaagcattgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101752" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="510" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E294545" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTA</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAAGCATTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254427" ref_strand="+" ref_description="SGN-E254427 [cLEG-27-H17]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaggcattgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101753" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="509" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACT</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254425" ref_strand="+" ref_description="SGN-E254425 [cLEG-27-H13]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctgaatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagctaagcattgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101753" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="505" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254425" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACT</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGAATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAAGCATTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359196" ref_strand="+" ref_description="SGN-E359196 [cLHT-11-H9]">
      <seq>acaatcttctccgccctaagttccaattctcaattcttctccatcaatggcttccactttagcttcctctgttatttccaatactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggagtcgattgttgctcgtgaaatgactcggaggtatatgaccgatatgatcacttatgctgatactgatgttgttatagttggtgctggatctgctggtttatcttgtgcttatgaaatcagcaaaaaccctaatgttcaagtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgccatggttgtgcgtaagccaccacatcttttcttgaacgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101764" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="498" r_length="110" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E359196" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCT</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAGTTCCAATTCTCAATTCTTCTCCATCAATGGCTTCCACTTTAGCTTCCTCTGTTATTTCCAATACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAGTCGATTGTTGCTCGTGAAATGACTCGGAGGTATATGACCGATATGATCACTTATGCTGATACTGATGTTGTTATAGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAAATCAGCAAAAACCCTAATGTTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCCATGGTTGTGCGTAAGCCACCACATCTTTTCTTGAACGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272274" ref_strand="+" ref_description="SGN-E272274 [cLEM-19-F11]">
      <seq>ccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaagtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103028" stop="101465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102728" g_stop="102363" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101765" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="475" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272274" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102728" e_stop="102363"/>
          <exon e_start="101873" e_stop="101765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGC</genome_strand>
        <mrna_strand>CCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAAGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330864" ref_strand="+" ref_description="SGN-E330864 [cTOD-10-P9]">
      <seq>caagactaatttcattgacacacacaaatcgtccttggatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102972" stop="101465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102672" g_stop="102363" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101765" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="419" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E330864" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102672" e_stop="102363"/>
          <exon e_start="101873" e_stop="101765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGC</genome_strand>
        <mrna_strand>CAAGACTAATTTCATTGACACACACAAATCGTCCTTGGATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359387" ref_strand="+" ref_description="SGN-E359387 [cLHT-31-E7]">
      <seq>acaatcttctccgccctaagttccaattctcaattcttctccatcaatggcttccactttagcttcctctgttatttccaatactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggagtcgattgttgctcgtgaaatgactcggaggtatatgaccgatatgatcacttatgctgatactgatgttgttatagttggtgctggatctgctggtttatcttgtgcttatgaaatcagcaaaaaccctaatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgccatggttgtgcgtaagccaacacatcttttcttgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101768" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="494" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E359387" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACG</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAGTTCCAATTCTCAATTCTTCTCCATCAATGGCTTCCACTTTAGCTTCCTCTGTTATTTCCAATACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAGTCGATTGTTGCTCGTGAAATGACTCGGAGGTATATGACCGATATGATCACTTATGCTGATACTGATGTTGTTATAGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAAATCAGCAAAAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCCATGGTTGTGCGTAAGCCAACACATCTTTTCTTGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271969" ref_strand="+" ref_description="SGN-E271969 [cLEM-8-E8]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaagtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101768" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="494" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271969" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACG</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268739" ref_strand="+" ref_description="SGN-E268739 [cLEM-16-F18]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101768" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="490" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACG</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269289" ref_strand="+" ref_description="SGN-E269289 [cLEM-18-B1]">
      <seq>ttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102979" stop="101468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102679" g_stop="102363" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101768" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="423" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102679" e_stop="102363"/>
          <exon e_start="101873" e_stop="101768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACG</genome_strand>
        <mrna_strand>TTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474688" ref_strand="+" ref_description="SGN-E474688 [cSTB-37-K14]">
      <seq>caaaaatctcaattcttctctatcaatggcttccaccttggcttcctctgttatttcaaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagcccgattgaaaatcgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatccgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaagtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccatcacatcttttcctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="101470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102729" g_stop="102363" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101769" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="475" r_length="105" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E474688" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102729" e_stop="102363"/>
          <exon e_start="101873" e_stop="101769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAAC</genome_strand>
        <mrna_strand>CAAAAATCTCAATTCTTCTCTATCAATGGCTTCCACCTTGGCTTCCTCTGTTATTTCAAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCCCGATTGAAAATCGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCCGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCATCACATCTTTTCCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465672" ref_strand="+" ref_description="SGN-E465672 [cPRO-21-L6]">
      <seq>cttctccgccctaaatcccaaaaatctcaattcttctctataatggcttccaccttggcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaatcgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggattatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctatggttgtgcgtaagccagcacatctttttcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103045" stop="101471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102745" g_stop="102363" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101771" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="497" r_length="104" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E465672" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102745" e_stop="102363"/>
          <exon e_start="101873" e_stop="101771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCGCCCTAAATCCC--AGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATG------CT--T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATC-TTTTCTTGA</genome_strand>
        <mrna_strand>CTTCTCCGCCCTAAATCCCAAAAATCTCAATTCTTCTCTAT-AATGGCTTCCACCTTGGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGATTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313710" ref_strand="+" ref_description="SGN-E313710 [cTOA-17-K23]">
      <seq>tccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatcttttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103041" stop="101472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102741" g_stop="102363" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101772" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="481" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E313710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102741" e_stop="102363"/>
          <exon e_start="101873" e_stop="101772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTG</genome_strand>
        <mrna_strand>TCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331244" ref_strand="+" ref_description="SGN-E331244 [cTOD-6-M14]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaagccagcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101780" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="478" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E331244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATC</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271292" ref_strand="+" ref_description="SGN-E271292 [cLEM-5-L21]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactctgaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101790" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="468" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271292" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAG</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCTGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269761" ref_strand="+" ref_description="SGN-E269761 [cLEM-17-H22]">
      <seq>acaatcttctccgccctattttccagttctcaattcttctccatcaatgggttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctatggttgtgcgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101791" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="471" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269761" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAA</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTATTTTCCAGTTCTCAATTCTTCTCCATCAATGGGTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268888" ref_strand="+" ref_description="SGN-E268888 [cLEM-4-H7]">
      <seq>cacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103051" stop="101503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102751" g_stop="102363" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101803" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="460" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268888" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102751" e_stop="102363"/>
          <exon e_start="101873" e_stop="101803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</genome_strand>
        <mrna_strand>CACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270910" ref_strand="+" ref_description="SGN-E270910 [cLEM-6-P21]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaagtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101803" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="459" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E270910" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270091" ref_strand="+" ref_description="SGN-E270091 [cLEM-7-D15]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101803" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="459" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E270091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248248" ref_strand="+" ref_description="SGN-E248248 [cLEF-55-K9]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaaccagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101803" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="454" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E248248" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAAC-CAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272340" ref_strand="+" ref_description="SGN-E272340 [cLEM-19-N24]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaagtgcttggctaggtggacaactcttctctgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101803" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="455" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272340" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAAGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471082" ref_strand="+" ref_description="SGN-E471082 [cSTB-22-I22]">
      <seq>ctaaatcccaaaaatctcaattcttctctatcaatggcttccaccttggcttcctctgttatttccaagactaaattcattgacacacaccaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaatcgttaaatccactccacaaaacatagctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacaccggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="101503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102735" g_stop="102363" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101803" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="451" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E471082" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102735" e_stop="102363"/>
          <exon e_start="101873" e_stop="101803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCCC-AG-TTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACA-CAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGAC-TCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</genome_strand>
        <mrna_strand>CTAAATCCCAAAAATCTCAATTCTTCTCTATCAATGGCTTCCACCTTGGCTTCCTCTGTTATTTCCAAGACTAAATTCATTGACACACACCAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCCACTCCACAAAACATAGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACCGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272705" ref_strand="+" ref_description="SGN-E272705 [cLEM-21-E18]">
      <seq>cagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103027" stop="101503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102727" g_stop="102363" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101803" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="436" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102727" e_stop="102363"/>
          <exon e_start="101873" e_stop="101803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</genome_strand>
        <mrna_strand>CAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269439" ref_strand="+" ref_description="SGN-E269439 [cLEM-2-O21]">
      <seq>caaaacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103056" stop="101504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102756" g_stop="102363" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101804" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="464" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102756" e_stop="102363"/>
          <exon e_start="101873" e_stop="101804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTA</genome_strand>
        <mrna_strand>CAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271205" ref_strand="+" ref_description="SGN-E271205 [cLEM-5-A2]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcacttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggagctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101804" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="458" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271205" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTA</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCACTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGAGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269865" ref_strand="+" ref_description="SGN-E269865 [cLEM-17-H21]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="101504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102363" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101804" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="458" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102363"/>
          <exon e_start="101873" e_stop="101804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTA</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467644" ref_strand="+" ref_description="SGN-E467644 [cSTB-1-M8]">
      <seq>taaattcattgacaccaccaccaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaatcgttaaatccactccacaaaacatagctgtttccatgtctgctgatgcttctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgtcggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttcaggtggccattcttgagcaatctgtgagccctggtggaggtgcttggctaggcggacaactcttctctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102966" stop="101504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102666" g_stop="102363" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101804" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="380" r_length="70" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E467644" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102666" e_stop="102363"/>
          <exon e_start="101873" e_stop="101804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCATTGACA-CA-CA-CAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGC-T-T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTA</genome_strand>
        <mrna_strand>TAAATTCATTGACACCACCACCAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCCACTCCACAAAACATAGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTCGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGCGGACAACTCTTCTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319275" ref_strand="+" ref_description="SGN-E319275 [cTOB-16-G16]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggctgccacctcagcttcctctgttatttccaagactaatttcattgacacacacaaatcatacttctatggcgttccaatttcatcacaaactcgattgaaaatcgctaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaaggttcagtttcaatccgattaaggaatcaattgttgctcgcgaaatgactcgcaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaagtggctattcttgagcaatctgtgagccctggtggaggtgcttggctaggtggacaactcttctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101806" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="452" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E319275" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGC</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTGCCACCTCAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATACTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGCTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGGTTCAGTTTCAATCCGATTAAGGAATCAATTGTTGCTCGCGAAATGACTCGCAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394719" ref_strand="+" ref_description="SGN-E394719 [TUS-42-M10]">
      <seq>atcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttaacttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggaggaggtgcttggctaggtggacaactcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103047" stop="101511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="102363" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101811" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="448" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E394719" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="102363"/>
          <exon e_start="101873" e_stop="101811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTC</genome_strand>
        <mrna_strand>ATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAACTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGAGGAGGTGCTTGGCTAGGTGGACAACTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318511" ref_strand="+" ref_description="SGN-E318511 [cTOB-10-C22]">
      <seq>ccaggtctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagatttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgatggtgctggatctgctggtttatctagtgcttatgaactcagcacgaaccctaatgttcaggtggctattcttgagcaatctgtgagccctgggggaggtgctaggctaggtggacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103028" stop="101516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102728" g_stop="102363" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101816" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="424" r_length="58" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E318511" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102728" e_stop="102363"/>
          <exon e_start="101873" e_stop="101816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAAC</genome_strand>
        <mrna_strand>CCAGGTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGATTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGATGGTGCTGGATCTGCTGGTTTATCTAGTGCTTATGAACTCAGCACGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGGGGAGGTGCTAGGCTAGGTGGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391691" ref_strand="+" ref_description="SGN-E391691 [TUS-27-F20]">
      <seq>ccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcaacaagaaccctaatgttcaggtggctattcttgaacaatctgtgagccctggtggaggtgcttggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103028" stop="101529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102728" g_stop="102363" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101824" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="416" r_length="50" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E391691" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102728" e_stop="102363"/>
          <exon e_start="101873" e_stop="101824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGG</genome_strand>
        <mrna_strand>CCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAACAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAACAATCTGTGAGCCCTGGTGGAGGTGCTTGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325356" ref_strand="+" ref_description="SGN-E325356 [cTOC-1-A9]">
      <seq>aattcttctccatcaatggctttcaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgcttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103019" stop="101527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102719" g_stop="102363" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101827" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="404" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E325356" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102719" e_stop="102363"/>
          <exon e_start="101873" e_stop="101827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCT</genome_strand>
        <mrna_strand>AATTCTTCTCCATCAATGGCTTTCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312032" ref_strand="+" ref_description="SGN-E312032 [cTOA-11-A9]">
      <seq>ctcaattcttctccatcaatggcttgcaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcggtaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgtagccattgtaggtgctggatctgctggtttatcttgggcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggtggaggtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103022" stop="101531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102722" g_stop="102363" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101831" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="403" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E312032" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102722" e_stop="102363"/>
          <exon e_start="101873" e_stop="101831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTT</genome_strand>
        <mrna_strand>CTCAATTCTTCTCCATCAATGGCTTGCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGGTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTAGCCATTGTAGGTGCTGGATCTGCTGGTTTATCTTGGGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247853" ref_strand="+" ref_description="SGN-E247853 [cLEF-47-O3]">
      <seq>cacaatcttctccgccctaaatcccagttctcaattcttcgccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103051" stop="101541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102751" g_stop="102363" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101841" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="422" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E247853" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102751" e_stop="102363"/>
          <exon e_start="101873" e_stop="101841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGT</genome_strand>
        <mrna_strand>CACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCGCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312031" ref_strand="+" ref_description="SGN-E312031 [cTOA-11-A5]">
      <seq>agttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103026" stop="101541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102726" g_stop="102363" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101841" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="397" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E312031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102726" e_stop="102363"/>
          <exon e_start="101873" e_stop="101841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGT</genome_strand>
        <mrna_strand>AGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243365" ref_strand="+" ref_description="SGN-E243365 [cLEF-16-K4]">
      <seq>tcttctccgccctaaatcccacttctcaattcttctccatcaatggcttccaccttagcttcctctgttattttcaacactaattgcattgacacacacaaatcatccttctatggcgtcccaatttcatcacaaactcgattgaaaatcagttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatcccattaaagaatcgattgttgctcgcgaaatgactgggaggtatatgacggctatgattacttatgctgatactgatgttgacatggctggagctggatctgctggattatcttgtgcttatgaactgatcacgaaccctaatgttcaggtggctattcttgagcaatctgtgagccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="101543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102363" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101843" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="416" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E243365" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102363"/>
          <exon e_start="101873" e_stop="101843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATC-GTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTG</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCACTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTTCAACACTAATTGCATTGACACACACAAATCATCCTTCTATGGCGTCCCAATTTCATCACAAACTCGATTGAAAATCAGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCCATTAAAGAATCGATTGTTGCTCGCGAAATGACTGGGAGGTATATGACGGCTATGATTACTTATGCTGATACTGATGTTGACATGGCTGGAGCTGGATCTGCTGGATTATCTTGTGCTTATGAACTGATCACGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277521" ref_strand="+" ref_description="SGN-E277521 [cLER-3-L17]">
      <seq>catcactcagctctacacttgtcactcccctatatatatccttcttcttccccttccatttccacactcaaaactcaaaacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgtttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103131" stop="101544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102831" g_stop="102363" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101844" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="497" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E277521" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102831" e_stop="102363"/>
          <exon e_start="101873" e_stop="101844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACTCAGCTCTACACTTGTCACTCCCCTATATATATCCTTCTTCTTCCCCTTCCATTTCCACACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCT</genome_strand>
        <mrna_strand>CATCACTCAGCTCTACACTTGTCACTCCCCTATATATATCCTTCTTCTTCCCCTTCCATTTCCACACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTG-T-TTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244966" ref_strand="+" ref_description="SGN-E244966 [cLEF-2-O14]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaagtggctattcttgagcaatctgtgagccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101844" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="412" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E244966" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCT</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246909" ref_strand="+" ref_description="SGN-E246909 [cLEF-41-P19]">
      <seq>gcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgagcaatctgtgagccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102989" stop="101544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102689" g_stop="102363" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101844" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="357" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E246909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102689" e_stop="102363"/>
          <exon e_start="101873" e_stop="101844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCT</genome_strand>
        <mrna_strand>GCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAGCAATCTGTGAGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279908" ref_strand="+" ref_description="SGN-E279908 [cLER-8-A18]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttcaggtggctattcttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="101559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102363" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101873" g_stop="101859" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="397" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E279908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102363"/>
          <exon e_start="101873" e_stop="101859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTATAACTTCTTTTTTTTTTTTAAATTATTAATACCGAGTTCTTATAGCGTTTTTGAATTAACATACAATAAAAATTGGGTTTATCGTTGATACTAGACTTTTATCTGCAATTCGAATTCGATCTAGATTTGATATATGATAAATCAAGGCTCAGGTGACTTGTTCTGGCCTCGATTGTATCCCTCTCTTGCAAATTCACGTGATACTGATTGACTTGACATCACGAATTTTGAATTTTATCGGCTCAAAAGAAAACACAGGTTTCCTGTTAAAAGTATTTTACAACTTTACTTTTACTCATAAATCATGTGATACTTTTGTCCTTAGCCTAATTTGCTAGTATTAATTTGAGTGGGGCAATTCACACGTAACACACCATTCGCGATCACAATGAACTCATTTGATGTTCTGATAGCTATAATTTTGGTAGATTACAATATCTATGTTCTTCAATTTGTTGTTTATGTGAATTTACTTTATATGTATAGGTGGCTATTCTTGAG</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTATTCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269859" ref_strand="+" ref_description="SGN-E269859 [cLEM-17-D23]">
      <seq>aaaacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcaacaagaaccctaatgttcaggtggctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103055" stop="102061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102755" g_stop="102363" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269859" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102755" e_stop="102363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG</genome_strand>
        <mrna_strand>AAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAACAAGAACCCTAATGTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470820" ref_strand="+" ref_description="SGN-E470820 [cSTB-20-L15]">
      <seq>cttctccgccctaaatcccaaaaatctcaattcttctctataatggcttccaccttggcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaagctcgattgaaaatcgttaaatcgactccacaaaacatggctgtttccatgtctgctgatgcttctcctcctcctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgggaaatgacacggaggtatatgacggatatgatcacttatgctgatactgatgttgttattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctgatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103045" stop="102065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102745" g_stop="102365" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E470820" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102745" e_stop="102365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCGCCCTAAATCCC--AGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATG------CT--T-CTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTC</genome_strand>
        <mrna_strand>CTTCTCCGCCCTAAATCCCAAAAATCTCAATTCTTCTCTAT-AATGGCTTCCACCTTGGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAGCTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGGCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTCCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGGGAAATGACACGGAGGTATATGACGGATATGATCACTTATGCTGATACTGATGTTGTTATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTGATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272863" ref_strand="+" ref_description="SGN-E272863 [cLEM-25-O4]">
      <seq>ctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttntaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="102984" stop="102065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102684" g_stop="102365" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E272863" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102684" e_stop="102365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTC</genome_strand>
        <mrna_strand>CTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTNTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270705" ref_strand="+" ref_description="SGN-E270705 [cLEM-6-D17]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="102068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102369" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E270705" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAAT</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309456" ref_strand="+" ref_description="SGN-E309456 [cTOA-2-O16]">
      <seq>aatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103048" stop="102069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102748" g_stop="102369" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E309456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102748" e_stop="102369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAAT</genome_strand>
        <mrna_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245196" ref_strand="+" ref_description="SGN-E245196 [cLEF-13-J17]">
      <seq>tccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgctaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgatggtgctggatctgctggattatcttgtgcttatgaactcagcaagaaccctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103041" stop="102069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102741" g_stop="102369" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E245196" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102741" e_stop="102369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAAT</genome_strand>
        <mrna_strand>TCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGCTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGATGGTGCTGGATCTGCTGGATTATCTTGTGCTTATGAACTCAGCAAGAACCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325490" ref_strand="+" ref_description="SGN-E325490 [cTOC-1-L4]">
      <seq>tctcaattcttttctcaatggcttcaccttagcttcttgtatttcagactaatttcattgacacacacaaatatccttctatggcgttcaatttatcacaaactcattgaaaatcgtaatcgactccacaaaacatgtctgttccatgtctgctgatgctttcctccttacgatctcgaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaactcagcaagaaccctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103023" stop="102069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102723" g_stop="102369" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E325490" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.050" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102723" e_stop="102369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAAT</genome_strand>
        <mrna_strand>TCTCAATTCTT-TTC-TCAATGGCTT-CACCTTAGCTT-CT-TG-TATTT-C-AGACTAATTTCATTGACACACACAAAT-ATCCTTCTATGGCGTT-CAATTT-ATCACAAACTC-ATTGAAAATCG-T-AATCGACTCCACAAAACATGTCTG-TTCCATGTCTGCTGATGCTT-TCCTCCTTACGATCTC-GAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258390" ref_strand="+" ref_description="SGN-E258390 [cLEG-47-M11]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtatcagttttaatccgattaatgaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggattatcttgtgcttatgaactccgcaagaacccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="102071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102371" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E258390" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTA</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTATCAGTTTTAATCCGATTAATGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGATTATCTTGTGCTTATGAACTCCGCAAGAACCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268713" ref_strand="+" ref_description="SGN-E268713 [cLEM-16-J1]">
      <seq>gcacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttccctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaagaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggagctggatctgctggtttatcttgtgcttatgaactcagcaagaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103051" stop="102073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102752" g_stop="102373" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268713" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102752" e_stop="102373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCC</genome_strand>
        <mrna_strand>GCACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCC-CTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAAGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGAGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268737" ref_strand="+" ref_description="SGN-E268737 [cLEM-16-F14]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="102086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102386" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E268737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAAC</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370667" ref_strand="+" ref_description="SGN-E370667 [TUS-27-M24]">
      <seq>acaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactgatgttgtcattgttggtgctggatctgctggtttatcttgtgcttatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="102087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102387" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E370667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAA</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269363" ref_strand="+" ref_description="SGN-E269363 [cLEM-18-B17]">
      <seq>acaatcttctccgccctaaaacccagttctgggttcttctgcatgaatggcttgcaccttagcttcctctgttatttgcaagactaatttcattgacacacacaaatcatgcttctatggcgttccaatttcatcacaaactcgattgagaatcggtgaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctccgaagtttcagttttaatccgattaaggaatcgattgatgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103050" stop="102137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="102437" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E269363" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="102437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTG</genome_strand>
        <mrna_strand>ACAATCTTCTCCGCCCTAAAACCCAGTTCTGGGTTCTTCTGCATGAATGGCTTGCACCTTAGCTTCCTCTGTTATTTGCAAGACTAATTTCATTGACACACACAAATCATGCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAGAATCGGTGAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCCGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGATGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396337" ref_strand="+" ref_description="SGN-E396337 [TUS-47-D19]">
      <seq>tcatcactcagctctacacttgtcactcccctatataaatccttcttcttccccttccatttccacactcaaaactcaaaacacaatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtcggctgatgcttctcctccttacgatctcggaagtttcagttttaatccgaattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatatgattacttatgctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103132" stop="102140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102832" g_stop="102440" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E396337" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102832" e_stop="102440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACTCAGCTCTACACTTGTCACTCCCCTATATATATCCTTCTTCTTCCCCTTCCATTTCCACACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCG-ATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATA</genome_strand>
        <mrna_strand>TCATCACTCAGCTCTACACTTGTCACTCCCCTATATAAATCCTTCTTCTTCCCCTTCCATTTCCACACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCGGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGAATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270690" ref_strand="+" ref_description="SGN-E270690 [cLEM-6-M14]">
      <seq>aatcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103048" stop="102157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102748" g_stop="102457" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E270690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102748" e_stop="102457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATAT</genome_strand>
        <mrna_strand>AATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270672" ref_strand="+" ref_description="SGN-E270672 [cLEM-6-E14]">
      <seq>tcttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgcttctcctccttacgatctcggaagtttcagttttaatccgattaaggaatcgattgttgctcgcgaaatgactcggaggtatatgacggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103046" stop="102158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="102458" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E270672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="102458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATA</genome_strand>
        <mrna_strand>TCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281187" ref_strand="+" ref_description="SGN-E281187 [cLER-7-P10]">
      <seq>ttctccgccctaaatcccagttctcaattcttctccatcaatggcttccaccttagcttcctctgttatttccaagactaatttcattgacacacacaaatcatccttctatggcgttccaatttcatcacaaactcgattgaaaatcgttaaatcgactccacaaaacatgtctgtttccatgtctgctgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="103044" stop="102249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="102549" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E281187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="102549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCT</genome_strand>
        <mrna_strand>TTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248785" ref_strand="+" ref_description="SGN-E248785 [cLEG-5-K11]">
      <seq>ctgaaaccttcatgggagaaagcagccaatattataagagagagatatgaccgggaatcggatgggcgtattcttgtggcaaaagttgattgcactgaagaagttgatttgtgtagaaggaatcacatacaaaggtatccctccattcgcatcttcagaaaaggaactgatgttagagacgatcacggacaccatgatcacgagtcatactatggggatcgtgatacagatagcttagtcaagatgatggaagatttggttgcacctatcaagctggattctcaaacgattacttcagataattcgtctaccaagctggaaactggcttgaaaagacctgctcctgtaactggaggatgcagaatagaaggttttgtacgtgttaagaaggttcctggcaaccttgtcatatcagctcgttcagctgctcattcatttgatgcttctcagatgaacatgtcacatgtaatttctagcttttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="113932" stop="116822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114234" g_stop="114312" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="119" r_length="76" r_score="0.835"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114313" i_stop="114973" i_length="661">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114974" g_stop="115030" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="176" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115031" i_stop="115742" i_length="712">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115743" g_stop="115809" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="243" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115810" i_stop="116050" i_length="241">
            <donor d_prob="0.399" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116051" g_stop="116197" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="390" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116428" g_stop="116522" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="485" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E248785" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114234" e_stop="114312"/>
          <exon e_start="114974" e_stop="115030"/>
          <exon e_start="115743" e_stop="115809"/>
          <exon e_start="116051" e_stop="116197"/>
          <exon e_start="116428" e_stop="116522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGACCGGGAAATAGGAAGGGGGGTATTATTGTGCCAAAAATGGATTGCAATGAAAGAAGTTGATTTGTGTGAAAGGTATTACTAGTGTGAAAAATTACAGGTTTAGTGAAAGGGTATTAATGAACCTGTTCGGTAAAACCTATTGGTCACCAAAAAATTCAAATTTTGATTTAATCATCTTTGTTTCTGTGTTCAAGAAAAGAATGCTGAACCTGTTCGGTAAAACCTTTTTGTCACCAAAAAATTACAATTTGAATTAAATCATCTTTGTTTCTGTGTTCAAGAAAAGACGGTTAATCTAATTGTTTCCTCACAATCTAAAAAATGGAGAAGAGCAACTGAGCTTCAAATCCTTGATTACACATGTCTGGTGGATTCTCAAACTATGAGGAGAGGTTCAGTTAGTTTAGGGGATAGTATTAATGTTACCTCAGCTATCACAGACATAATACTCAATCTACATAATCCTTCAATTCAATTTCTCAATTGCTGCAGTGTTGATTGGTTGAACCGTGACAGTGAACTTGCAAAAAAATAGATATATCACCTGACTAAAGGAGGAGATTAGGTTGGACTTTGTACTATATGCTTTAGTAAGGAGTCCTTGTGTGTCCCGCAAGTAGTTTGATGAAAGTGCTTAGAGTTGTCTTGACTAATGTTCTTTTGGTTTATGAGTTTCTTACTATGATTTCATTTTATCCTTATGCCTAATAATCATCTAATAATAAATTTTCAGGAATCACATACAAGGGTATCCCTCCATTCGCATCTTCAGAAAAGGAACTGATGTTAGGTAAGCCATTAACTTATCTTTATCACTTATCAACTTGCACTACTACTAATTAAAATTTTAAAATTGTTTAATGTCCTTCATAATTTATTGGTTTGACTATGATCCCAAACCATCTTAAATTCAAAAGAAAAAGAGAAAATCTCCTGTTAGTTCTTATTACGTTGTTAACTGTAGGCTGTTGTTGTGTGACTGGTCACATCAATGCTAAGGTGTTAGATTTTCCAGCATGATTACAGGTGCACTTGTTATTTTTATTTGACCCCTTTCCGAAAGTTTTGAACCTTATCAGCGCAACTTTTGGCCATGTAAAATGTACTGAAATTCCTCTTCTTCACCATTCTATCTTTTGCCTTCTCTTTTAATCTCTACCGGCTTCTACTTTTCATGCTGAAAATTTTGAGCAGCTTGATCACTTTGTTGAAGTTCTTATCTCTACCCCTTGTGAGTTATAAGTGTAGTAACCCTTGTTAAAGTTGCTACAAGCATTCCAATTTCTGAATAATTAGAGCTGTACATTACCCAGTGTTTGGATGGTGGAGGTAAAAACTAAATAGGAAAGTAGATAGGTCAGTGTTTGTTAACTTTACATCATTTCAACTTTGATATTTGGCCCATGTACTTGGAAGTTTAATGAATTCTGTTTTTTTTAAAGCCTAAATCTCATTCGCATGGTTCTTATAATGTATTATTGTTTACTATGCTTGCCATGCAGAGACGATCACGGACACCATGATCACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAGGTGAGAACAATTGGGCTTGAATAAGGAAAAGAAGAAAACATTAAAAGAGGAAAACTTAAGGATGGTTAAGATTGAGAAAAAAAACAGAGCTGATCCACTTCATGCTTCCTTTTTGCAATCACAGGGCACAGCTGTTTGTACTGATTTTTCACAATGCAATGTGGCAGTTGTGTTGCATTAGATGTTATTGTATCATTTGTATCATGCCATTGAGATGACTGGTATATTTATTCTTCTGCAGATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAGGTAAGCAAGTTATTGATGGCAGCCAGTAAAAATTAAGTGCCCCTGCAACTGCAACTCAAACTTAAAAAACACAAGGATGATGCTGGAGACGATATGAAATATGATATGTTTTAAGTTGTTTGAAATATAAACCTGGGCAGTAAGATTGTTGAAGTGCTCATGCATTGTTGTCTTGCTACTCTTAAATATTTGACAAAGTAATATATCCATTTATGTTATGTACTGTTCAGGTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATT</genome_strand>
        <mrna_strand>GATATGACCGGG-AATCGGATG-GGCGTATTCTTGTGGCAAAAGTTGATTGCACTG-AAGAAGTTGATTTGTGTAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACATACAAAGGTATCCCTCCATTCGCATCTTCAGAAAAGGAACTGATGTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGATCACGGACACCATGATCACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAG.................................................................................................................................................................................................................................................ATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAG......................................................................................................................................................................................................................................GTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247480" ref_strand="+" ref_description="SGN-E247480 [cLEG-3-O21]">
      <seq>tgaaaccttcatgggagaaagcagccaatattataagagagagatatgaccgggaatcggatgggcgtattcttgtggcaaaagttgattgcactgaagaagttgatttgtgtagaaggaatcacatacaagggtatccctccattcgcatcttcagaaaaggaactgatgttagagacgatcacggacaccatgatcacgagtcatactatggggatcgtgatacagatagcttagtcaagatgatggaagatttggttgcacctatcaagctggattctcaaacgattacttcagataattcgtctaccaagctggaaactggcttgaaaagacctgctcctgtaactggaggatgcagaatagaaggttttgtacgtgttaagaaggttcctggcaaccttgtcatatcagctcgttcagctgctcattcatttgatgcttctcagatgaacatgtcacatgtaatttctagcttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="113932" stop="116821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114234" g_stop="114312" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="118" r_length="76" r_score="0.835"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114313" i_stop="114973" i_length="661">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114974" g_stop="115030" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="175" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115031" i_stop="115742" i_length="712">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115743" g_stop="115809" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="242" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115810" i_stop="116050" i_length="241">
            <donor d_prob="0.399" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116051" g_stop="116197" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="389" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116428" g_stop="116521" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="483" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E247480" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114234" e_stop="114312"/>
          <exon e_start="114974" e_stop="115030"/>
          <exon e_start="115743" e_stop="115809"/>
          <exon e_start="116051" e_stop="116197"/>
          <exon e_start="116428" e_stop="116521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGACCGGGAAATAGGAAGGGGGGTATTATTGTGCCAAAAATGGATTGCAATGAAAGAAGTTGATTTGTGTGAAAGGTATTACTAGTGTGAAAAATTACAGGTTTAGTGAAAGGGTATTAATGAACCTGTTCGGTAAAACCTATTGGTCACCAAAAAATTCAAATTTTGATTTAATCATCTTTGTTTCTGTGTTCAAGAAAAGAATGCTGAACCTGTTCGGTAAAACCTTTTTGTCACCAAAAAATTACAATTTGAATTAAATCATCTTTGTTTCTGTGTTCAAGAAAAGACGGTTAATCTAATTGTTTCCTCACAATCTAAAAAATGGAGAAGAGCAACTGAGCTTCAAATCCTTGATTACACATGTCTGGTGGATTCTCAAACTATGAGGAGAGGTTCAGTTAGTTTAGGGGATAGTATTAATGTTACCTCAGCTATCACAGACATAATACTCAATCTACATAATCCTTCAATTCAATTTCTCAATTGCTGCAGTGTTGATTGGTTGAACCGTGACAGTGAACTTGCAAAAAAATAGATATATCACCTGACTAAAGGAGGAGATTAGGTTGGACTTTGTACTATATGCTTTAGTAAGGAGTCCTTGTGTGTCCCGCAAGTAGTTTGATGAAAGTGCTTAGAGTTGTCTTGACTAATGTTCTTTTGGTTTATGAGTTTCTTACTATGATTTCATTTTATCCTTATGCCTAATAATCATCTAATAATAAATTTTCAGGAATCACATACAAGGGTATCCCTCCATTCGCATCTTCAGAAAAGGAACTGATGTTAGGTAAGCCATTAACTTATCTTTATCACTTATCAACTTGCACTACTACTAATTAAAATTTTAAAATTGTTTAATGTCCTTCATAATTTATTGGTTTGACTATGATCCCAAACCATCTTAAATTCAAAAGAAAAAGAGAAAATCTCCTGTTAGTTCTTATTACGTTGTTAACTGTAGGCTGTTGTTGTGTGACTGGTCACATCAATGCTAAGGTGTTAGATTTTCCAGCATGATTACAGGTGCACTTGTTATTTTTATTTGACCCCTTTCCGAAAGTTTTGAACCTTATCAGCGCAACTTTTGGCCATGTAAAATGTACTGAAATTCCTCTTCTTCACCATTCTATCTTTTGCCTTCTCTTTTAATCTCTACCGGCTTCTACTTTTCATGCTGAAAATTTTGAGCAGCTTGATCACTTTGTTGAAGTTCTTATCTCTACCCCTTGTGAGTTATAAGTGTAGTAACCCTTGTTAAAGTTGCTACAAGCATTCCAATTTCTGAATAATTAGAGCTGTACATTACCCAGTGTTTGGATGGTGGAGGTAAAAACTAAATAGGAAAGTAGATAGGTCAGTGTTTGTTAACTTTACATCATTTCAACTTTGATATTTGGCCCATGTACTTGGAAGTTTAATGAATTCTGTTTTTTTTAAAGCCTAAATCTCATTCGCATGGTTCTTATAATGTATTATTGTTTACTATGCTTGCCATGCAGAGACGATCACGGACACCATGATCACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAGGTGAGAACAATTGGGCTTGAATAAGGAAAAGAAGAAAACATTAAAAGAGGAAAACTTAAGGATGGTTAAGATTGAGAAAAAAAACAGAGCTGATCCACTTCATGCTTCCTTTTTGCAATCACAGGGCACAGCTGTTTGTACTGATTTTTCACAATGCAATGTGGCAGTTGTGTTGCATTAGATGTTATTGTATCATTTGTATCATGCCATTGAGATGACTGGTATATTTATTCTTCTGCAGATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAGGTAAGCAAGTTATTGATGGCAGCCAGTAAAAATTAAGTGCCCCTGCAACTGCAACTCAAACTTAAAAAACACAAGGATGATGCTGGAGACGATATGAAATATGATATGTTTTAAGTTGTTTGAAATATAAACCTGGGCAGTAAGATTGTTGAAGTGCTCATGCATTGTTGTCTTGCTACTCTTAAATATTTGACAAAGTAATATATCCATTTATGTTATGTACTGTTCAGGTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCAT</genome_strand>
        <mrna_strand>GATATGACCGGG-AATCGGATG-GGCGTATTCTTGTGGCAAAAGTTGATTGCACTG-AAGAAGTTGATTTGTGTAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACATACAAGGGTATCCCTCCATTCGCATCTTCAGAAAAGGAACTGATGTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGATCACGGACACCATGATCACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAG.................................................................................................................................................................................................................................................ATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAG......................................................................................................................................................................................................................................GTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430850" ref_strand="+" ref_description="SGN-E430850 [STM-54-M20]">
      <seq>atcacatacaagggtatccctccattcgcatcttcagaaaaggatccgatgttagagacgatcatggacaccatgatcacgagtcatactatggcgatcgtgatacagacagcttagtcaaggtgagaaaaattgggcttggataaggaaaagaagaaaacattaaaagaggagaacttaaggatggttaagattgagaagaaaaacagagctgatgatggaagatttggttgcacctatcaagttggattctcaaatgatttcttctgataattcgtctaccaatctggaaactggcttgaaaagacctgctcctgtaactggaggatgcagaatagaaggttttgtacgcgttaaaaaggttcctggcaaccttgtcatatcagctcgttcagctgctcattcatttgatgcttctcagatgaacatgtcacatgtaatttctagcttttcatttggtaagacaataactccgaaggttatgagtgatatcaaaatactgctaccacatttgggtcgaagccatgatcggttgaatggtaactcatatgttactaatcccagagattctacagaaaatgttactattgaacatttttcttcagtggtgaaaacagaggtgatgacnagatcgtacaaattagttgaggagtacgagtacacagcgcatagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="114676" stop="117540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114976" g_stop="115030" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115031" i_stop="115742" i_length="712">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115743" g_stop="115901" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="214" r_length="159" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115902" i_stop="116050" i_length="149">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116051" g_stop="116197" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="361" r_length="147" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116428" g_stop="116652" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="586" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116653" i_stop="117151" i_length="499">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117152" g_stop="117240" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="675" r_length="89" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E430850" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114976" e_stop="115030"/>
          <exon e_start="115743" e_stop="115901"/>
          <exon e_start="116051" e_stop="116197"/>
          <exon e_start="116428" e_stop="116652"/>
          <exon e_start="117152" e_stop="117240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACATACAAGGGTATCCCTCCATTCGCATCTTCAGAAAAGGAACTGATGTTAGGTAAGCCATTAACTTATCTTTATCACTTATCAACTTGCACTACTACTAATTAAAATTTTAAAATTGTTTAATGTCCTTCATAATTTATTGGTTTGACTATGATCCCAAACCATCTTAAATTCAAAAGAAAAAGAGAAAATCTCCTGTTAGTTCTTATTACGTTGTTAACTGTAGGCTGTTGTTGTGTGACTGGTCACATCAATGCTAAGGTGTTAGATTTTCCAGCATGATTACAGGTGCACTTGTTATTTTTATTTGACCCCTTTCCGAAAGTTTTGAACCTTATCAGCGCAACTTTTGGCCATGTAAAATGTACTGAAATTCCTCTTCTTCACCATTCTATCTTTTGCCTTCTCTTTTAATCTCTACCGGCTTCTACTTTTCATGCTGAAAATTTTGAGCAGCTTGATCACTTTGTTGAAGTTCTTATCTCTACCCCTTGTGAGTTATAAGTGTAGTAACCCTTGTTAAAGTTGCTACAAGCATTCCAATTTCTGAATAATTAGAGCTGTACATTACCCAGTGTTTGGATGGTGGAGGTAAAAACTAAATAGGAAAGTAGATAGGTCAGTGTTTGTTAACTTTACATCATTTCAACTTTGATATTTGGCCCATGTACTTGGAAGTTTAATGAATTCTGTTTTTTTTAAAGCCTAAATCTCATTCGCATGGTTCTTATAATGTATTATTGTTTACTATGCTTGCCATGCAGAGACGATCACGGACACCATGATCACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAGGTGAGAACAATTGGGCTTGAATAAGGAAAAGAAGAAAACATTAAAAGAGGAAAACTTAAGGATGGTTAAGATTGAGAAAAAAAACAGAGCTGATCCACTTCATGCTTCCTTTTTGCAATCACAGGGCACAGCTGTTTGTACTGATTTTTCACAATGCAATGTGGCAGTTGTGTTGCATTAGATGTTATTGTATCATTTGTATCATGCCATTGAGATGACTGGTATATTTATTCTTCTGCAGATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAGGTAAGCAAGTTATTGATGGCAGCCAGTAAAAATTAAGTGCCCCTGCAACTGCAACTCAAACTTAAAAAACACAAGGATGATGCTGGAGACGATATGAAATATGATATGTTTTAAGTTGTTTGAAATATAAACCTGGGCAGTAAGATTGTTGAAGTGCTCATGCATTGTTGTCTTGCTACTCTTAAATATTTGACAAAGTAATATATCCATTTATGTTATGTACTGTTCAGGTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATAGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACTGTAAGCTCCTACTCACCTACTATATTCTCTCTCTTTTTTTTTTGGGAGAAGTAATTGTTGAATTATGTGACCATCTCATCTCAACATTTGGGTTCCTATTTTGGTGGGTTAATGGTGATTGGTCTCTTTGTTTGGTCTTGGGAAATCCTTGCCTCTTGAGCTTGCTTTTGAGGTTGAGTTAGATCCAATATTCATTTTCTTATGAGTGATATTTTATAAATGATAAAGTAACACTAAGACAGTGCATTAAAATTGCCTAGTGTTCAAAGCACCAATCATTTATAAATTTAAATGTTATAATTTTACATTTTTGCTGCTTTTACAGACTCCGGTCTATAAAATCTTACGGAAGTATAAAGAAATCTCAATTCTCAGTCACTGTTTCATCTGCTCTCCACAAGTTTTTGGGTGCACTTCTATGATATTTTTCAGCTGGTACATTAATAAAGAGTTTCAAGGATGACCAGAAAACCTAGCTCACCTTTTATCTTTATTGCAGATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAG</genome_strand>
        <mrna_strand>ATCACATACAAGGGTATCCCTCCATTCGCATCTTCAGAAAAGGATCCGATGTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGATCATGGACACCATGATCACGAGTCATACTATGGCGATCGTGATACAGACAGCTTAGTCAAGGTGAGAAAAATTGGGCTTGGATAAGGAAAAGAAGAAAACATTAAAAGAGGAGAACTTAAGGATGGTTAAGATTGAGAAGAAAAACAGAGCTG.....................................................................................................................................................ATGATGGAAGATTTGGTTGCACCTATCAAGTTGGATTCTCAAATGATTTCTTCTGATAATTCGTCTACCAATCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGCGTTAAAAAG......................................................................................................................................................................................................................................GTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATAACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATCGGTTGAATGGTAACTCATATGTTACTAATCCCAGAGATTCTACAGAAAATGTTACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAACATTTTTCTTCAGTGGTGAAAACAGAGGTGATGACNAGATCGTACAAATTAGTTGAGGAGTACGAGTACACAGCGCATAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462663" ref_strand="+" ref_description="SGN-E462663 [cPRO-12-I4]">
      <seq>atcacatacaagggtatccctccattcgcatcttcagaaaaggatccgatgttagagacgatcatggacaccatgatcacgagtcatactatggcgatcgtgatacagacagcttagtcaaggtgagaaaaattgggcttggataaggaaaagaagaaaacattaaaagaggagaacttaaggatggttaagattgagaagaaaaacagagctgatgatggaagatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="114676" stop="116366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114976" g_stop="115030" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115031" i_stop="115742" i_length="712">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115743" g_stop="115901" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="214" r_length="159" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115902" i_stop="116050" i_length="149">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116051" g_stop="116066" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="230" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E462663" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114976" e_stop="115030"/>
          <exon e_start="115743" e_stop="115901"/>
          <exon e_start="116051" e_stop="116066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACATACAAGGGTATCCCTCCATTCGCATCTTCAGAAAAGGAACTGATGTTAGGTAAGCCATTAACTTATCTTTATCACTTATCAACTTGCACTACTACTAATTAAAATTTTAAAATTGTTTAATGTCCTTCATAATTTATTGGTTTGACTATGATCCCAAACCATCTTAAATTCAAAAGAAAAAGAGAAAATCTCCTGTTAGTTCTTATTACGTTGTTAACTGTAGGCTGTTGTTGTGTGACTGGTCACATCAATGCTAAGGTGTTAGATTTTCCAGCATGATTACAGGTGCACTTGTTATTTTTATTTGACCCCTTTCCGAAAGTTTTGAACCTTATCAGCGCAACTTTTGGCCATGTAAAATGTACTGAAATTCCTCTTCTTCACCATTCTATCTTTTGCCTTCTCTTTTAATCTCTACCGGCTTCTACTTTTCATGCTGAAAATTTTGAGCAGCTTGATCACTTTGTTGAAGTTCTTATCTCTACCCCTTGTGAGTTATAAGTGTAGTAACCCTTGTTAAAGTTGCTACAAGCATTCCAATTTCTGAATAATTAGAGCTGTACATTACCCAGTGTTTGGATGGTGGAGGTAAAAACTAAATAGGAAAGTAGATAGGTCAGTGTTTGTTAACTTTACATCATTTCAACTTTGATATTTGGCCCATGTACTTGGAAGTTTAATGAATTCTGTTTTTTTTAAAGCCTAAATCTCATTCGCATGGTTCTTATAATGTATTATTGTTTACTATGCTTGCCATGCAGAGACGATCACGGACACCATGATCACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAGGTGAGAACAATTGGGCTTGAATAAGGAAAAGAAGAAAACATTAAAAGAGGAAAACTTAAGGATGGTTAAGATTGAGAAAAAAAACAGAGCTGATCCACTTCATGCTTCCTTTTTGCAATCACAGGGCACAGCTGTTTGTACTGATTTTTCACAATGCAATGTGGCAGTTGTGTTGCATTAGATGTTATTGTATCATTTGTATCATGCCATTGAGATGACTGGTATATTTATTCTTCTGCAGATGATGGAAGATTTGG</genome_strand>
        <mrna_strand>ATCACATACAAGGGTATCCCTCCATTCGCATCTTCAGAAAAGGATCCGATGTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGATCATGGACACCATGATCACGAGTCATACTATGGCGATCGTGATACAGACAGCTTAGTCAAGGTGAGAAAAATTGGGCTTGGATAAGGAAAAGAAGAAAACATTAAAAGAGGAGAACTTAAGGATGGTTAAGATTGAGAAGAAAAACAGAGCTG.....................................................................................................................................................ATGATGGAAGATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543573" ref_strand="+" ref_description="SGN-E543573 [TUS-65-H9]">
      <seq>atcacgagtcatactatggggatcgtgatacagatagcttagtcaaggtgagaacaattgggcttgaataaggaaaagaagaaaacattaaaagaggaaaacttaaggatggttaagattgagaaaaaaaacagagctgatccacttcatgcttcctttttgcaatcacagggcacagctgtttgtactgatttttcacaatgcaatgtggcagttgtgttgcattagatgttattgtatcatttgtatcatgccattgagatgactggtatatttattcttctgcagatgatggaagatttggttgcacctatcaagctggattctcaaacgattacttcagataattcgtctaccaagctggaaactggcttgaaaagacctgctcctgtaactggaggatgcagaatagaaggttttgtacgtgttaagaaggttcctggcaaccttgtcatatcagctcgttcagctgctcattcatttgatgcttctcagatgaacatgtcacatgtaatttctagcttttcatttggtaagacaattactccgaaggttatgagtgatatcaaaatactgctaccacatttgggtcgaagccatgataggttgaatggtaactcatatgttactaatccaagagattccacagaaaatgttactattgaacattttcttcaagtggtgaaaacagaggtgatgacaagatcgtacaaattagttgaggagtacgagtacacggcacatagtagtttggttcatagtcttcacataccagtagcgaaatttcattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="115463" stop="117583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115763" g_stop="116197" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116428" g_stop="116652" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="660" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116653" i_stop="117151" i_length="499">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117152" g_stop="117283" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="792" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E543573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115763" e_stop="116197"/>
          <exon e_start="116428" e_stop="116652"/>
          <exon e_start="117152" e_stop="117283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAGGTGAGAACAATTGGGCTTGAATAAGGAAAAGAAGAAAACATTAAAAGAGGAAAACTTAAGGATGGTTAAGATTGAGAAAAAAAACAGAGCTGATCCACTTCATGCTTCCTTTTTGCAATCACAGGGCACAGCTGTTTGTACTGATTTTTCACAATGCAATGTGGCAGTTGTGTTGCATTAGATGTTATTGTATCATTTGTATCATGCCATTGAGATGACTGGTATATTTATTCTTCTGCAGATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAGGTAAGCAAGTTATTGATGGCAGCCAGTAAAAATTAAGTGCCCCTGCAACTGCAACTCAAACTTAAAAAACACAAGGATGATGCTGGAGACGATATGAAATATGATATGTTTTAAGTTGTTTGAAATATAAACCTGGGCAGTAAGATTGTTGAAGTGCTCATGCATTGTTGTCTTGCTACTCTTAAATATTTGACAAAGTAATATATCCATTTATGTTATGTACTGTTCAGGTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATAGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACTGTAAGCTCCTACTCACCTACTATATTCTCTCTCTTTTTTTTTTGGGAGAAGTAATTGTTGAATTATGTGACCATCTCATCTCAACATTTGGGTTCCTATTTTGGTGGGTTAATGGTGATTGGTCTCTTTGTTTGGTCTTGGGAAATCCTTGCCTCTTGAGCTTGCTTTTGAGGTTGAGTTAGATCCAATATTCATTTTCTTATGAGTGATATTTTATAAATGATAAAGTAACACTAAGACAGTGCATTAAAATTGCCTAGTGTTCAAAGCACCAATCATTTATAAATTTAAATGTTATAATTTTACATTTTTGCTGCTTTTACAGACTCCGGTCTATAAAATCTTACGGAAGTATAAAGAAATCTCAATTCTCAGTCACTGTTTCATCTGCTCTCCACAAGTTTTTGGGTGCACTTCTATGATATTTTTCAGCTGGTACATTAATAAAGAGTTTCAAGGATGACCAGAAAACCTAGCTCACCTTTTATCTTTATTGCAGATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTAT</genome_strand>
        <mrna_strand>ATCACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAGGTGAGAACAATTGGGCTTGAATAAGGAAAAGAAGAAAACATTAAAAGAGGAAAACTTAAGGATGGTTAAGATTGAGAAAAAAAACAGAGCTGATCCACTTCATGCTTCCTTTTTGCAATCACAGGGCACAGCTGTTTGTACTGATTTTTCACAATGCAATGTGGCAGTTGTGTTGCATTAGATGTTATTGTATCATTTGTATCATGCCATTGAGATGACTGGTATATTTATTCTTCTGCAGATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAG......................................................................................................................................................................................................................................GTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATAGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304629" ref_strand="+" ref_description="SGN-E304629 [cLEX-11-A1]">
      <seq>acgagtcatactatggggatcgtgatacagatagcttagtcaaggtgagaacaattgggcttgaataaggaaaagaagaaaacattaaaagaggaaaacttaaggatggttaagattgataaaaaaaacagagctgatccacttcatgcttcctttttgcaatcacagggcacagctgtttgtactgatttttcacaatgcaatgtggcagttgtgttgcattagatgttattgtatcatttgtatcatgccattgagatgactggtatatttattcttctgcagatgatggaagatttggttgcacctatcaagctggattctcaaacgattacttcagataattcgtctaccaagctggaaactggcttgaaaagacctgctcctgtaactggaggatgcagaatagaaggttttgtacgtgttaagaaggttcctggcaaccttgtcatatcagctcgttcagctgctcattcatttgatgcttctcagatgaacatgtcacatgtaatttctagcttttcatttggtaagacaattactccgaaggttatgagtgatatcaaaatactgctaccacatttgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="115466" stop="116884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115766" g_stop="116197" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116428" g_stop="116584" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="589" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E304629" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115766" e_stop="116197"/>
          <exon e_start="116428" e_stop="116584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAGGTGAGAACAATTGGGCTTGAATAAGGAAAAGAAGAAAACATTAAAAGAGGAAAACTTAAGGATGGTTAAGATTGAGAAAAAAAACAGAGCTGATCCACTTCATGCTTCCTTTTTGCAATCACAGGGCACAGCTGTTTGTACTGATTTTTCACAATGCAATGTGGCAGTTGTGTTGCATTAGATGTTATTGTATCATTTGTATCATGCCATTGAGATGACTGGTATATTTATTCTTCTGCAGATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAGGTAAGCAAGTTATTGATGGCAGCCAGTAAAAATTAAGTGCCCCTGCAACTGCAACTCAAACTTAAAAAACACAAGGATGATGCTGGAGACGATATGAAATATGATATGTTTTAAGTTGTTTGAAATATAAACCTGGGCAGTAAGATTGTTGAAGTGCTCATGCATTGTTGTCTTGCTACTCTTAAATATTTGACAAAGTAATATATCCATTTATGTTATGTACTGTTCAGGTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTC</genome_strand>
        <mrna_strand>ACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAGGTGAGAACAATTGGGCTTGAATAAGGAAAAGAAGAAAACATTAAAAGAGGAAAACTTAAGGATGGTTAAGATTGATAAAAAAAACAGAGCTGATCCACTTCATGCTTCCTTTTTGCAATCACAGGGCACAGCTGTTTGTACTGATTTTTCACAATGCAATGTGGCAGTTGTGTTGCATTAGATGTTATTGTATCATTTGTATCATGCCATTGAGATGACTGGTATATTTATTCTTCTGCAGATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAG......................................................................................................................................................................................................................................GTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592422" ref_strand="-" ref_description="SGN-E592422 [46155]">
      <seq>gatttggttggcacctatcaagttggattctcaaatgatttcttcggataattcgtctaccaagctggaaactggcttgaaaagacctgctcctgtaactggaggatgcagaatagaaggttttgtacgtgttaaaaaaggttcctggcaaccttgtcatatcagctcgttcagctgctcattcatttgatgcttctcagatgaacatgtcacatgtaatttctagcttttcatttggtaagacaataactccgaaggttatgagtgatatcaaaatactgctaccacatttgggtcgaagccatgatcggttgaatggtaactcatatgttactaatccaagagattctacagaaaatgttactattgaacattttcttcaagtggtgaaaacagaggtgatgacaagatcgtacaaattagttgaggagtacgagtacacagcgcatagtagtttggttcatagtcttcatataccagtagtgaaatttcattatgagccatcaccaatgcaggtcttgattacagaaaatcccaagtccttttcacattttcttaccaatgtctgcgctattattggtggcgttttcacggttgccggcatactggactcgattctgcacaacacaatgagaatggtgaaaaaagttgagctaggaaagaatttttgaggagcgtagtctgatgatagaaatttagtttgtgcactatatttaagctggatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="115760" stop="118032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116060" g_stop="116197" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230">
            <donor d_prob="0.849" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116428" g_stop="116652" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="365" r_length="225" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116653" i_stop="117151" i_length="499">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117152" g_stop="117301" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="515" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117302" i_stop="117392" i_length="91">
            <donor d_prob="0.884" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117393" g_stop="117470" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="593" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117471" i_stop="117598" i_length="128">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117599" g_stop="117733" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="728" r_length="135" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E592422" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592422" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="116060" e_stop="116197"/>
          <exon e_start="116428" e_stop="116652"/>
          <exon e_start="117152" e_stop="117301"/>
          <exon e_start="117393" e_stop="117470"/>
          <exon e_start="117599" e_stop="117733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGGTT-GCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTT-AAGAAGGTAAGCAAGTTATTGATGGCAGCCAGTAAAAATTAAGTGCCCCTGCAACTGCAACTCAAACTTAAAAAACACAAGGATGATGCTGGAGACGATATGAAATATGATATGTTTTAAGTTGTTTGAAATATAAACCTGGGCAGTAAGATTGTTGAAGTGCTCATGCATTGTTGTCTTGCTACTCTTAAATATTTGACAAAGTAATATATCCATTTATGTTATGTACTGTTCAGGTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATAGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACTGTAAGCTCCTACTCACCTACTATATTCTCTCTCTTTTTTTTTTGGGAGAAGTAATTGTTGAATTATGTGACCATCTCATCTCAACATTTGGGTTCCTATTTTGGTGGGTTAATGGTGATTGGTCTCTTTGTTTGGTCTTGGGAAATCCTTGCCTCTTGAGCTTGCTTTTGAGGTTGAGTTAGATCCAATATTCATTTTCTTATGAGTGATATTTTATAAATGATAAAGTAACACTAAGACAGTGCATTAAAATTGCCTAGTGTTCAAAGCACCAATCATTTATAAATTTAAATGTTATAATTTTACATTTTTGCTGCTTTTACAGACTCCGGTCTATAAAATCTTACGGAAGTATAAAGAAATCTCAATTCTCAGTCACTGTTTCATCTGCTCTCCACAAGTTTTTGGGTGCACTTCTATGATATTTTTCAGCTGGTACATTAATAAAGAGTTTCAAGGATGACCAGAAAACCTAGCTCACCTTTTATCTTTATTGCAGATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTATGAGCCATCACCAATGCAGGTGTTGCATCAGTACATTTCGTGATTATGTGATATAGCTTAATACATCTTATTTTGGTTTCTTATTCTTATTATTTGTCCTTTGCTATCAGGTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACGGTCAGTCTCTCCTACTTGCCTCTCCTGTTGTTTCACACCGTCATTCCCTGCTAACAACTTTCTCTGGGCTTTCATTTGTGTCATCTTTATTGAAACTTCCCTATATTCGTTCTTTTTGGGTGGCATAGGTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAA</genome_strand>
        <mrna_strand>GATTTGGTTGGCACCTATCAAGTTGGATTCTCAAATGATTTCTTCGGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAAAAAG......................................................................................................................................................................................................................................GTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATAACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATCGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCTACAGAAAATGTTACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACAGCGCATAGTAGTTTGGTTCATAGTCTTCATATACCAGTAGTGAAATTTCATTATGAGCCATCACCAATGCAG...........................................................................................GTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGCGTTTTCACG................................................................................................................................GTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGCGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATATTTAAGCTGGATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610832" ref_strand="-" ref_description="SGN-E610832 [58002]">
      <seq>acctattcaagttggaactctcaaatgatttcttcggataattcgtctaccaagctggaaactggccttgaaaaagacctgcctcctgtaactggaggatgcagaatagaaggttttgtacgtgtaaagaaggttcctggaaacctggtcatatcagctcgttcagctgctcattcatttgatgcttctcagatgaacatgtcacatgtcatttctagcttttcatttggtaagacaataactccgaaggttatgagtgatatcaaaatactgctaccacatttgggtcgaagccatgatcggttgaatggtaactcatatgttactaatccaagagattccacagaaaatgttactattgaacattttcttcaagtggtgaaaacagaggtgatgacaagatcgtacaaattagttgaggagtacgagtacacagcacatagtagtttggttcatagtcttcatataccagtagtgaaatttcattatgagccatcgccaatgcaggtcttgattacagaaaatcccaagtccttttcacattttcttaccaatgtctgcgctattattggtggtgtttttacggttgccggcatactggactcgattctgcacaacacaatgagaatggtgaaaaaagttgagctaggaaagaatttttgaggagcgtagtctgatgatagaaatttagtttgtgcactataattatacgctttaaaaatatactatattagatattctcttcgtgaaaacatgtttcttgcaaaaaaaaaaaaaaaaaaaaactcgcaaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="115771" stop="118074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116071" g_stop="116197" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230">
            <donor d_prob="0.849" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116428" g_stop="116652" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="357" r_length="225" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116653" i_stop="117151" i_length="499">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117152" g_stop="117301" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="507" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117302" i_stop="117392" i_length="91">
            <donor d_prob="0.884" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117393" g_stop="117470" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="585" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117471" i_stop="117598" i_length="128">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117599" g_stop="117758" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="745" r_length="160" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="765" polyA_stop="786"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E610832" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610832" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="116071" e_stop="116197"/>
          <exon e_start="116428" e_stop="116652"/>
          <exon e_start="117152" e_stop="117301"/>
          <exon e_start="117393" e_stop="117470"/>
          <exon e_start="117599" e_stop="117758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTA-TCAAGCTGG-ATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGG-CTTG-AAAAGACCTG-CTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAGGTAAGCAAGTTATTGATGGCAGCCAGTAAAAATTAAGTGCCCCTGCAACTGCAACTCAAACTTAAAAAACACAAGGATGATGCTGGAGACGATATGAAATATGATATGTTTTAAGTTGTTTGAAATATAAACCTGGGCAGTAAGATTGTTGAAGTGCTCATGCATTGTTGTCTTGCTACTCTTAAATATTTGACAAAGTAATATATCCATTTATGTTATGTACTGTTCAGGTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATAGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACTGTAAGCTCCTACTCACCTACTATATTCTCTCTCTTTTTTTTTTGGGAGAAGTAATTGTTGAATTATGTGACCATCTCATCTCAACATTTGGGTTCCTATTTTGGTGGGTTAATGGTGATTGGTCTCTTTGTTTGGTCTTGGGAAATCCTTGCCTCTTGAGCTTGCTTTTGAGGTTGAGTTAGATCCAATATTCATTTTCTTATGAGTGATATTTTATAAATGATAAAGTAACACTAAGACAGTGCATTAAAATTGCCTAGTGTTCAAAGCACCAATCATTTATAAATTTAAATGTTATAATTTTACATTTTTGCTGCTTTTACAGACTCCGGTCTATAAAATCTTACGGAAGTATAAAGAAATCTCAATTCTCAGTCACTGTTTCATCTGCTCTCCACAAGTTTTTGGGTGCACTTCTATGATATTTTTCAGCTGGTACATTAATAAAGAGTTTCAAGGATGACCAGAAAACCTAGCTCACCTTTTATCTTTATTGCAGATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTATGAGCCATCACCAATGCAGGTGTTGCATCAGTACATTTCGTGATTATGTGATATAGCTTAATACATCTTATTTTGGTTTCTTATTCTTATTATTTGTCCTTTGCTATCAGGTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACGGTCAGTCTCTCCTACTTGCCTCTCCTGTTGTTTCACACCGTCATTCCCTGCTAACAACTTTCTCTGGGCTTTCATTTGTGTCATCTTTATTGAAACTTCCCTATATTCGTTCTTTTTGGGTGGCATAGGTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTC</genome_strand>
        <mrna_strand>ACCTATTCAAGTTGGAACTCTCAAATGATTTCTTCGGATAATTCGTCTACCAAGCTGGAAACTGGCCTTGAAAAAGACCTGCCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTAAAGAAG......................................................................................................................................................................................................................................GTTCCTGGAAACCTGGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTCATTTCTAGCTTTTCATTTGGTAAGACAATAACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATCGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACAGCACATAGTAGTTTGGTTCATAGTCTTCATATACCAGTAGTGAAATTTCATTATGAGCCATCGCCAATGCAG...........................................................................................GTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTTACG................................................................................................................................GTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGCGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAAATATACTATATTAGATATTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607344" ref_strand="-" ref_description="SGN-E607344 [23307]">
      <seq>tgctcctgtaactggaggatgcagaatagaaggttttgtacgtgtaaagaaggttcctggaaaccttgtcatatcagctcgttcagctgctcattcatttgatgcttctcagatgaacatgtcacatgtcatttctagcttttcatttggtaagacaataactccgaaggttatgagtgatatcaaaatactgctaccacatttgggtcgaagccatgatcggttgaatggtaactcatatgttactaatccaagagattccacagaaaatgttactattgaacattttcttcaagtggtgaaaacagaggtgatgacaagatcgtacaaattagttgaggagtacgagtacacagcacatagtagtttggttcatagtcttcatataccagtagtgaaatttcattatgagccatcgccaatgcaggtcttgattacagaaaatcccaagtccttttcacattttcttaccaatgtctgcgctattattggtggtgtttttacggttgccggcatactggactcgattctgcacaacacaatgagaatggtgaaaaaagttgagctaggaaagaatttttgaggagcgtagtctgatgatagaaatttagtttgtgcactataattatacgctttaaaaatatactatattagatattctcttcgtgaaaacatgtttcttgcaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="115846" stop="118074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116146" g_stop="116197" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230">
            <donor d_prob="0.849" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116428" g_stop="116652" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="277" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116653" i_stop="117151" i_length="499">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117152" g_stop="117301" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="427" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117302" i_stop="117392" i_length="91">
            <donor d_prob="0.884" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117393" g_stop="117470" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="505" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117471" i_stop="117598" i_length="128">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117599" g_stop="117758" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="665" r_length="160" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="702"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E607344" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607344" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="116146" e_stop="116197"/>
          <exon e_start="116428" e_stop="116652"/>
          <exon e_start="117152" e_stop="117301"/>
          <exon e_start="117393" e_stop="117470"/>
          <exon e_start="117599" e_stop="117758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAGGTAAGCAAGTTATTGATGGCAGCCAGTAAAAATTAAGTGCCCCTGCAACTGCAACTCAAACTTAAAAAACACAAGGATGATGCTGGAGACGATATGAAATATGATATGTTTTAAGTTGTTTGAAATATAAACCTGGGCAGTAAGATTGTTGAAGTGCTCATGCATTGTTGTCTTGCTACTCTTAAATATTTGACAAAGTAATATATCCATTTATGTTATGTACTGTTCAGGTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATAGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACTGTAAGCTCCTACTCACCTACTATATTCTCTCTCTTTTTTTTTTGGGAGAAGTAATTGTTGAATTATGTGACCATCTCATCTCAACATTTGGGTTCCTATTTTGGTGGGTTAATGGTGATTGGTCTCTTTGTTTGGTCTTGGGAAATCCTTGCCTCTTGAGCTTGCTTTTGAGGTTGAGTTAGATCCAATATTCATTTTCTTATGAGTGATATTTTATAAATGATAAAGTAACACTAAGACAGTGCATTAAAATTGCCTAGTGTTCAAAGCACCAATCATTTATAAATTTAAATGTTATAATTTTACATTTTTGCTGCTTTTACAGACTCCGGTCTATAAAATCTTACGGAAGTATAAAGAAATCTCAATTCTCAGTCACTGTTTCATCTGCTCTCCACAAGTTTTTGGGTGCACTTCTATGATATTTTTCAGCTGGTACATTAATAAAGAGTTTCAAGGATGACCAGAAAACCTAGCTCACCTTTTATCTTTATTGCAGATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTATGAGCCATCACCAATGCAGGTGTTGCATCAGTACATTTCGTGATTATGTGATATAGCTTAATACATCTTATTTTGGTTTCTTATTCTTATTATTTGTCCTTTGCTATCAGGTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACGGTCAGTCTCTCCTACTTGCCTCTCCTGTTGTTTCACACCGTCATTCCCTGCTAACAACTTTCTCTGGGCTTTCATTTGTGTCATCTTTATTGAAACTTCCCTATATTCGTTCTTTTTGGGTGGCATAGGTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTC</genome_strand>
        <mrna_strand>TGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTAAAGAAG......................................................................................................................................................................................................................................GTTCCTGGAAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTCATTTCTAGCTTTTCATTTGGTAAGACAATAACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATCGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACAGCACATAGTAGTTTGGTTCATAGTCTTCATATACCAGTAGTGAAATTTCATTATGAGCCATCGCCAATGCAG...........................................................................................GTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTTACG................................................................................................................................GTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGCGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAAATATACTATATTAGATATTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548900" ref_strand="+" ref_description="SGN-E548900 [TUS-65-H9](-)">
      <seq>aactggaggatgcagaatagaaggttttgtacgtgttaagaaggttcctggcaaccttgtcatatcagctcgttcagctgctcattcatttgatgcttctcagatgaacatgtcacatgtaatttctagcttttcatttggtaagacaattactccgaaggttatgagtgatatcaaaatactgctaccacatttgggtcgaagccatgataggttgaatggtaactcatatgttactaatccaagagattccacagaaaatgttactattgaacattttcttcaagtggtgaaaacagaggtgatgacaagatcgtacaaattagttgaggagtacgagtacacggcacatagtagtttggttcatagtcttcacataccagtagcgaaatttcattatgagccatcaccaatgcaggtcttgattacagaaaatcccaagtccttttcacattttcttaccaatgtctgcgctattattggtggtgttttcacggttgccggcatactggactcgattctgcacaacacaatgagaatggtgaaaaaaagttgagctaggaaagaatttttgaggagagtagtctgatgatagaaatttagtttgtgcactataattatacgctttaaaattatactatattagatattctcttcgtttacagcaagtcttgaaaacatttttcttgcatcaagagttctggtgatctgcaccaaatatattagtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="115855" stop="118131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116155" g_stop="116197" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116428" g_stop="116652" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="268" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116653" i_stop="117151" i_length="499">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117152" g_stop="117301" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="418" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117302" i_stop="117392" i_length="91">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117393" g_stop="117470" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="496" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117471" i_stop="117598" i_length="128">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117599" g_stop="117830" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="729" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="730" polyA_stop="743"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E548900" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116155" e_stop="116197"/>
          <exon e_start="116428" e_stop="116652"/>
          <exon e_start="117152" e_stop="117301"/>
          <exon e_start="117393" e_stop="117470"/>
          <exon e_start="117599" e_stop="117830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAGGTAAGCAAGTTATTGATGGCAGCCAGTAAAAATTAAGTGCCCCTGCAACTGCAACTCAAACTTAAAAAACACAAGGATGATGCTGGAGACGATATGAAATATGATATGTTTTAAGTTGTTTGAAATATAAACCTGGGCAGTAAGATTGTTGAAGTGCTCATGCATTGTTGTCTTGCTACTCTTAAATATTTGACAAAGTAATATATCCATTTATGTTATGTACTGTTCAGGTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATAGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACTGTAAGCTCCTACTCACCTACTATATTCTCTCTCTTTTTTTTTTGGGAGAAGTAATTGTTGAATTATGTGACCATCTCATCTCAACATTTGGGTTCCTATTTTGGTGGGTTAATGGTGATTGGTCTCTTTGTTTGGTCTTGGGAAATCCTTGCCTCTTGAGCTTGCTTTTGAGGTTGAGTTAGATCCAATATTCATTTTCTTATGAGTGATATTTTATAAATGATAAAGTAACACTAAGACAGTGCATTAAAATTGCCTAGTGTTCAAAGCACCAATCATTTATAAATTTAAATGTTATAATTTTACATTTTTGCTGCTTTTACAGACTCCGGTCTATAAAATCTTACGGAAGTATAAAGAAATCTCAATTCTCAGTCACTGTTTCATCTGCTCTCCACAAGTTTTTGGGTGCACTTCTATGATATTTTTCAGCTGGTACATTAATAAAGAGTTTCAAGGATGACCAGAAAACCTAGCTCACCTTTTATCTTTATTGCAGATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTATGAGCCATCACCAATGCAGGTGTTGCATCAGTACATTTCGTGATTATGTGATATAGCTTAATACATCTTATTTTGGTTTCTTATTCTTATTATTTGTCCTTTGCTATCAGGTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACGGTCAGTCTCTCCTACTTGCCTCTCCTGTTGTTTCACACCGTCATTCCCTGCTAACAACTTTCTCTGGGCTTTCATTTGTGTCATCTTTATTGAAACTTCCCTATATTCGTTCTTTTTGGGTGGCATAGGTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTG-AAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTCGTTTACAGCAAGTCTTGAAAACATTTTTCTTGCATCAAGAGTTCTGGTGATCTGCACCAAATATATTAGTAA</genome_strand>
        <mrna_strand>AACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAG......................................................................................................................................................................................................................................GTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATAGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTATGAGCCATCACCAATGCAG...........................................................................................GTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACG................................................................................................................................GTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTCGTTTACAGCAAGTCTTGAAAACATTTTTCTTGCATCAAGAGTTCTGGTGATCTGCACCAAATATATTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614195" ref_strand="+" ref_description="SGN-E614195 [63978]">
      <seq>ctttattgttgcagattgaacattttcttcaagtggtgaaaacagaggtgatgacaagatcgtacaaattagttgaggagtacgagtacacagcacatagtagtttggttcatagtcttcatataccagtagtgaaatttcattatgagccatcgccaatgcaggtcttgattacagaaaatcccaagtccttttcacattttcttaccaatgtctgcgctattattggtggtgtttttacggttgccggcatactggactcgattctgcacaacacaatgagaatggtgaaaaaagttgagctaggaaagaatttttgaggagcgtagtctgatgatagaaatttagtttgtgcactataattatacgctttaaaaatatactatattagatattctcttcgtgaaaacatgtttcttgcatcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="116840" stop="118074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117138" g_stop="117301" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117302" i_stop="117392" i_length="91">
            <donor d_prob="0.884" d_score="0.94"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117393" g_stop="117470" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="242" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117471" i_stop="117598" i_length="128">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117599" g_stop="117758" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="402" r_length="160" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E614195" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117138" e_stop="117301"/>
          <exon e_start="117393" e_stop="117470"/>
          <exon e_start="117599" e_stop="117758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTTATTGCAGATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTATGAGCCATCACCAATGCAGGTGTTGCATCAGTACATTTCGTGATTATGTGATATAGCTTAATACATCTTATTTTGGTTTCTTATTCTTATTATTTGTCCTTTGCTATCAGGTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACGGTCAGTCTCTCCTACTTGCCTCTCCTGTTGTTTCACACCGTCATTCCCTGCTAACAACTTTCTCTGGGCTTTCATTTGTGTCATCTTTATTGAAACTTCCCTATATTCGTTCTTTTTGGGTGGCATAGGTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTC</genome_strand>
        <mrna_strand>CTTTATTGTTGCAGATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACAGCACATAGTAGTTTGGTTCATAGTCTTCATATACCAGTAGTGAAATTTCATTATGAGCCATCGCCAATGCAG...........................................................................................GTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTTACG................................................................................................................................GTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGCGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAAATATACTATATTAGATATTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217785" ref_strand="+" ref_description="SGN-E217785 [cLEL-23-G23](-)">
      <seq>gaaaatcccaagtccttttcacattttcttaccaatgtctgcgctattattggtggtgttttcacggttgccggcatactggactcgattctgcacaacacaatgagaatggtgaaaaaagttgagctaggaaagaatttttgaggagagtagtctgatgatagaaatttagtttgtgcactataattatacgctttaaaattatactatattagatattctcttcgtttacagcaagtcttgaaaacatttttcttgcatcaagagttctggtgatctgcacccaatatattagtaaatttctcgtgcaggcgctttaatttgtggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="117105" stop="118163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117405" g_stop="117470" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117471" i_stop="117598" i_length="128">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117599" g_stop="117860" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="328" r_length="262" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="346"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E217785" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117405" e_stop="117470"/>
          <exon e_start="117599" e_stop="117860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACGGTCAGTCTCTCCTACTTGCCTCTCCTGTTGTTTCACACCGTCATTCCCTGCTAACAACTTTCTCTGGGCTTTCATTTGTGTCATCTTTATTGAAACTTCCCTATATTCGTTCTTTTTGGGTGGCATAGGTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTCGTTTACAGCAAGTCTTGAAAACATTTTTCTTGCATCAAGAGTTCTGGTGATCTGCACCAAATATATTAGTAAATTTCTCGTGCAGGCGCTTTAATTTGTGGA</genome_strand>
        <mrna_strand>GAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACG................................................................................................................................GTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTCGTTTACAGCAAGTCTTGAAAACATTTTTCTTGCATCAAGAGTTCTGGTGATCTGCACCCAATATATTAGTAAATTTCTCGTGCAGGCGCTTTAATTTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218285" ref_strand="+" ref_description="SGN-E218285 [cLEL-23-G23](-)">
      <seq>gctattattggtggtgttttcacggttgccggcatactggactcgattctgcacaacacaatgagaatggtgaaaaaagttgagctaggaaagaatttttgaggagagtagtctgatgatagaaatttagtttgtgcactataattatacgctttaaaattatactatattagatattctcttcgtttacagcaagtcttgaaaacatttttcttgcatcaagagttctggtgatctgcaccaaatatattagtaaatttctcgtgcaggcgctttaatttgtggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="117147" stop="118163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117447" g_stop="117470" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117471" i_stop="117598" i_length="128">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117599" g_stop="117860" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="286" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="287" polyA_stop="304"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E218285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117447" e_stop="117470"/>
          <exon e_start="117599" e_stop="117860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTATTGGTGGTGTTTTCACGGTCAGTCTCTCCTACTTGCCTCTCCTGTTGTTTCACACCGTCATTCCCTGCTAACAACTTTCTCTGGGCTTTCATTTGTGTCATCTTTATTGAAACTTCCCTATATTCGTTCTTTTTGGGTGGCATAGGTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTCGTTTACAGCAAGTCTTGAAAACATTTTTCTTGCATCAAGAGTTCTGGTGATCTGCACCAAATATATTAGTAAATTTCTCGTGCAGGCGCTTTAATTTGTGGA</genome_strand>
        <mrna_strand>GCTATTATTGGTGGTGTTTTCACG................................................................................................................................GTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTCGTTTACAGCAAGTCTTGAAAACATTTTTCTTGCATCAAGAGTTCTGGTGATCTGCACCAAATATATTAGTAAATTTCTCGTGCAGGCGCTTTAATTTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543653" ref_strand="+" ref_description="SGN-E543653 [TUS-65-J8](-)">
      <seq>aaggcagattttgacaattgcaaccctgcttctcccattgagaagtccagtgatggaccgaggggggttaagtttaacccctctggggcatactttttcattaggggggttcatgacaactgtgtcaagaatgaaaagttgcctcttgtagtcatggctgatagaagtcccaacaaccaaacaggtttttttcctcctccatccccatcagtagaggaagttcctccgtttccggccccgtttggggagggggccccatcccccccttttgactcaggggagaccaaccaaaccccagctccctttcaagaatcatttcctccgaaaaatggtgctttgtcgaccgttatgagctttgttggctttgctgcagctcttgttggttcatccaaactgttggggttttgataaaagagaggattgacttgtttgtatttgttttgttttgattgttttcattttttgggttttgggtttcaagattttcctactttgttctcagtgaatgtagctgagagtaaaagggggtattgatttgtattggttatatgggatgaaaaataaataaactaaatgtttgtgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="120378" stop="119191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120078" g_stop="119496" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="637"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E543653" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120078" e_stop="119496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAGATTTTGACAATTGCAACACTGCTTCTCCCATTGAGAAGTACAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTGCATACTTCTTCATTAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGTTGCATCTTGTAGTCATGGCTGATAGAAGTCACAACAACCAAACAGCTTCTTCTCCTCCTCCATCCCCATCAGTAGACGAAGTTCCTCCGTCTCCGGCCCCGTCTGGTGAGGAGGCACCATCACCACCATCTGACTCAGGTGAGACCAACCAAACACCAGCTCCCTCTCAAGAATCATCTCCTCCGAAGAATGGTGCTTCGTCGACCGTTATGAGCTTTGTTGGCTCTGCTGCAGCTCTTGTTGGTTCATCCATACTGTTGGGGTTCTGATAAAAGAGATGATTGACTTGTTTGTATTTGTTTTGTTTTGATTGTTTTCATTTTTTGGGTTTTGTGTTTCATGATTTTCCTACTTTGTTCTCAGTGAATGTAGCTGAGAGTAAAAGGGTGTATTGATTTGTATTGGTTATATGTGATGAAAAATAAATAAACTAAATGTTTGTGT</genome_strand>
        <mrna_strand>AAGGCAGATTTTGACAATTGCAACCCTGCTTCTCCCATTGAGAAGTCCAGTGATGGACCGAGGGGGGTTAAGTTTAACCCCTCTGGGGCATACTTTTTCATTAGGGGGGTTCATGACAACTGTGTCAAGAATGAAAAGTTGCCTCTTGTAGTCATGGCTGATAGAAGTCCCAACAACCAAACAGGTTTTTTTCCTCCTCCATCCCCATCAGTAGAGGAAGTTCCTCCGTTTCCGGCCCCGTTTGGGGAGGGGGCCCCATCCCCCCCTTTTGACTCAGGGGAGACCAACCAAACCCCAGCTCCCTTTCAAGAATCATTTCCTCCGAAAAATGGTGCTTTGTCGACCGTTATGAGCTTTGTTGGCTTTGCTGCAGCTCTTGTTGGTTCATCCAAACTGTTGGGGTTTTGATAAAAGAGAGGATTGACTTGTTTGTATTTGTTTTGTTTTGATTGTTTTCATTTTTTGGGTTTTGGGTTTCAAGATTTTCCTACTTTGTTCTCAGTGAATGTAGCTGAGAGTAAAAGGGGGTATTGATTTGTATTGGTTATATGGGATGAAAAATAAATAAACTAAATGTTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618511" ref_strand="+" ref_description="SGN-E618511 [69190]">
      <seq>ttttattttattttttgtgttctttattttattttttcaatggctcaaataacaagttcaagatcaaatagaaaagtttttatattttgggcttggtcaatattttgatgttgttacaaaatgccaattgttatgagtttaaaattggaggctctggagattggagtgtccctatggatgccaatgctaataattacaatcaatgggctgagagcagtagattccaaattggtgacactttatcttttcactactctgctgataaagactcagtgcttcttgtaaacaaggcagattttgacaattgtaacactgcttctcctattgagaagtatagtgatggacagagtgtggttaagtttaaccactctggtccatactacttcatcagtggtgttcatgacaactgtgtcaagaatgaaaagttgtaccttgtagtcatggctgatagaagtcaccacaaccaaacagcttcttctcctcctccttctccatcagtagatgaagttcctccgtctccggctccttctggtgaggaggcaccatcaccaccatctgactcaggtgagaccaagccaactccagctccttctcaagaatcatcacctccttctcctcctaagaatggtgcttcgtcgatcgtcatgagctttattggctctgctgcagctttagttggttcatctatactgttgggattctgataaagagttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="121173" stop="119357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120878" g_stop="120630" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120629" i_stop="120123" i_length="507">
            <donor d_prob="0.799" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120122" g_stop="119657" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="717" r_length="474" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E618511" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120878" e_stop="120630"/>
          <exon e_start="120122" e_stop="119657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTTGTCTTCATTATTTTATTTTATTTTATTTTTTCCCCAATGGCTCAAATAACAAGTTCAAGATCAAATACAAAAGTTTTTTATTTTTTGGGCTTGTTCAATATTTTGTTGATGTTACAAAATGCCAACTGTTATGAGTTTAAAGTTGGAGGCTCTGGAGATTGGAGTGTCCCTATGGATGCCAATGCTAATAATTACAATCAATGGGCTGAAAGGAGTAGATTCCAAATTGGTGACACTTTATGTAAGTTTTATTATATATTCATTTCGATTTTCACCTTTACATTAGTCATAAAATAAACAGTAAATCTGATCGACTATCTGTGAAAAGATCACATATTTGTTTAAGGAGTGCCTTTTATTATCGTTCTATTTTCAAAATTGATCTCTATGAGTTAGGCCCGTTTGGATTGAGTTATTTTTATTATTTTAGCTTTAAAAAAGTATTTATAAGCACTTTTTAACTTTACTCAAACACTTCAAAACTGCTTAAAAGCTATTTTAATTTAAAAGCACCTAAAATAAGTCGATCCAAATGAAAACTCACTATACTTTTAGAAGTTCCTTTTTATATACACGTCTATCTTTCATATCAAAAATATTGAGTTCGATTAAACTTGTATAGTACTAACTACTAAGGCTATATTCTCTTATTCGTTCAGAATTCACTAACTCTAGATCATGGATTCACCTCTAGACAATGTACAAGTTTGATTCTTAATTCTAATACACCTTTTGTTGGCCTTGGCAGCTTTTAGCTACTCTGCTGATAAAGACTCAGTGCTTCTTGTAAACAAGGCAGATTTTGACAATTGCAACACTGCTTCTCCCATTGAGAAGTACAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTGCATACTTCTTCATTAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGTTGCATCTTGTAGTCATGGCTGATAGAAGTCACAACAACCAAACAGCTTCTTCTCCTCCTCCATCCCCATCAGTAGACGAAGTTCCTCCGTCTCCGGCCCCGTCTGGTGAGGAGGCACCATCACCACCATCTGACTCAGGTGAGACCAACCAAACACCAGCTCCCTCTCAAG-A--ATCA------TCTCCTCCGAAGAATGGTGCTTCGTCGACCGTTATGAGCTTTGTTGGCTCTGCTGCAGCTCTTGTTGGTTCATCCATACTGTTGGGGTTCTGATAAAAGAGATGATT</genome_strand>
        <mrna_strand>TTTTATTT-TATTTTTTGTGTT-CTTTATTTTATTTTTT--C-AATGGCTCAAATAACAAGTTCAAGATCAAATAGAAAAGTTTTT-ATATTTTGGGCTTGGTCAATATTTTGATGTTGTTACAAAATGCCAATTGTTATGAGTTTAAAATTGGAGGCTCTGGAGATTGGAGTGTCCCTATGGATGCCAATGCTAATAATTACAATCAATGGGCTGAGAGCAGTAGATTCCAAATTGGTGACACTTTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCACTACTCTGCTGATAAAGACTCAGTGCTTCTTGTAAACAAGGCAGATTTTGACAATTGTAACACTGCTTCTCCTATTGAGAAGTATAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTCCATACTACTTCATCAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGTTGTACCTTGTAGTCATGGCTGATAGAAGTCACCACAACCAAACAGCTTCTTCTCCTCCTCCTTCTCCATCAGTAGATGAAGTTCCTCCGTCTCCGGCTCCTTCTGGTGAGGAGGCACCATCACCACCATCTGACTCAGGTGAGACCAAGCCAACTCCAGCTCCTTCTCAAGAATCATCACCTCCTTCTCCTCCTAAGAATGGTGCTTCGTCGATCGTCATGAGCTTTATTGGCTCTGCTGCAGCTTTAGTTGGTTCATCTATACTGTTGGGATTCTGAT-AAAGAGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543654" ref_strand="+" ref_description="SGN-E543654 [TUS-65-J8]">
      <seq>catctaacatttatttaattttattctttgtcttcattattttattttattttatttttttccccaatggctcaaataacaagttcaagatcaaatacaaaagttttttattttttgggcttgttcaatattttgttgatgttacaaaatgccaactgttatgagtttaaagttggaggctctggagattggagtgtccctatggatgccaatgctaataattacaatcaatgggctgaaaggagtagattccaaattggtgacactttatcttttagctactctgctgataaagactcagtgcttcttgtaaacaaggcagattttgacaattgcaacactgcttctcccattgagaagtacagtgatggacagagtgtggttaagtttaaccactctggtgcatacttcttcattagtggtgttcatgacaactgtgtcaagaatgaaaagttgcatcttgtagtcatggctgatagaagtcacaacaaccaaacagcttcttctcctcctccatccccatcagtagacgaagttcctccgtctccggccccgtctggtgaggaggcaccatcaccaccatctgactcaggtgagaccaaccaaacaccagctccctctcaagaatcatctcctccgaagaatggtgcttcgtcgaccgttatgagctttgttggctctgctgcagctcttgttggttcatccatactgttggggttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="121199" stop="119372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120899" g_stop="120630" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120629" i_stop="120123" i_length="507">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120122" g_stop="119672" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="722" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E543654" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120899" e_stop="120630"/>
          <exon e_start="120122" e_stop="119672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTAACATTTATTTAATTTTATTCTTTGTCTTCATTATTTTATTTTATTTTA-TTTTTTCCCCAATGGCTCAAATAACAAGTTCAAGATCAAATACAAAAGTTTTTTATTTTTTGGGCTTGTTCAATATTTTGTTGATGTTACAAAATGCCAACTGTTATGAGTTTAAAGTTGGAGGCTCTGGAGATTGGAGTGTCCCTATGGATGCCAATGCTAATAATTACAATCAATGGGCTGAAAGGAGTAGATTCCAAATTGGTGACACTTTATGTAAGTTTTATTATATATTCATTTCGATTTTCACCTTTACATTAGTCATAAAATAAACAGTAAATCTGATCGACTATCTGTGAAAAGATCACATATTTGTTTAAGGAGTGCCTTTTATTATCGTTCTATTTTCAAAATTGATCTCTATGAGTTAGGCCCGTTTGGATTGAGTTATTTTTATTATTTTAGCTTTAAAAAAGTATTTATAAGCACTTTTTAACTTTACTCAAACACTTCAAAACTGCTTAAAAGCTATTTTAATTTAAAAGCACCTAAAATAAGTCGATCCAAATGAAAACTCACTATACTTTTAGAAGTTCCTTTTTATATACACGTCTATCTTTCATATCAAAAATATTGAGTTCGATTAAACTTGTATAGTACTAACTACTAAGGCTATATTCTCTTATTCGTTCAGAATTCACTAACTCTAGATCATGGATTCACCTCTAGACAATGTACAAGTTTGATTCTTAATTCTAATACACCTTTTGTTGGCCTTGGCAGCTTTTAGCTACTCTGCTGATAAAGACTCAGTGCTTCTTGTAAACAAGGCAGATTTTGACAATTGCAACACTGCTTCTCCCATTGAGAAGTACAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTGCATACTTCTTCATTAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGTTGCATCTTGTAGTCATGGCTGATAGAAGTCACAACAACCAAACAGCTTCTTCTCCTCCTCCATCCCCATCAGTAGACGAAGTTCCTCCGTCTCCGGCCCCGTCTGGTGAGGAGGCACCATCACCACCATCTGACTCAGGTGAGACCAACCAAACACCAGCTCCCTCTCAAGAATCATCTCCTCCGAAGAATGGTGCTTCGTCGACCGTTATGAGCTTTGTTGGCTCTGCTGCAGCTCTTGTTGGTTCATCCATACTGTTGGGGTTCTG</genome_strand>
        <mrna_strand>CATCTAACATTTATTTAATTTTATTCTTTGTCTTCATTATTTTATTTTATTTTATTTTTTTCCCCAATGGCTCAAATAACAAGTTCAAGATCAAATACAAAAGTTTTTTATTTTTTGGGCTTGTTCAATATTTTGTTGATGTTACAAAATGCCAACTGTTATGAGTTTAAAGTTGGAGGCTCTGGAGATTGGAGTGTCCCTATGGATGCCAATGCTAATAATTACAATCAATGGGCTGAAAGGAGTAGATTCCAAATTGGTGACACTTTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTAGCTACTCTGCTGATAAAGACTCAGTGCTTCTTGTAAACAAGGCAGATTTTGACAATTGCAACACTGCTTCTCCCATTGAGAAGTACAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTGCATACTTCTTCATTAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGTTGCATCTTGTAGTCATGGCTGATAGAAGTCACAACAACCAAACAGCTTCTTCTCCTCCTCCATCCCCATCAGTAGACGAAGTTCCTCCGTCTCCGGCCCCGTCTGGTGAGGAGGCACCATCACCACCATCTGACTCAGGTGAGACCAACCAAACACCAGCTCCCTCTCAAGAATCATCTCCTCCGAAGAATGGTGCTTCGTCGACCGTTATGAGCTTTGTTGGCTCTGCTGCAGCTCTTGTTGGTTCATCCATACTGTTGGGGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574849" ref_strand="+" ref_description="SGN-E574849 [34381]">
      <seq>catctaacatttattttattttatttcttgtgtactttattttatttttccaatggctcaaataacaagttcaagatcaaatagaaaagttttttatattttgggcttggtcaatattttgatgttgttacaaaatgccaattgttatgagtttaaaattggaggctctggagattggagtgtccctatggatgccaatgctaataattacaatcaatgggctgagaggaatagattccaaattggtgacactttatcttttcactactctgctgataaagactcagtgcttcttgtaaacaaggcagattttgacaattgcaacactgcttctcctattgagaagtatagtgatggacagagtgtggttaagtttaaccactctggtccatactacttcattagtggtgttcatgacaactgtgtcaagaatgaaaaggtgcaccttgtggtcatggctgatagaagtcaccacaaccaaacagcttcttctccccctccttccccatcagtagatgaagttcctccgtctccggccccgtctggtgaggaggcaccatcaccaacatctgactcaggtgagaacaaccaaattccaggctccttctcaagaatcatcacctcctttctctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="121173" stop="119456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120892" g_stop="120630" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120629" i_stop="120123" i_length="507">
            <donor d_prob="0.799" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120122" g_stop="119747" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="634" r_length="377" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E574849" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120892" e_stop="120630"/>
          <exon e_start="120122" e_stop="119747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATTTAATTTTATTCTTTGTCTTCATTATTTTATTTTATTTTATTTTTTCCCCAATGGCTCAAATAACAAGTTCAAGATCAAATACAAAAGTTTTTTATTTTTTGGGCTTGTTCAATATTTTGTTGATGTTACAAAATGCCAACTGTTATGAGTTTAAAGTTGGAGGCTCTGGAGATTGGAGTGTCCCTATGGATGCCAATGCTAATAATTACAATCAATGGGCTGAAAGGAGTAGATTCCAAATTGGTGACACTTTATGTAAGTTTTATTATATATTCATTTCGATTTTCACCTTTACATTAGTCATAAAATAAACAGTAAATCTGATCGACTATCTGTGAAAAGATCACATATTTGTTTAAGGAGTGCCTTTTATTATCGTTCTATTTTCAAAATTGATCTCTATGAGTTAGGCCCGTTTGGATTGAGTTATTTTTATTATTTTAGCTTTAAAAAAGTATTTATAAGCACTTTTTAACTTTACTCAAACACTTCAAAACTGCTTAAAAGCTATTTTAATTTAAAAGCACCTAAAATAAGTCGATCCAAATGAAAACTCACTATACTTTTAGAAGTTCCTTTTTATATACACGTCTATCTTTCATATCAAAAATATTGAGTTCGATTAAACTTGTATAGTACTAACTACTAAGGCTATATTCTCTTATTCGTTCAGAATTCACTAACTCTAGATCATGGATTCACCTCTAGACAATGTACAAGTTTGATTCTTAATTCTAATACACCTTTTGTTGGCCTTGGCAGCTTTTAGCTACTCTGCTGATAAAGACTCAGTGCTTCTTGTAAACAAGGCAGATTTTGACAATTGCAACACTGCTTCTCCCATTGAGAAGTACAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTGCATACTTCTTCATTAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGTTGCATCTTGTAGTCATGGCTGATAGAAGTCACAACAACCAAACAGCTTCTTCTCCTCCTCCATCCCCATCAGTAGACGAAGTTCCTCCGTCTCCGGCCCCGTCTGGTGAGGAGGCACCATCACCACCATCTGACTCAGGTGAGACCAACCAAACACCA-GCTCCCTCTCAAGAATCATCTCCTCCGAAGAATGG</genome_strand>
        <mrna_strand>CATCTA-ACATTTATTTTATTTTATTTC-TT-GTGTACTTTATTTTATTTTT---CCAATGGCTCAAATAACAAGTTCAAGATCAAATAGAAAAGTTTTTTATATTTTGGGCTTGGTCAATATTTTGATGTTGTTACAAAATGCCAATTGTTATGAGTTTAAAATTGGAGGCTCTGGAGATTGGAGTGTCCCTATGGATGCCAATGCTAATAATTACAATCAATGGGCTGAGAGGAATAGATTCCAAATTGGTGACACTTTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCACTACTCTGCTGATAAAGACTCAGTGCTTCTTGTAAACAAGGCAGATTTTGACAATTGCAACACTGCTTCTCCTATTGAGAAGTATAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTCCATACTACTTCATTAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGGTGCACCTTGTGGTCATGGCTGATAGAAGTCACCACAACCAAACAGCTTCTTCTCCCCCTCCTTCCCCATCAGTAGATGAAGTTCCTCCGTCTCCGGCCCCGTCTGGTGAGGAGGCACCATCACCAACATCTGACTCAGGTGAGAACAACCAAATTCCAGGCTCCTTCTCAAGAATCATCACCTCCTTTCTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304625" ref_strand="+" ref_description="SGN-E304625 [cLEX-11-N18]">
      <seq>atctaacatttatttaattttattctttgtcttcattattttattttattttatttttttccccaatggctcaaataacaagttcaagatcaaatacaaaagttttttattttttgggcttgttcaatattttgttgatgttacaaaatgccaactgttatgagtttaaagttggaggctctggagattggagtgtccctatggatgccaatgctaataattacaatcaatgggctgaaaggagtagattccaaattggtgacactttatcttttagctactctgctgataaagactcagtgcttcttgtaaacaaggcagattttgacaattgcaacactgcttctcccattgagaagtacagtgatggacagagtgtggttaagtttaaccactctggtgcatacttcttcattagtggtgttcatgacaactgtgtcaagaatgaaaagttgcatcttgtagtcatggctgatagaagtcacaacaaccaaacagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="121198" stop="119592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120898" g_stop="120630" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120629" i_stop="120123" i_length="507">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120122" g_stop="119892" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="501" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E304625" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120898" e_stop="120630"/>
          <exon e_start="120122" e_stop="119892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAACATTTATTTAATTTTATTCTTTGTCTTCATTATTTTATTTTATTTTA-TTTTTTCCCCAATGGCTCAAATAACAAGTTCAAGATCAAATACAAAAGTTTTTTATTTTTTGGGCTTGTTCAATATTTTGTTGATGTTACAAAATGCCAACTGTTATGAGTTTAAAGTTGGAGGCTCTGGAGATTGGAGTGTCCCTATGGATGCCAATGCTAATAATTACAATCAATGGGCTGAAAGGAGTAGATTCCAAATTGGTGACACTTTATGTAAGTTTTATTATATATTCATTTCGATTTTCACCTTTACATTAGTCATAAAATAAACAGTAAATCTGATCGACTATCTGTGAAAAGATCACATATTTGTTTAAGGAGTGCCTTTTATTATCGTTCTATTTTCAAAATTGATCTCTATGAGTTAGGCCCGTTTGGATTGAGTTATTTTTATTATTTTAGCTTTAAAAAAGTATTTATAAGCACTTTTTAACTTTACTCAAACACTTCAAAACTGCTTAAAAGCTATTTTAATTTAAAAGCACCTAAAATAAGTCGATCCAAATGAAAACTCACTATACTTTTAGAAGTTCCTTTTTATATACACGTCTATCTTTCATATCAAAAATATTGAGTTCGATTAAACTTGTATAGTACTAACTACTAAGGCTATATTCTCTTATTCGTTCAGAATTCACTAACTCTAGATCATGGATTCACCTCTAGACAATGTACAAGTTTGATTCTTAATTCTAATACACCTTTTGTTGGCCTTGGCAGCTTTTAGCTACTCTGCTGATAAAGACTCAGTGCTTCTTGTAAACAAGGCAGATTTTGACAATTGCAACACTGCTTCTCCCATTGAGAAGTACAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTGCATACTTCTTCATTAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGTTGCATCTTGTAGTCATGGCTGATAGAAGTCACAACAACCAAACAGCTT</genome_strand>
        <mrna_strand>ATCTAACATTTATTTAATTTTATTCTTTGTCTTCATTATTTTATTTTATTTTATTTTTTTCCCCAATGGCTCAAATAACAAGTTCAAGATCAAATACAAAAGTTTTTTATTTTTTGGGCTTGTTCAATATTTTGTTGATGTTACAAAATGCCAACTGTTATGAGTTTAAAGTTGGAGGCTCTGGAGATTGGAGTGTCCCTATGGATGCCAATGCTAATAATTACAATCAATGGGCTGAAAGGAGTAGATTCCAAATTGGTGACACTTTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTAGCTACTCTGCTGATAAAGACTCAGTGCTTCTTGTAAACAAGGCAGATTTTGACAATTGCAACACTGCTTCTCCCATTGAGAAGTACAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTGCATACTTCTTCATTAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGTTGCATCTTGTAGTCATGGCTGATAGAAGTCACAACAACCAAACAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338544" ref_strand="+" ref_description="SGN-E338544 [cTOE-15-C19]">
      <seq>ttttctatttcaattttcatctaacatttatttaattttattctttgtcttcattattttattttattttattttttccccaatggctcaaataacaagttcaagatcaaatacaaaagttttttattttttgggcttgttcaatattttgttgatgttacaaaatgccaactgttatgagtttaaagttggaggctctggagattggagtgtccctatggatgccaatgctaataattacaatcaatgggctgaaaggagtagattccaaattggtgacactttatcttttagctactctgctgataaagactcagtgcttcttgtaaacaaggcagattttgacaattgcaacactgcttctcccattgagaagtacagtgatggacagagtgtggttaagtttaaccactctggtgcatacttcttcattagtggtgttcatgacaactgtgtcaagaatgaaaagttgcatcttgtagtcatggctgatagaagtcacaacaaccaaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="121216" stop="119594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120916" g_stop="120630" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120629" i_stop="120123" i_length="507">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120122" g_stop="119894" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="516" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E338544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120916" e_stop="120630"/>
          <exon e_start="120122" e_stop="119894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTATTTCAATTTTCATCTAACATTTATTTAATTTTATTCTTTGTCTTCATTATTTTATTTTATTTTATTTTTTCCCCAATGGCTCAAATAACAAGTTCAAGATCAAATACAAAAGTTTTTTATTTTTTGGGCTTGTTCAATATTTTGTTGATGTTACAAAATGCCAACTGTTATGAGTTTAAAGTTGGAGGCTCTGGAGATTGGAGTGTCCCTATGGATGCCAATGCTAATAATTACAATCAATGGGCTGAAAGGAGTAGATTCCAAATTGGTGACACTTTATGTAAGTTTTATTATATATTCATTTCGATTTTCACCTTTACATTAGTCATAAAATAAACAGTAAATCTGATCGACTATCTGTGAAAAGATCACATATTTGTTTAAGGAGTGCCTTTTATTATCGTTCTATTTTCAAAATTGATCTCTATGAGTTAGGCCCGTTTGGATTGAGTTATTTTTATTATTTTAGCTTTAAAAAAGTATTTATAAGCACTTTTTAACTTTACTCAAACACTTCAAAACTGCTTAAAAGCTATTTTAATTTAAAAGCACCTAAAATAAGTCGATCCAAATGAAAACTCACTATACTTTTAGAAGTTCCTTTTTATATACACGTCTATCTTTCATATCAAAAATATTGAGTTCGATTAAACTTGTATAGTACTAACTACTAAGGCTATATTCTCTTATTCGTTCAGAATTCACTAACTCTAGATCATGGATTCACCTCTAGACAATGTACAAGTTTGATTCTTAATTCTAATACACCTTTTGTTGGCCTTGGCAGCTTTTAGCTACTCTGCTGATAAAGACTCAGTGCTTCTTGTAAACAAGGCAGATTTTGACAATTGCAACACTGCTTCTCCCATTGAGAAGTACAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTGCATACTTCTTCATTAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGTTGCATCTTGTAGTCATGGCTGATAGAAGTCACAACAACCAAACAGC</genome_strand>
        <mrna_strand>TTTTCTATTTCAATTTTCATCTAACATTTATTTAATTTTATTCTTTGTCTTCATTATTTTATTTTATTTTATTTTTTCCCCAATGGCTCAAATAACAAGTTCAAGATCAAATACAAAAGTTTTTTATTTTTTGGGCTTGTTCAATATTTTGTTGATGTTACAAAATGCCAACTGTTATGAGTTTAAAGTTGGAGGCTCTGGAGATTGGAGTGTCCCTATGGATGCCAATGCTAATAATTACAATCAATGGGCTGAAAGGAGTAGATTCCAAATTGGTGACACTTTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTAGCTACTCTGCTGATAAAGACTCAGTGCTTCTTGTAAACAAGGCAGATTTTGACAATTGCAACACTGCTTCTCCCATTGAGAAGTACAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTGCATACTTCTTCATTAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGTTGCATCTTGTAGTCATGGCTGATAGAAGTCACAACAACCAAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546426" ref_strand="+" ref_description="SGN-E546426 [TUS-69-M14]">
      <seq>cctcgttagctctgactgtgaaaatgtcaccgccagaatactcaaaactgtaaaacaccattcttacccaaaaaaagaaaaagaaagtttagctaagtatttggcaattaggaaaaagatcaaatttttatgttgattatggtgtgtttcttgaatttctgtcaaatgggtagctagaaaaacaagttttatgatctggggttgtctcatttctgtttttcttgttgaaaatctgatctgggttcttgagctgcagctgttgggtttccaagattgttttttttttgtttggtttgaggagttttcaagaatgtggagggaccctggagctcctgctgattctttctaccaggttcgccctgaatgtacaaatattccaaaaacaagatttagaatcaaggctgggaaaaccttaagtgcaaggaaatggcgtgctgcatttacatcagaaggttatcttgatattggcaaaacactgagtcgaatttatcgtggggggattcatccatcaattagaggtgaagtttgggaatttttattggggttgttatgatccaaagagcacatttgaagaacgagagtacatacgacagcggaggagggtccagtatgctgtactgaaagaagaatgtcacgcaatgtttcccatgattggaagtggtagttttattactgcacctgtnattactgaaaatggtgaccctatagtagatcctattactctcccagaggcacaagcagcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="122054" stop="125494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122354" g_stop="122754" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122755" i_stop="124131" i_length="1377">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124132" g_stop="124227" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="496" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124228" i_stop="124439" i_length="212">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.039" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124440" g_stop="124543" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="601" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124544" i_stop="125048" i_length="505">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125049" g_stop="125194" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="747" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E546426" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122354" e_stop="122754"/>
          <exon e_start="124132" e_stop="124227"/>
          <exon e_start="124440" e_stop="124543"/>
          <exon e_start="125049" e_stop="125194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGTTAGCTCTGACTGTGAAATTGTCACCACCAGAATACTCAAAACTGTAAAACACCATTCTTACCCAAAAAAAGAAAAAGAAAGTTTAGCTAAGTATTTGGCAATTAGGAAAAAGATCAAATTTTTATGTTGATTATAATGTGTTTCTTGAATTTCTGTCAAATGGGTAGCTAGAAAAACAAGTTTTATGATCTGGGGTTGTCTCATTTTTGTTTTTCTTGTTGAAAATCTGATCTGGGTTCTTGAGCTGCAGCTGTTGGGTTTCCAAGATTGTTTTTTTTTTTGTTTGGTTTGAGGAGTTTTCAAGAATGTGGAGGGACCCTGGAGCTCCTGCTGATTCTTTCTACCAGGTTCGCCCTGAATGTACAAATGTTCCAAAAACAAGATTTAGAATCAAGGTTAGTTTTTTTAGTTTTTGATGCTAGGGGCATTGTATTACATTTGTGTTTTTTTGAATAGATTTTTGGTATGAGCTTGTATGAGAAGTTGGGATTCTAACTTGTTTGGGATTGAGGCGTAGTAGTAGTTGTTGTTGTTGTATGTTAGAAGCTTTTGTAGGACAACTAGTAATGTGCATGAATGAGGTAATCTATTGTGTTATGTTGTGGGATGTATTGAGATGATTGAAAAGATCATGTGTTTTGTTGAGATGGAAGATGTTTATCTGGCAGACCTTAGACTTGGGTTCTAGATGGGGATCATCAACTGCAATTAGCATCAGCCAAATCAAATGATCTATGGCTGCCAATGTCTCTCGTGGTAAAAAGAATGTAGAACCAAATATCTATTGGAAGTAATAAAGACTTCACAGTAGAACATAAATGTTTTGCTTACAGTTTGCTCTTCAGAATTTGATAGTGGCATAAAGCCTTATTGTTTGAAACATTTTTCGGTTTGCATCCCCATTTTAGTAGTTGGGACTGGTACTTGGTCCAAGATTACCTGGTTTTAAGTTGGGGAAAGGGGAATGTTCACCTGAATTTCCTTTTACATGTTTCATAAGCTGTACTTGCAGATTAAACTACTCTTCCCGTTCCAATTTAAGTGTCTTAGTTTGATTTAGTCTTAAATTAAAGATTTGTATAGTCCTTAAAAAAATCATGTGGTTTTGAACTTGTCGTGTAGAATATTGGAATTGAAAAACTTGCTAATATAGAAAGAGACTCTTTTTGGAACAAAACCAAGTGGGAAGTAAGACACTCAAATTGGGATAGAGGGAGTATATGTTTCCTGTTCCATCAATCTGTACAAACAATCTTTTACTCTTAGACTCTTCTCACTCTTTAACCTTGCCAATCAGTGAATTCAATTGGATGACATTTCCGGGTTTTAAACTTATGAGGTTGGCTGCTGTTGTGCAACATATAATGAGTGAATCTGCATGATGATTAGCATATATCATTTGATCCCTATTTGTTCCATAACGCGTGTGGCACATGTGGTGTGAACTAGTTTGCATTATATCTTAAGTCGGAACTGTGGGTATTTAGTGTAGAGTATATGTAAATCTTCAGTTGTGTCACATTAGTTGTCAGTAAGATGGATGAGCATTTCAAAAGGTCCCTCTTTTTTCATGAAAAGAACTGGATTTTTCGTTTATCTGCTTACCATCTCAAATAAGAATTCGAAAAGACTCTCTACATTGTCAATCATATAATGACGTTCAGAAGTAGTTCTCACATTTCTCTTGAATAAGTTGAACTCCTTACTAGATATCCACCATCTCCTGTATTTGTGTTGCCGGATATGTCTTATCTATTGATTTACTTATTCAGGCTGGGAAAACCTTAAGTGCAAGGAAATGGCGTGCTGCATTTACATCAGAAGGTTATCTTGACATTGGCAAAACACTGAGTCGAATTTATCGTGGGGTAAGTTTGACTTATTGATGTCAATGTTTTTGCAGGATTACATGATGTATGATCCTGAAGCTTCTATTCTACAGTTTTATTATACTAGCTGATTTGTTTGAACTCTTTTCAGTTTTGTTTGACTAATTCCATGAATATGCATTACTCATAAATTCCTGAAAAGATGATTAGCATAGAAGTCTAGTAACCATCAAATTTCTATGACATTATAGGGGATTCATCCATCAATTAGAGGTGAAGTTTGGGAATTTTTATT-GGGTTGTTATGATCCAAAGAGCACATTTGAAGAACGAGAGCAGATACGACAACGGAGGAGGTAATTTACATTCTTTATTGCTAAGTTGGAAAACATATATAGCACTTATTTTCCCATTTTACATCACTTAATAATTGCAAGTTCATCACTTGATTTCAATAGGTAGCATGGTATTTTATTTATACTGTTGGAGGTGACCTGAAAATCGTTTTCAGCTGAAAACGGCTCCATATAGGATCATCAGGTGACAGTGTTAAAAAACCAGTAGCTCATCAAAATGGTTTAAACTCTGTACTTAGACGTTACCAAATTTGACAAATTCATTACAGTTAGGAGATTGTTATTCATCATAAGAATACACATTGCTACCTCATCACTACTAATGGCAAGTGAAATGTTTGGGAATGAGGCTTAGTTGATCATGGTTCATCGATATAATTTGGCTCAAATTATCTTCACATGTAAAATGAGGATAATTTACCGTTCCTGAGTATAAACTAAACACTGATCCATAAGCAGTTTCCATACCTTATTGTTGACCTGGATTTCTGTTGTGTTCGCTCAGGGTCCAGTATGCTGTACTGAAAGAAGAATGTCACGCAATGTTTCCCATGATTGGAAGTGGTAGTTTTATTACTGCACCTGTAATTACTGAAAATGGTGACCCTATAGTAGATCCTATTACTCTCCAAGAGGCACAAGCAGCAAAAG</genome_strand>
        <mrna_strand>CCTCGTTAGCTCTGACTGTGAAAATGTCACCGCCAGAATACTCAAAACTGTAAAACACCATTCTTACCCAAAAAAAGAAAAAGAAAGTTTAGCTAAGTATTTGGCAATTAGGAAAAAGATCAAATTTTTATGTTGATTATGGTGTGTTTCTTGAATTTCTGTCAAATGGGTAGCTAGAAAAACAAGTTTTATGATCTGGGGTTGTCTCATTTCTGTTTTTCTTGTTGAAAATCTGATCTGGGTTCTTGAGCTGCAGCTGTTGGGTTTCCAAGATTG-TTTTTTTTTTGTTTGGTTTGAGGAGTTTTCAAGAATGTGGAGGGACCCTGGAGCTCCTGCTGATTCTTTCTACCAGGTTCGCCCTGAATGTACAAATATTCCAAAAACAAGATTTAGAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGAAAACCTTAAGTGCAAGGAAATGGCGTGCTGCATTTACATCAGAAGGTTATCTTGATATTGGCAAAACACTGAGTCGAATTTATCGTGGG....................................................................................................................................................................................................................GGGATTCATCCATCAATTAGAGGTGAAGTTTGGGAATTTTTATTGGGGTTGTTATGATCCAAAGAGCACATTTGAAGAACGAGAGTACATACGACAGCGGAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCAGTATGCTGTACTGAAAGAAGAATGTCACGCAATGTTTCCCATGATTGGAAGTGGTAGTTTTATTACTGCACCTGTNATTACTGAAAATGGTGACCCTATAGTAGATCCTATTACTCTCCCAGAGGCACAAGCAGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358959" ref_strand="+" ref_description="SGN-E358959 [cLHT-24-J9]">
      <seq>ctcgttagctctgactgtgaaaatgtcaccgccagaatactcaaaactgtaaaacaccattcttacccaaaaaaagaaaaagaaagtttagctaagtatttggcaattaggaaaaagatcaaatttttatgttgattatggtgtgtttcttgaatttctgtcaaatgggtagctagaaaaacaagttttatgatctggggttgtctcatttctgtttttcttgttgaaaatctgatctgggttcttgagctgcagctgttgggtttccaagattgttttttttttgtttggtttgaggagttttcaagaatgtggagggaccctggagctcctgctgattctttctaccaggttcgccctgaatgtacaaatattccaaaaacaagatttagaatcaaggctgggaaaaccttaagtgcaaggaaatggcgtgctgcatttacatcagaaggttatcttgatattggcaaaacactgagtcgaatttatcgtggggggattcatccatcaattagaggtgaaatttgggaatttttattgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="122055" stop="124788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122355" g_stop="122754" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122755" i_stop="124131" i_length="1377">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124132" g_stop="124227" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="495" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124228" i_stop="124439" i_length="212">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.039" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124440" g_stop="124488" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="544" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E358959" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122355" e_stop="122754"/>
          <exon e_start="124132" e_stop="124227"/>
          <exon e_start="124440" e_stop="124488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTTAGCTCTGACTGTGAAATTGTCACCACCAGAATACTCAAAACTGTAAAACACCATTCTTACCCAAAAAAAGAAAAAGAAAGTTTAGCTAAGTATTTGGCAATTAGGAAAAAGATCAAATTTTTATGTTGATTATAATGTGTTTCTTGAATTTCTGTCAAATGGGTAGCTAGAAAAACAAGTTTTATGATCTGGGGTTGTCTCATTTTTGTTTTTCTTGTTGAAAATCTGATCTGGGTTCTTGAGCTGCAGCTGTTGGGTTTCCAAGATTGTTTTTTTTTTTGTTTGGTTTGAGGAGTTTTCAAGAATGTGGAGGGACCCTGGAGCTCCTGCTGATTCTTTCTACCAGGTTCGCCCTGAATGTACAAATGTTCCAAAAACAAGATTTAGAATCAAGGTTAGTTTTTTTAGTTTTTGATGCTAGGGGCATTGTATTACATTTGTGTTTTTTTGAATAGATTTTTGGTATGAGCTTGTATGAGAAGTTGGGATTCTAACTTGTTTGGGATTGAGGCGTAGTAGTAGTTGTTGTTGTTGTATGTTAGAAGCTTTTGTAGGACAACTAGTAATGTGCATGAATGAGGTAATCTATTGTGTTATGTTGTGGGATGTATTGAGATGATTGAAAAGATCATGTGTTTTGTTGAGATGGAAGATGTTTATCTGGCAGACCTTAGACTTGGGTTCTAGATGGGGATCATCAACTGCAATTAGCATCAGCCAAATCAAATGATCTATGGCTGCCAATGTCTCTCGTGGTAAAAAGAATGTAGAACCAAATATCTATTGGAAGTAATAAAGACTTCACAGTAGAACATAAATGTTTTGCTTACAGTTTGCTCTTCAGAATTTGATAGTGGCATAAAGCCTTATTGTTTGAAACATTTTTCGGTTTGCATCCCCATTTTAGTAGTTGGGACTGGTACTTGGTCCAAGATTACCTGGTTTTAAGTTGGGGAAAGGGGAATGTTCACCTGAATTTCCTTTTACATGTTTCATAAGCTGTACTTGCAGATTAAACTACTCTTCCCGTTCCAATTTAAGTGTCTTAGTTTGATTTAGTCTTAAATTAAAGATTTGTATAGTCCTTAAAAAAATCATGTGGTTTTGAACTTGTCGTGTAGAATATTGGAATTGAAAAACTTGCTAATATAGAAAGAGACTCTTTTTGGAACAAAACCAAGTGGGAAGTAAGACACTCAAATTGGGATAGAGGGAGTATATGTTTCCTGTTCCATCAATCTGTACAAACAATCTTTTACTCTTAGACTCTTCTCACTCTTTAACCTTGCCAATCAGTGAATTCAATTGGATGACATTTCCGGGTTTTAAACTTATGAGGTTGGCTGCTGTTGTGCAACATATAATGAGTGAATCTGCATGATGATTAGCATATATCATTTGATCCCTATTTGTTCCATAACGCGTGTGGCACATGTGGTGTGAACTAGTTTGCATTATATCTTAAGTCGGAACTGTGGGTATTTAGTGTAGAGTATATGTAAATCTTCAGTTGTGTCACATTAGTTGTCAGTAAGATGGATGAGCATTTCAAAAGGTCCCTCTTTTTTCATGAAAAGAACTGGATTTTTCGTTTATCTGCTTACCATCTCAAATAAGAATTCGAAAAGACTCTCTACATTGTCAATCATATAATGACGTTCAGAAGTAGTTCTCACATTTCTCTTGAATAAGTTGAACTCCTTACTAGATATCCACCATCTCCTGTATTTGTGTTGCCGGATATGTCTTATCTATTGATTTACTTATTCAGGCTGGGAAAACCTTAAGTGCAAGGAAATGGCGTGCTGCATTTACATCAGAAGGTTATCTTGACATTGGCAAAACACTGAGTCGAATTTATCGTGGGGTAAGTTTGACTTATTGATGTCAATGTTTTTGCAGGATTACATGATGTATGATCCTGAAGCTTCTATTCTACAGTTTTATTATACTAGCTGATTTGTTTGAACTCTTTTCAGTTTTGTTTGACTAATTCCATGAATATGCATTACTCATAAATTCCTGAAAAGATGATTAGCATAGAAGTCTAGTAACCATCAAATTTCTATGACATTATAGGGGATTCATCCATCAATTAGAGGTGAAGTTTGGGAATTTTTATTGGGTT</genome_strand>
        <mrna_strand>CTCGTTAGCTCTGACTGTGAAAATGTCACCGCCAGAATACTCAAAACTGTAAAACACCATTCTTACCCAAAAAAAGAAAAAGAAAGTTTAGCTAAGTATTTGGCAATTAGGAAAAAGATCAAATTTTTATGTTGATTATGGTGTGTTTCTTGAATTTCTGTCAAATGGGTAGCTAGAAAAACAAGTTTTATGATCTGGGGTTGTCTCATTTCTGTTTTTCTTGTTGAAAATCTGATCTGGGTTCTTGAGCTGCAGCTGTTGGGTTTCCAAGATTG-TTTTTTTTTTGTTTGGTTTGAGGAGTTTTCAAGAATGTGGAGGGACCCTGGAGCTCCTGCTGATTCTTTCTACCAGGTTCGCCCTGAATGTACAAATATTCCAAAAACAAGATTTAGAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGAAAACCTTAAGTGCAAGGAAATGGCGTGCTGCATTTACATCAGAAGGTTATCTTGATATTGGCAAAACACTGAGTCGAATTTATCGTGGG....................................................................................................................................................................................................................GGGATTCATCCATCAATTAGAGGTGAAATTTGGGAATTTTTATTGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440731" ref_strand="+" ref_description="SGN-E440731 [cSTA-18-N2]">
      <seq>agaaaatgtcaccgcccatacctcaaaactgtaaaacaccctactttccaaaaaaagaaaaaaaaaagtttagccaagccatatgtaaattaggaaaaagatcacttttttatgttgatttttgtgtgtttcttgaatttctgtcaaatgggtagctaggaaaacaagttttatgatctggggttgtcccatttttgtttttcttgttgaaaatctgatctgggttcttgagctgcagctgttgggtttcaaagatttgttttttttttgtttggtttgaggagttttcaagaatgtggagggaccctggagctcctgctgattctttctaccaggttcgccctgaatgtacaaatgttcccaaaacaagattcagaatcaaggctgggaaaaccttaagtgcaaggaaatggcgtgctgcatttacatcagaaggttatcttgacattggcaaaacactgagtcgagtttatcgtggggggattcatccatcaatgagaggtgaagtttgggaatttttattgggttgttatgatccaaagagcacatttgaagaacgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="122091" stop="124823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122372" g_stop="122754" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122755" i_stop="124131" i_length="1377">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124132" g_stop="124227" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="479" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124228" i_stop="124439" i_length="212">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.039" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124440" g_stop="124523" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="563" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E440731" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122372" e_stop="122754"/>
          <exon e_start="124132" e_stop="124227"/>
          <exon e_start="124440" e_stop="124523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGTCACCACCAGAATACTCAAAACTGTAAAACACCATTCTTACCCAAAAAAAGAAAAAGAAAGTTTAGCTAAG-TATTTGGCAATTAGGAAAAAGATCAAATTTTTATGTTGATTATAATGTGTTTCTTGAATTTCTGTCAAATGGGTAGCTAGAAAAACAAGTTTTATGATCTGGGGTTGTCTCATTTTTGTTTTTCTTGTTGAAAATCTGATCTGGGTTCTTGAGCTGCAGCTGTTGGGTTTCCAAGATTGTTTTTTTTTTTGTTTGGTTTGAGGAGTTTTCAAGAATGTGGAGGGACCCTGGAGCTCCTGCTGATTCTTTCTACCAGGTTCGCCCTGAATGTACAAATGTTCCAAAAACAAGATTTAGAATCAAGGTTAGTTTTTTTAGTTTTTGATGCTAGGGGCATTGTATTACATTTGTGTTTTTTTGAATAGATTTTTGGTATGAGCTTGTATGAGAAGTTGGGATTCTAACTTGTTTGGGATTGAGGCGTAGTAGTAGTTGTTGTTGTTGTATGTTAGAAGCTTTTGTAGGACAACTAGTAATGTGCATGAATGAGGTAATCTATTGTGTTATGTTGTGGGATGTATTGAGATGATTGAAAAGATCATGTGTTTTGTTGAGATGGAAGATGTTTATCTGGCAGACCTTAGACTTGGGTTCTAGATGGGGATCATCAACTGCAATTAGCATCAGCCAAATCAAATGATCTATGGCTGCCAATGTCTCTCGTGGTAAAAAGAATGTAGAACCAAATATCTATTGGAAGTAATAAAGACTTCACAGTAGAACATAAATGTTTTGCTTACAGTTTGCTCTTCAGAATTTGATAGTGGCATAAAGCCTTATTGTTTGAAACATTTTTCGGTTTGCATCCCCATTTTAGTAGTTGGGACTGGTACTTGGTCCAAGATTACCTGGTTTTAAGTTGGGGAAAGGGGAATGTTCACCTGAATTTCCTTTTACATGTTTCATAAGCTGTACTTGCAGATTAAACTACTCTTCCCGTTCCAATTTAAGTGTCTTAGTTTGATTTAGTCTTAAATTAAAGATTTGTATAGTCCTTAAAAAAATCATGTGGTTTTGAACTTGTCGTGTAGAATATTGGAATTGAAAAACTTGCTAATATAGAAAGAGACTCTTTTTGGAACAAAACCAAGTGGGAAGTAAGACACTCAAATTGGGATAGAGGGAGTATATGTTTCCTGTTCCATCAATCTGTACAAACAATCTTTTACTCTTAGACTCTTCTCACTCTTTAACCTTGCCAATCAGTGAATTCAATTGGATGACATTTCCGGGTTTTAAACTTATGAGGTTGGCTGCTGTTGTGCAACATATAATGAGTGAATCTGCATGATGATTAGCATATATCATTTGATCCCTATTTGTTCCATAACGCGTGTGGCACATGTGGTGTGAACTAGTTTGCATTATATCTTAAGTCGGAACTGTGGGTATTTAGTGTAGAGTATATGTAAATCTTCAGTTGTGTCACATTAGTTGTCAGTAAGATGGATGAGCATTTCAAAAGGTCCCTCTTTTTTCATGAAAAGAACTGGATTTTTCGTTTATCTGCTTACCATCTCAAATAAGAATTCGAAAAGACTCTCTACATTGTCAATCATATAATGACGTTCAGAAGTAGTTCTCACATTTCTCTTGAATAAGTTGAACTCCTTACTAGATATCCACCATCTCCTGTATTTGTGTTGCCGGATATGTCTTATCTATTGATTTACTTATTCAGGCTGGGAAAACCTTAAGTGCAAGGAAATGGCGTGCTGCATTTACATCAGAAGGTTATCTTGACATTGGCAAAACACTGAGTCGAATTTATCGTGGGGTAAGTTTGACTTATTGATGTCAATGTTTTTGCAGGATTACATGATGTATGATCCTGAAGCTTCTATTCTACAGTTTTATTATACTAGCTGATTTGTTTGAACTCTTTTCAGTTTTGTTTGACTAATTCCATGAATATGCATTACTCATAAATTCCTGAAAAGATGATTAGCATAGAAGTCTAGTAACCATCAAATTTCTATGACATTATAGGGGATTCATCCATCAATTAGAGGTGAAGTTTGGGAATTTTTATTGGGTTGTTATGATCCAAAGAGCACATTTGAAGAACGAGAG</genome_strand>
        <mrna_strand>AGAAAATGTCACCGCC-CATACCTCAAAACTGTAAAACACCCTACTTTCCAAAAAAAGAAAAAAAAAAGTTTAGCCAAGCCATATGTAAATTAGGAAAAAGATCACTTTTTTATGTTGATTTTTGTGTGTTTCTTGAATTTCTGTCAAATGGGTAGCTAGGAAAACAAGTTTTATGATCTGGGGTTGTCCCATTTTTGTTTTTCTTGTTGAAAATCTGATCTGGGTTCTTGAGCTGCAGCTGTTGGGTTTCAAAGATTTGTTTTTTTTTTGTTTGGTTTGAGGAGTTTTCAAGAATGTGGAGGGACCCTGGAGCTCCTGCTGATTCTTTCTACCAGGTTCGCCCTGAATGTACAAATGTTCCCAAAACAAGATTCAGAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGAAAACCTTAAGTGCAAGGAAATGGCGTGCTGCATTTACATCAGAAGGTTATCTTGACATTGGCAAAACACTGAGTCGAGTTTATCGTGGG....................................................................................................................................................................................................................GGGATTCATCCATCAATGAGAGGTGAAGTTTGGGAATTTTTATTGGGTTGTTATGATCCAAAGAGCACATTTGAAGAACGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412982" ref_strand="+" ref_description="SGN-E412982 [STM-17-K5]">
      <seq>gtaaaacaccatactttccaaaaaaaagaaaaaaaaagtttagccaagcatatgtaaattacgaaaaagatcacttttttatgttgatttttgtgtgtttcttgaatttctgtcaaatgggtagctgggaaaacaagttttatgatctggggttgtcccatttttgtttttcttgttgaaaatctgatctgggttcttgagctgcagctgttgggtttcaaagattgtttttttttttgtttggtttgaggagttttcaagaatgtggagggaccctggagctcctgctgattctttctaccaggttcgccctgaatgtacaaatgtttccaaaacaagattcagaatcaaggctgggaaaaccttaagtgcaaggaaatggcgtgctgcatttacatcagaaggttatggtgatattggcaaaacactgagtcgagtttatcgtggggggatccatccatcaatgagaggtgaagtttgcgaattattattgggttgttatgatcccaagagcacatttgaagaacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="122103" stop="124821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122403" g_stop="122754" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122755" i_stop="124131" i_length="1377">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124132" g_stop="124227" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="448" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124228" i_stop="124439" i_length="212">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="0.039" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124440" g_stop="124521" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="530" r_length="82" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E412982" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122403" e_stop="122754"/>
          <exon e_start="124132" e_stop="124227"/>
          <exon e_start="124440" e_stop="124521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACACCATTCTTACCCAAAAAAAGAAAAAGAAAGTTTAGCTAAGTATTTGGCAATTAGGAAAAAGATCAAATTTTTATGTTGATTATAATGTGTTTCTTGAATTTCTGTCAAATGGGTAGCTAGAAAAACAAGTTTTATGATCTGGGGTTGTCTCATTTTTGTTTTTCTTGTTGAAAATCTGATCTGGGTTCTTGAGCTGCAGCTGTTGGGTTTCCAAGATTGTTTTTTTTTTTGTTTGGTTTGAGGAGTTTTCAAGAATGTGGAGGGACCCTGGAGCTCCTGCTGATTCTTTCTACCAGGTTCGCCCTGAATGTACAAATGTTCCAAAAACAAGATTTAGAATCAAGGTTAGTTTTTTTAGTTTTTGATGCTAGGGGCATTGTATTACATTTGTGTTTTTTTGAATAGATTTTTGGTATGAGCTTGTATGAGAAGTTGGGATTCTAACTTGTTTGGGATTGAGGCGTAGTAGTAGTTGTTGTTGTTGTATGTTAGAAGCTTTTGTAGGACAACTAGTAATGTGCATGAATGAGGTAATCTATTGTGTTATGTTGTGGGATGTATTGAGATGATTGAAAAGATCATGTGTTTTGTTGAGATGGAAGATGTTTATCTGGCAGACCTTAGACTTGGGTTCTAGATGGGGATCATCAACTGCAATTAGCATCAGCCAAATCAAATGATCTATGGCTGCCAATGTCTCTCGTGGTAAAAAGAATGTAGAACCAAATATCTATTGGAAGTAATAAAGACTTCACAGTAGAACATAAATGTTTTGCTTACAGTTTGCTCTTCAGAATTTGATAGTGGCATAAAGCCTTATTGTTTGAAACATTTTTCGGTTTGCATCCCCATTTTAGTAGTTGGGACTGGTACTTGGTCCAAGATTACCTGGTTTTAAGTTGGGGAAAGGGGAATGTTCACCTGAATTTCCTTTTACATGTTTCATAAGCTGTACTTGCAGATTAAACTACTCTTCCCGTTCCAATTTAAGTGTCTTAGTTTGATTTAGTCTTAAATTAAAGATTTGTATAGTCCTTAAAAAAATCATGTGGTTTTGAACTTGTCGTGTAGAATATTGGAATTGAAAAACTTGCTAATATAGAAAGAGACTCTTTTTGGAACAAAACCAAGTGGGAAGTAAGACACTCAAATTGGGATAGAGGGAGTATATGTTTCCTGTTCCATCAATCTGTACAAACAATCTTTTACTCTTAGACTCTTCTCACTCTTTAACCTTGCCAATCAGTGAATTCAATTGGATGACATTTCCGGGTTTTAAACTTATGAGGTTGGCTGCTGTTGTGCAACATATAATGAGTGAATCTGCATGATGATTAGCATATATCATTTGATCCCTATTTGTTCCATAACGCGTGTGGCACATGTGGTGTGAACTAGTTTGCATTATATCTTAAGTCGGAACTGTGGGTATTTAGTGTAGAGTATATGTAAATCTTCAGTTGTGTCACATTAGTTGTCAGTAAGATGGATGAGCATTTCAAAAGGTCCCTCTTTTTTCATGAAAAGAACTGGATTTTTCGTTTATCTGCTTACCATCTCAAATAAGAATTCGAAAAGACTCTCTACATTGTCAATCATATAATGACGTTCAGAAGTAGTTCTCACATTTCTCTTGAATAAGTTGAACTCCTTACTAGATATCCACCATCTCCTGTATTTGTGTTGCCGGATATGTCTTATCTATTGATTTACTTATTCAGGCTGGGAAAACCTTAAGTGCAAGGAAATGGCGTGCTGCATTTACATCAGAAGGTTATCTTGACATTGGCAAAACACTGAGTCGAATTTATCGTGGGGTAAGTTTGACTTATTGATGTCAATGTTTTTGCAGGATTACATGATGTATGATCCTGAAGCTTCTATTCTACAGTTTTATTATACTAGCTGATTTGTTTGAACTCTTTTCAGTTTTGTTTGACTAATTCCATGAATATGCATTACTCATAAATTCCTGAAAAGATGATTAGCATAGAAGTCTAGTAACCATCAAATTTCTATGACATTATAGGGGATTCATCCATCAATTAGAGGTGAAGTTTGGGAATTTTTATTGGGTTGTTATGATCCAAAGAGCACATTTGAAGAACGAG</genome_strand>
        <mrna_strand>GTAAAACACCATACTTTCCAAAAAAAAGAAAAAAAAAGTTTAGCCAAGCATATGTAAATTACGAAAAAGATCACTTTTTTATGTTGATTTTTGTGTGTTTCTTGAATTTCTGTCAAATGGGTAGCTGGGAAAACAAGTTTTATGATCTGGGGTTGTCCCATTTTTGTTTTTCTTGTTGAAAATCTGATCTGGGTTCTTGAGCTGCAGCTGTTGGGTTTCAAAGATTGTTTTTTTTTTTGTTTGGTTTGAGGAGTTTTCAAGAATGTGGAGGGACCCTGGAGCTCCTGCTGATTCTTTCTACCAGGTTCGCCCTGAATGTACAAATGTTTCCAAAACAAGATTCAGAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGAAAACCTTAAGTGCAAGGAAATGGCGTGCTGCATTTACATCAGAAGGTTATGGTGATATTGGCAAAACACTGAGTCGAGTTTATCGTGGG....................................................................................................................................................................................................................GGGATCCATCCATCAATGAGAGGTGAAGTTTGCGAATTATTATTGGGTTGTTATGATCCCAAGAGCACATTTGAAGAACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546425" ref_strand="+" ref_description="SGN-E546425 [TUS-69-M14](-)">
      <seq>agaagctcagctgagtaatctagcttcggtaacacaagttattgatcctaaacttcatcaacacttagagacattaggtggaggtgattacctatttgctatccgtatgctcatggttttgttccgtcgagaattctcttttgctgattcattatatctttgggagatgatgtgggcgttggaatatgatcccgacttgtttcttatgtatgaagaccctgacttagctgctgcaaaatctgaaggatctaaaggaagagcaaaatcgacacgccagtgtgggaaatttgagagagaaaatctgaaaaatcgaagcaaaggtactgaagctcccctcccaatttccgttttcctagtagccagtgtccttaaggacaagagcacaaagttgcttacagaagctaaaggactagacgacgttgttcagatactgaatgacatgactggaaacctggacgcgaagaaggcttgcactagtgcaatgaaacttcacaagaaatatctcaaaaaggcagccaatgccaacaggtaacaaaacacaaaaagccaaagaaagcgcgctacgcaattcataagccatgaaggtaatgtaaaatgaagcttgtgatggtacttcccctgttcaacgttgcaacagcacttctacagggtaagaatcctatcgtgattttcgatatttgattcagatatttttggttatgttgaggaagagttactgttttcgaatacattactatggcttgatttattgaagccaatgtaaatttccatttttcatcccccagctccaatttgggaagtctttttgtataccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="126294" stop="128090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126594" g_stop="126661" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126662" i_stop="126748" i_length="87">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126749" g_stop="126846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="166" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126847" i_stop="126915" i_length="69">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126916" g_stop="127176" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="427" r_length="261" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127177" i_stop="127266" i_length="90">
            <donor d_prob="0.847" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127267" g_stop="127350" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="511" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127351" i_stop="127536" i_length="186">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127537" g_stop="127784" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="759" r_length="248" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="815" polyA_stop="824"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E546425" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126594" e_stop="126661"/>
          <exon e_start="126749" e_stop="126846"/>
          <exon e_start="126916" e_stop="127176"/>
          <exon e_start="127267" e_stop="127350"/>
          <exon e_start="127537" e_stop="127784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTCAGCTGAGTAATCTTGCTTCAGTAACACAAGTTATTGACCCTAAACTTCATCACCACTTAGGTATTTTATGATCTTTTCCCAGTAAACAAACAATTTATCGTCTAATTTTCTTCGTGAAATGAATATGATTTTGATCATTTCTCACAGAGACATTAGGTGGAGGTGATTACCTATTTGCTATCCGTATGCTCATGGTTTTGTTCCGTCGAGAATTCTCTTTTGCTGATTCATTATATCTTTGGGAGGTACGACTTCTCTCCTGAATACTTAGTCTCTAAATGTTGAACTTCTCAGTCATTGCCTTGTTGCAACAGATGATGTGGGCGTTGGAATACGATCCCGACTTGTTTCTTATGTATGAAGACCCTGACTTAGCTGCTGCAAAATCTGAAGGATCTAAAGGAAGAGCAAAATCAACACGCCAGTGTGGGAAATTTGAGAGAGAAAATCTGAAAAATCGAAGCAAAGGTACTGAAGCTCCACTCCCAATTTCCGTTTTCCTAGTAGCCAGTGTCCTCAAGGACAAGAGCACAAAGTTGCTTACAGAAGCTAAAGGACTAGACGACGTTGTTCAGGTTGGTTTCGGAAGTACATAAAATTTAAACATCAATAGTCTTTTCAACGAAGAAAATTCTTTCGAATCAATATATTTGAACTATTAACAGATACTGAATGACATGACTGGAAACCTGGACGCGAAGAAGGCTTGCACTAGTGCAATGAAACTTCACAAGAAATATCTCAAAAAGGTAATGTACATCTAACTCAGGTGCAACACCACAAGTACTACTACTCTCTCCGGTCCTAATAACTCGTTACTCCTGCTAAAATTCGTTACAATAATACTTGTCGTTTTAGAAAATCAAAATGATATCCTTTGCTACTACTCAAATAAGTTGTGAATTTCACTTTCTAATGATGATTGCTTAAAACAGGCAGCCAATGCCAACAGGTAACAAAACAC-AAAAGCCAAAGAAAGCGCGTTACGCAATTCATAAGCCATGAAGGTAATGTAAAAATGAAGCTTGTGATGGTACTTCCCCTGTTCAACGTTGCAACAGTGTTGCTACAGGGTAAGAATCCTATCGCGATTTTCGATATTTGATTCAGGTATTTTTGGTTATGTTGAGGAAGAGGTACTGTTTTCGAATACATTACTATGGCTTGATTTATTGAAGCCAAT</genome_strand>
        <mrna_strand>AGAAGCTCAGCTGAGTAATCTAGCTTCGGTAACACAAGTTATTGATCCTAAACTTCATCAACACTTAG.......................................................................................AGACATTAGGTGGAGGTGATTACCTATTTGCTATCCGTATGCTCATGGTTTTGTTCCGTCGAGAATTCTCTTTTGCTGATTCATTATATCTTTGGGAG.....................................................................ATGATGTGGGCGTTGGAATATGATCCCGACTTGTTTCTTATGTATGAAGACCCTGACTTAGCTGCTGCAAAATCTGAAGGATCTAAAGGAAGAGCAAAATCGACACGCCAGTGTGGGAAATTTGAGAGAGAAAATCTGAAAAATCGAAGCAAAGGTACTGAAGCTCCCCTCCCAATTTCCGTTTTCCTAGTAGCCAGTGTCCTTAAGGACAAGAGCACAAAGTTGCTTACAGAAGCTAAAGGACTAGACGACGTTGTTCAG..........................................................................................ATACTGAATGACATGACTGGAAACCTGGACGCGAAGAAGGCTTGCACTAGTGCAATGAAACTTCACAAGAAATATCTCAAAAAG..........................................................................................................................................................................................GCAGCCAATGCCAACAGGTAACAAAACACAAAAAGCCAAAGAAAGCGCGCTACGCAATTCATAAGCCATGAAGGTAATGT-AAAATGAAGCTTGTGATGGTACTTCCCCTGTTCAACGTTGCAACAGCACTTCTACAGGGTAAGAATCCTATCGTGATTTTCGATATTTGATTCAGATATTTTTGGTTATGTTGAGGAAGAGTTACTGTTTTCGAATACATTACTATGGCTTGATTTATTGAAGCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718788" ref_strand="+" ref_description="SGN-E718788 [FC05DC08]">
      <seq>gggcgattggcggccaatcggccgaattgaccatcacaaacacttgcaaattgcaattaattaccaaaagtaattagccatggggaatatttcacttgttgctgctcttttattgtgcttgttagcattcgcaaatgctaacacgttctccgttacagtatctgtgacggagaacgacaatccacaaagctgtcaagagcagattcagagtcagagactcaatcactgcaggatgtatatttcaagaagccaccaatactttaacgacgagttgagcatggtaacagatgacgatcatgagatcaaccaaacccaagaacatctccaacaatgttgccaagaattgaggaacatggacactcaatgccgatgcccggcgcttaaaaaaatggtgatgcaggattgcggtagacaaggcgaaaaggcgcaacgtatgttagggaaagctcgttatattccgcgtatgtgtaacattcaacccgctcaatgtagcttctaattgatatagaagctcgatcagtataaaaaattacgttgaaagtactataataatgaacacacaatcgtgtgtatgtatgggaattaagcaagggttaatttggttttatcttatgggaaatgaaagagacttgagacttgttttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="135250" stop="133657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134940" g_stop="134741" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="231" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134740" i_stop="134372" i_length="369">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134371" g_stop="133960" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="643" r_length="412" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="670"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E718788" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134940" e_stop="134741"/>
          <exon e_start="134371" e_stop="133960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACAAACACTTGCAAATTGCAATTAATTACCAAAAGTAATTAGCCATGGGGAATATTTCACTTGTTGCTGCTCTTTTATTGTGCTTGTTAGCATTCGCAAATGCTAACACGTTCTCCGTTACAGTATCTGTGACGGAGAACGACAATCCACAAAGCTGTCAAGAGCAGATTCAGAGTCAGAGACTCAATCACTGCAGGTAAAAATTACTTAATTATACATAAAGAAATTAAAGTATTTTTTTAAAAAATTAATTTTTTATTTTAAGAAAATTAAAATATGAGTACATTAAATTTATTTTAAAAATTAATCGATTTAACTCTTATACTTTAAATCAGGTCAAATAAAGTGAAATTGAGCAAATACTATCCTTATACCACAATATTGTTTTACAAAAAAGACCAATGACACGTAAAACAAATATAAAATTATAACACACAAAGTAATGCCTTCACACAAACATAGAACTTAGTAATATCGACTCAATTTTTCTTAAAAAGTCCATTCATAACAACAAGTCAAACTTTTACGTACTAACATAAAATTCTAAATACGTTACTGATTTCAGGATGTATATTTCAAGAAGCCACCAATACTTTAACGACGAGTTGAGCATGGTAACAGATGACGATCATGAGATCAACCAAACCCAAGAACATCTCCAACAATGTTGCCAAGAATTGAGGAACATGGACACTCAATGCCGATGCCCGGCGCTTAAGAAAATGGTGATGCAGGATTGCGGTAGACAAGGCGAAGAGGCGCAACGTATGTTAGGGAAAGCTCGTTATATTCCGCGTATGTGTAACATTCAACCCGCTCAATGTAGCTTCTAATTGATATAGAAGCTCGATCAGTATAAAAAATTACGTTGAAAGTACTATAATAATGAACACACAATCGTGTGTATGTATGGGAATTAAGCAAGGGTTAATTTGGTTTTATCTTATGGGAAATGAAAGAGACTTGAGACTTGTTTT</genome_strand>
        <mrna_strand>CATCACAAACACTTGCAAATTGCAATTAATTACCAAAAGTAATTAGCCATGGGGAATATTTCACTTGTTGCTGCTCTTTTATTGTGCTTGTTAGCATTCGCAAATGCTAACACGTTCTCCGTTACAGTATCTGTGACGGAGAACGACAATCCACAAAGCTGTCAAGAGCAGATTCAGAGTCAGAGACTCAATCACTGCAG.................................................................................................................................................................................................................................................................................................................................................................................GATGTATATTTCAAGAAGCCACCAATACTTTAACGACGAGTTGAGCATGGTAACAGATGACGATCATGAGATCAACCAAACCCAAGAACATCTCCAACAATGTTGCCAAGAATTGAGGAACATGGACACTCAATGCCGATGCCCGGCGCTTAAAAAAATGGTGATGCAGGATTGCGGTAGACAAGGCGAAAAGGCGCAACGTATGTTAGGGAAAGCTCGTTATATTCCGCGTATGTGTAACATTCAACCCGCTCAATGTAGCTTCTAATTGATATAGAAGCTCGATCAGTATAAAAAATTACGTTGAAAGTACTATAATAATGAACACACAATCGTGTGTATGTATGGGAATTAAGCAAGGGTTAATTTGGTTTTATCTTATGGGAAATGAAAGAGACTTGAGACTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719952" ref_strand="+" ref_description="SGN-E719952 [FC09BE10]">
      <seq>aaatgctaacacgttctccgttacagaatctgtgacggagaacgacaatccacaaagctgtcaagagcagattcagagtcagagactcaatcactgcaggatgtatatttcaagaagccaccaatactttaacgacgagttgagcatggtaacaaatgacgatcatgagatcaaccaaacccaagaacatctccaacaatgttgccaagaattgaggaacatggacactcaatgccgatgcccggcgcttaaaaaaatggtgatgcaggattgcggtagacaaggcgaaaaggcgcaacgtatgttagggaaagctcgttatattccgcgtatgtgtaacattcaacccgctcaatgtagcttctaattgatatagaagctcgatcagtataaaaaattacgttgaaagtactataataatgaacacacaatcgtgtgtatgtatgggaattaagcaagggttaatttggttttatcttatgggaaatgaaagagacttgagacttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="135139" stop="133660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134839" g_stop="134741" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134740" i_stop="134372" i_length="369">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134371" g_stop="133960" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="511" r_length="412" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E719952" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134839" e_stop="134741"/>
          <exon e_start="134371" e_stop="133960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCTAACACGTTCTCCGTTACAGTATCTGTGACGGAGAACGACAATCCACAAAGCTGTCAAGAGCAGATTCAGAGTCAGAGACTCAATCACTGCAGGTAAAAATTACTTAATTATACATAAAGAAATTAAAGTATTTTTTTAAAAAATTAATTTTTTATTTTAAGAAAATTAAAATATGAGTACATTAAATTTATTTTAAAAATTAATCGATTTAACTCTTATACTTTAAATCAGGTCAAATAAAGTGAAATTGAGCAAATACTATCCTTATACCACAATATTGTTTTACAAAAAAGACCAATGACACGTAAAACAAATATAAAATTATAACACACAAAGTAATGCCTTCACACAAACATAGAACTTAGTAATATCGACTCAATTTTTCTTAAAAAGTCCATTCATAACAACAAGTCAAACTTTTACGTACTAACATAAAATTCTAAATACGTTACTGATTTCAGGATGTATATTTCAAGAAGCCACCAATACTTTAACGACGAGTTGAGCATGGTAACAGATGACGATCATGAGATCAACCAAACCCAAGAACATCTCCAACAATGTTGCCAAGAATTGAGGAACATGGACACTCAATGCCGATGCCCGGCGCTTAAGAAAATGGTGATGCAGGATTGCGGTAGACAAGGCGAAGAGGCGCAACGTATGTTAGGGAAAGCTCGTTATATTCCGCGTATGTGTAACATTCAACCCGCTCAATGTAGCTTCTAATTGATATAGAAGCTCGATCAGTATAAAAAATTACGTTGAAAGTACTATAATAATGAACACACAATCGTGTGTATGTATGGGAATTAAGCAAGGGTTAATTTGGTTTTATCTTATGGGAAATGAAAGAGACTTGAGACTTGTTTT</genome_strand>
        <mrna_strand>AAATGCTAACACGTTCTCCGTTACAGAATCTGTGACGGAGAACGACAATCCACAAAGCTGTCAAGAGCAGATTCAGAGTCAGAGACTCAATCACTGCAG.................................................................................................................................................................................................................................................................................................................................................................................GATGTATATTTCAAGAAGCCACCAATACTTTAACGACGAGTTGAGCATGGTAACAAATGACGATCATGAGATCAACCAAACCCAAGAACATCTCCAACAATGTTGCCAAGAATTGAGGAACATGGACACTCAATGCCGATGCCCGGCGCTTAAAAAAATGGTGATGCAGGATTGCGGTAGACAAGGCGAAAAGGCGCAACGTATGTTAGGGAAAGCTCGTTATATTCCGCGTATGTGTAACATTCAACCCGCTCAATGTAGCTTCTAATTGATATAGAAGCTCGATCAGTATAAAAAATTACGTTGAAAGTACTATAATAATGAACACACAATCGTGTGTATGTATGGGAATTAAGCAAGGGTTAATTTGGTTTTATCTTATGGGAAATGAAAGAGACTTGAGACTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330788" ref_strand="+" ref_description="SGN-E330788 [cTOD-8-P20]">
      <seq>gcattcaaatccaaatttggtgtttttccagcagtggtgcttgctctcttaactttctttcttttgacggataggttacactgatagtatcattcaacctgatgatatatgacttaaactctttctttactatactttgtggtgcactagcttgtaactactattcttctgtctcattttacgtggcacatttttagtatggtcacatttctatatacattattacattgagctttgaagttgaagagtaatgtaatcaagttatgacagcaaaatgaagaaagaaagaaaaaaaaatgttggtatgatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="136491" stop="135581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136191" g_stop="135890" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="323"/>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E330788" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136191" e_stop="135890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCAAATCCAAATTTGGTGTTTTTCCAGCAGTTTTGCTTGCTCTCTTAACTTTCTTTCTTTTGACGGATAGGTTACACTGATAGTATCATTCAACCTGATGATATATGACTTAAACTCTTTCTTTACTATACTTTGTGGTGCACTAGCTTGTAACTACTATTCTTCTGTCTCATTTTACGTGGCACATTTTTAGTATGGTCACATTTCTATATACATTATTACATTGAGCTTTGAAGTTGAAGAGTAATGTAATCAAGTTATGACAGCAAAATGAAGAAAGAAAGAAAAAAAAATGTTG</genome_strand>
        <mrna_strand>GCATTCAAATCCAAATTTGGTGTTTTTCCAGCAGTGGTGCTTGCTCTCTTAACTTTCTTTCTTTTGACGGATAGGTTACACTGATAGTATCATTCAACCTGATGATATATGACTTAAACTCTTTCTTTACTATACTTTGTGGTGCACTAGCTTGTAACTACTATTCTTCTGTCTCATTTTACGTGGCACATTTTTAGTATGGTCACATTTCTATATACATTATTACATTGAGCTTTGAAGTTGAAGAGTAATGTAATCAAGTTATGACAGCAAAATGAAGAAAGAAAGAAAAAAAAATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363264" ref_strand="+" ref_description="SGN-E363264 [cLPP-4-I5]">
      <seq>acttgcgcttgtggctgtgaagcgacgtctaaatgtgacgcgaacaaaaagccactacttctccctccagaagcgctactcgtcccttttgaaaatagggacttaatggcgaaagcttggagtaatatcaaacatcttggccctatgcctaagaaactaccttgtcctgataattgtggagtgagcatcaattggcatgtggatagtaactataaaacaggatggactgcgcgtataacgctctttaactggggaaatgacgcgtttgaaaactggttttcctctatccaaatgaagaaagatgtagctaatggctatgaaaacgtgtactcgtttaacggtacaaggttacctaaagaaaagagtaacactatatttatgcaaggtttacctggtttgaaattcttggttggagaggttaatgggactaatcctaataaggatccaagagtacctggaaaacaacaatcaattatttcatttttgaagaagaatacaccacatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="137088" stop="135983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136788" g_stop="136282" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E363264" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136788" e_stop="136282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCGCTTGTGGCTGTGAAGAGACGTCTAAATGTGACGCGAACAAAAAGCCACTACTTCTCCCTCCAGAAGCGCTACTCGTCCCTTTTGAAAATAGGGACTTAATGGCGAAAGCTTGGAGCAATATCAAACATCTTGGCCCTATGCCTAAGAAACTACCTTGTCCTGATAATTGCGGAGTGAGCATCAATTGGCATGTGGATAGTAACTATAAAACAGGATGGACTGCGCGTATAACGCTCTTTAACTGGGGAAATGACGCGTTTGAAAACTGGTTTTCCGCTATCCAAATGAAGAAAGATGTAGCTAATGGCTATGAAAACGTGTACTCGTTTAACGGTACAAGGTTACCTAAAGAAAAGAGTAACACTATATTTATGCAAGGTTTACCTGGTTTGAAATTCTTGGTTGGAGAGGTTAATGGGACTAATCCTAATAAGGATCCAAGAGTACCTGGAAAACAACAATCAATTATTTCATTTTTGAAGAAGAATACACCACATATC</genome_strand>
        <mrna_strand>ACTTGCGCTTGTGGCTGTGAAGCGACGTCTAAATGTGACGCGAACAAAAAGCCACTACTTCTCCCTCCAGAAGCGCTACTCGTCCCTTTTGAAAATAGGGACTTAATGGCGAAAGCTTGGAGTAATATCAAACATCTTGGCCCTATGCCTAAGAAACTACCTTGTCCTGATAATTGTGGAGTGAGCATCAATTGGCATGTGGATAGTAACTATAAAACAGGATGGACTGCGCGTATAACGCTCTTTAACTGGGGAAATGACGCGTTTGAAAACTGGTTTTCCTCTATCCAAATGAAGAAAGATGTAGCTAATGGCTATGAAAACGTGTACTCGTTTAACGGTACAAGGTTACCTAAAGAAAAGAGTAACACTATATTTATGCAAGGTTTACCTGGTTTGAAATTCTTGGTTGGAGAGGTTAATGGGACTAATCCTAATAAGGATCCAAGAGTACCTGGAAAACAACAATCAATTATTTCATTTTTGAAGAAGAATACACCACATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360122" ref_strand="+" ref_description="SGN-E360122 [cLPP-14-K2]">
      <seq>aatgttgtgtttctttctcggcttattatgctgcatccgttatcccctgcaacacttgcgcttgtggctgtgaagcgacgtctaaatgtgacgcgaacaaaaagccactacttctccctccagaagcgctactcgtcccttttgaaaatagggacttaatggcgaaagcttggagtaatatcaaacatcttggccctatgcctaagaaactaccttgtcctgataattgtggagtgagcatcaattggcatgtggatagtaactataaaacaggatggactgcgcgtataacgctctttaactggggaaatgacgcgtttgaaaactggttttcctctatccaaatgaagaaagatgtagctaatggctatgaaaacgtgtactcgtttaacggtacaaggttacctaaagaaaagagtaacactatatttatgcaaggtttacctggtttgaaattcttggttggagaggttaatgggactaatcctaataaggatccaagagtacctggaaaacaacaatcaattatttcatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="137141" stop="136003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136841" g_stop="136303" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E360122" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136841" e_stop="136303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGTGTTTCTTTTTCGGCTTATTATGCTGCATCCGTTATCCCCTGCAACACTTGCGCTTGTGGCTGTGAAGAGACGTCTAAATGTGACGCGAACAAAAAGCCACTACTTCTCCCTCCAGAAGCGCTACTCGTCCCTTTTGAAAATAGGGACTTAATGGCGAAAGCTTGGAGCAATATCAAACATCTTGGCCCTATGCCTAAGAAACTACCTTGTCCTGATAATTGCGGAGTGAGCATCAATTGGCATGTGGATAGTAACTATAAAACAGGATGGACTGCGCGTATAACGCTCTTTAACTGGGGAAATGACGCGTTTGAAAACTGGTTTTCCGCTATCCAAATGAAGAAAGATGTAGCTAATGGCTATGAAAACGTGTACTCGTTTAACGGTACAAGGTTACCTAAAGAAAAGAGTAACACTATATTTATGCAAGGTTTACCTGGTTTGAAATTCTTGGTTGGAGAGGTTAATGGGACTAATCCTAATAAGGATCCAAGAGTACCTGGAAAACAACAATCAATTATTTCATTTTTG</genome_strand>
        <mrna_strand>AATGTTGTGTTTCTTTCTCGGCTTATTATGCTGCATCCGTTATCCCCTGCAACACTTGCGCTTGTGGCTGTGAAGCGACGTCTAAATGTGACGCGAACAAAAAGCCACTACTTCTCCCTCCAGAAGCGCTACTCGTCCCTTTTGAAAATAGGGACTTAATGGCGAAAGCTTGGAGTAATATCAAACATCTTGGCCCTATGCCTAAGAAACTACCTTGTCCTGATAATTGTGGAGTGAGCATCAATTGGCATGTGGATAGTAACTATAAAACAGGATGGACTGCGCGTATAACGCTCTTTAACTGGGGAAATGACGCGTTTGAAAACTGGTTTTCCTCTATCCAAATGAAGAAAGATGTAGCTAATGGCTATGAAAACGTGTACTCGTTTAACGGTACAAGGTTACCTAAAGAAAAGAGTAACACTATATTTATGCAAGGTTTACCTGGTTTGAAATTCTTGGTTGGAGAGGTTAATGGGACTAATCCTAATAAGGATCCAAGAGTACCTGGAAAACAACAATCAATTATTTCATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333303" ref_strand="+" ref_description="SGN-E333303 [cTOD-20-O10]">
      <seq>gcatactcacaaaattgatccttctgaatgtatttacggaccacaaggacaatattacaaggatttcgatttcactcctgtgataaattgccaaaagaaaccaatcatttccgatttacctaaggagaaagcaaacgatgacaaatttgggaagttgccttattgttgtagaaacggaactcttttgtcacctataatgaacgaaacagaagcaaggtcgattttccagatggaagttttcaaacttccccctgatttaaacagaaccgcgttaaatccacctcaaaactggaaaatcacgggcacaattaacccgtcttattcatgtggaccgccagtcagaattgatccatcagtattcccggatcctaaaggaatcggaattgctactgctgttgctagttggcaaattacttgtaacattacgcgtcctaagcccaaagcagccaaatgttgtgtttctttttcggcttattatgctgcatccgttatcccctgcaacacttgcgcttgtggctgtgaagagacgtctaaatgtgacgcgaacaaaaagccactacttctccctccagaagcgctactcgtcccttttgaaaatagggacttaatggcgaaagcttggagcaatatcaaacatcttggccctatgcctaagaaactaccttgtcctgataattgcggagtgagcatcaattggcatgtggatagtaactataaaacaggatggactgcgcgtataacgctcttttaactggggaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="137590" stop="136229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137290" g_stop="136529" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E333303" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137290" e_stop="136529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATACTCACAAAATTGATCCTTCTGAATGTATTTACGGACCACAAGGACAATATTACAAGGATTTCGATTTCACTCCTGTGATAAATTGCCAAAAGAAACCAATCATTTCCGATTTACCTAAGGAGAAAGCAAACGATGACAAATTTGGGAAGTTGCCTTATTGTTGTAGAAACGGAACTCTTTTGTCACCTATAATGAACGAAACAGAAGCAAGGTCGATTTTCCAGATGGAAGTTTTCAAACTTCCCCCTGATTTAAACAGAACCGCGTTAAATCCACCTCAAAACTGGAAAATCACGGGCACAATTAACCCGTCTTATTCATGTGGACCGCCAGTCAGAATTGATCCATCAGTATTCCCGGATCCTAAAGGAATCGGAATTGCTACTGCTGTTGCTAGTTGGCAAATTACTTGTAACATTACGCGTCCTAAGCCCAAAGCAGCCAAATGTTGTGTTTCTTTTTCGGCTTATTATGCTGCATCCGTTATCCCCTGCAACACTTGCGCTTGTGGCTGTGAAGAGACGTCTAAATGTGACGCGAACAAAAAGCCACTACTTCTCCCTCCAGAAGCGCTACTCGTCCCTTTTGAAAATAGGGACTTAATGGCGAAAGCTTGGAGCAATATCAAACATCTTGGCCCTATGCCTAAGAAACTACCTTGTCCTGATAATTGCGGAGTGAGCATCAATTGGCATGTGGATAGTAACTATAAAACAGGATGGACTGCGCGTATAACGCTC-TTTAACTGGGGAAATGA</genome_strand>
        <mrna_strand>GCATACTCACAAAATTGATCCTTCTGAATGTATTTACGGACCACAAGGACAATATTACAAGGATTTCGATTTCACTCCTGTGATAAATTGCCAAAAGAAACCAATCATTTCCGATTTACCTAAGGAGAAAGCAAACGATGACAAATTTGGGAAGTTGCCTTATTGTTGTAGAAACGGAACTCTTTTGTCACCTATAATGAACGAAACAGAAGCAAGGTCGATTTTCCAGATGGAAGTTTTCAAACTTCCCCCTGATTTAAACAGAACCGCGTTAAATCCACCTCAAAACTGGAAAATCACGGGCACAATTAACCCGTCTTATTCATGTGGACCGCCAGTCAGAATTGATCCATCAGTATTCCCGGATCCTAAAGGAATCGGAATTGCTACTGCTGTTGCTAGTTGGCAAATTACTTGTAACATTACGCGTCCTAAGCCCAAAGCAGCCAAATGTTGTGTTTCTTTTTCGGCTTATTATGCTGCATCCGTTATCCCCTGCAACACTTGCGCTTGTGGCTGTGAAGAGACGTCTAAATGTGACGCGAACAAAAAGCCACTACTTCTCCCTCCAGAAGCGCTACTCGTCCCTTTTGAAAATAGGGACTTAATGGCGAAAGCTTGGAGCAATATCAAACATCTTGGCCCTATGCCTAAGAAACTACCTTGTCCTGATAATTGCGGAGTGAGCATCAATTGGCATGTGGATAGTAACTATAAAACAGGATGGACTGCGCGTATAACGCTCTTTTAACTGGGGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363506" ref_strand="+" ref_description="SGN-E363506 [cLPP-4-N5]">
      <seq>tcaagtcacactcgacaatctgaatcctttgggtcgtcttgatcattggaacttaacgtgggagtggatgaggaacgagttcattaacacaattaaaggcgcgcatactcacaaaattgatccttctgaatgtatttacggaccacaaggacaatattacaaggatttcgatttcactactgtgataaattgccaaaagaaaccaatcatttccgatttacctaaggagaaagcaaacgatgacaaatttgggaagttgccttattgttgtagaaacggaactcttttgtcacctataatgaacgaaacagaagcaaggtcgatttttcagatggaagttttcaaacttccccctgatttaaacagaaccgcgttaaatccacctcaaaactggaaaatcatgggcacaattaacccgtcttattcatgtggaccgccagtcagaattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="137692" stop="136641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137392" g_stop="136941" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E363506" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137392" e_stop="136941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCACACTCGACAATCTGAATCCTTTGGGTCGTCTTGATCATTGGAACTTAACGTGGGAGTGGATGAGGAACGAGTTCATTAACACAATTAAAGGCGCGCATACTCACAAAATTGATCCTTCTGAATGTATTTACGGACCACAAGGACAATATTACAAGGATTTCGATTTCACTCCTGTGATAAATTGCCAAAAGAAACCAATCATTTCCGATTTACCTAAGGAGAAAGCAAACGATGACAAATTTGGGAAGTTGCCTTATTGTTGTAGAAACGGAACTCTTTTGTCACCTATAATGAACGAAACAGAAGCAAGGTCGATTTTCCAGATGGAAGTTTTCAAACTTCCCCCTGATTTAAACAGAACCGCGTTAAATCCACCTCAAAACTGGAAAATCACGGGCACAATTAACCCGTCTTATTCATGTGGACCGCCAGTCAGAATTGATC</genome_strand>
        <mrna_strand>TCAAGTCACACTCGACAATCTGAATCCTTTGGGTCGTCTTGATCATTGGAACTTAACGTGGGAGTGGATGAGGAACGAGTTCATTAACACAATTAAAGGCGCGCATACTCACAAAATTGATCCTTCTGAATGTATTTACGGACCACAAGGACAATATTACAAGGATTTCGATTTCACTACTGTGATAAATTGCCAAAAGAAACCAATCATTTCCGATTTACCTAAGGAGAAAGCAAACGATGACAAATTTGGGAAGTTGCCTTATTGTTGTAGAAACGGAACTCTTTTGTCACCTATAATGAACGAAACAGAAGCAAGGTCGATTTTTCAGATGGAAGTTTTCAAACTTCCCCCTGATTTAAACAGAACCGCGTTAAATCCACCTCAAAACTGGAAAATCATGGGCACAATTAACCCGTCTTATTCATGTGGACCGCCAGTCAGAATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360983" ref_strand="+" ref_description="SGN-E360983 [cLPP-13-N11]">
      <seq>attggctgggtatccacaatccgatttgaaaacggcgattgataccgccggtgattttactcagatgtcagctcgaatcaatattaaggggacgcaatttggtcttagagagaaaacaaatccaatgccttcaacaatcaagctcgtcaatgaaggatacaaatgccctgctcctaagcgctataaaagttacatgcatgtttgttgcaagagggatcttaaattcaagcctaagaaggtggttaccaagttcatgcctcgtcgttatggagatctttccataacgtacgatgttctatcagcattcacgaataggtatcaggctcaagtcacactcgacaatctgaatcctttgggtcgtcttgatcattggaacttaacgtgggagtggatgaggaacgagttcattaacacaattaaaggcgcgcatactcacaaaattgatccttctgaatgtatttacggaccacaaggacaatattacaaggatttcgatttcactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138109" stop="136912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137809" g_stop="137625" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137624" i_stop="137532" i_length="93">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137531" g_stop="137212" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="505" r_length="320" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E360983" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137809" e_stop="137625"/>
          <exon e_start="137531" e_stop="137212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCAAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAACAAATCCAATGCCTTCAACAATCAAGCTCGTCAATGAAGGATACAAATGCCCTGCTCCTAAGCGCTATAGTACGTATGTCGTGAATACTTATCTGCACCGAGTATTTACATCAAATTAACGAATGTATTATTCAATTTTGGTATTTCGATGTTTAATTGCAGAAAGTTACATGCATGTCTGTTGCAAGAGGGATCTTAAATTCAAGCCTAAGAAGGTGGTTACCAAGTTCATGCCTCGTCGTTATGGAGATCTTTCCATAACTTACGATGTTCTATCAGCATTCACGAATAGGTATCAGGCTCAAGTCACACTCGACAATCTGAATCCTTTGGGTCGTCTTGATCATTGGAACTTAACGTGGGAGTGGATGAGGAACGAGTTCATTAACACAATTAAAGGCGCGCATACTCACAAAATTGATCCTTCTGAATGTATTTACGGACCACAAGGACAATATTACAAGGATTTCGATTTCACTCCT</genome_strand>
        <mrna_strand>ATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCGAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAACAAATCCAATGCCTTCAACAATCAAGCTCGTCAATGAAGGATACAAATGCCCTGCTCCTAAGCGCTATA.............................................................................................AAAGTTACATGCATGTTTGTTGCAAGAGGGATCTTAAATTCAAGCCTAAGAAGGTGGTTACCAAGTTCATGCCTCGTCGTTATGGAGATCTTTCCATAACGTACGATGTTCTATCAGCATTCACGAATAGGTATCAGGCTCAAGTCACACTCGACAATCTGAATCCTTTGGGTCGTCTTGATCATTGGAACTTAACGTGGGAGTGGATGAGGAACGAGTTCATTAACACAATTAAAGGCGCGCATACTCACAAAATTGATCCTTCTGAATGTATTTACGGACCACAAGGACAATATTACAAGGATTTCGATTTCACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378298" ref_strand="+" ref_description="SGN-E378298 [TUS-33-M20]">
      <seq>cacgccgttgtgtcatttctccaacggcattagctggtgatcatcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaacgggcaggattacggaggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcgtcggatttcagcataacgagcttttagtatcggcggaaggtgcagttgcaattgacggcgatggatttccggtacgggtgggtaaaaatggtactacattggctgggtatccacaatccgatttgaaaacggcgattgataccgccggtgattttactcagatgtcagctcgaatcaatattaaggggacgcaatttggtcttagagagaaaacaaatccaatgccttcaacaatcaagctcgtcaatgaaggatacaaatgccctgctcctaagcgctataaaagttacatgcatgtttgttgcaagagggatcttaaattcaagcctaagaaggtggttaccaagttcatgcctcgtcngtatggagatctttccataacgtacgatgttctatcagcattcacgaataggtatcangctcaagtcacactcgacaatctgaatcctttgggtcgtcttgatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138635" stop="137046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138335" g_stop="137625" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137624" i_stop="137532" i_length="93">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137531" g_stop="137346" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="896" r_length="186" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E378298" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138335" e_stop="137625"/>
          <exon e_start="137531" e_stop="137346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGACGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACAACATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCAAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAACAAATCCAATGCCTTCAACAATCAAGCTCGTCAATGAAGGATACAAATGCCCTGCTCCTAAGCGCTATAGTACGTATGTCGTGAATACTTATCTGCACCGAGTATTTACATCAAATTAACGAATGTATTATTCAATTTTGGTATTTCGATGTTTAATTGCAGAAAGTTACATGCATGTCTGTTGCAAGAGGGATCTTAAATTCAAGCCTAAGAAGGTGGTTACCAAGTTCATGCCTCGTCGTTATGGAGATCTTTCCATAACTTACGATGTTCTATCAGCATTCACGAATAGGTATCAGGCTCAAGTCACACTCGACAATCTGAATCCTTTGGGTCGTCTTGATCATT</genome_strand>
        <mrna_strand>CACGCCGTTGTGTCATTTCTC-CAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCAGGATTACGGAGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCGTCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGAAGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACTACATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCGAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAACAAATCCAATGCCTTCAACAATCAAGCTCGTCAATGAAGGATACAAATGCCCTGCTCCTAAGCGCTATA.............................................................................................AAAGTTACATGCATGTTTGTTGCAAGAGGGATCTTAAATTCAAGCCTAAGAAGGTGGTTACCAAGTTCATGCCTCGTCNGTATGGAGATCTTTCCATAACGTACGATGTTCTATCAGCATTCACGAATAGGTATCANGCTCAAGTCACACTCGACAATCTGAATCCTTTGGGTCGTCTTGATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361179" ref_strand="+" ref_description="SGN-E361179 [cLPP-13-H12]">
      <seq>aggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcgtcggatttcagcataacgagcttttagtatcggcggaaggtgcagttgcaattgacggcgatggatttccggtacgggtgggtaaaaatggtactacattggctgggtatccacaatccgatttgaaaacggcgattgataccgccggtgattttactcagatgtcagctcgaatcaatattaaggggacgcaatttggtcttagagagaaaacaaatccaatgccttcaacaatcaagctcgtcaatgaaggatacaaatgccctgctcctaagcgctataaaagttacatgcatgtttgttgcaagagggatcttaaattcaagcctaagaaggtggttaccaagttcatgcctcgtcgttatggagatctttccataacgtacgatgttctatcagcattcacgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138403" stop="137103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138103" g_stop="137625" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137624" i_stop="137532" i_length="93">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137531" g_stop="137403" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="608" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E361179" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138103" e_stop="137625"/>
          <exon e_start="137531" e_stop="137403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGACGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACAACATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCAAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAACAAATCCAATGCCTTCAACAATCAAGCTCGTCAATGAAGGATACAAATGCCCTGCTCCTAAGCGCTATAGTACGTATGTCGTGAATACTTATCTGCACCGAGTATTTACATCAAATTAACGAATGTATTATTCAATTTTGGTATTTCGATGTTTAATTGCAGAAAGTTACATGCATGTCTGTTGCAAGAGGGATCTTAAATTCAAGCCTAAGAAGGTGGTTACCAAGTTCATGCCTCGTCGTTATGGAGATCTTTCCATAACTTACGATGTTCTATCAGCATTCACGAATA</genome_strand>
        <mrna_strand>AGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCGTCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGAAGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACTACATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCGAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAACAAATCCAATGCCTTCAACAATCAAGCTCGTCAATGAAGGATACAAATGCCCTGCTCCTAAGCGCTATA.............................................................................................AAAGTTACATGCATGTTTGTTGCAAGAGGGATCTTAAATTCAAGCCTAAGAAGGTGGTTACCAAGTTCATGCCTCGTCGTTATGGAGATCTTTCCATAACGTACGATGTTCTATCAGCATTCACGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333928" ref_strand="+" ref_description="SGN-E333928 [cTOD-24-D1]">
      <seq>tttcacacaacggcattagctggtgatcatcgatcaccggtctcttctggtttcatcattcccgtgaatgtgatcgcaaacaaagtcatttaaaaacaaaatcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttatcaaacatgtaacgggcaggattacggaggagacgaaaaaacggtagcagcaccgccaccggagcaagagaattgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatccgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcatcggatttcagcataacgagcttttagtatcggcggacggtgcagttgcaattgacggcgatggatttccggtacgggtgggtaaaaatggtacaacattggctgggtatccacaatccgatttgaaaacggcgattgataccgccggtgattttactcagatgtcagctcaaatcaatattaaggggacgcaatttggtcttagagagaannaacaatcaatgcccttcacnatcaagctcgtcaatgaaggatacnaaatgcctgctcctaagcgctataaaaagtacatgcatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138620" stop="137311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138320" g_stop="137625" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137624" i_stop="137532" i_length="93">
            <donor d_prob="0.945" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137531" g_stop="137514" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="714" r_length="18" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E333928" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138320" e_stop="137625"/>
          <exon e_start="137531" e_stop="137514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGACGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACAACATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCAAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAACAAATCCAATGCCTTCAACAATCAAGCTCGTCAATGAAGGATACAAATGCCCTGCTCCTAAGCGCTATAGTACGTATGTCGTGAATACTTATCTGCACCGAGTATTTACATCAAATTAACGAATGTATTATTCAATTTTGGTATTTCGATGTTTAATTGCAGAAAGTTACATGCATGTCT</genome_strand>
        <mrna_strand>TTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGACGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACAACATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCAAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAANNAACAATCAATGCCCTTCACNATCAAGCTCGTCAATGAAGGATACNAAATGCCTGCTCCTAAGCGCTATA.............................................................................................AAAAGTACATGCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359871" ref_strand="+" ref_description="SGN-E359871 [cLPP-9-H7]">
      <seq>gcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcgtcggatttcagcataacgagcttttagtatcggcggaaggtgcagttgcaattgacggcgatggatttccggtacgggtgggtaaaaatggtactacattggctgggtatccacaatccgatttgaaaacggcgattgataccgccggtgattttactcagatgtcagctcgaatcaatattaaggggacgcaatttggtcttagagagaaaacaaatccaatgccttcaacaatcaagctcgtcaatgaaggatacaaatgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138384" stop="137341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138084" g_stop="137641" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E359871" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138084" e_stop="137641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGACGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACAACATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCAAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAACAAATCCAATGCCTTCAACAATCAAGCTCGTCAATGAAGGATACAAATGCCCT</genome_strand>
        <mrna_strand>GCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCGTCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGAAGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACTACATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCGAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAACAAATCCAATGCCTTCAACAATCAAGCTCGTCAATGAAGGATACAAATGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363015" ref_strand="+" ref_description="SGN-E363015 [cLPP-2-F5]">
      <seq>cttgaccaccccacgccgttgtgtcatttcacacaacggcattagctggtgatcatcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaacgggcaggattacggaggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcgtcggatttcagcataacgagcttttagtatcggcggaaggtgcagttgcaattgacggcgatggatttccggtacgggtgggtaaaaatggtactacattggctgggtatccacaatccgatttgaaaacggcgattgataccgccggtgattttactcagatgtcagctcgaatcaatattaaggggacgcaatttggtcttagagagaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138645" stop="137393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138346" g_stop="137693" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E363015" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138346" e_stop="137693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTACCACCCCACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGACGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACAACATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCAAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAAC</genome_strand>
        <mrna_strand>CTTGACCACCCCACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCAGGATTACGGAGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCGTCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGAAGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACTACATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCGAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360980" ref_strand="+" ref_description="SGN-E360980 [cLPP-13-L13]">
      <seq>ttgaccaccccacgccgttgtgtcatttcacacaacggcattagctggtgatcatcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaacgggcaggattacggaggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcgtcggatttcagcataacgagcttttagtatcggcggaaggtgcagttgcaattgacggcgatggatttccggtacgggtgggtaaaaatggtactacattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138644" stop="137504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138345" g_stop="137804" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E360980" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138345" e_stop="137804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACCACCCCACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGACGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACAACATTGGC</genome_strand>
        <mrna_strand>TTGACCACCCCACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCAGGATTACGGAGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCGTCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGAAGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACTACATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363523" ref_strand="+" ref_description="SGN-E363523 [cLPP-4-D14]">
      <seq>ccacgccgttgtgtcatttcacacaacggcattagctggtgatcatcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaacgggcaggattacggaggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcgtcggatttcagcataacgagcttttagtatcggcggaaggtgcagttgcaattgacggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138636" stop="137548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138336" g_stop="137848" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E363523" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138336" e_stop="137848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGACGGTGCAGTTGCAATTGACGGC</genome_strand>
        <mrna_strand>CCACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCAGGATTACGGAGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCGTCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGAAGGTGCAGTTGCAATTGACGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360544" ref_strand="+" ref_description="SGN-E360544 [cLPP-8-N7]">
      <seq>atcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctattgggtcgaactaattttggttgcgtgcagttgtcaaacctgtaacgggcaggattacggaggagaggaaaaaccggttgcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacaaggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcgtcggatttcagcataacgagcttttagtatcggcggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138592" stop="137570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138292" g_stop="137869" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E360544" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138292" e_stop="137869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGAC</genome_strand>
        <mrna_strand>ATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTATTGGGTCGAACTAATTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCAGGATTACGGAGGAGAGGAAAAACCGGTTGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAAGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCGTCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364525" ref_strand="+" ref_description="SGN-E364525 [cLPP-18-F7]">
      <seq>tcatttcacacaacggcattagctggtgatcatcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaacgggcaggattacggaggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcgtcggatttcagcataacgagcttttagtatcggcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138623" stop="137570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138323" g_stop="137870" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E364525" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138323" e_stop="137870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGA</genome_strand>
        <mrna_strand>TCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCAGGATTACGGAGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCGTCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361591" ref_strand="+" ref_description="SGN-E361591 [cLPP-6-D18]">
      <seq>tcatttcacacaacggcattagctggtgatcatcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaaccggcaggattacggaggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcgtcggatttcagcataacgagcttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138623" stop="137580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138323" g_stop="137880" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E361591" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138323" e_stop="137880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAG</genome_strand>
        <mrna_strand>TCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACCGGCAGGATTACGGAGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCGTCGGATTTCAGCATAACGAGCTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360680" ref_strand="+" ref_description="SGN-E360680 [cLPP-7-P7]">
      <seq>gccgttgtgtcatttcacacaacggcattagctggtgatcatcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaacgggcaggattacggaggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcgtcggatttcagcataacgagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138632" stop="137582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138332" g_stop="137882" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E360680" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138332" e_stop="137882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTT</genome_strand>
        <mrna_strand>GCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCAGGATTACGGAGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCGTCGGATTTCAGCATAACGAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362779" ref_strand="+" ref_description="SGN-E362779 [cLPP-2-K23]">
      <seq>cacgccgttgtgtcatttcacacaacggcattagctggtgatcatcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaacgggcaggattacggaggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcatggcaagttttcgtcggatttcagcataacgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138635" stop="137586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138335" g_stop="137886" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E362779" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138335" e_stop="137886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGC</genome_strand>
        <mrna_strand>CACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCAGGATTACGGAGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCGTCGGATTTCAGCATAACGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361539" ref_strand="+" ref_description="SGN-E361539 [cLPP-6-B3]">
      <seq>tcatttcacacaacggcattagctggtgatcatcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaacgggcaggattacggaggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138623" stop="137619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138323" g_stop="137919" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E361539" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138323" e_stop="137919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCAT</genome_strand>
        <mrna_strand>TCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCAGGATTACGGAGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365146" ref_strand="+" ref_description="SGN-E365146 [cLPP-17-O22]">
      <seq>tgaccaccccacgccgttgtgtcatttcacacaacggcattagctggtgatcatcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaacgggcaggattacggaggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttgaatgccggaacttttgagctgaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138644" stop="137620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138344" g_stop="137920" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E365146" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138344" e_stop="137920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCACCCCACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCA</genome_strand>
        <mrna_strand>TGACCACCCCACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCAGGATTACGGAGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359555" ref_strand="+" ref_description="SGN-E359555 [cLPP-5-G19]">
      <seq>tctccattttcgtccatttttcccccttgaccaccccacgccgttgtgtcatttcacacaacggcattagctggtgatcatcgatcaccggtctcttctgctttcatcattcccgtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaacgggcaggattacggaggagaggaaaaaccggtagcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatccattagtgaagaatgtatctgcacagggatggtcattcaagtcgatgttaacggtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138670" stop="137647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138370" g_stop="137947" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E359555" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138370" e_stop="137947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATTTTCGTCCATTTTTTCCCCTT-ACCACCCCACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTG</genome_strand>
        <mrna_strand>TCTCCATTTTCGTCCATTTTTCCCCCTTGACCACCCCACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGCTTTCATCATTCCCGTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCAGGATTACGGAGGAGAGGAAAAACCGGTAGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCTGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361442" ref_strand="+" ref_description="SGN-E361442 [cLPP-6-F2]">
      <seq>gtgaatgtgatcgcaaacaaaatcatttaaaaacaaaagcccagatatattcctccataattaaaggaatgcaaattccatggaggaatatctcttgggtcgtactagttttggttgcgtgcagttgtcaaacctgtaacgggcatgattacggaggagaggaaaaaccggttgcagcaccgccaccggagcaagagacttgcgatggaatcttcatcacctataatttcgatggacgagaaaagatatatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="138557" stop="137704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138257" g_stop="138004" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E361442" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138257" e_stop="138004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCA</genome_strand>
        <mrna_strand>GTGAATGTGATCGCAAACAAAATCATTTAAAAACAAAAGCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTGTCAAACCTGTAACGGGCATGATTACGGAGGAGAGGAAAAACCGGTTGCAGCACCGCCACCGGAGCAAGAGACTTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624095" ref_strand="+" ref_description="SGN-E624095 [GI|1321996]">
      <seq>gcagtggtggcaaaagatggaacaggggattatcaaacacttgctgaagcagttgctgcagcaccagataggagtaagacgcgttatgtaatttatgtaaagatgggaatttataaagagaatgttgaggtgactagcaggaaaatgaacttgatgattgttggtgatggcatgaatgctaccatcattactggtagccttaattttgttgatggaacaacaaccttccgctctgccactcttgctgcagttggccaaggatttatactacaggacatatgtatacagaacacagcaggaccagagaaacaccaagcagtggcacttcgaattggaggtgatatgtctgtcataaatcgttgtcgtattgatgcttatcaagacaccctatatgcacattctcaaaggcaattctatcgagactcttacgtgtcagggactattgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgagtaaatatcagaaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacgggaacatcaattcagttctgtgacataatagctagtccggaccttgaaccagtcgtgaatgaattcaaaacatatcttggtaggccatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140738" stop="139232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140438" g_stop="140195" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140194" i_stop="140037" i_length="158">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140036" g_stop="139845" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="436" r_length="192" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="139844" i_stop="139756" i_length="89">
            <donor d_prob="0.685" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139755" g_stop="139532" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="660" r_length="224" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E624095" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140438" e_stop="140195"/>
          <exon e_start="140036" e_stop="139845"/>
          <exon e_start="139755" e_stop="139532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCTGTTGATGCTGCACCAGATAAGAATAAGACGCGTTATGTAATTTATGTAAAGATGGGAATTTATAAAGAGAATGTTGTGGTGACTAAGAAAAAAATGAACTTAATGATTGTTGGTGATGGCATGAATGCTACCATCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTGGTAAGGTTTCAACAACTTATGTATATATAGTAGATGTTGAACCCTTTAGCGTCTTTGTTATGTATACTTTTGATATTTCAAACACCCTTAATGAAAATCCTGGTTCCGCTATCATGAGCAAGTGTAACATATACTAGTGCATTTTCATAATATTGCAGCTGCAGTTGGCCAAGGATTTATACTACAGGACTTATGTATACAGAACACAGCAGGGCCAGAGAAAGGCCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATTGATGCTTATCAAGACACCCTATATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTCGTGAAGCAGATTACCCCAAATGTGCTATGCTTTCCATTGAACTCAGTATTAAAAAGTTCAAAATCCTAAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGTCAGATCGTAGCTAGAAAACCGAATAAAAGACAGAAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTGACATAATTGCAAGTCCGGACCTTGAACCAGTCATGAATGAATACAAAACATATCTTGGTAGGCCATGGAAA</genome_strand>
        <mrna_strand>GCAGTGGTGGCAAAAGATGGAACAGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAGGAGTAAGACGCGTTATGTAATTTATGTAAAGATGGGAATTTATAAAGAGAATGTTGAGGTGACTAGCAGGAAAATGAACTTGATGATTGTTGGTGATGGCATGAATGCTACCATCATTACTGGTAGCCTTAATTTTGTTGATGGAACAACAACCTTCCGCTCTGCCACTCTTG..............................................................................................................................................................CTGCAGTTGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGAGAAACACCAAGCAGTGGCACTTCGAATTGGAGGTGATATGTCTGTCATAAATCGTTGTCGTATTGATGCTTATCAAGACACCCTATATGCACATTCTCAAAGGCAATTCTATCGAGACTCTTACGTGTCAG.........................................................................................GGACTATTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGAGTAAATATCAGAAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGAACATCAATTCAGTTCTGTGACATAATAGCTAGTCCGGACCTTGAACCAGTCGTGAATGAATTCAAAACATATCTTGGTAGGCCATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259886" ref_strand="+" ref_description="SGN-E259886 [cLEG-51-P4]">
      <seq>ccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacgaggcaggacggacccaaatcatgccacggggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140269" stop="139320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139969" g_stop="139845" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139844" i_stop="139756" i_length="89">
            <donor d_prob="0.685" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="139755" g_stop="139620" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="261" r_length="136" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E259886" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139969" e_stop="139845"/>
          <exon e_start="139755" e_stop="139620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATTGATGCTTATCAAGACACCCTATATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTCGTGAAGCAGATTACCCCAAATGTGCTATGCTTTCCATTGAACTCAGTATTAAAAAGTTCAAAATCCTAAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGTCAGATCGTAGCTAGAAAACCGAATAAAAGACAGAAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGAC</genome_strand>
        <mrna_strand>CCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG.........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACGAGGCAGGACGGACCCAAATCATGCCACGGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259918" ref_strand="+" ref_description="SGN-E259918 [cLEG-51-A6]">
      <seq>ccaagcagtggcacttcgagttggagctgatatgtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacaggtactgttgatttcatatttggtaatgcaacagctgtattccataaatgccaactcgtaactagaaaaccgggtaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140269" stop="139379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139969" g_stop="139845" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139844" i_stop="139756" i_length="89">
            <donor d_prob="0.685" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="139755" g_stop="139677" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="204" r_length="79" r_score="0.861"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E259918" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139969" e_stop="139845"/>
          <exon e_start="139755" e_stop="139677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATTGATGCTTATCAAGACACCCTATATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTCGTGAAGCAGATTACCCCAAATGTGCTATGCTTTCCATTGAACTCAGTATTAAAAAGTTCAAAATCCTAAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGTCAGATCGTAGCTAGAAAACCGAATAAAAG</genome_strand>
        <mrna_strand>CCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG.........................................................................................GTACTGTTGATTTCATATTTGGTAATGCAACAGCTGTATTCCATAAATGCCAACTCGTAACTAGAAAACCGGGTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480354" ref_strand="-" ref_description="SGN-E480354 [cSTD-13-L9]">
      <seq>gcatttgctttgatgtctttacccgaactctccatcagcttcctatccctcgaactcacccaagatggcatttttcctaaaaccgtcctgaaaacatcctcattctgagttgttacagacgcgagcatcgccaatgctaccctagctctagtgatcaactcatcaagaactgttccattcttagtacttaacgaatcaaggcacgtaacgtggttagtaagcacaccacttagccaactttgcgcattggcatgccccgagtgacttcttttatcaattgctacaattgaatcagatactaaatcaactgacagatcaagaagctcaagacaatcagttaaagccccttgttgacgaatgtcattgatctgattctttattttgcgaaccactggaattgcactgttcatttgatgaacatatttaactaagaatttcttcagaatacttagtccatcagaacttgatgtgacaatttcattggacattaaatcagagacataactaaggcagagttgggaatcttgtgcagccttacatagattagaatgttcaatctcaacttggtatggagcaacaagaaacacaactaagaagagagcaacaaagaaagttatgacaaatgtgaggatcttgaagctgattattggattttgtttgtgagtttttgttaacaaaggttggtgaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="92121" stop="144584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140437" g_stop="140631" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140632" i_stop="143788" i_length="3157">
            <donor d_prob="0.766" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143789" g_stop="144284" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="691" r_length="496" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E480354" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480354" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="140437" e_stop="140631"/>
          <exon e_start="143789" e_stop="144284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCGCTATAATGTCCTTACCCGAACTCTCCATCAGCTTCCTATCCCTCGAACTCACCCAATATGGCATTTTTCCTAAACCCTGCCTCAAAACTTCATCATTTGGAGTTGTCACGGATGCAAGCATCGCCAATGCTACCTTAGCTCTCGTGATCAACTCATCAAGAACCGTTCCATTCTTAGTACTTAACGAAGTAAGCTCATCTAAACACGTAACGTGGTTTGTAAGCACACCACTTAGCCAACTTTGCACATTGGCATGCTCCAAACGACTTCTTTTATCAATTGCTGCAATTGAATCAGATACTAAATCAACTGACTGATCAAGAAGCTCAAGACAATCAGTTAAAGCCCCGTGTTGACGAATGTCATTGATCTGATTCTTGATTTTGCGAACCACTGGAATTGCATTGTTCATTTGATGGACATATTTAACTAGAAATTTCTTCAGAACAGTTACTCCATCTGATTCTGTTGTGACAATTTCAGAGACATAACTAAGGCAGAGTTGGGAACCTTGTGCACTTTTACACAGATTAGAATGTTTAATCTCAAATTGATATGGAGCAACAAGAAACACAACTAAGAAGAGAGCAACAAACAAAGTTACAACAAAAGTGAGGATATTGAAGCCGATTATGGGATTTTGTTTGTGTGTTTTTGTTAAGAAAGGTTGTAGAGGAGTAGCCATTCTTTTAGAAGTTTGTAACTCTGTCATGTGTTGGATGTTTTGGAATACTCACTTAAAATATGTGTAATTCATATACGCTGACGTATTTTAGGTGGTTTAACTCTAACGTATATAATAATGAATGCTTGAAAATACTCGCAAAAGTTTTCTTGCCAGTAATATGATAAATTTGACAAAAGAGGGAGAATTGATGTGACTTAACTTACTTAGTCCAAAGTAGGTAGGAGTTAGGATCATCTTGAAATTGTGTTAGTAGAACTTTGAGGTGAGATTATTAGAATCGATTGCATTCTTTCATTCTTAACTGAAGGTCGTAGATTTAAAGTGTTTCTTTCTTTAATAGATTTGAACTCGAACTAATCAAACTAATAAGTATTGAATACCTAATAACTACGAATAATCTCTCTTAGAAAAAAATTATAACTTGAGAATGAAGAGAAGTGGATGTCGAAGTATTCAAGTAAGATGAAGTCTGCTTCAAGTCTCATCATAGAACAATGAAGCATCAAACGAAGTTTCAAAATATACATTTGTGTTTTTGTATTTGTATAAAGTAAGAGAGAGAGACTGACAGAAGAGAATCGAGAGAGAGAGACTGGGAAGGGAGAGATGACTGAAAAAAGGAGAGTTGCGAGCGAGATTCTCGAAAGAGGGAGAGAGAGAGGGGGGAATGCAATTATATCTAGAAGTAAGTTCCTAATCGTAATTAATACAAATTGTAGCCGTGTTAGCTAGTTAACTAGTATATGTTTGTCTAACTGCGTAATTCCCCCAACTAAAAAATCGAAATAAATCAAAAGAAAAAGAAGAATAAACATGAAACTGCCAAAAGGTAACACAATGACTTTCATCTTGCATATTTTTATCATAACCACCACCCCACAACCATAAACATCAGGGAAAACCTAATATTACACATATCCTTTTTCAGAAAACTATAATTACATTAAAGCATCATCAGTTTCAGCTTTATCGCCAACATAAATATATATACGTATATTAACTTATGAACCCCTTAACTGAACTTATTGACGACTTAGTAGTAAGGAATGAGCCATGTAAATGCTTGTCACACTAGAGTTGTGTGTTATGCTTTAGACACTTAATCCCGGCTCTGCCCTGCTCATGTGGCACTTCATATGGATATATTACTACTACTTACTTTGAACTTTTTAAAGATGTCTTGTTACATAAACAAAGAGTAATTTTATATCACTCTAATCATATAATCCATCCACATACGCCACGTCAGTAGACCTCAACCATGATCCGCCCTGAATCAGCTTAGCCACAGTGAATGACATAGCTTCAGCGGGGTCAGTAATGACATGATAGCCAGGCCACTTGACACGCTTACTAGTACCAGCACCAGGTCCATTATTCATAAATTCACCATAATACAATGTCTTTAACGCAAAATCTCCGTGCCACTCAGCCCAACCCGATGGATCAATGAGACCACCCAAGTATGATTCCATCACTACAGTTCTTGAATATTTTTTCCATGGCCTACCAAGATATGTTGGGAATTCTTTCACGACTGGTTTTAGGTCAGGACTTGCTATTATATCACAAAACTGAATTGATGTCCCCGTGGCCTGATTTGGGTCCGTCCTGCCTTGTGCAGTCACCATGTTTTGCTGGTATTTACCCGGTTTTCTAGCTACGAGCTGGCATTTCTGGAATACAACTGCTGCATTACCGAATATGAAATCAATAGTCCCTGCAGAGATGGATTCAAGATTTGAACTTTTTAATACCGAGTTCAATAGAGAGTATAGCACATTTGAGGTAATCTACTTCACAAGTACCTGTCACGTAGGAGTCTCGATAGAATTGCCTTTGAGAATGTGCATAAAGGGTGTCTTGATAAGCATCGATACGACAACGATTTATGACAGACTTATCAGCTCCAACTCGAAGTGCAACAGCTTGGTGTTTAGCTGGTCCTGCTGTGTTCTGTATACATATGTCCTGTAGTATAAATCCTTTGCCAACTGCAGCTGCAATATGATGAAAATTCACGAGTATATACGTACACTTGTTCATTAATCAAATATGAACTACAAATAACACAATCCTTAATCCTAGGTCATGATGGCGGAGCAAGGATTTTCAGTAAGGGGGTTTGAAATATCAAAAGTATATATACGAAGAGGCCAAAGAATTCAACATCTACTATATATACATAAGTTATTTAAAGCCTACCAAGAGTGGCAGAGTGGAAGGTTGTTGATCCATCGACAACATTAAGGCTCCCAGTAATGATGGTAGCATACATGCCATCACCAATAATCATCAAATTCATTTTCCTGCTACTCACCTCAACATTCTCTTTATAAGTTCCCCTCTTTACATAAATTACATAACGCGTCTTACTCTTATCTGGTGCTGCAGCAACAGCTTCAGCAAGTGTTCGATATTTCCCTGTTCCATCTTTTGCCACCACTGCATTCGCTCCAATGTCCTTACCCGAACTCTCCATCAGCTTCCTATCCCTCGAACTCACCCAAGATGGCATTTTTCCTAAACCCGGCCTCAAAACTTCATCATTTGGAGTTGTCACAGACGCAAGCATCGCCAATGCTACCTTAGCTCTCGAGATCAACTCATCAAGATTCGTTCCATTTATCATAGCTTTAGTAAAGGAATCAAGCTCATCCAAGCACGTAACGTGGTTAGTAAGCACACCACTTAGCCAACTTTGCGCATTGGCATGCTCCGAACGACTTCTCTTATCAATTGCTGCAATTGAATCACATACTAAATCAACTGACAGATCAAGAAGCTCAAGACAATCAGTTAAAGCCCCTTGTTCACGAATGTCATTGATCTGATTCTTGATTTTGCGAACCACTGGAATTGCATTGTTCATTTGATGAACAGAGTAAACTAAAAATTTCTTCAGAATACTTAGTCCATCTGAATCAGATGTGACAATTTCATTGGATATTAAATCAGAAACATAACTGAGACAGAGTTGGGAATCTTGTGCAGTTTTACACAGATTAGAATGTTTAATCTCAAATTGATATGGAGCAACAAGAAACACAACTAAGAAGAGAGCAACAAACAAAGTTACAACAAAAGTGAGGATCTTGAAGCTGATTATGGAATTTTGTTTGTGTGTTTTTGTTAACAAAGGTTGTTGAGGAG</genome_strand>
        <mrna_strand>GCATTTGCTTTGATGTCTTTACCCGAACTCTCCATCAGCTTCCTATCCCTCGAACTCACCCAAGATGGCATTTTTCCTAAAACCGTCCTGAAAACATCCTCATTCTGAGTTGTTACAGACGCGAGCATCGCCAATGCTACCCTAGCTCTAGTGATCAACTCATCAAGAACTGTTCCATTCTTAGTACTTAACGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGCACGTAACGTGGTTAGTAAGCACACCACTTAGCCAACTTTGCGCATTGGCATGCCCCGAGTGACTTCTTTTATCAATTGCTACAATTGAATCAGATACTAAATCAACTGACAGATCAAGAAGCTCAAGACAATCAGTTAAAGCCCCTTGTTGACGAATGTCATTGATCTGATTCTTTATTTTGCGAACCACTGGAATTGCACTGTTCATTTGATGAACATATTTAACTAAGAATTTCTTCAGAATACTTAGTCCATCAGAACTTGATGTGACAATTTCATTGGACATTAAATCAGAGACATAACTAAGGCAGAGTTGGGAATCTTGTGCAGCCTTACATAGATTAGAATGTTCAATCTCAACTTGGTATGGAGCAACAAGAAACACAACTAAGAAGAGAGCAACAAAGAAAGTTATGACAAATGTGAGGATCTTGAAGCTGATTATTGGATTTTGTTTGTGAGTTTTTGTTAACAAAGGTTGGTGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469743" ref_strand="-" ref_description="SGN-E469743 [cSTB-14-A21]">
      <seq>aattcctcattctgagttgttacagatgcgagcatcgccaatgctactttagttctagtgatcaactcatcaagaactgttccattcttagtacttaacgaatcaaggcacgtaacgtggttagtaagcacaccacttagccaactttgcgcattggcatgctccaaacgacttcttttatcaattgctgcaattgaatcagatactaaatcaactgacagatcaagaagctcaagacaatcagttaaagccccttgttgacgaatgtcattgatctgattcttgattttgcgaaccactggaattgcattgttcatttgatgaacatatttaactaagaatttcttcagaatacttagtccatctgaatttgatgtgacaatttcattggacattaaatcagagacataactgaggcagagttgggaatcttgtgcagccttacatagattagaatgttcaatctcaacttggtatggagcaacaagaaacacaactaagaagagagcaacaaagaaagttatgacaaaagtgaggatcttcaagctgattattggattttgtttgtgagtttttgttaacaaaggttggtgaggagtagccattttagaagtttgcaactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="140230" stop="144612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140530" g_stop="140631" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140632" i_stop="143788" i_length="3157">
            <donor d_prob="0.766" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143789" g_stop="144312" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="625" r_length="523" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E469743" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469743" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="140530" e_stop="140631"/>
          <exon e_start="143789" e_stop="144312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCATCATTTGGAGTTGTCACGGATGCAAGCATCGCCAATGCTACCTTAGCTCTCGTGATCAACTCATCAAGAACCGTTCCATTCTTAGTACTTAACGAAGTAAGCTCATCTAAACACGTAACGTGGTTTGTAAGCACACCACTTAGCCAACTTTGCACATTGGCATGCTCCAAACGACTTCTTTTATCAATTGCTGCAATTGAATCAGATACTAAATCAACTGACTGATCAAGAAGCTCAAGACAATCAGTTAAAGCCCCGTGTTGACGAATGTCATTGATCTGATTCTTGATTTTGCGAACCACTGGAATTGCATTGTTCATTTGATGGACATATTTAACTAGAAATTTCTTCAGAACAGTTACTCCATCTGATTCTGTTGTGACAATTTCAGAGACATAACTAAGGCAGAGTTGGGAACCTTGTGCACTTTTACACAGATTAGAATGTTTAATCTCAAATTGATATGGAGCAACAAGAAACACAACTAAGAAGAGAGCAACAAACAAAGTTACAACAAAAGTGAGGATATTGAAGCCGATTATGGGATTTTGTTTGTGTGTTTTTGTTAAGAAAGGTTGTAGAGGAGTAGCCATTCTTTTAGAAGTTTGTAACTCTGTCATGTGTTGGATGTTTTGGAATACTCACTTAAAATATGTGTAATTCATATACGCTGACGTATTTTAGGTGGTTTAACTCTAACGTATATAATAATGAATGCTTGAAAATACTCGCAAAAGTTTTCTTGCCAGTAATATGATAAATTTGACAAAAGAGGGAGAATTGATGTGACTTAACTTACTTAGTCCAAAGTAGGTAGGAGTTAGGATCATCTTGAAATTGTGTTAGTAGAACTTTGAGGTGAGATTATTAGAATCGATTGCATTCTTTCATTCTTAACTGAAGGTCGTAGATTTAAAGTGTTTCTTTCTTTAATAGATTTGAACTCGAACTAATCAAACTAATAAGTATTGAATACCTAATAACTACGAATAATCTCTCTTAGAAAAAAATTATAACTTGAGAATGAAGAGAAGTGGATGTCGAAGTATTCAAGTAAGATGAAGTCTGCTTCAAGTCTCATCATAGAACAATGAAGCATCAAACGAAGTTTCAAAATATACATTTGTGTTTTTGTATTTGTATAAAGTAAGAGAGAGAGACTGACAGAAGAGAATCGAGAGAGAGAGACTGGGAAGGGAGAGATGACTGAAAAAAGGAGAGTTGCGAGCGAGATTCTCGAAAGAGGGAGAGAGAGAGGGGGGAATGCAATTATATCTAGAAGTAAGTTCCTAATCGTAATTAATACAAATTGTAGCCGTGTTAGCTAGTTAACTAGTATATGTTTGTCTAACTGCGTAATTCCCCCAACTAAAAAATCGAAATAAATCAAAAGAAAAAGAAGAATAAACATGAAACTGCCAAAAGGTAACACAATGACTTTCATCTTGCATATTTTTATCATAACCACCACCCCACAACCATAAACATCAGGGAAAACCTAATATTACACATATCCTTTTTCAGAAAACTATAATTACATTAAAGCATCATCAGTTTCAGCTTTATCGCCAACATAAATATATATACGTATATTAACTTATGAACCCCTTAACTGAACTTATTGACGACTTAGTAGTAAGGAATGAGCCATGTAAATGCTTGTCACACTAGAGTTGTGTGTTATGCTTTAGACACTTAATCCCGGCTCTGCCCTGCTCATGTGGCACTTCATATGGATATATTACTACTACTTACTTTGAACTTTTTAAAGATGTCTTGTTACATAAACAAAGAGTAATTTTATATCACTCTAATCATATAATCCATCCACATACGCCACGTCAGTAGACCTCAACCATGATCCGCCCTGAATCAGCTTAGCCACAGTGAATGACATAGCTTCAGCGGGGTCAGTAATGACATGATAGCCAGGCCACTTGACACGCTTACTAGTACCAGCACCAGGTCCATTATTCATAAATTCACCATAATACAATGTCTTTAACGCAAAATCTCCGTGCCACTCAGCCCAACCCGATGGATCAATGAGACCACCCAAGTATGATTCCATCACTACAGTTCTTGAATATTTTTTCCATGGCCTACCAAGATATGTTGGGAATTCTTTCACGACTGGTTTTAGGTCAGGACTTGCTATTATATCACAAAACTGAATTGATGTCCCCGTGGCCTGATTTGGGTCCGTCCTGCCTTGTGCAGTCACCATGTTTTGCTGGTATTTACCCGGTTTTCTAGCTACGAGCTGGCATTTCTGGAATACAACTGCTGCATTACCGAATATGAAATCAATAGTCCCTGCAGAGATGGATTCAAGATTTGAACTTTTTAATACCGAGTTCAATAGAGAGTATAGCACATTTGAGGTAATCTACTTCACAAGTACCTGTCACGTAGGAGTCTCGATAGAATTGCCTTTGAGAATGTGCATAAAGGGTGTCTTGATAAGCATCGATACGACAACGATTTATGACAGACTTATCAGCTCCAACTCGAAGTGCAACAGCTTGGTGTTTAGCTGGTCCTGCTGTGTTCTGTATACATATGTCCTGTAGTATAAATCCTTTGCCAACTGCAGCTGCAATATGATGAAAATTCACGAGTATATACGTACACTTGTTCATTAATCAAATATGAACTACAAATAACACAATCCTTAATCCTAGGTCATGATGGCGGAGCAAGGATTTTCAGTAAGGGGGTTTGAAATATCAAAAGTATATATACGAAGAGGCCAAAGAATTCAACATCTACTATATATACATAAGTTATTTAAAGCCTACCAAGAGTGGCAGAGTGGAAGGTTGTTGATCCATCGACAACATTAAGGCTCCCAGTAATGATGGTAGCATACATGCCATCACCAATAATCATCAAATTCATTTTCCTGCTACTCACCTCAACATTCTCTTTATAAGTTCCCCTCTTTACATAAATTACATAACGCGTCTTACTCTTATCTGGTGCTGCAGCAACAGCTTCAGCAAGTGTTCGATATTTCCCTGTTCCATCTTTTGCCACCACTGCATTCGCTCCAATGTCCTTACCCGAACTCTCCATCAGCTTCCTATCCCTCGAACTCACCCAAGATGGCATTTTTCCTAAACCCGGCCTCAAAACTTCATCATTTGGAGTTGTCACAGACGCAAGCATCGCCAATGCTACCTTAGCTCTCGAGATCAACTCATCAAGATTCGTTCCATTTATCATAGCTTTAGTAAAGGAATCAAGCTCATCCAAGCACGTAACGTGGTTAGTAAGCACACCACTTAGCCAACTTTGCGCATTGGCATGCTCCGAACGACTTCTCTTATCAATTGCTGCAATTGAATCACATACTAAATCAACTGACAGATCAAGAAGCTCAAGACAATCAGTTAAAGCCCCTTGTTCACGAATGTCATTGATCTGATTCTTGATTTTGCGAACCACTGGAATTGCATTGTTCATTTGATGAACAGAGTAAACTAAAAATTTCTTCAGAATACTTAGTCCATCTGAATCAGATGTGACAATTTCATTGGATATTAAATCAGAAACATAACTGAGACAGAGTTGGGAATCTTGTGCAGTTTTACACAGATTAGAATGTTTAATCTCAAATTGATATGGAGCAACAAGAAACACAACTAAGAAGAGAGCAACAAACAAAGTTACAACAAAAGTGAGGATCTTGAAGCTGATTATGGAATTTTGTTTGTGTGTTTTTGTTAACAAAGGTTGTTGAGGAGTAGCCATTTTAGAAGTTCGCAAACTATG</genome_strand>
        <mrna_strand>AATTCCTCATTCTGAGTTGTTACAGATGCGAGCATCGCCAATGCTACTTTAGTTCTAGTGATCAACTCATCAAGAACTGTTCCATTCTTAGTACTTAACGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGCACGTAACGTGGTTAGTAAGCACACCACTTAGCCAACTTTGCGCATTGGCATGCTCCAAACGACTTCTTTTATCAATTGCTGCAATTGAATCAGATACTAAATCAACTGACAGATCAAGAAGCTCAAGACAATCAGTTAAAGCCCCTTGTTGACGAATGTCATTGATCTGATTCTTGATTTTGCGAACCACTGGAATTGCATTGTTCATTTGATGAACATATTTAACTAAGAATTTCTTCAGAATACTTAGTCCATCTGAATTTGATGTGACAATTTCATTGGACATTAAATCAGAGACATAACTGAGGCAGAGTTGGGAATCTTGTGCAGCCTTACATAGATTAGAATGTTCAATCTCAACTTGGTATGGAGCAACAAGAAACACAACTAAGAAGAGAGCAACAAAGAAAGTTATGACAAAAGTGAGGATCTTCAAGCTGATTATTGGATTTTGTTTGTGAGTTTTTGTTAACAAAGGTTGGTGAGGAGTAGCCATTTTAGAAGTTTGC-AACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744555" ref_strand="+" ref_description="SGN-E744555 [GI|1256262]">
      <seq>atggctactcctcaacaacctttgttaacaaaaacacacaaacaaaattccataatcagcttcaagatcctcacttttgttgtaactttgtttgttgctctcttcttagttgtgtttcttgttgctccatatcaatttgagattaaacattctaatctgtgtaaaactgcacaagattcccaactctgtctcagttatgtttctgatttaatatccaatgaaattgtcacatctgattcagatggactaagtattctgaagaaatttttagtttactctgttcatcaaatgaacaatgcaattccagtggttcgcaaaatcaagaatcagatcaatgacattcgtgaacaaggggctttaactgattgtcttgagcttcttgatctgtcagttgatttagtatgtgattcaattgcagcaattgataagagaagtcgttcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgatgagttgatctcgagagctaaggtagcattggcgatgcttgcgtctgtgacaactccaaatgatgaagttttgaggccgggtttaggaaaaatgccatcttgggtgagttcgagggataggaagctgatggagagttcgggtaaggacattggagcgaatgcagtggtggcaaaagatggaacagggaaatatcgaacacttgctgaagctgttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtgagtagcaggaaaatgaatttgatgattattggtgatggcatgtatgctaccatcattactgggagccttaatgttgtcgatggatcaacaaccttccactctgccactcttgctgcagttggcaaaggatttatactacaggacatatgtatacagaacacagcaggaccagctaaacaccaagctgttgcacttcgagttggagctgataagtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacagggactattgatttcatatttggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttttgtgatataatagcaagtcctgacctaaaaccagtcgtgaaagaattcccaacatatcttggtaggccatggaaaaaatattcaagaactgtagtgatggaatcatacttgggtggtctcattgatccatcgggttgggctgagtggcacggagattttgcgttaaagacattgtattatggtgaatttatgaataatggacctggtgctggtactagtaagcgtgtcaagtggcctggctatcattgcattactgaccccgctgaagctatgtcattcactgtggctaagctgattcagggcggatcatggttgaggtctactgacgtggcgtatgtggatggattatatgattagagtgatataaaattactctttgtttatgtaacaagacatctttaaaaagttcaaagtaagtagtagtaatatatccattgaagtgccacatgagcagggcagagccgggattaagtgtcgaaagcataacacacaactctagtgtgacaagcatttacatggctcattccttactactaagtcgtcaataagttcagttaaggggttcataagttaatatacgtatatatatttatgttggcgataaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatatgtgtaatattaggttttccctgatgtttatggttgtggggtggtggttatgataaaaatatgcaagatgaaagtcattgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="144591" stop="141663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144291" g_stop="143337" g_length="955"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="955" r_length="955" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143336" i_stop="143132" i_length="205">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143131" g_stop="142940" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1147" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142939" i_stop="142852" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142851" g_stop="141963" g_length="889"/>
          <reference_exon_boundary r_type="cDNA" r_start="1148" r_stop="2037" r_length="890" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E744555" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2036</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144291" e_stop="143337"/>
          <exon e_start="143131" e_stop="142940"/>
          <exon e_start="142851" e_stop="141963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGATGAGTTGATCTCGAGAGCTAAGGTAGCATTGGCGATGCTTGCGTCTGTGACAACTCCAAATGATGAAGTTTTGAGGCCGGGTTTAGGAAAAATGCCATCTTGGGTGAGTTCGAGGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTGGAGCGAATGCAGTGGTGGCAAAAGATGGAACAGGGAAATATCGAACACTTGCTGAAGCTGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAGGAAAATGAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTGGTAGGCTTTAAATAACTTATGTATATATAGTAGATGTTGAATTCTTTGGCCTCTTCGTATATATACTTTTGATATTTCAAACCCCCTTACTGAAAATCCTTGCTCCGCCATCATGACCTAGGATTAAGGATTGTGTTATTTGTAGTTCATATTTGATTAATGAACAAGTGTACGTATATACTCGTGAATTTTCATCATATTGCAGCTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTCAAATCTTGAATCCATCTCTGCAGGGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGTTGGGCTGAGTGGCACGGAGATTTTGCGTTAAAGACATTGTATTATGGTGAATTTATGAATAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGACGTGGCGTATGTGGATGGATTATATGATTAGAGTGATATAAAATTACTCTTTGTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGG--ATATGTGTAATATTAGGTTTTCCCTGATGTTTATGGTTGTGGGGTGGTGGTTATGATAAAAATATGCAAGATGAAAGTCATTGTGTT</genome_strand>
        <mrna_strand>ATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGATGAGTTGATCTCGAGAGCTAAGGTAGCATTGGCGATGCTTGCGTCTGTGACAACTCCAAATGATGAAGTTTTGAGGCCGGGTTTAGGAAAAATGCCATCTTGGGTGAGTTCGAGGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTGGAGCGAATGCAGTGGTGGCAAAAGATGGAACAGGGAAATATCGAACACTTGCTGAAGCTGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAGGAAAATGAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTG.............................................................................................................................................................................................................CTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GGACTATTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGTTGGGCTGAGTGGCACGGAGATTTTGCGTTAAAGACATTGTATTATGGTGAATTTATGAATAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATTGCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGACGTGGCGTATGTGGATGGATTATATGATTAGAGTGATATAAAATTACTCTTTGTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCAT-TGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCGAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATATGTGTAATATTAGGTTTTCCCTGATGTTTATGGTTGTGGGGTGGTGGTTATGATAAAAATATGCAAGATGAAAGTCATTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744836" ref_strand="+" ref_description="SGN-E744836 [GI|398717]">
      <seq>cgaacttctaaaatggctactcctcaacaacctttgttaacaaaaacacacaaacaaaattccataatcagcttcaagatcctcacttttgttgtaactttgtttgttgctctcttcttagttgtgtttcttgttgctccatatcaatttgagattaaacattctaatctgtgtaaaactgcacaagattcccaactctgtctcagttatgtttctgatttaatatccaatgaaattgtcacatctgattcagatggactaagtattctgaagaaatttttagtttactctgttcatcaaatgaacaatgcaattccagtggttcgcaaaatcaagaatcagatcaatgacattcgtgaacaaggggctttaactgattgtcttgagcttcttgatctgtcagttgatttagtatgtgattcaattgcagcaattgataagagaagtcgttcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgatgagttgatctcgagagctaaggtagcattggcgatgcttgcgtctgtgacaactccaaatgatgaagttttgaggccgggtttaggaaaaatgccatcttgggtgagttcgagggataggaagctgatggagagttcgggtaaggacattggagcgaatgcagtggtggcaaaagatggaacagggaaatatcgaacacttgctgaagctgttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtgagtagcaggaaaatgaatttgatgattattggtgatggcatgtatgctaccatcattactgggagccttaatgttgtcgatggatcaacaaccttccactctgccactcttgctgcagttggcaaaggatttatactacaggacatatgtatacagaacacagcaggaccagctaaacaccaagctgttgcacttcgagttggagctgataagtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacagggactattgatttcatattcggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttttgtgatataatagcaagtcctgacctaaaaccagtcgtgaaagaattcccaacatatcttggtaggccatggaaaaaatattcaagaactgtagtgatggaatcatacttgggtggtctcattgatccatcgggttgggctgagtggcacggagattttgcgttaaagacattgtattatggtgaatttatgaataatggacctggtgctggtactagtaagcgtgtcaagtggcctggctatcatgtcattactgaccccgctgaagctatgtcattcactgtggctaagctgattcagggcggatcatggttgaggtctactgacgtggcgtatgtggatggattatatgattagagtgatataaaattactctttgtttatgtaacaagacatctttaaaaagttcaaagtaagtagtagtaatatatccatatgaagtgccacatgagcagggcagagccgggattaagtgtctaaagcataacacacaactctagtgtgacaagcatttacatggctcattccttactactaagtcgtcaataagttcagttaaggggttcataagttaatatacgtatatatatttatgttggcgataaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgtgtaatattaggttttccctgatgtttatggttgtggggtggtggttatgataaaaatatgcaagatgaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="144603" stop="141671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144303" g_stop="143337" g_length="967"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="967" r_length="967" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143336" i_stop="143132" i_length="205">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143131" g_stop="142940" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="968" r_stop="1159" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142939" i_stop="142852" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142851" g_stop="141971" g_length="881"/>
          <reference_exon_boundary r_type="cDNA" r_start="1160" r_stop="2040" r_length="881" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E744836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2040</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144303" e_stop="143337"/>
          <exon e_start="143131" e_stop="142940"/>
          <exon e_start="142851" e_stop="141971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACTTCTAAAATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGATGAGTTGATCTCGAGAGCTAAGGTAGCATTGGCGATGCTTGCGTCTGTGACAACTCCAAATGATGAAGTTTTGAGGCCGGGTTTAGGAAAAATGCCATCTTGGGTGAGTTCGAGGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTGGAGCGAATGCAGTGGTGGCAAAAGATGGAACAGGGAAATATCGAACACTTGCTGAAGCTGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAGGAAAATGAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTGGTAGGCTTTAAATAACTTATGTATATATAGTAGATGTTGAATTCTTTGGCCTCTTCGTATATATACTTTTGATATTTCAAACCCCCTTACTGAAAATCCTTGCTCCGCCATCATGACCTAGGATTAAGGATTGTGTTATTTGTAGTTCATATTTGATTAATGAACAAGTGTACGTATATACTCGTGAATTTTCATCATATTGCAGCTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTCAAATCTTGAATCCATCTCTGCAGGGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGTTGGGCTGAGTGGCACGGAGATTTTGCGTTAAAGACATTGTATTATGGTGAATTTATGAATAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGACGTGGCGTATGTGGATGGATTATATGATTAGAGTGATATAAAATTACTCTTTGTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGTGTAATATTAGGTTTTCCCTGATGTTTATGGTTGTGGGGTGGTGGTTATGATAAAAATATGCAAGATGAAAGTC</genome_strand>
        <mrna_strand>CGAACTTCTAAAATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGATGAGTTGATCTCGAGAGCTAAGGTAGCATTGGCGATGCTTGCGTCTGTGACAACTCCAAATGATGAAGTTTTGAGGCCGGGTTTAGGAAAAATGCCATCTTGGGTGAGTTCGAGGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTGGAGCGAATGCAGTGGTGGCAAAAGATGGAACAGGGAAATATCGAACACTTGCTGAAGCTGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAGGAAAATGAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTG.............................................................................................................................................................................................................CTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGTTGGGCTGAGTGGCACGGAGATTTTGCGTTAAAGACATTGTATTATGGTGAATTTATGAATAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGACGTGGCGTATGTGGATGGATTATATGATTAGAGTGATATAAAATTACTCTTTGTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGTGTAATATTAGGTTTTCCCTGATGTTTATGGTTGTGGGGTGGTGGTTATGATAAAAATATGCAAGATGAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744835" ref_strand="+" ref_description="SGN-E744835 [GI|19288]">
      <seq>ctttaactgattgtcttgagcttcttgatctgtcagttgatttagtatgtgattcaattgcagcaattgataagagaagtcgttcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgatgagttgatctcgagagctaaggtagcattggcgatgcttgcgtctgtgacaactccaaatgatgaagttttgaggccgggtttaggaaaaatgccatcttgggtgagttcgagggataggaagctgatggagagttcgggtaaggacattggagcgaatgcagtggtggcaaaagatggaacagggaaatatcgaacacttgctgaagctgttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtgagtagcaggaaaatgaatttgatgattattggtgatggcatgtatgctaccatcattactgggagccttaatgttgtcgatggatcaacaaccttccactctgccactcttgctgcagttggcaaaggatttatactacaggacatatgtatacagaacacagcaggaccagctaaacaccaagctgttgcacttcgagttggagctgataagtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcagagctcctacgtgacagggactattgatttcatattcggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttttgtgatataatagcaagtcctgacctaaaaccagtcgtgaaagaattcccaacatatcttggtaggccatggaaaaaatattcaagaactgtagtgatggaatcatcattgggtggtctcattgatccatcgggttgggctgagtggcacggagattttgcgttaaagacattgtattatggtgaatttatgaataatggacctggtgctggtactagtaagcgtgtcaagtggcctggctatcatgtcattactgaccccgctgaagctatgtcattcactgtggctaagctgattcagggcggatcatggttgaggtctactgacgtggcgtatgtggatggattatatgattatagtgatataaaattactctttgtttatgtaacaagacatctttaaaaagttcaaagtaagtagtagtaatatatccatatgaagtgccacatgagcagggcagagcggattaagtgtctaaagcataacacacaactctagtgtgacaagcatttacatggctcattccttactactaagtcgtcaataagttcagttaaggggttcataagttaatatacgtatatatatttatgttggcgataaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaggatatgtgtaatattaggttttccctgatgtttatggttgtggggtggtggttatgataaaaatatgcaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="144236" stop="141677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143936" g_stop="143337" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143336" i_stop="143132" i_length="205">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143131" g_stop="142940" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="792" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142939" i_stop="142852" i_length="88">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142851" g_stop="141977" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="1665" r_length="873" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E744835" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1667</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143936" e_stop="143337"/>
          <exon e_start="143131" e_stop="142940"/>
          <exon e_start="142851" e_stop="141977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGATGAGTTGATCTCGAGAGCTAAGGTAGCATTGGCGATGCTTGCGTCTGTGACAACTCCAAATGATGAAGTTTTGAGGCCGGGTTTAGGAAAAATGCCATCTTGGGTGAGTTCGAGGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTGGAGCGAATGCAGTGGTGGCAAAAGATGGAACAGGGAAATATCGAACACTTGCTGAAGCTGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAGGAAAATGAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTGGTAGGCTTTAAATAACTTATGTATATATAGTAGATGTTGAATTCTTTGGCCTCTTCGTATATATACTTTTGATATTTCAAACCCCCTTACTGAAAATCCTTGCTCCGCCATCATGACCTAGGATTAAGGATTGTGTTATTTGTAGTTCATATTTGATTAATGAACAAGTGTACGTATATACTCGTGAATTTTCATCATATTGCAGCTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATC-GAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTCAAATCTTGAATCCATCTCTGCAGGGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGTTGGGCTGAGTGGCACGGAGATTTTGCGTTAAAGACATTGTATTATGGTGAATTTATGAATAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGACGTGGCGTATGTGGATGGATTATATGATTAGAGTGATATAAAATTACTCTTTGTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGTGTAATATTAGGTTTTCCCTGATGTTTATGGTTGTGGGGTGGTGGTTATGATAAAAATATGCAAGATG</genome_strand>
        <mrna_strand>CTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGATGAGTTGATCTCGAGAGCTAAGGTAGCATTGGCGATGCTTGCGTCTGTGACAACTCCAAATGATGAAGTTTTGAGGCCGGGTTTAGGAAAAATGCCATCTTGGGTGAGTTCGAGGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTGGAGCGAATGCAGTGGTGGCAAAAGATGGAACAGGGAAATATCGAACACTTGCTGAAGCTGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAGGAAAATGAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTG.............................................................................................................................................................................................................CTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCAGAG-CTCCTACGTGACAG........................................................................................GGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATCATTGGGTGGTCTCATTGATCCATCGGGTTGGGCTGAGTGGCACGGAGATTTTGCGTTAAAGACATTGTATTATGGTGAATTTATGAATAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGACGTGGCGTATGTGGATGGATTATATGATTATAGTGATATAAAATTACTCTTTGTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAG-C-GGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGTGTAATATTAGGTTTTCCCTGATGTTTATGGTTGTGGGGTGGTGGTTATGATAAAAATATGCAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223942" ref_strand="+" ref_description="SGN-E223942 [cLEL-19-J19](-)">
      <seq>agacattgtattatggtgaatttatgaataatggacctggtgctggtactagtaagcgtgtcaagtggcctggctatcatgtcattactgaccccgctgaagctatgtcattcactgtggctaagctgattcagggcggatcatggttgaggtctactgacgtggcgtatgtggatggattatatgattagagtgatataaaattactctttgtttatgtaacaagacatctttaaaaagttcaaagtaagtagtagtaatatatccatatgaagtgccacatgagcagggcagagccgggattaagtgtctaaagcataacacacaactctagtgtgacaagcatttacatggctcattccttactactaagtcgtcaataagttcagttaaggggttcataagttaatatacgtatatatatttatgttggcgataaagctgaaactgatgatgctttaatgtaattatagttttctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="142836" stop="141747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142536" g_stop="142040" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E223942" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142536" e_stop="142040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATTGTATTATGGTGAATTTATGAATAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGACGTGGCGTATGTGGATGGATTATATGATTAGAGTGATATAAAATTACTCTTTGTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGTGTAA</genome_strand>
        <mrna_strand>AGACATTGTATTATGGTGAATTTATGAATAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGACGTGGCGTATGTGGATGGATTATATGATTAGAGTGATATAAAATTACTCTTTGTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223812" ref_strand="+" ref_description="SGN-E223812 [cLEL-19-J19](-)">
      <seq>attatatgattagagtgatataaaattactctttgtttatgtaacaagacatctttaaaaagttcaaagtaagtagtagtaatatatccatatgaagtgccacatgagcagggcagagccgggattaagtgtctaaagcataacacacaactctagtgtgacaagcatttacatggctcattccttactactaagtcgtcaataagttcagttaaggggttcataagttaatatacgtatatatatttatgttggcgataaagctgaaactgatgatgctttaatgtaattatagttttctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="142658" stop="141747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142358" g_stop="142040" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E223812" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142358" e_stop="142040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATATGATTAGAGTGATATAAAATTACTCTTTGTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGTGTAA</genome_strand>
        <mrna_strand>ATTATATGATTAGAGTGATATAAAATTACTCTTTGTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369846" ref_strand="+" ref_description="SGN-E369846 [TUS-25-O17](-)">
      <seq>ttaaaaagttcaaagtcagtagtagtaatatatccatatgaagtgccacatgagcagggcagagccgggattaagtgtctaaagcataacacacaactctagtgtgacaagcatttacatggctcattccttactactaagtcgtcaataagttcagttaaggggttcataagttaatatacgtatatatatttatgttggcgataaagctgaaactgatgatgctttaatgtaattatagttttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="142604" stop="141747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142304" g_stop="142046" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E369846" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142304" e_stop="142046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATAT</genome_strand>
        <mrna_strand>TTAAAAAGTTCAAAGTCAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710552" ref_strand="+" ref_description="SGN-E710552 [FA55DB04]">
      <seq>gtaatttatgtaaagaggggaacttataaagagaatgttgaggtgagtagcaggaaaatgaatttgatgattattggtgatggcatgtatgctaccatcattactgggagccttaatgttgtcgatggatcaacaaccttccactctgccactcttgctgcagttggcaaaggatttatactacaggacatatgtatacagaacacagcaggaccagctaaacaccaagctgttgcacttcgagttggagctgataagtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacagggactattgatttcatattcggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttttgtgatataatagcaagtcctgacctaaaaccagtcgtgaaagaattcccaacatatcttggtaggccatggaaaaaatattcaagaactgtagtgatggaatcatacttgggtggtctcattgatccatcgggttgggctgagtggcacggagattttgcgttaaagacattgtattatggtgaatttatgaataatggacctgccgctggtactagtaagcgtgtcaagtggcctggctatcatgtcattactgaccccgctgaagctatgtcattcactgtggctaagctgattcagggcggatcatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="143793" stop="142090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143493" g_stop="143337" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143336" i_stop="143132" i_length="205">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143131" g_stop="142940" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="349" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142939" i_stop="142852" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142851" g_stop="142390" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="811" r_length="462" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E710552" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143493" e_stop="143337"/>
          <exon e_start="143131" e_stop="142940"/>
          <exon e_start="142851" e_stop="142390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAGGAAAATGAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTGGTAGGCTTTAAATAACTTATGTATATATAGTAGATGTTGAATTCTTTGGCCTCTTCGTATATATACTTTTGATATTTCAAACCCCCTTACTGAAAATCCTTGCTCCGCCATCATGACCTAGGATTAAGGATTGTGTTATTTGTAGTTCATATTTGATTAATGAACAAGTGTACGTATATACTCGTGAATTTTCATCATATTGCAGCTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTCAAATCTTGAATCCATCTCTGCAGGGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGTTGGGCTGAGTGGCACGGAGATTTTGCGTTAAAGACATTGTATTATGGTGAATTTATGAATAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGT</genome_strand>
        <mrna_strand>GTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAGGAAAATGAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTG.............................................................................................................................................................................................................CTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGTTGGGCTGAGTGGCACGGAGATTTTGCGTTAAAGACATTGTATTATGGTGAATTTATGAATAATGGACCTGCCGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318874" ref_strand="+" ref_description="SGN-E318874 [cTOB-11-I9]">
      <seq>actcttgctgcagttggcaaaggatttatactacaggacatatgtatacagaacacagcaggaccagctaaacaccaagctgttgcacttcgagttggagctgataagtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacagggactattgatttcatattcggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttttgtgatataatagcaagtcctgacctaaaaccagtcgtgaaagaattcccaacatatcttggtaggccatggaaaaaatattcaagaactgtagtgatggaatcatacttgggtggtctcattgatctcacgggttgggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="143432" stop="142261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143343" g_stop="143337" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143336" i_stop="143132" i_length="205">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143131" g_stop="142940" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="199" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142939" i_stop="142852" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142851" g_stop="142561" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="490" r_length="291" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E318874" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143343" e_stop="143337"/>
          <exon e_start="143131" e_stop="142940"/>
          <exon e_start="142851" e_stop="142561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTGGTAGGCTTTAAATAACTTATGTATATATAGTAGATGTTGAATTCTTTGGCCTCTTCGTATATATACTTTTGATATTTCAAACCCCCTTACTGAAAATCCTTGCTCCGCCATCATGACCTAGGATTAAGGATTGTGTTATTTGTAGTTCATATTTGATTAATGAACAAGTGTACGTATATACTCGTGAATTTTCATCATATTGCAGCTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTCAAATCTTGAATCCATCTCTGCAGGGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGTTGGGCTG</genome_strand>
        <mrna_strand>ACTCTTG.............................................................................................................................................................................................................CTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCTCACGGGTTGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262363" ref_strand="+" ref_description="SGN-E262363 [cLEG-56-C21]">
      <seq>taggaaaaatgccatcttgggtgagttcgagggataggaagctgatggagagttcgggtaaggacattggagcgaatgcagtggtggcaaaagatggaacagggaaatatcgaacacttgctgaagctgttgctgcagcaccagataagagtaagacgcgttatgtaatttatgtaaagaggggaacttataaagagaatgttgaggtgagtagcaggaaaatgaatttgatgattattggtgatggcatgtatgctaccatcattactgggagccttaatgttgtcgatggatcaacaaccttccactctgccactcttgctgcagttggcaaaggatttatactacaggacatatgtatacagaacacagcaggaccagctaaacaccaagctgttgcacttcgagttggagctgataagtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacagggactattgatttcatattcggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggacccaaatcaggccacggggacatcaattcagttttgtgatataatagcaagtcctgacctaaaaccagtcgtgaaaaattcccaacatatcttggtaggccatggaaaaaaatattcaagaactgtagtgatggaatcatacttgggtggtctcattgatccatcgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="143957" stop="142269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143657" g_stop="143337" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143336" i_stop="143132" i_length="205">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143131" g_stop="142940" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="513" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142939" i_stop="142852" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142851" g_stop="142568" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="797" r_length="284" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E262363" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143657" e_stop="143337"/>
          <exon e_start="143131" e_stop="142940"/>
          <exon e_start="142851" e_stop="142568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAAAAATGCCATCTTGGGTGAGTTCGAGGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTGGAGCGAATGCAGTGGTGGCAAAAGATGGAACAGGGAAATATCGAACACTTGCTGAAGCTGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAGGAAAATGAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTGGTAGGCTTTAAATAACTTATGTATATATAGTAGATGTTGAATTCTTTGGCCTCTTCGTATATATACTTTTGATATTTCAAACCCCCTTACTGAAAATCCTTGCTCCGCCATCATGACCTAGGATTAAGGATTGTGTTATTTGTAGTTCATATTTGATTAATGAACAAGTGTACGTATATACTCGTGAATTTTCATCATATTGCAGCTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTCAAATCTTGAATCCATCTCTGCAGGGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGG-AAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGT</genome_strand>
        <mrna_strand>TAGGAAAAATGCCATCTTGGGTGAGTTCGAGGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTGGAGCGAATGCAGTGGTGGCAAAAGATGGAACAGGGAAATATCGAACACTTGCTGAAGCTGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAGGAAAATGAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTG.............................................................................................................................................................................................................CTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAA-AATTCCCAACATATCTTGGTAGGCCATGGAAAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247296" ref_strand="+" ref_description="SGN-E247296 [cLEF-46-I22]">
      <seq>gaatttgatgattattggtgatggcatgtatgctaccatcattactgggagccttaatgttgtcgatggatcaacaaccttccactctgccactcttgctgcagttggcaaaggatttatactacaggacatatgtatacagaacacagcaggaccagctaaacaccaagctgttgcacttcgagttggagctgataagtctgtcataaatcgttgtcgtatcgatgcttatcaagacaccctttatgcacattctcaaaggcaattctatcgagactcctacgtgacagggactattgatttcatattcggtaatgcagcagttgtattccagaaatgccagctcgtagctagaaaaccgggtaaataccagcaaaacatggtgactgcacaaggcaggacggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="143734" stop="142436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143434" g_stop="143337" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143336" i_stop="143132" i_length="205">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143131" g_stop="142940" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="290" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142939" i_stop="142852" i_length="88">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142851" g_stop="142736" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="406" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E247296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143434" e_stop="143337"/>
          <exon e_start="143131" e_stop="142940"/>
          <exon e_start="142851" e_stop="142736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTGGTAGGCTTTAAATAACTTATGTATATATAGTAGATGTTGAATTCTTTGGCCTCTTCGTATATATACTTTTGATATTTCAAACCCCCTTACTGAAAATCCTTGCTCCGCCATCATGACCTAGGATTAAGGATTGTGTTATTTGTAGTTCATATTTGATTAATGAACAAGTGTACGTATATACTCGTGAATTTTCATCATATTGCAGCTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTCAAATCTTGAATCCATCTCTGCAGGGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGAC</genome_strand>
        <mrna_strand>GAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTG.............................................................................................................................................................................................................CTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG........................................................................................GGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273295" ref_strand="+" ref_description="SGN-E273295 [cLEM-24-H12]">
      <seq>ttcttagttgtgtttcttgttgctccatatcaatttgagattaaacattctaatctgtgtaaaactgcacaagattcccaactctgtctcagttatgtttctgatttaatatccaatgaaattgtcacatctgattcagatggactaagtattctgaagaaatttttagtttactctgttcatcaaatgaacaatgcaattccagtggttcgcaaaatcaagaatcagatcaatgacattcgtgaacaaggggctttaactgattgtcttgagcttcttgatctgtcagttgatttagtatgtgattcaattgcagcaattgataagagaagtcgttcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgatgagttgatctcgagagctaaggtagcattggcgatgcttgcgtctgtgacaactccaaatgatgaagttttgaggccgggtttaggaaaaatgccatcttgggtgagttcgagggataggaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="144489" stop="143312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144189" g_stop="143612" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E273295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144189" e_stop="143612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGATGAGTTGATCTCGAGAGCTAAGGTAGCATTGGCGATGCTTGCGTCTGTGACAACTCCAAATGATGAAGTTTTGAGGCCGGGTTTAGGAAAAATGCCATCTTGGGTGAGTTCGAGGGATAGGAAGCTGAT</genome_strand>
        <mrna_strand>TTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGATGAGTTGATCTCGAGAGCTAAGGTAGCATTGGCGATGCTTGCGTCTGTGACAACTCCAAATGATGAAGTTTTGAGGCCGGGTTTAGGAAAAATGCCATCTTGGGTGAGTTCGAGGGATAGGAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271195" ref_strand="+" ref_description="SGN-E271195 [cLEM-5-K19]">
      <seq>caacctttgttaacaaaaacacacaaacaaaattccataatcagcttcaagatcctcacttttgttgtaactttgtttgttgctctcttcttagttgtgtttcttgttgctccatatcaatttgagattaaacattctaatctgtgtaaaactgcacaagattcccaactctgtctcagttatgtttctgatttaatatccaatgaaattgtcacatctgattcagatggactaagtattctgaagaaatttttagtttactctgttcatcaaatgaacaatgcaattccagtggttcgcaaaatcaagaatcagatcaatgacattcgtgaacaaggggctttaactgattgtcttgagcttcttgatctgtcagttgatttagtatgtgattcaattgcagcaattgataagagaagtcgttcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttactaaagctatgataaatggaacgaatcttgatgagttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="144576" stop="143430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144276" g_stop="143730" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E271195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144276" e_stop="143730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGATGAGTTGATCT</genome_strand>
        <mrna_strand>CAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGATGAGTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255446" ref_strand="+" ref_description="SGN-E255446 [cLEG-30-G11]">
      <seq>taaaatggctactcctcaacaacctttgttaacaaaaacacacaaacaaaattccataatcagcttcaagatcctcacttttgttgtaactttgtttgttgctctcttcttagttgtgtttcttgttgctccatatcaatttgagattaaacattctaatctgtgtaaaactgcacaagattcccaactctgtctcagttatgtttctgatttaatatccaatgaaattgtcacatctgattcagatggactaagtattctgaagaaatttttagtttactctgttcatcaaatgaacaatgcaattccagtggttcgcaaaatcaagaatcagatcaatgacattcgtgaacaaggggctttaactgattgtcttgagcttcttgatctgtcagttgatttagtatgtgattcaattgcagcaattgataagagaagtcgttcggagcatgccaatgcgcaaagttggctaagtggtgtgcttactaaccacgttacgtgcttggatgagcttgattcctttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="144595" stop="143470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144295" g_stop="143770" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E255446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144295" e_stop="143770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACT</genome_strand>
        <mrna_strand>TAAAATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254887" ref_strand="+" ref_description="SGN-E254887 [cLEG-33-P2]">
      <seq>taaaatggctactcctcaacaacctttgttaacaaaaacacacaaacagggtgcgatattcagcttcaagagcctgacttttgttgtaactttgtttgttgctctcttcttagttgtgtttcttgttgctccatatcaatttgagattaaacattctaatctgtgtaaaactgcacaagattcccaactctgtctcagatatgtttctgatttaatatccaatgaaattgtcacatctgattcagatggactaagtattctgaagaaatttttagtttactctgttcatcaaatgaacaatgcatttccagtggttcgcaaaatcaagaatcagatcaatgacattcgtgaacaaggggctttaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="144595" stop="143627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144295" g_stop="143927" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E254887" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144295" e_stop="143927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGA</genome_strand>
        <mrna_strand>TAAAATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAGGGTGCGATATTCAGCTTCAAGAGCCTGACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGATATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCATTTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394756" ref_strand="+" ref_description="SGN-E394756 [TUS-42-H3]">
      <seq>ctaaaatggctactcctcaacaacctttgttaacaaaaacacacaaacaaaattccataatcagcttcaagatcctcacttttgttgtaactttgtttgttgctctcttcttagttgtgtttcttgttgctccatatcaatttgagattaaacattctaatctgtgtaaaactgcacaagattcccaactctgtctcagttatgtttctgatttaatatccaatgaaattgtcacatctgattcagatggactaagtattctgaagaaatttttagtttactctgttcatcaaatgaacaatgcaattcctgtggttcgcaaaatcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="144596" stop="143667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144296" g_stop="143967" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E394756" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144296" e_stop="143967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGA</genome_strand>
        <mrna_strand>CTAAAATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCTGTGGTTCGCAAAATCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369847" ref_strand="+" ref_description="SGN-E369847 [TUS-25-O17]">
      <seq>taaaatggctactcctcaacaatctttgttaacaaaaacacacaaacaaaattccataatcagcttcaagatcctcacttttgttgtaactttgtttgttgctctcttcttagttgtgtttcttgttgctccatatcaatttgagattaaacattctaatctgtgtaaaactgcacaagattcccaactctgtctcagttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="-" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="144595" stop="143792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144295" g_stop="144092" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="-" ref_id="SGN-E369847" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144295" e_stop="144092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGT</genome_strand>
        <mrna_strand>TAAAATGGCTACTCCTCAACAATCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710914" ref_strand="+" ref_description="SGN-E710914 [FA57BE03]">
      <seq>aaaaaccagagcatgcctcaactttggcaactattgaggcatcacaattggttgtcgttgaggataatcaaaatgtgataaaaattggttcttcgacatgtgcaactactatattgaatgcacatcatggtgtatctcaaagattggaggatacaaattcaagagttgtggttggtgcatcactacttgattctcgacagaaattaggtgatgttaatgcacataaatcagatgaaaatcataggcagcatgtagttgttggttctaatgttaaaaaaatttctgtgagtgacaagtgatgcattgggaaggtctgatgccccaaataagtttgctaacctacgagatgaggaaagtgatgaagaggattggttggatcagtgctttgagaatgcagctagggatgcaaatatttctcctacgcaacaacgcaataacaaaaagaaacatggaagaaagaattgttgggatggcaacgtgactgaggagtttgttccaaggcacttaccaatgtgactagcaaagcagaatcatatgacagtgtcaacatattcaacaagatccaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0226J04-1XHul/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0226J04.1" temp_strand="+" temp_description="C07HBa0226J04.1  AC236943.1 htgs_phase:1 submitted_to_sgn_as:gi|242118061|gb|AC236943.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0226J04, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces">
        <position start="164349" stop="165518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="164649" g_stop="165218" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0226J04.1" gen_strand="+" ref_id="SGN-E710914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0226J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="164649" e_stop="165218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCAGAGCATGCCTCAACTTTGGCAACTATTGAGGCATCACAATTGGTTGTCGTTGAGGATAATCAAAATGTGATAAAAATTGGTTCTTCGACATGTGCAACTACTATATTGAATGCACATCATGGTGTATCTCAAAGATTGGAGGATACAAATTCAAGAGTTGTGGTTGGTGCATCACTAGTTGATTCTCGACAGAAATTAGGTGATGTTAATGCACATAAATCAGATGAAAATCATAGGCAGCATGTAGTTGTTGGTTCTAATGTTAAAAAAATTTCTGTGAGTGACAAGTGATGCATTGGGAAGGTCTGATGCCCCAAATAAGTTTGCTAACCTACGAGATGAGGAAAGTGATGAAGAGGATTGGTTGGATCAGTGCTTTGAGAATGCAGCTAGGGATGCAAATATTTCTCCTACGCAACAACGCAATAACAAAAAGAAACATGGAAGAAAGAATTGTTGGGATGGCAACGTGACTGAGGAGTTTGTTCCAAGGCACTTACCAATGTGACTAGCAAAGCAGAATCATATGACAGTGTCAACATATTCAACAAGATCCAATAAT</genome_strand>
        <mrna_strand>AAAAACCAGAGCATGCCTCAACTTTGGCAACTATTGAGGCATCACAATTGGTTGTCGTTGAGGATAATCAAAATGTGATAAAAATTGGTTCTTCGACATGTGCAACTACTATATTGAATGCACATCATGGTGTATCTCAAAGATTGGAGGATACAAATTCAAGAGTTGTGGTTGGTGCATCACTACTTGATTCTCGACAGAAATTAGGTGATGTTAATGCACATAAATCAGATGAAAATCATAGGCAGCATGTAGTTGTTGGTTCTAATGTTAAAAAAATTTCTGTGAGTGACAAGTGATGCATTGGGAAGGTCTGATGCCCCAAATAAGTTTGCTAACCTACGAGATGAGGAAAGTGATGAAGAGGATTGGTTGGATCAGTGCTTTGAGAATGCAGCTAGGGATGCAAATATTTCTCCTACGCAACAACGCAATAACAAAAAGAAACATGGAAGAAAGAATTGTTGGGATGGCAACGTGACTGAGGAGTTTGTTCCAAGGCACTTACCAATGTGACTAGCAAAGCAGAATCATATGACAGTGTCAACATATTCAACAAGATCCAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>556</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4720" PGL_stop="614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4720" e_stop="4467"/>
            <exon e_start="4374" e_stop="4284"/>
            <exon e_start="4097" e_stop="4003"/>
            <exon e_start="3579" e_stop="3522"/>
            <exon e_start="2503" e_stop="2319"/>
            <exon e_start="2228" e_stop="2171"/>
            <exon e_start="846" e_stop="806"/>
            <exon e_start="665" e_stop="614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.655" e_score="0.984"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="0.948"/>
          <exon-intron don_prob="0.739" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4720" e_stop="4467" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4466" i_stop="4375" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4374" e_stop="4284" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.935" acc_prob="0.942">
            <gDNA_intron_boundary i_start="4283" i_stop="4098" i_length="186"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4097" e_stop="4003" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="4002" i_stop="3580" i_length="423"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3579" e_stop="3522" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.866" acc_prob="0.899">
            <gDNA_intron_boundary i_start="3521" i_stop="2504" i_length="1018"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="2503" e_stop="2319" e_length="185"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.655">
            <gDNA_intron_boundary i_start="2318" i_stop="2229" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.948">
            <gDNA_exon_boundary e_start="2228" e_stop="2171" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2170" i_stop="847" i_length="1324"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="846" e_stop="806" e_length="41"/>
          </exon>
          <intron i_serial="7" don_prob="0.739" acc_prob="0.994">
            <gDNA_intron_boundary i_start="805" i_stop="666" i_length="140"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="665" e_stop="614" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4720" stop="4467"/>
              <exon start="4374" stop="4284"/>
              <exon start="4097" stop="4003"/>
              <exon start="3579" stop="3522"/>
              <exon start="2503" stop="2391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4700" stop="4467"/>
              <exon start="4374" stop="4284"/>
              <exon start="4097" stop="4003"/>
              <exon start="3579" stop="3534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4697" stop="4467"/>
              <exon start="4374" stop="4284"/>
              <exon start="4097" stop="4003"/>
              <exon start="3579" stop="3522"/>
              <exon start="2503" stop="2449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4686" stop="4467"/>
              <exon start="4374" stop="4284"/>
              <exon start="4097" stop="4003"/>
              <exon start="3579" stop="3522"/>
              <exon start="2503" stop="2379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4628" stop="4467"/>
              <exon start="4374" stop="4284"/>
              <exon start="4097" stop="4003"/>
              <exon start="3579" stop="3522"/>
              <exon start="2503" stop="2319"/>
              <exon start="2228" stop="2171"/>
              <exon start="846" stop="806"/>
              <exon start="665" stop="635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4590" stop="4467"/>
              <exon start="4374" stop="4284"/>
              <exon start="4097" stop="4003"/>
              <exon start="3579" stop="3522"/>
              <exon start="2503" stop="2432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4573" stop="4467"/>
              <exon start="4374" stop="4284"/>
              <exon start="4097" stop="4003"/>
              <exon start="3579" stop="3522"/>
              <exon start="2503" stop="2319"/>
              <exon start="2228" stop="2171"/>
              <exon start="846" stop="806"/>
              <exon start="665" stop="614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATACAGTGCTGGTACCGCTTGAAACGCCTGCGGGAACTACACACATAAACTCTCCCGCAGATACAGCTGAATCCTCCCAATTCTCGAGACAAATTCCGTTGATATTCAGCATTTCTATCAGTTTTTCTTCGTCGGAGATTTTGCAGATCTGTTAGTTGATTCATACATTAGCAGTATTAGCTTTGCCGTTTTTGTGGAAAGCTCAATAATCATGGTGTCCACGTCTAAGATCAAATCCGTTGACTTTTACAG : GAAAATACCTCGAGATTTGACTGAGGCATCATTATCTGGTGCTGGATTGTCCATTGTAGCAGCACTTTGCATGATGTTTCTCTTTGGAATG : GAACTAAATAACTATTTGACAGTGAGCACTACCACATCTGTTATTGTTGATAAGAGTTCTGATGCGGAATTCTTACGAATTGATTTTAATATGAG : TTTCCCGGCATTGTCTTGTGAATTTGCATCAGTGGATGTGAGTGATGTCTTAGGAACA : AATAGGTTGAACATAACCAAAACAGTACGCAAGCATTCCATTGACAAAAACTTGAGACCTACTGGCTCGGAGTTCCATTCAGGCTCAACTGCAACAGAACTCAAACATGATGCGGAAGATGATGAGGAATATGGTGAAGGGTCTGTTTCCTTAAATGGACACAGTTTTGATAGAGTTACTCACCA : TTTCCCAATTTTGGTTGTAAATTTCTTCGCTCCTTGGTGCTATTGGAGCAACCGGCTG : AAACCTTCATGGGAGAAAGCAGCCAATATTATAAGAGAGAG : ATATGACCGGGAATCGGATGGGCGTATTCTTGTGGCAAAAGTTGATTGCACT</gDNA_template>
            <first_frame> I  Y  S  A  G  T  A  *  N  A  C  G  N  Y  T  H  K  L  S  R  R  Y  S  *  I  L  P  I  L  E  T  N  S  V  D  I  Q  H  F  Y  Q  F  F  F  V  G  D  F  A  D  L  L  V  D  S  Y  I  S  S  I  S  F  A  V  F  V  E  S  S  I  I  M  V  S  T  S  K  I  K  S  V  D  F  Y  R :   K  I  P  R  D  L  T  E  A  S  L  S  G  A  G  L  S  I  V  A  A  L  C  M  M  F  L  F  G  M  :  E  L  N  N  Y  L  T  V  S  T  T  T  S  V  I  V  D  K  S  S  D  A  E  F  L  R  I  D  F  N  M  S :   F  P  A  L  S  C  E  F  A  S  V  D  V  S  D  V  L  G  T  :  N  R  L  N  I  T  K  T  V  R  K  H  S  I  D  K  N  L  R  P  T  G  S  E  F  H  S  G  S  T  A  T  E  L  K  H  D  A  E  D  D  E  E  Y  G  E  G  S  V  S  L  N  G  H  S  F  D  R  V  T  H  H :   F  P  I  L  V  V  N  F  F  A  P  W  C  Y  W  S  N  R  L  :  K  P  S  W  E  K  A  A  N  I  I  R  E  R :   Y  D  R  E  S  D  G  R  I  L  V  A  K  V  D  C  T </first_frame>
            <second_frame>  Y  T  V  L  V  P  L  E  T  P  A  G  T  T  H  I  N  S  P  A  D  T  A  E  S  S  Q  F  S  R  Q  I  P  L  I  F  S  I  S  I  S  F  S  S  S  E  I  L  Q  I  C  *  L  I  H  T  L  A  V  L  A  L  P  F  L  W  K  A  Q  *  S  W  C  P  R  L  R  S  N  P  L  T  F  T   : G  K  Y  L  E  I  *  L  R  H  H  Y  L  V  L  D  C  P  L  *  Q  H  F  A  *  C  F  S  L  E  W :   N  *  I  T  I  *  Q  *  A  L  P  H  L  L  L  L  I  R  V  L  M  R  N  S  Y  E  L  I  L  I  *   : V  S  R  H  C  L  V  N  L  H  Q  W  M  *  V  M  S  *  E  Q :   I  G  *  T  *  P  K  Q  Y  A  S  I  P  L  T  K  T  *  D  L  L  A  R  S  S  I  Q  A  Q  L  Q  Q  N  S  N  M  M  R  K  M  M  R  N  M  V  K  G  L  F  P  *  M  D  T  V  L  I  E  L  L  T   : I  S  Q  F  W  L  *  I  S  S  L  L  G  A  I  G  A  T  G  * :   N  L  H  G  R  K  Q  P  I  L  *  E  R   : D  M  T  G  N  R  M  G  V  F  L  W  Q  K  L  I  A   </second_frame>
            <third_frame>   I  Q  C  W  Y  R  L  K  R  L  R  E  L  H  T  *  T  L  P  Q  I  Q  L  N  P  P  N  S  R  D  K  F  R  *  Y  S  A  F  L  S  V  F  L  R  R  R  F  C  R  S  V  S  *  F  I  H  *  Q  Y  *  L  C  R  F  C  G  K  L  N  N  H  G  V  H  V  *  D  Q  I  R  *  L  L  Q  :  E  N  T  S  R  F  D  *  G  I  I  I  W  C  W  I  V  H  C  S  S  T  L  H  D  V  S  L  W  N   : G  T  K  *  L  F  D  S  E  H  Y  H  I  C  Y  C  *  *  E  F  *  C  G  I  L  T  N  *  F  *  Y  E  :  F  P  G  I  V  L  *  I  C  I  S  G  C  E  *  C  L  R  N   : K  *  V  E  H  N  Q  N  S  T  Q  A  F  H  *  Q  K  L  E  T  Y  W  L  G  V  P  F  R  L  N  C  N  R  T  Q  T  *  C  G  R  *  *  G  I  W  *  R  V  C  F  L  K  W  T  Q  F  *  *  S  Y  S  P  :  F  P  N  F  G  C  K  F  L  R  S  L  V  L  L  E  Q  P  A   : E  T  F  M  G  E  S  S  Q  Y  Y  K  R  E  :  I  *  P  G  I  G  W  A  Y  S  C  G  K  S  *  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4648" stop="4467"/>
                    <exon start="4374" stop="4284"/>
                    <exon start="4097" stop="4003"/>
                    <exon start="3579" stop="3522"/>
                    <exon start="2503" stop="2319"/>
                    <exon start="2228" stop="2171"/>
                    <exon start="846" stop="806"/>
                    <exon start="665" stop="614"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILPILETNSVDIQHFYQFFFVGDFADLLVDSYISSISFAVFVESSIIMVSTSKIKSVDFYRKIPRDLTEASLSGAGLSIVAALCMMFLFGMELNNYLTVSTTTSVIVDKSSDAEFLRIDFNMSFPALSCEFASVDVSDVLGTNRLNITKTVRKHSIDKNLRPTGSEFHSGSTATELKHDAEDDEEYGEGSVSLNGHSFDRVTHHFPILVVNFFAPWCYWSNRLKPSWEKAANIIRERYDRESDGRILVAKVDCT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8484" PGL_stop="11661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8484" e_stop="8635"/>
            <exon e_start="11163" e_stop="11661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.940" e_score="0.895"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="8484" e_stop="8635" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.940">
            <gDNA_intron_boundary i_start="8636" i_stop="11162" i_length="2527"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="11163" e_stop="11661" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8484" stop="8635"/>
              <exon start="11163" stop="11661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8484" stop="8635"/>
              <exon start="11163" stop="11495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGATGGTCGTGTTCAGTACTTCTCCGATGATCAAATTTCGCCGGTAACGAAGGTTACAGGTCGCCGTGGTTCCATATTTACTGTCTACTTTTGCAACCAAAAGCTTCGGTCTCCGAGTTCTCTTTCCTCAAATGGTCACTGTCGTTTCTA : GAAGTAGGTGGCACACAATTAACAGCTTCAAACGGCATACTACTTTGGAAGTGCATAACCCTGAAGGCGGAGAAGATGAGATCAGTAATTTACCTGATTCCATTCTTCTTCACATTCTTTCATATCTTCCTACCAGAGATGTTGTGGGCACATGTATACTTTCAACAAGGTGGAAGAATCTTTGGACTTGTGTTGAAAACATTGACTTTGATGACTCATTTCTCTACTCAAGTAGGGTTTTTGGTTATCCGATGAAGGTCACTAGTTTCATGCACCTTGTTCACAGATTTCTTCAACTTCGAGAAAAATCAGTCATAAAAAAGTTTCGCCTTTCCTGCCGTGTTTGCTTCAGTGCCTCTCATGTATGTTCATGGCTTTCAACTGTTATTAGGCATAATGTTCAAGATCTTGATCTCTGTCTTTTTGTAGAAGAACCTTTTATGTTGCTTCAATGTGTTTCCAGTTGCAAGACACTTACTTCTCTAAAACTTGAAATGAA</gDNA_template>
            <first_frame> W  D  G  R  V  Q  Y  F  S  D  D  Q  I  S  P  V  T  K  V  T  G  R  R  G  S  I  F  T  V  Y  F  C  N  Q  K  L  R  S  P  S  S  L  S  S  N  G  H  C  R  F  * :   K  *  V  A  H  N  *  Q  L  Q  T  A  Y  Y  F  G  S  A  *  P  *  R  R  R  R  *  D  Q  *  F  T  *  F  H  S  S  S  H  S  F  I  S  S  Y  Q  R  C  C  G  H  M  Y  T  F  N  K  V  E  E  S  L  D  L  C  *  K  H  *  L  *  *  L  I  S  L  L  K  *  G  F  W  L  S  D  E  G  H  *  F  H  A  P  C  S  Q  I  S  S  T  S  R  K  I  S  H  K  K  V  S  P  F  L  P  C  L  L  Q  C  L  S  C  M  F  M  A  F  N  C  Y  *  A  *  C  S  R  S  *  S  L  S  F  C  R  R  T  F  Y  V  A  S  M  C  F  Q  L  Q  D  T  Y  F  S  K  T  *  N  E </first_frame>
            <second_frame>  G  M  V  V  F  S  T  S  P  M  I  K  F  R  R  *  R  R  L  Q  V  A  V  V  P  Y  L  L  S  T  F  A  T  K  S  F  G  L  R  V  L  F  P  Q  M  V  T  V  V  S   : R  S  R  W  H  T  I  N  S  F  K  R  H  T  T  L  E  V  H  N  P  E  G  G  E  D  E  I  S  N  L  P  D  S  I  L  L  H  I  L  S  Y  L  P  T  R  D  V  V  G  T  C  I  L  S  T  R  W  K  N  L  W  T  C  V  E  N  I  D  F  D  D  S  F  L  Y  S  S  R  V  F  G  Y  P  M  K  V  T  S  F  M  H  L  V  H  R  F  L  Q  L  R  E  K  S  V  I  K  K  F  R  L  S  C  R  V  C  F  S  A  S  H  V  C  S  W  L  S  T  V  I  R  H  N  V  Q  D  L  D  L  C  L  F  V  E  E  P  F  M  L  L  Q  C  V  S  S  C  K  T  L  T  S  L  K  L  E  M   </second_frame>
            <third_frame>   G  W  S  C  S  V  L  L  R  *  S  N  F  A  G  N  E  G  Y  R  S  P  W  F  H  I  Y  C  L  L  L  Q  P  K  A  S  V  S  E  F  S  F  L  K  W  S  L  S  F  L  :  E  V  G  G  T  Q  L  T  A  S  N  G  I  L  L  W  K  C  I  T  L  K  A  E  K  M  R  S  V  I  Y  L  I  P  F  F  F  T  F  F  H  I  F  L  P  E  M  L  W  A  H  V  Y  F  Q  Q  G  G  R  I  F  G  L  V  L  K  T  L  T  L  M  T  H  F  S  T  Q  V  G  F  L  V  I  R  *  R  S  L  V  S  C  T  L  F  T  D  F  F  N  F  E  K  N  Q  S  *  K  S  F  A  F  P  A  V  F  A  S  V  P  L  M  Y  V  H  G  F  Q  L  L  L  G  I  M  F  K  I  L  I  S  V  F  L  *  K  N  L  L  C  C  F  N  V  F  P  V  A  R  H  L  L  L  *  N  L  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8533" stop="8635"/>
                    <exon start="11163" stop="11659"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLQVAVVPYLLSTFATKSFGLRVLFPQMVTVVSRSRWHTINSFKRHTTLEVHNPEGGEDEISNLPDSILLHILSYLPTRDVVGTCILSTRWKNLWTCVENIDFDDSFLYSSRVFGYPMKVTSFMHLVHRFLQLREKSVIKKFRLSCRVCFSASHVCSWLSTVIRHNVQDLDLCLFVEEPFMLLQCVSSCKTLTSLKLEM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18148" PGL_stop="22552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18148" e_stop="19061"/>
            <exon e_start="19940" e_stop="20165"/>
            <exon e_start="20755" e_stop="20977"/>
            <exon e_start="21760" e_stop="21973"/>
            <exon e_start="22226" e_stop="22552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.955"/>
          <exon-intron don_prob="0.874" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="18148" e_stop="19061" e_length="914"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19062" i_stop="19939" i_length="878"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19940" e_stop="20165" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.874" acc_prob="0.980">
            <gDNA_intron_boundary i_start="20166" i_stop="20754" i_length="589"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20755" e_stop="20977" e_length="223"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.962">
            <gDNA_intron_boundary i_start="20978" i_stop="21759" i_length="782"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21760" e_stop="21973" e_length="214"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21974" i_stop="22225" i_length="252"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="22226" e_stop="22552" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18148" stop="18775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18157" stop="18739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18443" stop="18914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18450" stop="19061"/>
              <exon start="19940" stop="20020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18619" stop="19061"/>
              <exon start="19940" stop="20137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18683" stop="19061"/>
              <exon start="19940" stop="20100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18683" stop="19007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18891" stop="19061"/>
              <exon start="19940" stop="20165"/>
              <exon start="20755" stop="20977"/>
              <exon start="21760" stop="21919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18990" stop="19061"/>
              <exon start="19940" stop="20165"/>
              <exon start="20755" stop="20977"/>
              <exon start="21760" stop="21807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18990" stop="19061"/>
              <exon start="19940" stop="20165"/>
              <exon start="20755" stop="20895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19030" stop="19061"/>
              <exon start="19940" stop="20165"/>
              <exon start="20755" stop="20976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19940" stop="20165"/>
              <exon start="20755" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19978" stop="20165"/>
              <exon start="20755" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20011" stop="20165"/>
              <exon start="20755" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603313" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20070" stop="20165"/>
              <exon start="20755" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20070" stop="20165"/>
              <exon start="20755" stop="20977"/>
              <exon start="21760" stop="21826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20071" stop="20165"/>
              <exon start="20755" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20081" stop="20165"/>
              <exon start="20755" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574123" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20104" stop="20165"/>
              <exon start="20755" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20117" stop="20165"/>
              <exon start="20755" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20757" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589616" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20819" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20828" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20858" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20952" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20953" stop="20977"/>
              <exon start="21760" stop="21973"/>
              <exon start="22226" stop="22534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21772" stop="21973"/>
              <exon start="22226" stop="22552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213135" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21773" stop="21973"/>
              <exon start="22226" stop="22481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21948" stop="21973"/>
              <exon start="22226" stop="22535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220453" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACCCTAGTTTTTTTCTGCTATTTCAACATACACTTTCTTCCATAAATTCTTGTTTTTTGTATACATAAAAAAAAAAAACTTGTTTTGTGGATCATCACATCACATGTTTGATCTTGTTTTACACTGAGATTTCAATATTTTTCTCTGTGTTTATATCACACAAGTAGATCTCCTTCTCACTTACACAGAGTGCACATGGTTTTTCAGGCTCTTTCTACGTAGACGGAGCCGTGAAGAGAAACCTTTTTTTTTTTCTTTTCTTTTCAAGTTTTCTGTAAAATCTTGATCTGGGGTTTTGGGGTTTTTTGTGTTTTTGATCTTATAATAAAAAAAAGTTTTAATTTTTAGTCAAAACCCATCTGAATTTTCGCTTGCCAGCTCAAAGGATTTTGAACCATGATGTCTACAGTGAAGCAAGCAGCTTTTACAATCAATGGGTGTGATTTCATTCGGTCAAAGTCTCAATCTTTGGCTTCTACACGCCGTATCTCTCTACTTCCGCCATTACCGGCGATGAAGTCTCGCCGGAGCTCCGGTGTATCGGTGTCGAAGCCTGTTTTTGTTTCTTCTGTTGAGAGTTTTGGGGGTTTGAAGAGATCTAATGAGAAAACTGATAGTGGTTTGGTTAAGTGTAAGGCTTATGAAGCGGATCGGGCTGAGCCGATGGAAGGACCTGAATCGAAAGCGGAGTTGGCAAGGAAGATGAAGATCGGTGTTTATTTTGCTACTTGGTGGTTTTTGAATGTGATTTTTAATATTTATAATAAGAAAGTGTTGAATGCTTTTCCATTTCCTTGGTTAACATCAACTTTGTCACTTGCTGCTGGTTCACTTATTATGTTGATTTCTTGGACTCTTAGAATTGCAGAAGCTCCTAAAACTGATCTTGAATTCTGGAAAACTCTCTTACCG : GTTGCCATTGCACATACAATTGGGCATGTTGCAGCTACAGTGAGCATGTCAAAGGTGGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTTTTGGTTTCAAGGTTCCTCTTGGGAGAGTCATTCCCTACCGCCGTTTACTTATCTCTTATCCCCATCATCGGTGGTTGTGGTCTTTCTGCGCTTACAGAGTTGAACTTCAACTGGATTG : GTTTCTCGGGTGCTATGATCTCGAATGTGGCATTTGTCTTCAGAAATATATTCTCCAAGAAGGGTATGAAGGGGAAGTCTGTTAGTGGGATGAACTACTATGCTTGCTTGTCTATGCTGTCTTTGTTGATTCTCACACCATTTGCCATTGCTGTTGAGGGACCACAAATGTGGGCTCTAGGATTTGAAAAGGCTGTCTCTCAAATCGGTCCCCAGATCGTCTG : GTGGATGGCGGCCCAGAGTGTATTTTATCACCTCTACAATCAAGTTTCGTACATGTCTTTGGATGAGATCTCTCCTTTGACGTTTAGTATTGGAAACACCATGAAACGTATATCAGTAATCGTCTCTTCCATCATTATCTTCCGTACACCCGTCCAGCCAGTCAACGCTCTTGGAGCTGCCATTGCGATTCTTGGAACTTTCTTGTACTCACAG : GCAAAACAATGAAGAGTGGGGATTTGCATACCGCGTTAGGGATAAAAGACGTTGAAGAGAACCTTGAGGTGTTGCGAATGACGTCTCTCAGGATCCTCAGTCTACCCTTACTTTGGGTTGAGTATGAAACTTATGAAGTATGTAGATAGCAATAATGGGTTAAAATTAACTCAAATCCTATAGAGTTACTAAGGCTGGTTTCCCTGTTTTGTTATTATTATTCGTAGAGACATCAACAAGTGTACTAATAAACTGAATACTTGGTTGAGAGTGGTATAAATTAGTTCATTTAAACACACATTTGGTTAATAAACCTCCCAGAATTTG</gDNA_template>
            <first_frame> P  P  *  F  F  S  A  I  S  T  Y  T  F  F  H  K  F  L  F  F  V  Y  I  K  K  K  N  L  F  C  G  S  S  H  H  M  F  D  L  V  L  H  *  D  F  N  I  F  L  C  V  Y  I  T  Q  V  D  L  L  L  T  Y  T  E  C  T  W  F  F  R  L  F  L  R  R  R  S  R  E  E  K  P  F  F  F  S  F  L  F  K  F  S  V  K  S  *  S  G  V  L  G  F  F  V  F  L  I  L  *  *  K  K  V  L  I  F  S  Q  N  P  S  E  F  S  L  A  S  S  K  D  F  E  P  *  C  L  Q  *  S  K  Q  L  L  Q  S  M  G  V  I  S  F  G  Q  S  L  N  L  W  L  L  H  A  V  S  L  Y  F  R  H  Y  R  R  *  S  L  A  G  A  P  V  Y  R  C  R  S  L  F  L  F  L  L  L  R  V  L  G  V  *  R  D  L  M  R  K  L  I  V  V  W  L  S  V  R  L  M  K  R  I  G  L  S  R  W  K  D  L  N  R  K  R  S  W  Q  G  R  *  R  S  V  F  I  L  L  L  G  G  F  *  M  *  F  L  I  F  I  I  R  K  C  *  M  L  F  H  F  L  G  *  H  Q  L  C  H  L  L  L  V  H  L  L  C  *  F  L  G  L  L  E  L  Q  K  L  L  K  L  I  L  N  S  G  K  L  S  Y  R :   L  P  L  H  I  Q  L  G  M  L  Q  L  Q  *  A  C  Q  R  W  Q  F  H  S  L  T  S  S  R  V  V  N  L  L  L  V  F  W  F  Q  G  S  S  W  E  S  H  S  L  P  P  F  T  Y  L  L  S  P  S  S  V  V  V  V  F  L  R  L  Q  S  *  T  S  T  G  L  :  V  S  R  V  L  *  S  R  M  W  H  L  S  S  E  I  Y  S  P  R  R  V  *  R  G  S  L  L  V  G  *  T  T  M  L  A  C  L  C  C  L  C  *  F  S  H  H  L  P  L  L  L  R  D  H  K  C  G  L  *  D  L  K  R  L  S  L  K  S  V  P  R  S  S   : G  G  W  R  P  R  V  Y  F  I  T  S  T  I  K  F  R  T  C  L  W  M  R  S  L  L  *  R  L  V  L  E  T  P  *  N  V  Y  Q  *  S  S  L  P  S  L  S  S  V  H  P  S  S  Q  S  T  L  L  E  L  P  L  R  F  L  E  L  S  C  T  H  R :   Q  N  N  E  E  W  G  F  A  Y  R  V  R  D  K  R  R  *  R  E  P  *  G  V  A  N  D  V  S  Q  D  P  Q  S  T  L  T  L  G  *  V  *  N  L  *  S  M  *  I  A  I  M  G  *  N  *  L  K  S  Y  R  V  T  K  A  G  F  P  V  L  L  L  L  F  V  E  T  S  T  S  V  L  I  N  *  I  L  G  *  E  W  Y  K  L  V  H  L  N  T  H  L  V  N  K  P  P  R  I   </first_frame>
            <second_frame>  H  P  S  F  F  L  L  F  Q  H  T  L  S  S  I  N  S  C  F  L  Y  T  *  K  K  K  T  C  F  V  D  H  H  I  T  C  L  I  L  F  Y  T  E  I  S  I  F  F  S  V  F  I  S  H  K  *  I  S  F  S  L  T  Q  S  A  H  G  F  S  G  S  F  Y  V  D  G  A  V  K  R  N  L  F  F  F  L  F  F  S  S  F  L  *  N  L  D  L  G  F  W  G  F  L  C  F  *  S  Y  N  K  K  K  F  *  F  L  V  K  T  H  L  N  F  R  L  P  A  Q  R  I  L  N  H  D  V  Y  S  E  A  S  S  F  Y  N  Q  W  V  *  F  H  S  V  K  V  S  I  F  G  F  Y  T  P  Y  L  S  T  S  A  I  T  G  D  E  V  S  P  E  L  R  C  I  G  V  E  A  C  F  C  F  F  C  *  E  F  W  G  F  E  E  I  *  *  E  N  *  *  W  F  G  *  V  *  G  L  *  S  G  S  G  *  A  D  G  R  T  *  I  E  S  G  V  G  K  E  D  E  D  R  C  L  F  C  Y  L  V  V  F  E  C  D  F  *  Y  L  *  *  E  S  V  E  C  F  S  I  S  L  V  N  I  N  F  V  T  C  C  W  F  T  Y  Y  V  D  F  L  D  S  *  N  C  R  S  S  *  N  *  S  *  I  L  E  N  S  L  T   : G  C  H  C  T  Y  N  W  A  C  C  S  Y  S  E  H  V  K  G  G  S  F  I  H  S  H  H  Q  E  W  *  T  C  F  *  C  F  G  F  K  V  P  L  G  R  V  I  P  Y  R  R  L  L  I  S  Y  P  H  H  R  W  L  W  S  F  C  A  Y  R  V  E  L  Q  L  D  W :   F  L  G  C  Y  D  L  E  C  G  I  C  L  Q  K  Y  I  L  Q  E  G  Y  E  G  E  V  C  *  W  D  E  L  L  C  L  L  V  Y  A  V  F  V  D  S  H  T  I  C  H  C  C  *  G  T  T  N  V  G  S  R  I  *  K  G  C  L  S  N  R  S  P  D  R  L  :  V  D  G  G  P  E  C  I  L  S  P  L  Q  S  S  F  V  H  V  F  G  *  D  L  S  F  D  V  *  Y  W  K  H  H  E  T  Y  I  S  N  R  L  F  H  H  Y  L  P  Y  T  R  P  A  S  Q  R  S  W  S  C  H  C  D  S  W  N  F  L  V  L  T   : G  K  T  M  K  S  G  D  L  H  T  A  L  G  I  K  D  V  E  E  N  L  E  V  L  R  M  T  S  L  R  I  L  S  L  P  L  L  W  V  E  Y  E  T  Y  E  V  C  R  *  Q  *  W  V  K  I  N  S  N  P  I  E  L  L  R  L  V  S  L  F  C  Y  Y  Y  S  *  R  H  Q  Q  V  Y  *  *  T  E  Y  L  V  E  S  G  I  N  *  F  I  *  T  H  I  W  L  I  N  L  P  E  F  </second_frame>
            <third_frame>   T  L  V  F  F  C  Y  F  N  I  H  F  L  P  *  I  L  V  F  C  I  H  K  K  K  K  L  V  L  W  I  I  T  S  H  V  *  S  C  F  T  L  R  F  Q  Y  F  S  L  C  L  Y  H  T  S  R  S  P  S  H  L  H  R  V  H  M  V  F  Q  A  L  S  T  *  T  E  P  *  R  E  T  F  F  F  F  F  S  F  Q  V  F  C  K  I  L  I  W  G  F  G  V  F  C  V  F  D  L  I  I  K  K  S  F  N  F  *  S  K  P  I  *  I  F  A  C  Q  L  K  G  F  *  T  M  M  S  T  V  K  Q  A  A  F  T  I  N  G  C  D  F  I  R  S  K  S  Q  S  L  A  S  T  R  R  I  S  L  L  P  P  L  P  A  M  K  S  R  R  S  S  G  V  S  V  S  K  P  V  F  V  S  S  V  E  S  F  G  G  L  K  R  S  N  E  K  T  D  S  G  L  V  K  C  K  A  Y  E  A  D  R  A  E  P  M  E  G  P  E  S  K  A  E  L  A  R  K  M  K  I  G  V  Y  F  A  T  W  W  F  L  N  V  I  F  N  I  Y  N  K  K  V  L  N  A  F  P  F  P  W  L  T  S  T  L  S  L  A  A  G  S  L  I  M  L  I  S  W  T  L  R  I  A  E  A  P  K  T  D  L  E  F  W  K  T  L  L  P  :  V  A  I  A  H  T  I  G  H  V  A  A  T  V  S  M  S  K  V  A  V  S  F  T  H  I  I  K  S  G  E  P  A  F  S  V  L  V  S  R  F  L  L  G  E  S  F  P  T  A  V  Y  L  S  L  I  P  I  I  G  G  C  G  L  S  A  L  T  E  L  N  F  N  W  I   : G  F  S  G  A  M  I  S  N  V  A  F  V  F  R  N  I  F  S  K  K  G  M  K  G  K  S  V  S  G  M  N  Y  Y  A  C  L  S  M  L  S  L  L  I  L  T  P  F  A  I  A  V  E  G  P  Q  M  W  A  L  G  F  E  K  A  V  S  Q  I  G  P  Q  I  V  W :   W  M  A  A  Q  S  V  F  Y  H  L  Y  N  Q  V  S  Y  M  S  L  D  E  I  S  P  L  T  F  S  I  G  N  T  M  K  R  I  S  V  I  V  S  S  I  I  I  F  R  T  P  V  Q  P  V  N  A  L  G  A  A  I  A  I  L  G  T  F  L  Y  S  Q  :  A  K  Q  *  R  V  G  I  C  I  P  R  *  G  *  K  T  L  K  R  T  L  R  C  C  E  *  R  L  S  G  S  S  V  Y  P  Y  F  G  L  S  M  K  L  M  K  Y  V  D  S  N  N  G  L  K  L  T  Q  I  L  *  S  Y  *  G  W  F  P  C  F  V  I  I  I  R  R  D  I  N  K  C  T  N  K  L  N  T  W  L  R  V  V  *  I  S  S  F  K  H  T  F  G  *  *  T  S  Q  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18543" stop="19061"/>
                    <exon start="19940" stop="20165"/>
                    <exon start="20755" stop="20977"/>
                    <exon start="21760" stop="21973"/>
                    <exon start="22226" stop="22237"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1191</number_coding_nucleotides>
                  <number_encoded_amino_acids>397</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMMSTVKQAAFTINGCDFIRSKSQSLASTRRISLLPPLPAMKSRRSSGVSVSKPVFVSSVESFGGLKRSNEKTDSGLVKCKAYEADRAEPMEGPESKAELARKMKIGVYFATWWFLNVIFNIYNKKVLNAFPFPWLTSTLSLAAGSLIMLISWTLRIAEAPKTDLEFWKTLLPVAIAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGESFPTAVYLSLIPIIGGCGLSALTELNFNWIGFSGAMISNVAFVFRNIFSKKGMKGKSVSGMNYYACLSMLSLLILTPFAIAVEGPQMWALGFEKAVSQIGPQIVWWMAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAILGTFLYSQAKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="26258" PGL_stop="22540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26258" e_stop="25929"/>
            <exon e_start="24925" e_stop="24569"/>
            <exon e_start="23808" e_stop="23366"/>
            <exon e_start="23209" e_stop="23115"/>
            <exon e_start="22970" e_stop="22540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.756" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26258" e_stop="25929" e_length="330"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.983">
            <gDNA_intron_boundary i_start="25928" i_stop="24926" i_length="1003"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24925" e_stop="24569" e_length="357"/>
          </exon>
          <intron i_serial="2" don_prob="0.756" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24568" i_stop="23809" i_length="760"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23808" e_stop="23366" e_length="443"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="23365" i_stop="23210" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23209" e_stop="23115" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="23114" i_stop="22971" i_length="144"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="22970" e_stop="22540" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26258" stop="25929"/>
              <exon start="24925" stop="24569"/>
              <exon start="23808" stop="23660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26207" stop="25949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26195" stop="25929"/>
              <exon start="24925" stop="24569"/>
              <exon start="23808" stop="23716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26188" stop="25929"/>
              <exon start="24925" stop="24596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26121" stop="25929"/>
              <exon start="24925" stop="24835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26002" stop="25929"/>
              <exon start="24925" stop="24569"/>
              <exon start="23808" stop="23751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24882" stop="24569"/>
              <exon start="23808" stop="23366"/>
              <exon start="23209" stop="23173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24845" stop="24569"/>
              <exon start="23808" stop="23531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24811" stop="24569"/>
              <exon start="23808" stop="23374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24808" stop="24584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24782" stop="24569"/>
              <exon start="23808" stop="23366"/>
              <exon start="23209" stop="23188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24782" stop="24569"/>
              <exon start="23808" stop="23556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23681" stop="23366"/>
              <exon start="23209" stop="23115"/>
              <exon start="22970" stop="22541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23633" stop="23366"/>
              <exon start="23209" stop="23115"/>
              <exon start="22970" stop="22544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539929" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23396" stop="23366"/>
              <exon start="23209" stop="23115"/>
              <exon start="22970" stop="22545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288020" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22835" stop="22540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352480" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGCTTAATTTTCACAAATCATCCAAACATGGCCTTCTCCTCACCGAGCAAAATAGCTCCACCGCTACCGAAGCCTCACCGTTTCTCCTCCTTATCTCAATCGCAAATACCCTTCAAATTCATCAAAATTACGTCATTACCCACTAAACCACCTGCCATAGCTTGTGTCCTCACCGGAAAATCAATGGATGCCACCGCCGTTCAACGACCCGATTCGTTTGGTCGGTTTGGAAAGTTCGGCGGTAAGTATGTACCGGAAACTCTAATGCACGCTCTTGATGAGCTGGAAACCGCCTTCAATTCGCTCGCTACAGACCAGGACTTTCAG : AAGGAACTAGATGGGATATTAAGAGATTATGTTGGCAGAGAGAGCCCTCTTTATTTTGCTGAGCGACTTACTGAGCATTATAAACGTCCAGATGGTGAAGGGCCAATGATCTACCTGAAGAGAGAAGATTTAAACCACACGGGTGCCCACAAAATCAATAATGCTGTTGCGCAAGCTTTGCTTGCCAAGCGCTTGGGAAAGAAACGCATTATTGCCGAGACAGGGGCTGGTCAGCATGGTGTTGCCACTGCAACTGTTTGTGCTCGGTTTGGTTTGGACTGTGTTATTTATATGGGTGCTCAAGATATGGAGAGGCAAGCATTGAATGTCTTCAGAATGCGACTGCTTGGAGCTGAG : GTTAGAGCAGTCCACTCTGGAACTGCTACTCTCAAGGATGCTACTTCAGAAGCTATAAGGGATTGGGTTACAAATGTTGAAACAACTCACTACATACTTGGATCTGTTGCAGGACCACACCCTTACCCCATGATGGTTAGGGAGTTCCATGCAGTGATTGGTAAAGAAACAAGGAAGCAATCATTGGAAAAGTGGGGCGGGAAACCAGACGTGCTTGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTCTTTCATGAGTTTGTTGATGACAAAGATGTGAGGTTGATTGGGGTTGAAGCAGCAGGTTTTGGTCTAGATAGTAGTAAACATGCCGCCACTTTGACAAAGGGTGAGGTAGGAGTACTGCATGGAGCTATGAGTTATCTACTGCAAGACGAAGATGGGCAGATTGTTGAGCCTCATTCTATCAGTGCCGG : ATTGGATTACCCAGGAGTTGGGCCAGAACACAGCTTTTTGAAAGATCTCGGTAGAGCAGAATATTATAGCATCACAGATGAGGAGGCTTTGGAAG : CCTTCAAAAGGTTATCTCGGTTAGAGGGTATCATCCCCGCTCTGGAAACATCTCATGCTCTCGCCTACTTAGAGAAGCTGTGTCCAACTCTAGCAAATGGAACTAAGGTCGTGCTCAACTGCAGCGGTAGAGGCGATAAAGATGTTCAGACTGCTATTAAATATTTGAAGGTTTGATGGAAAAGTTCGTAACACTTGTCCCAAAGAGTTATCTGTACTTTAAAGGTAACTTTTCTGTTTTATAGCAGAAACGAATTTTGTAAGTTAAATAAAGATGTCTTGTTAGAGCTGTAGATTCATGAACCCAGAACCCAGTTCTATTGATCGTTAATCGGTCCACAAAATTTCACTTTAATCGGTCCTCTGATCGATCAATGTCAAACATGTATCGCTAATTTAGGCATGCTGTTTATTTGAGCCAAATTCTGGGAG</gDNA_template>
            <first_frame> I  C  L  I  F  T  N  H  P  N  M  A  F  S  S  P  S  K  I  A  P  P  L  P  K  P  H  R  F  S  S  L  S  Q  S  Q  I  P  F  K  F  I  K  I  T  S  L  P  T  K  P  P  A  I  A  C  V  L  T  G  K  S  M  D  A  T  A  V  Q  R  P  D  S  F  G  R  F  G  K  F  G  G  K  Y  V  P  E  T  L  M  H  A  L  D  E  L  E  T  A  F  N  S  L  A  T  D  Q  D  F  Q  :  K  E  L  D  G  I  L  R  D  Y  V  G  R  E  S  P  L  Y  F  A  E  R  L  T  E  H  Y  K  R  P  D  G  E  G  P  M  I  Y  L  K  R  E  D  L  N  H  T  G  A  H  K  I  N  N  A  V  A  Q  A  L  L  A  K  R  L  G  K  K  R  I  I  A  E  T  G  A  G  Q  H  G  V  A  T  A  T  V  C  A  R  F  G  L  D  C  V  I  Y  M  G  A  Q  D  M  E  R  Q  A  L  N  V  F  R  M  R  L  L  G  A  E  :  V  R  A  V  H  S  G  T  A  T  L  K  D  A  T  S  E  A  I  R  D  W  V  T  N  V  E  T  T  H  Y  I  L  G  S  V  A  G  P  H  P  Y  P  M  M  V  R  E  F  H  A  V  I  G  K  E  T  R  K  Q  S  L  E  K  W  G  G  K  P  D  V  L  V  A  C  V  G  G  G  S  N  A  M  G  L  F  H  E  F  V  D  D  K  D  V  R  L  I  G  V  E  A  A  G  F  G  L  D  S  S  K  H  A  A  T  L  T  K  G  E  V  G  V  L  H  G  A  M  S  Y  L  L  Q  D  E  D  G  Q  I  V  E  P  H  S  I  S  A  G :   L  D  Y  P  G  V  G  P  E  H  S  F  L  K  D  L  G  R  A  E  Y  Y  S  I  T  D  E  E  A  L  E   : A  F  K  R  L  S  R  L  E  G  I  I  P  A  L  E  T  S  H  A  L  A  Y  L  E  K  L  C  P  T  L  A  N  G  T  K  V  V  L  N  C  S  G  R  G  D  K  D  V  Q  T  A  I  K  Y  L  K  V  *  W  K  S  S  *  H  L  S  Q  R  V  I  C  T  L  K  V  T  F  L  F  Y  S  R  N  E  F  C  K  L  N  K  D  V  L  L  E  L  *  I  H  E  P  R  T  Q  F  Y  *  S  L  I  G  P  Q  N  F  T  L  I  G  P  L  I  D  Q  C  Q  T  C  I  A  N  L  G  M  L  F  I  *  A  K  F  W  E </first_frame>
            <second_frame>  F  A  *  F  S  Q  I  I  Q  T  W  P  S  P  H  R  A  K  *  L  H  R  Y  R  S  L  T  V  S  P  P  Y  L  N  R  K  Y  P  S  N  S  S  K  L  R  H  Y  P  L  N  H  L  P  *  L  V  S  S  P  E  N  Q  W  M  P  P  P  F  N  D  P  I  R  L  V  G  L  E  S  S  A  V  S  M  Y  R  K  L  *  C  T  L  L  M  S  W  K  P  P  S  I  R  S  L  Q  T  R  T  F  R :   R  N  *  M  G  Y  *  E  I  M  L  A  E  R  A  L  F  I  L  L  S  D  L  L  S  I  I  N  V  Q  M  V  K  G  Q  *  S  T  *  R  E  K  I  *  T  T  R  V  P  T  K  S  I  M  L  L  R  K  L  C  L  P  S  A  W  E  R  N  A  L  L  P  R  Q  G  L  V  S  M  V  L  P  L  Q  L  F  V  L  G  L  V  W  T  V  L  F  I  W  V  L  K  I  W  R  G  K  H  *  M  S  S  E  C  D  C  L  E  L  R :   L  E  Q  S  T  L  E  L  L  L  S  R  M  L  L  Q  K  L  *  G  I  G  L  Q  M  L  K  Q  L  T  T  Y  L  D  L  L  Q  D  H  T  L  T  P  *  W  L  G  S  S  M  Q  *  L  V  K  K  Q  G  S  N  H  W  K  S  G  A  G  N  Q  T  C  L  L  H  V  L  V  E  V  Q  M  L  W  D  S  F  M  S  L  L  M  T  K  M  *  G  *  L  G  L  K  Q  Q  V  L  V  *  I  V  V  N  M  P  P  L  *  Q  R  V  R  *  E  Y  C  M  E  L  *  V  I  Y  C  K  T  K  M  G  R  L  L  S  L  I  L  S  V  P   : D  W  I  T  Q  E  L  G  Q  N  T  A  F  *  K  I  S  V  E  Q  N  I  I  A  S  Q  M  R  R  L  W  K  :  P  S  K  G  Y  L  G  *  R  V  S  S  P  L  W  K  H  L  M  L  S  P  T  *  R  S  C  V  Q  L  *  Q  M  E  L  R  S  C  S  T  A  A  V  E  A  I  K  M  F  R  L  L  L  N  I  *  R  F  D  G  K  V  R  N  T  C  P  K  E  L  S  V  L  *  R  *  L  F  C  F  I  A  E  T  N  F  V  S  *  I  K  M  S  C  *  S  C  R  F  M  N  P  E  P  S  S  I  D  R  *  S  V  H  K  I  S  L  *  S  V  L  *  S  I  N  V  K  H  V  S  L  I  *  A  C  C  L  F  E  P  N  S  G   </second_frame>
            <third_frame>   L  L  N  F  H  K  S  S  K  H  G  L  L  L  T  E  Q  N  S  S  T  A  T  E  A  S  P  F  L  L  L  I  S  I  A  N  T  L  Q  I  H  Q  N  Y  V  I  T  H  *  T  T  C  H  S  L  C  P  H  R  K  I  N  G  C  H  R  R  S  T  T  R  F  V  W  S  V  W  K  V  R  R  *  V  C  T  G  N  S  N  A  R  S  *  *  A  G  N  R  L  Q  F  A  R  Y  R  P  G  L  S   : E  G  T  R  W  D  I  K  R  L  C  W  Q  R  E  P  S  L  F  C  *  A  T  Y  *  A  L  *  T  S  R  W  *  R  A  N  D  L  P  E  E  R  R  F  K  P  H  G  C  P  Q  N  Q  *  C  C  C  A  S  F  A  C  Q  A  L  G  K  E  T  H  Y  C  R  D  R  G  W  S  A  W  C  C  H  C  N  C  L  C  S  V  W  F  G  L  C  Y  L  Y  G  C  S  R  Y  G  E  A  S  I  E  C  L  Q  N  A  T  A  W  S  *   : G  *  S  S  P  L  W  N  C  Y  S  Q  G  C  Y  F  R  S  Y  K  G  L  G  Y  K  C  *  N  N  S  L  H  T  W  I  C  C  R  T  T  P  L  P  H  D  G  *  G  V  P  C  S  D  W  *  R  N  K  E  A  I  I  G  K  V  G  R  E  T  R  R  A  C  C  M  C  W  W  R  F  K  C  Y  G  T  L  S  *  V  C  *  *  Q  R  C  E  V  D  W  G  *  S  S  R  F  W  S  R  *  *  *  T  C  R  H  F  D  K  G  *  G  R  S  T  A  W  S  Y  E  L  S  T  A  R  R  R  W  A  D  C  *  A  S  F  Y  Q  C  R  :  I  G  L  P  R  S  W  A  R  T  Q  L  F  E  R  S  R  *  S  R  I  L  *  H  H  R  *  G  G  F  G  S :   L  Q  K  V  I  S  V  R  G  Y  H  P  R  S  G  N  I  S  C  S  R  L  L  R  E  A  V  S  N  S  S  K  W  N  *  G  R  A  Q  L  Q  R  *  R  R  *  R  C  S  D  C  Y  *  I  F  E  G  L  M  E  K  F  V  T  L  V  P  K  S  Y  L  Y  F  K  G  N  F  S  V  L  *  Q  K  R  I  L  *  V  K  *  R  C  L  V  R  A  V  D  S  *  T  Q  N  P  V  L  L  I  V  N  R  S  T  K  F  H  F  N  R  S  S  D  R  S  M  S  N  M  Y  R  *  F  R  H  A  V  Y  L  S  Q  I  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26258" stop="25929"/>
                    <exon start="24925" stop="24569"/>
                    <exon start="23808" stop="23366"/>
                    <exon start="23209" stop="23115"/>
                    <exon start="22970" stop="22795"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICLIFTNHPNMAFSSPSKIAPPLPKPHRFSSLSQSQIPFKFIKITSLPTKPPAIACVLTGKSMDATAVQRPDSFGRFGKFGGKYVPETLMHALDELETAFNSLATDQDFQKELDGILRDYVGRESPLYFAERLTEHYKRPDGEGPMIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLDCVIYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQSLEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKDVRLIGVEAAGFGLDSSKHAATLTKGEVGVLHGAMSYLLQDEDGQIVEPHSISAGLDYPGVGPEHSFLKDLGRAEYYSITDEEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLANGTKVVLNCSGRGDKDVQTAIKYLKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31051" PGL_stop="29060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31051" e_stop="30640"/>
            <exon e_start="29570" e_stop="29450"/>
            <exon e_start="29302" e_stop="29239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.066" acc_prob="0.998" e_score="0.908"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="0.992"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="31051" e_stop="30640" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.066" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30639" i_stop="29571" i_length="1069"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="29570" e_stop="29450" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="29449" i_stop="29303" i_length="147"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="29302" e_stop="29239" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31051" stop="30640"/>
              <exon start="29570" stop="29450"/>
              <exon start="29302" stop="29239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACACATATACCGGTCAGCACTTTGTCGTCGTCTTCACAAAGTCACAAATTGTTCCAAACAGATAATTCCAACTACAAAAAGACTGTCAAAATGTGGAACCCAGAATCAGTTTTTATGTATTTTCCTCATGGCTCAGAAAACCCATGATTTTTCACCGGAAAAAATGACTAATCTTTGCCGGAAAATAGTTCAAGTCAAGATTAGGTGGAAGATATTTGATAAAGTTTCAATCTTTAGGGAGTTTTTTCGTTTTATTTGGGAAAGGATTATTGTTTGTTCAACTGGACGGAAACCGGTGAGGTACCGGCGTTTGTCTCGAAGAAGTTCATCGTCTCCGGTGGCTATGGAGGAAGTTGAAGGGTATGGGGTAGGTGGTGGGGAAGATGATCCTTTAACTGCAACTTGTAGTGG : ATTAAGTATGTAGGTGATGAACAAGAAAAGAGGTGCTTGCAGACGAAGGGATTGAACTTAATGGATAAAACATTAGTTGTACGAGGTGCACGAATTGCATTTAGAATATGGGATGTAGGAG : GTGATCATAGCTCATTTGATCAGATTCCAATAGCTTGTAAAGATTCTGTTGCCATTCTCTTTAT</gDNA_template>
            <first_frame> D  T  Y  T  G  Q  H  F  V  V  V  F  T  K  S  Q  I  V  P  N  R  *  F  Q  L  Q  K  D  C  Q  N  V  E  P  R  I  S  F  Y  V  F  S  S  W  L  R  K  P  M  I  F  H  R  K  K  *  L  I  F  A  G  K  *  F  K  S  R  L  G  G  R  Y  L  I  K  F  Q  S  L  G  S  F  F  V  L  F  G  K  G  L  L  F  V  Q  L  D  G  N  R  *  G  T  G  V  C  L  E  E  V  H  R  L  R  W  L  W  R  K  L  K  G  M  G  *  V  V  G  K  M  I  L  *  L  Q  L  V  V   : D  *  V  C  R  *  *  T  R  K  E  V  L  A  D  E  G  I  E  L  N  G  *  N  I  S  C  T  R  C  T  N  C  I  *  N  M  G  C  R  R :   *  S  *  L  I  *  S  D  S  N  S  L  *  R  F  C  C  H  S  L  Y </first_frame>
            <second_frame>  T  H  I  P  V  S  T  L  S  S  S  S  Q  S  H  K  L  F  Q  T  D  N  S  N  Y  K  K  T  V  K  M  W  N  P  E  S  V  F  M  Y  F  P  H  G  S  E  N  P  *  F  F  T  G  K  N  D  *  S  L  P  E  N  S  S  S  Q  D  *  V  E  D  I  *  *  S  F  N  L  *  G  V  F  S  F  Y  L  G  K  D  Y  C  L  F  N  W  T  E  T  G  E  V  P  A  F  V  S  K  K  F  I  V  S  G  G  Y  G  G  S  *  R  V  W  G  R  W  W  G  R  *  S  F  N  C  N  L  *  W  :  I  K  Y  V  G  D  E  Q  E  K  R  C  L  Q  T  K  G  L  N  L  M  D  K  T  L  V  V  R  G  A  R  I  A  F  R  I  W  D  V  G   : G  D  H  S  S  F  D  Q  I  P  I  A  C  K  D  S  V  A  I  L  F   </second_frame>
            <third_frame>   H  I  Y  R  S  A  L  C  R  R  L  H  K  V  T  N  C  S  K  Q  I  I  P  T  T  K  R  L  S  K  C  G  T  Q  N  Q  F  L  C  I  F  L  M  A  Q  K  T  H  D  F  S  P  E  K  M  T  N  L  C  R  K  I  V  Q  V  K  I  R  W  K  I  F  D  K  V  S  I  F  R  E  F  F  R  F  I  W  E  R  I  I  V  C  S  T  G  R  K  P  V  R  Y  R  R  L  S  R  R  S  S  S  S  P  V  A  M  E  E  V  E  G  Y  G  V  G  G  G  E  D  D  P  L  T  A  T  C  S  G :   L  S  M  *  V  M  N  K  K  R  G  A  C  R  R  R  D  *  T  *  W  I  K  H  *  L  Y  E  V  H  E  L  H  L  E  Y  G  M  *  E  :  V  I  I  A  H  L  I  R  F  Q  *  L  V  K  I  L  L  P  F  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31049" stop="30640"/>
                    <exon start="29570" stop="29558"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIYRSALCRRLHKVTNCSKQIIPTTKRLSKCGTQNQFLCIFLMAQKTHDFSPEKMTNLCRKIVQVKIRWKIFDKVSIFREFFRFIWERIIVCSTGRKPVRYRRLSRRSSSSPVAMEEVEGYGVGGGEDDPLTATCSGLSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30627" e_stop="30561"/>
            <exon e_start="29570" e_stop="29450"/>
            <exon e_start="29302" e_stop="29206"/>
            <exon e_start="29099" e_stop="29060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30627" e_stop="30561" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30560" i_stop="29571" i_length="990"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29570" e_stop="29450" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="29449" i_stop="29303" i_length="147"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29302" e_stop="29206" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29205" i_stop="29100" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29099" e_stop="29060" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30627" stop="30561"/>
              <exon start="29570" stop="29450"/>
              <exon start="29302" stop="29206"/>
              <exon start="29099" stop="29060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGATTTAGTTACTTTAAAGATCAGTATTTTTGGTGATTGTCAGATTGGTAAAACAAGTTTTGTG : ATTAAGTATGTAGGTGATGAACAAGAAAAGAGGTGCTTGCAGACGAAGGGATTGAACTTAATGGATAAAACATTAGTTGTACGAGGTGCACGAATTGCATTTAGAATATGGGATGTAGGAG : GTGATCATAGCTCATTTGATCAGATTCCAATAGCTTGTAAAGATTCTGTTGCCATTCTCTTTATGTTCGATCTCACTAGCCGGAGTACATTGAACAA : TGTGATAAGTTGGTATACTGAAGCAAGAAAATGGAATCAG</gDNA_template>
            <first_frame> F  R  F  S  Y  F  K  D  Q  Y  F  W  *  L  S  D  W  *  N  K  F  C   : D  *  V  C  R  *  *  T  R  K  E  V  L  A  D  E  G  I  E  L  N  G  *  N  I  S  C  T  R  C  T  N  C  I  *  N  M  G  C  R  R :   *  S  *  L  I  *  S  D  S  N  S  L  *  R  F  C  C  H  S  L  Y  V  R  S  H  *  P  E  Y  I  E  Q  :  C  D  K  L  V  Y  *  S  K  K  M  E  S  </first_frame>
            <second_frame>  S  D  L  V  T  L  K  I  S  I  F  G  D  C  Q  I  G  K  T  S  F  V  :  I  K  Y  V  G  D  E  Q  E  K  R  C  L  Q  T  K  G  L  N  L  M  D  K  T  L  V  V  R  G  A  R  I  A  F  R  I  W  D  V  G   : G  D  H  S  S  F  D  Q  I  P  I  A  C  K  D  S  V  A  I  L  F  M  F  D  L  T  S  R  S  T  L  N  N :   V  I  S  W  Y  T  E  A  R  K  W  N  Q </second_frame>
            <third_frame>   Q  I  *  L  L  *  R  S  V  F  L  V  I  V  R  L  V  K  Q  V  L  * :   L  S  M  *  V  M  N  K  K  R  G  A  C  R  R  R  D  *  T  *  W  I  K  H  *  L  Y  E  V  H  E  L  H  L  E  Y  G  M  *  E  :  V  I  I  A  H  L  I  R  F  Q  *  L  V  K  I  L  L  P  F  S  L  C  S  I  S  L  A  G  V  H  *  T   : M  *  *  V  G  I  L  K  Q  E  N  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30626" stop="30561"/>
                    <exon start="29570" stop="29450"/>
                    <exon start="29302" stop="29206"/>
                    <exon start="29099" stop="29060"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDLVTLKISIFGDCQIGKTSFVIKYVGDEQEKRCLQTKGLNLMDKTLVVRGARIAFRIWDVGGDHSSFDQIPIACKDSVAILFMFDLTSRSTLNNVISWYTEARKWNQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="54072" PGL_stop="55348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54072" e_stop="54238"/>
            <exon e_start="55041" e_stop="55348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.887" acc_prob="0.936" e_score="0.928"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="54072" e_stop="54238" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.887" acc_prob="0.936">
            <gDNA_intron_boundary i_start="54239" i_stop="55040" i_length="802"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="55041" e_stop="55348" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54072" stop="54238"/>
              <exon start="55041" stop="55348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGACGGAGACACAATAAAACAATCCAGGCGAAGTAGGAAAAGAAAGAAACAAGCTGAGCATAAATTATCTATACCAAGGTCTAAGATATACTCAGGTACCGTATCAGGGTCAAACAGCAAAAAGAAGTAGCCGCCAGTTTATGGGGGAGCAGTTTTGTATTACAG : TTATGAAGCAAATTGCTGATAACAAAGGTAGATATCGGAGAGTTCATGTTGTAGCTTTTTGAAAGATGCAGATACACTTCACCTGTGCAGCTTAGTTTGAAAAAACGCGTCTGAGTTGCTGAAGTCCGTTGCCATGCTTGAGGAACTTATTTGTTGAGTGGTAGGAGCTAAGCGTTTTAACAGGACGTTCATATTTATTGGAATTTTGCAAATCGAATTTCCTTCTTTTGCCAATTCTTACTAAGAGTGTTGAGATGAACCATGTACTGGATTACTCATTTTGTTCCTAAAACAAAAGGATTTTGCTA</gDNA_template>
            <first_frame> S  D  G  D  T  I  K  Q  S  R  R  S  R  K  R  K  K  Q  A  E  H  K  L  S  I  P  R  S  K  I  Y  S  G  T  V  S  G  S  N  S  K  K  K  *  P  P  V  Y  G  G  A  V  L  Y  Y  S :   Y  E  A  N  C  *  *  Q  R  *  I  S  E  S  S  C  C  S  F  L  K  D  A  D  T  L  H  L  C  S  L  V  *  K  N  A  S  E  L  L  K  S  V  A  M  L  E  E  L  I  C  *  V  V  G  A  K  R  F  N  R  T  F  I  F  I  G  I  L  Q  I  E  F  P  S  F  A  N  S  Y  *  E  C  *  D  E  P  C  T  G  L  L  I  L  F  L  K  Q  K  D  F  A  </first_frame>
            <second_frame>  L  T  E  T  Q  *  N  N  P  G  E  V  G  K  E  R  N  K  L  S  I  N  Y  L  Y  Q  G  L  R  Y  T  Q  V  P  Y  Q  G  Q  T  A  K  R  S  S  R  Q  F  M  G  E  Q  F  C  I  T   : V  M  K  Q  I  A  D  N  K  G  R  Y  R  R  V  H  V  V  A  F  *  K  M  Q  I  H  F  T  C  A  A  *  F  E  K  T  R  L  S  C  *  S  P  L  P  C  L  R  N  L  F  V  E  W  *  E  L  S  V  L  T  G  R  S  Y  L  L  E  F  C  K  S  N  F  L  L  L  P  I  L  T  K  S  V  E  M  N  H  V  L  D  Y  S  F  C  S  *  N  K  R  I  L  L </second_frame>
            <third_frame>   *  R  R  H  N  K  T  I  Q  A  K  *  E  K  K  E  T  S  *  A  *  I  I  Y  T  K  V  *  D  I  L  R  Y  R  I  R  V  K  Q  Q  K  E  V  A  A  S  L  W  G  S  S  F  V  L  Q  :  L  *  S  K  L  L  I  T  K  V  D  I  G  E  F  M  L  *  L  F  E  R  C  R  Y  T  S  P  V  Q  L  S  L  K  K  R  V  *  V  A  E  V  R  C  H  A  *  G  T  Y  L  L  S  G  R  S  *  A  F  *  Q  D  V  H  I  Y  W  N  F  A  N  R  I  S  F  F  C  Q  F  L  L  R  V  L  R  *  T  M  Y  W  I  T  H  F  V  P  K  T  K  G  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54091" stop="54238"/>
                    <exon start="55041" stop="55102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNPGEVGKERNKLSINYLYQGLRYTQVPYQGQTAKRSSRQFMGEQFCITVMKQIADNKGRYRRVHVVAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="56609" PGL_stop="58617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56609" e_stop="57037"/>
            <exon e_start="58174" e_stop="58355"/>
            <exon e_start="58462" e_stop="58617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="0.914"/>
          <exon-intron don_prob="0.930" acc_prob="0.998" e_score="0.945"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="56609" e_stop="57037" e_length="429"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="57038" i_stop="58173" i_length="1136"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="58174" e_stop="58355" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.930" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58356" i_stop="58461" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.917">
            <gDNA_exon_boundary e_start="58462" e_stop="58617" e_length="156"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56609" stop="57037"/>
              <exon start="58174" stop="58355"/>
              <exon start="58462" stop="58617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAAATAGTCTTTTTCTCTTCTTTTTTTTTTCTCCGGTGACCGTCGCCGCACGGTTCACCGTCGACGGGAAAATTAGGGCTAATTTTTGGGAATTTTCAAAAAATGTTCTAATTTTCCAATTGAGAATTTTGATGATAGTGTTCATGAGTATCTGTTGGCATTATTTGAATTCGTTTCGAAAAAAAAAATAACTTTCAAATTAGGTCAAAATTTCAGGCCAATATATTGTTGATGATTTTGAGGAATTTTATTTGTGCTTAAGATATGATATTAGGTAGATTAGTGAAAAGAGATTGGCTGATTTGGTTTCCATGTTGTATGACGATGGATGATAACAATCAAATTAGTTCTTTGGAAGATAGCATCATTCATCAATACAAAAGCGCCAATTCTCAAGCACAATTTGCCAACATTTCTCTTAAAACTG : ATAGCAGCAGAAGGAGATACATAGCTTCAGAAATAGAAAAGTTTGGAAAAGGGAACATTTCAGCTCAAGCCTTCACGTTCCGTGAGTTGTGTCTTGCAACTGAAAACTTCGATTCTGAATGTTTGCTTGGTTCAGGTGGGTTTGGGAAAGTGTACAAAGGCCACATTAAAAGCAAGAATATG : GCTGTTGCTGTGAAACAACTTGACAGGAATGGTTTCCAAGGAACGAAAGAGTTCCTTGTGGAGGTCCTGCTGTTGAGTCTTCTCCGTCACTCTAACCTTGTCAATTTGATAGGATACTGTTCAGACGGTGATCAGAGAATATTAGTTTACGAGCTC</gDNA_template>
            <first_frame> D  K  *  S  F  S  L  L  F  F  F  S  G  D  R  R  R  T  V  H  R  R  R  E  N  *  G  *  F  L  G  I  F  K  K  C  S  N  F  P  I  E  N  F  D  D  S  V  H  E  Y  L  L  A  L  F  E  F  V  S  K  K  K  I  T  F  K  L  G  Q  N  F  R  P  I  Y  C  *  *  F  *  G  I  L  F  V  L  K  I  *  Y  *  V  D  *  *  K  E  I  G  *  F  G  F  H  V  V  *  R  W  M  I  T  I  K  L  V  L  W  K  I  A  S  F  I  N  T  K  A  P  I  L  K  H  N  L  P  T  F  L  L  K  L  :  I  A  A  E  G  D  T  *  L  Q  K  *  K  S  L  E  K  G  T  F  Q  L  K  P  S  R  S  V  S  C  V  L  Q  L  K  T  S  I  L  N  V  C  L  V  Q  V  G  L  G  K  C  T  K  A  T  L  K  A  R  I  W :   L  L  L  *  N  N  L  T  G  M  V  S  K  E  R  K  S  S  L  W  R  S  C  C  *  V  F  S  V  T  L  T  L  S  I  *  *  D  T  V  Q  T  V  I  R  E  Y  *  F  T  S   </first_frame>
            <second_frame>  I  N  S  L  F  L  F  F  F  F  S  P  V  T  V  A  A  R  F  T  V  D  G  K  I  R  A  N  F  W  E  F  S  K  N  V  L  I  F  Q  L  R  I  L  M  I  V  F  M  S  I  C  W  H  Y  L  N  S  F  R  K  K  K  *  L  S  N  *  V  K  I  S  G  Q  Y  I  V  D  D  F  E  E  F  Y  L  C  L  R  Y  D  I  R  *  I  S  E  K  R  L  A  D  L  V  S  M  L  Y  D  D  G  *  *  Q  S  N  *  F  F  G  R  *  H  H  S  S  I  Q  K  R  Q  F  S  S  T  I  C  Q  H  F  S  *  N  * :   *  Q  Q  K  E  I  H  S  F  R  N  R  K  V  W  K  R  E  H  F  S  S  S  L  H  V  P  *  V  V  S  C  N  *  K  L  R  F  *  M  F  A  W  F  R  W  V  W  E  S  V  Q  R  P  H  *  K  Q  E  Y   : G  C  C  C  E  T  T  *  Q  E  W  F  P  R  N  E  R  V  P  C  G  G  P  A  V  E  S  S  P  S  L  *  P  C  Q  F  D  R  I  L  F  R  R  *  S  E  N  I  S  L  R  A  </second_frame>
            <third_frame>   *  I  V  F  F  S  S  F  F  F  L  R  *  P  S  P  H  G  S  P  S  T  G  K  L  G  L  I  F  G  N  F  Q  K  M  F  *  F  S  N  *  E  F  *  *  *  C  S  *  V  S  V  G  I  I  *  I  R  F  E  K  K  N  N  F  Q  I  R  S  K  F  Q  A  N  I  L  L  M  I  L  R  N  F  I  C  A  *  D  M  I  L  G  R  L  V  K  R  D  W  L  I  W  F  P  C  C  M  T  M  D  D  N  N  Q  I  S  S  L  E  D  S  I  I  H  Q  Y  K  S  A  N  S  Q  A  Q  F  A  N  I  S  L  K  T   : D  S  S  R  R  R  Y  I  A  S  E  I  E  K  F  G  K  G  N  I  S  A  Q  A  F  T  F  R  E  L  C  L  A  T  E  N  F  D  S  E  C  L  L  G  S  G  G  F  G  K  V  Y  K  G  H  I  K  S  K  N  M  :  A  V  A  V  K  Q  L  D  R  N  G  F  Q  G  T  K  E  F  L  V  E  V  L  L  L  S  L  L  R  H  S  N  L  V  N  L  I  G  Y  C  S  D  G  D  Q  R  I  L  V  Y  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56872" stop="57037"/>
                    <exon start="58174" stop="58355"/>
                    <exon start="58462" stop="58617"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMILGRLVKRDWLIWFPCCMTMDDNNQISSLEDSIIHQYKSANSQAQFANISLKTDSSRRRYIASEIEKFGKGNISAQAFTFRELCLATENFDSECLLGSGGFGKVYKGHIKSKNMAVAVKQLDRNGFQGTKEFLVEVLLLSLLRHSNLVNLIGYCSDGDQRILVYEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="60762" PGL_stop="63011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60762" e_stop="61182"/>
            <exon e_start="62636" e_stop="63011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.948"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="60762" e_stop="61182" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61183" i_stop="62635" i_length="1453"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="62636" e_stop="63011" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60762" stop="61182"/>
              <exon start="62636" stop="63011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTCTATCTCTCTGTCTCTCTCTTTCATACAGAGTACTGATTGTGTTTGTTGTGTTCTTCTTCACCATCACTTGCAGACAAACAAGAAATTAAAAACCCTTGTAAAACCCTAAAAAAAGATTCCAACTTTTACAGTTTCAACCCCATTTTTAACTTATTTTGTTTATTGTGTGGTTAAAGTTTTTAAAAAATTAAATATTTGTGAAGTTTATCAACACGGCCGCTCAGTCTCCCCTTTTGAGCTGCACTAGCAATAAGCTAGTTGGCAGAAGAAGTAGAGCTACTGCTGCTGTGGCTATGGCATTTTTGGGTCTTTCTGTTCAATCTTCCCCTTTTAAACCAACTTCTTATGTTTGGTTTTCTCCTCATTCTTTCTCTTCTCGTACTTTTTGGGCTTCTTCTGGTAAAGCCCTTCACAG : GGGGGAAGATTGCAAAACTCGGAGTATAGAAAATGCATCTTCCAGCTTAGCGGTGTTTGGCGATCCCATTAAACAAATATCAAGTCATGAAAGGAAGTTATTCTCTAGTGGATTACAACAGAAGATTGAGGAAGACAGTATTTACGGATGGAATGCTGAAATTGATGCTATTAAAGCTCTTAAAGCAAAAAACGCTTATAATAGTTATAAAAAGATTTCAGCGGCAAATTGCAGTGTTAGCGCCTCCATAGATCGGAAGGTGAATGATGAAAATTCTGATGTTCCAATTGAAGTCAATACGAGAATGATGCGTGAGCGTGTTACCTCTAGCTATTCAGCTACAACCTGTATTTCAGGAGGCAGCTTATCTTCAAAA</gDNA_template>
            <first_frame> L  F  Y  L  S  V  S  L  F  H  T  E  Y  *  L  C  L  L  C  S  S  S  P  S  L  A  D  K  Q  E  I  K  N  P  C  K  T  L  K  K  D  S  N  F  Y  S  F  N  P  I  F  N  L  F  C  L  L  C  G  *  S  F  *  K  I  K  Y  L  *  S  L  S  T  R  P  L  S  L  P  F  *  A  A  L  A  I  S  *  L  A  E  E  V  E  L  L  L  L  W  L  W  H  F  W  V  F  L  F  N  L  P  L  L  N  Q  L  L  M  F  G  F  L  L  I  L  S  L  L  V  L  F  G  L  L  L  V  K  P  F  T   : G  G  K  I  A  K  L  G  V  *  K  M  H  L  P  A  *  R  C  L  A  I  P  L  N  K  Y  Q  V  M  K  G  S  Y  S  L  V  D  Y  N  R  R  L  R  K  T  V  F  T  D  G  M  L  K  L  M  L  L  K  L  L  K  Q  K  T  L  I  I  V  I  K  R  F  Q  R  Q  I  A  V  L  A  P  P  *  I  G  R  *  M  M  K  I  L  M  F  Q  L  K  S  I  R  E  *  C  V  S  V  L  P  L  A  I  Q  L  Q  P  V  F  Q  E  A  A  Y  L  Q   </first_frame>
            <second_frame>  S  S  I  S  L  S  L  S  F  I  Q  S  T  D  C  V  C  C  V  L  L  H  H  H  L  Q  T  N  K  K  L  K  T  L  V  K  P  *  K  K  I  P  T  F  T  V  S  T  P  F  L  T  Y  F  V  Y  C  V  V  K  V  F  K  K  L  N  I  C  E  V  Y  Q  H  G  R  S  V  S  P  F  E  L  H  *  Q  *  A  S  W  Q  K  K  *  S  Y  C  C  C  G  Y  G  I  F  G  S  F  C  S  I  F  P  F  *  T  N  F  L  C  L  V  F  S  S  F  F  L  F  S  Y  F  L  G  F  F  W  *  S  P  S  Q  :  G  G  R  L  Q  N  S  E  Y  R  K  C  I  F  Q  L  S  G  V  W  R  S  H  *  T  N  I  K  S  *  K  E  V  I  L  *  W  I  T  T  E  D  *  G  R  Q  Y  L  R  M  E  C  *  N  *  C  Y  *  S  S  *  S  K  K  R  L  *  *  L  *  K  D  F  S  G  K  L  Q  C  *  R  L  H  R  S  E  G  E  *  *  K  F  *  C  S  N  *  S  Q  Y  E  N  D  A  *  A  C  Y  L  *  L  F  S  Y  N  L  Y  F  R  R  Q  L  I  F  K  </second_frame>
            <third_frame>   L  L  S  L  C  L  S  L  S  Y  R  V  L  I  V  F  V  V  F  F  F  T  I  T  C  R  Q  T  R  N  *  K  P  L  *  N  P  K  K  R  F  Q  L  L  Q  F  Q  P  H  F  *  L  I  L  F  I  V  W  L  K  F  L  K  N  *  I  F  V  K  F  I  N  T  A  A  Q  S  P  L  L  S  C  T  S  N  K  L  V  G  R  R  S  R  A  T  A  A  V  A  M  A  F  L  G  L  S  V  Q  S  S  P  F  K  P  T  S  Y  V  W  F  S  P  H  S  F  S  S  R  T  F  W  A  S  S  G  K  A  L  H  R :   G  E  D  C  K  T  R  S  I  E  N  A  S  S  S  L  A  V  F  G  D  P  I  K  Q  I  S  S  H  E  R  K  L  F  S  S  G  L  Q  Q  K  I  E  E  D  S  I  Y  G  W  N  A  E  I  D  A  I  K  A  L  K  A  K  N  A  Y  N  S  Y  K  K  I  S  A  A  N  C  S  V  S  A  S  I  D  R  K  V  N  D  E  N  S  D  V  P  I  E  V  N  T  R  M  M  R  E  R  V  T  S  S  Y  S  A  T  T  C  I  S  G  G  S  L  S  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60959" stop="61182"/>
                    <exon start="62636" stop="63011"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVKFINTAAQSPLLSCTSNKLVGRRSRATAAVAMAFLGLSVQSSPFKPTSYVWFSPHSFSSRTFWASSGKALHRGEDCKTRSIENASSSLAVFGDPIKQISSHERKLFSSGLQQKIEEDSIYGWNAEIDAIKALKAKNAYNSYKKISAANCSVSASIDRKVNDENSDVPIEVNTRMMRERVTSSYSATTCISGGSLSSK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64684" PGL_stop="69874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64684" e_stop="64816"/>
            <exon e_start="66345" e_stop="66801"/>
            <exon e_start="67697" e_stop="67792"/>
            <exon e_start="68094" e_stop="68186"/>
            <exon e_start="68266" e_stop="68460"/>
            <exon e_start="68650" e_stop="68742"/>
            <exon e_start="68871" e_stop="69083"/>
            <exon e_start="69236" e_stop="69325"/>
            <exon e_start="69742" e_stop="69874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.125" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="0.982"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.969"/>
          <exon-intron don_prob="0.999" acc_prob="0.416" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.495" e_score="1.000"/>
          <exon-intron don_prob="0.702" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64684" e_stop="64816" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.125" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64817" i_stop="66344" i_length="1528"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="66345" e_stop="66801" e_length="457"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66802" i_stop="67696" i_length="895"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="67697" e_stop="67792" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67793" i_stop="68093" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="68094" e_stop="68186" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.416">
            <gDNA_intron_boundary i_start="68187" i_stop="68265" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68266" e_stop="68460" e_length="195"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="68461" i_stop="68649" i_length="189"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68650" e_stop="68742" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68743" i_stop="68870" i_length="128"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68871" e_stop="69083" e_length="213"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.495">
            <gDNA_intron_boundary i_start="69084" i_stop="69235" i_length="152"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69236" e_stop="69325" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.702" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69326" i_stop="69741" i_length="416"/>
          </intron>
          <exon e_serial="9" e_score="0.962">
            <gDNA_exon_boundary e_start="69742" e_stop="69874" e_length="133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64684" stop="64816"/>
              <exon start="66345" stop="66801"/>
              <exon start="67697" stop="67724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64749" stop="64816"/>
              <exon start="66345" stop="66801"/>
              <exon start="67697" stop="67792"/>
              <exon start="68094" stop="68186"/>
              <exon start="68266" stop="68272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66422" stop="66801"/>
              <exon start="67697" stop="67792"/>
              <exon start="68094" stop="68153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66673" stop="66801"/>
              <exon start="67697" stop="67792"/>
              <exon start="68094" stop="68186"/>
              <exon start="68266" stop="68460"/>
              <exon start="68650" stop="68669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66768" stop="66801"/>
              <exon start="67697" stop="67792"/>
              <exon start="68094" stop="68186"/>
              <exon start="68266" stop="68460"/>
              <exon start="68650" stop="68742"/>
              <exon start="68871" stop="69083"/>
              <exon start="69236" stop="69269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68183" stop="68186"/>
              <exon start="68266" stop="68460"/>
              <exon start="68650" stop="68742"/>
              <exon start="68871" stop="69083"/>
              <exon start="69236" stop="69325"/>
              <exon start="69742" stop="69874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343049" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAAGCTGAGCAGCTGGTTGCTGTGAATAGATTTCGTAACTGGGCAGCTAAGTACTGTGCTGATGCAAAGTACATGAATGTTGGAAGTGACACACAGTTGCGTCAGCTGTTTTTTGGTGGCATCCAGAATAG : AAAGAATGTTGATGAGAGTCTACCAAATGAGAAAGAATTCAAAGTTCCGAATGTTGATAAAGTAATTGAAGAAGGAAAGAAGGCTCCCACCAAATTTCGTAAAATCCATCTACATAGGATTTGTGATCCTATCAACACTGAGATTTTCACTGCCAGTGGTTGGCCTTCCGTTAGTGGAGATGCTTTGAAGGCTCTCGCTGGCAAAGTTTCTGCAGACTTTGATATTTTTGATGAAGTGGATGGCAATGCTGAGGAAGTTCCTGAAACAAGCGTTGATGAAGCTTTAACTACAAATAACGAAGCTCTCAGTCAAAATCCAGAAATTTCAGCTTATGGAACAGCCTACCACGCCTTTGGAGGTGGGCAGAAAGGAATTGAGGCATGCCATGCCATTGCAGCCTTATGTGAAGTTTGCTCCATAGACTCTTTAATATCCAACTTTATCCTCCCCTTGCAG : GGTCATGATGTGTCTGGTGAGAATGGACGGATTCATTGCTCCCTGAATATAAATACTGAAACTGGGCGCTTGTCTGCAAGGAGACCAAATTTACAG : AATCAGCCTGCTCTTGAGAAAGATAGGTATAAAATTCGCCAAGCTTTTGTAGCTGCAGAGGGGAATTCCTTGATTGTGGCTGACTATGGGCAG : TTGGAACTTAGGATTCTTGCACATCTTGCCAACTGTAAGAGCATGTTGGGTGCATTCGAAGCTGGTGGAGACTTCCATTCAAGGACTGCCATGAATATGTATCCTCACATCCGTGAAGCTGTTGAAAAGGGGCAGGTACTTCTTGAGTGGCATCCTCAACCTGGTGAAGACAAACCACCAGTTCCTCTGCTAAAG : GATGCTTTTGGCTCTGAAAGAAGGAAAGCAAAGATGCTCAATTTTTCAATTGCGTACGGAAAAACTACAATTGGACTCTCTCGCGATTGGAAG : GTATCTGTAAAGGAAGCAAAGGAAACAGTTGAACGTTGGTATAGTGATAGAAAAGAAGTGTCAGATTGGCAAGAACAACGCAGATTTGAAGCACGTGAGTTCGGATGTGTTCACACACTTCTAGGACGAGCACGTTGGTTTCCGTCAGTAAAAAATGCAACCGGATCCGTTAAAGGTCACATAGAACGAGCTGCTATCAATACTCCAGTGCAG : GGAAGTGCTGCAGATGTCGCTATGTGCGCGATGTTAGAGATATCAAAGAATGCACGACTAAAGGAGCTTGGATGGAAATTGCTTTTACAG : GTTCATGATGAAGTTATTTTGGAAGGACCAGAAGAATCTGAGGAAGAAGCCATGGCAATAGTGGTTCACTGCATGTCCAATCCTTTTAATGGGAAAAATATTCTCAGAGTTGGCTTATCTGTCGATGCTAAAT</gDNA_template>
            <first_frame> L  K  L  S  S  W  L  L  *  I  D  F  V  T  G  Q  L  S  T  V  L  M  Q  S  T  *  M  L  E  V  T  H  S  C  V  S  C  F  L  V  A  S  R  I   : E  R  M  L  M  R  V  Y  Q  M  R  K  N  S  K  F  R  M  L  I  K  *  L  K  K  E  R  R  L  P  P  N  F  V  K  S  I  Y  I  G  F  V  I  L  S  T  L  R  F  S  L  P  V  V  G  L  P  L  V  E  M  L  *  R  L  S  L  A  K  F  L  Q  T  L  I  F  L  M  K  W  M  A  M  L  R  K  F  L  K  Q  A  L  M  K  L  *  L  Q  I  T  K  L  S  V  K  I  Q  K  F  Q  L  M  E  Q  P  T  T  P  L  E  V  G  R  K  E  L  R  H  A  M  P  L  Q  P  Y  V  K  F  A  P  *  T  L  *  Y  P  T  L  S  S  P  C  R :   V  M  M  C  L  V  R  M  D  G  F  I  A  P  *  I  *  I  L  K  L  G  A  C  L  Q  G  D  Q  I  Y  R :   I  S  L  L  L  R  K  I  G  I  K  F  A  K  L  L  *  L  Q  R  G  I  P  *  L  W  L  T  M  G  S :   W  N  L  G  F  L  H  I  L  P  T  V  R  A  C  W  V  H  S  K  L  V  E  T  S  I  Q  G  L  P  *  I  C  I  L  T  S  V  K  L  L  K  R  G  R  Y  F  L  S  G  I  L  N  L  V  K  T  N  H  Q  F  L  C  *  R :   M  L  L  A  L  K  E  G  K  Q  R  C  S  I  F  Q  L  R  T  E  K  L  Q  L  D  S  L  A  I  G  R :   Y  L  *  R  K  Q  R  K  Q  L  N  V  G  I  V  I  E  K  K  C  Q  I  G  K  N  N  A  D  L  K  H  V  S  S  D  V  F  T  H  F  *  D  E  H  V  G  F  R  Q  *  K  M  Q  P  D  P  L  K  V  T  *  N  E  L  L  S  I  L  Q  C  R :   E  V  L  Q  M  S  L  C  A  R  C  *  R  Y  Q  R  M  H  D  *  R  S  L  D  G  N  C  F  Y  R :   F  M  M  K  L  F  W  K  D  Q  K  N  L  R  K  K  P  W  Q  *  W  F  T  A  C  P  I  L  L  M  G  K  I  F  S  E  L  A  Y  L  S  M  L  N </first_frame>
            <second_frame>  *  S  *  A  A  G  C  C  E  *  I  S  *  L  G  S  *  V  L  C  *  C  K  V  H  E  C  W  K  *  H  T  V  A  S  A  V  F  W  W  H  P  E  *  :  K  E  C  *  *  E  S  T  K  *  E  R  I  Q  S  S  E  C  *  *  S  N  *  R  R  K  E  G  S  H  Q  I  S  *  N  P  S  T  *  D  L  *  S  Y  Q  H  *  D  F  H  C  Q  W  L  A  F  R  *  W  R  C  F  E  G  S  R  W  Q  S  F  C  R  L  *  Y  F  *  *  S  G  W  Q  C  *  G  S  S  *  N  K  R  *  *  S  F  N  Y  K  *  R  S  S  Q  S  K  S  R  N  F  S  L  W  N  S  L  P  R  L  W  R  W  A  E  R  N  *  G  M  P  C  H  C  S  L  M  *  S  L  L  H  R  L  F  N  I  Q  L  Y  P  P  L  A   : G  S  *  C  V  W  *  E  W  T  D  S  L  L  P  E  Y  K  Y  *  N  W  A  L  V  C  K  E  T  K  F  T   : E  S  A  C  S  *  E  R  *  V  *  N  S  P  S  F  C  S  C  R  G  E  F  L  D  C  G  *  L  W  A   : V  G  T  *  D  S  C  T  S  C  Q  L  *  E  H  V  G  C  I  R  S  W  W  R  L  P  F  K  D  C  H  E  Y  V  S  S  H  P  *  S  C  *  K  G  A  G  T  S  *  V  A  S  S  T  W  *  R  Q  T  T  S  S  S  A  K   : G  C  F  W  L  *  K  K  E  S  K  D  A  Q  F  F  N  C  V  R  K  N  Y  N  W  T  L  S  R  L  E   : G  I  C  K  G  S  K  G  N  S  *  T  L  V  *  *  *  K  R  S  V  R  L  A  R  T  T  Q  I  *  S  T  *  V  R  M  C  S  H  T  S  R  T  S  T  L  V  S  V  S  K  K  C  N  R  I  R  *  R  S  H  R  T  S  C  Y  Q  Y  S  S  A   : G  K  C  C  R  C  R  Y  V  R  D  V  R  D  I  K  E  C  T  T  K  G  A  W  M  E  I  A  F  T   : G  S  *  *  S  Y  F  G  R  T  R  R  I  *  G  R  S  H  G  N  S  G  S  L  H  V  Q  S  F  *  W  E  K  Y  S  Q  S  W  L  I  C  R  C  *   </second_frame>
            <third_frame>   K  A  E  Q  L  V  A  V  N  R  F  R  N  W  A  A  K  Y  C  A  D  A  K  Y  M  N  V  G  S  D  T  Q  L  R  Q  L  F  F  G  G  I  Q  N  R :   K  N  V  D  E  S  L  P  N  E  K  E  F  K  V  P  N  V  D  K  V  I  E  E  G  K  K  A  P  T  K  F  R  K  I  H  L  H  R  I  C  D  P  I  N  T  E  I  F  T  A  S  G  W  P  S  V  S  G  D  A  L  K  A  L  A  G  K  V  S  A  D  F  D  I  F  D  E  V  D  G  N  A  E  E  V  P  E  T  S  V  D  E  A  L  T  T  N  N  E  A  L  S  Q  N  P  E  I  S  A  Y  G  T  A  Y  H  A  F  G  G  G  Q  K  G  I  E  A  C  H  A  I  A  A  L  C  E  V  C  S  I  D  S  L  I  S  N  F  I  L  P  L  Q  :  G  H  D  V  S  G  E  N  G  R  I  H  C  S  L  N  I  N  T  E  T  G  R  L  S  A  R  R  P  N  L  Q  :  N  Q  P  A  L  E  K  D  R  Y  K  I  R  Q  A  F  V  A  A  E  G  N  S  L  I  V  A  D  Y  G  Q  :  L  E  L  R  I  L  A  H  L  A  N  C  K  S  M  L  G  A  F  E  A  G  G  D  F  H  S  R  T  A  M  N  M  Y  P  H  I  R  E  A  V  E  K  G  Q  V  L  L  E  W  H  P  Q  P  G  E  D  K  P  P  V  P  L  L  K  :  D  A  F  G  S  E  R  R  K  A  K  M  L  N  F  S  I  A  Y  G  K  T  T  I  G  L  S  R  D  W  K  :  V  S  V  K  E  A  K  E  T  V  E  R  W  Y  S  D  R  K  E  V  S  D  W  Q  E  Q  R  R  F  E  A  R  E  F  G  C  V  H  T  L  L  G  R  A  R  W  F  P  S  V  K  N  A  T  G  S  V  K  G  H  I  E  R  A  A  I  N  T  P  V  Q  :  G  S  A  A  D  V  A  M  C  A  M  L  E  I  S  K  N  A  R  L  K  E  L  G  W  K  L  L  L  Q  :  V  H  D  E  V  I  L  E  G  P  E  E  S  E  E  E  A  M  A  I  V  V  H  C  M  S  N  P  F  N  G  K  N  I  L  R  V  G  L  S  V  D  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64686" stop="64816"/>
                    <exon start="66345" stop="66801"/>
                    <exon start="67697" stop="67792"/>
                    <exon start="68094" stop="68186"/>
                    <exon start="68266" stop="68460"/>
                    <exon start="68650" stop="68742"/>
                    <exon start="68871" stop="69083"/>
                    <exon start="69236" stop="69325"/>
                    <exon start="69742" stop="69873"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAEQLVAVNRFRNWAAKYCADAKYMNVGSDTQLRQLFFGGIQNRKNVDESLPNEKEFKVPNVDKVIEEGKKAPTKFRKIHLHRICDPINTEIFTASGWPSVSGDALKALAGKVSADFDIFDEVDGNAEEVPETSVDEALTTNNEALSQNPEISAYGTAYHAFGGGQKGIEACHAIAALCEVCSIDSLISNFILPLQGHDVSGENGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFVAAEGNSLIVADYGQLELRILAHLANCKSMLGAFEAGGDFHSRTAMNMYPHIREAVEKGQVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLSRDWKVSVKEAKETVERWYSDRKEVSDWQEQRRFEAREFGCVHTLLGRARWFPSVKNATGSVKGHIERAAINTPVQGSAADVAMCAMLEISKNARLKELGWKLLLQVHDEVILEGPEESEEEAMAIVVHCMSNPFNGKNILRVGLSVDAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="70925" PGL_stop="72948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70925" e_stop="71069"/>
            <exon e_start="72390" e_stop="72948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70925" e_stop="71069" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.957">
            <gDNA_intron_boundary i_start="71070" i_stop="72389" i_length="1320"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="72390" e_stop="72948" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70925" stop="71069"/>
              <exon start="72390" stop="72948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGGTGTGGGTAGGGCCCAACAATTTACAAATTATTGATGAATCATAACACAATATGCTTTTCTGCAGAGTGACACAAAGGGGGCATTGAATATTTGCTGTCAAACCCCTCCATTGACAGAGGGGACTTGCTCATCTTTATCAG : GGTTTATCTAAATATCTGGTAGAGCAACCTCGGAATATCTGGAGAGAATTATGGTTCAGACATTAGAGACCATAAGGGGTGGTGGAGGTTCGATTAAAGTTGGAACAACTGGTACGATCAGTGCCCTCATGTCAAGAGAATTAGATTCAAAACCATCTGCTTCTACGACATCTGTACCACGTAGGTATAGGTCTCCTACTGTTTGTTCATTTGCTGCTGGTGATGCAACCAGTCCTAAAAGAACAAAGCCAAGAACATCAATCGATAAAGCTAGCAGCAGCTGGGCATCTGAAGATCATAAAAATGACTCCGAGATAATTAGGAAGGCGAAGCAGTACTACAATTGTAGAACTCCTCAACTTCCAATACTAGAATCAGAAAACATTTCAGTAGATGGAACTCCTATTAGGAAGAAACCTGATAGAAAGGGACTGGCGTTAGTTGAAATCGTGGACATAAAATGTGGTAGTTCGGGAAAAACACGTGCAAACCTTATGAAGAATAGTCTGAAGAAGATAAGCTTCTCAAAACTTTCTGAGAGCCCTGTTTAGGCATGTGA</gDNA_template>
            <first_frame> K  G  V  G  R  A  Q  Q  F  T  N  Y  *  *  I  I  T  Q  Y  A  F  L  Q  S  D  T  K  G  A  L  N  I  C  C  Q  T  P  P  L  T  E  G  T  C  S  S  L  S   : G  F  I  *  I  S  G  R  A  T  S  E  Y  L  E  R  I  M  V  Q  T  L  E  T  I  R  G  G  G  G  S  I  K  V  G  T  T  G  T  I  S  A  L  M  S  R  E  L  D  S  K  P  S  A  S  T  T  S  V  P  R  R  Y  R  S  P  T  V  C  S  F  A  A  G  D  A  T  S  P  K  R  T  K  P  R  T  S  I  D  K  A  S  S  S  W  A  S  E  D  H  K  N  D  S  E  I  I  R  K  A  K  Q  Y  Y  N  C  R  T  P  Q  L  P  I  L  E  S  E  N  I  S  V  D  G  T  P  I  R  K  K  P  D  R  K  G  L  A  L  V  E  I  V  D  I  K  C  G  S  S  G  K  T  R  A  N  L  M  K  N  S  L  K  K  I  S  F  S  K  L  S  E  S  P  V  *  A  C   </first_frame>
            <second_frame>  K  V  W  V  G  P  N  N  L  Q  I  I  D  E  S  *  H  N  M  L  F  C  R  V  T  Q  R  G  H  *  I  F  A  V  K  P  L  H  *  Q  R  G  L  A  H  L  Y  Q  :  G  L  S  K  Y  L  V  E  Q  P  R  N  I  W  R  E  L  W  F  R  H  *  R  P  *  G  V  V  E  V  R  L  K  L  E  Q  L  V  R  S  V  P  S  C  Q  E  N  *  I  Q  N  H  L  L  L  R  H  L  Y  H  V  G  I  G  L  L  L  F  V  H  L  L  L  V  M  Q  P  V  L  K  E  Q  S  Q  E  H  Q  S  I  K  L  A  A  A  G  H  L  K  I  I  K  M  T  P  R  *  L  G  R  R  S  S  T  T  I  V  E  L  L  N  F  Q  Y  *  N  Q  K  T  F  Q  *  M  E  L  L  L  G  R  N  L  I  E  R  D  W  R  *  L  K  S  W  T  *  N  V  V  V  R  E  K  H  V  Q  T  L  *  R  I  V  *  R  R  *  A  S  Q  N  F  L  R  A  L  F  R  H  V  </second_frame>
            <third_frame>   R  C  G  *  G  P  T  I  Y  K  L  L  M  N  H  N  T  I  C  F  S  A  E  *  H  K  G  G  I  E  Y  L  L  S  N  P  S  I  D  R  G  D  L  L  I  F  I  R :   V  Y  L  N  I  W  *  S  N  L  G  I  S  G  E  N  Y  G  S  D  I  R  D  H  K  G  W  W  R  F  D  *  S  W  N  N  W  Y  D  Q  C  P  H  V  K  R  I  R  F  K  T  I  C  F  Y  D  I  C  T  T  *  V  *  V  S  Y  C  L  F  I  C  C  W  *  C  N  Q  S  *  K  N  K  A  K  N  I  N  R  *  S  *  Q  Q  L  G  I  *  R  S  *  K  *  L  R  D  N  *  E  G  E  A  V  L  Q  L  *  N  S  S  T  S  N  T  R  I  R  K  H  F  S  R  W  N  S  Y  *  E  E  T  *  *  K  G  T  G  V  S  *  N  R  G  H  K  M  W  *  F  G  K  N  T  C  K  P  Y  E  E  *  S  E  E  D  K  L  L  K  T  F  *  E  P  C  L  G  M  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72401" stop="72940"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISGRATSEYLERIMVQTLETIRGGGGSIKVGTTGTISALMSRELDSKPSASTTSVPRRYRSPTVCSFAAGDATSPKRTKPRTSIDKASSSWASEDHKNDSEIIRKAKQYYNCRTPQLPILESENISVDGTPIRKKPDRKGLALVEIVDIKCGSSGKTRANLMKNSLKKISFSKLSESPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72379" e_stop="72773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="72379" e_stop="72773" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72379" stop="72773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTTCACAGGGTTTATCTAAATATCTGGTAGAGCAACCTCGGAATATCTGGAGAGAATTATGGTTCAGACATTAGAGACCATAAGGGGTGGTGGAGGTTCGATTAAAGTTGGAACAACTGGTACGATCAGTGCCCTCATGTCAAGAGAATTAGATTCAAAACCATCTGCTTCTACGACATCTGTACCACGTAGGTATAGGTCTCCTACTGTTTGTTCATTTGCTGCTGGTGATGCAACCAGTCCTAAAAGAACAAAGCCAAGAACATCAATCGATAAAGCTAGCAGCAGCTGGGCATCTGAAGATCATAAAAATGACTCCGAGATAATTAGGAAGGCGAAGCAGTACTACAATTGTAGAACTCCTCAACTTCCAATACTAGAATCAGAAAACA</gDNA_template>
            <first_frame> L  F  H  R  V  Y  L  N  I  W  *  S  N  L  G  I  S  G  E  N  Y  G  S  D  I  R  D  H  K  G  W  W  R  F  D  *  S  W  N  N  W  Y  D  Q  C  P  H  V  K  R  I  R  F  K  T  I  C  F  Y  D  I  C  T  T  *  V  *  V  S  Y  C  L  F  I  C  C  W  *  C  N  Q  S  *  K  N  K  A  K  N  I  N  R  *  S  *  Q  Q  L  G  I  *  R  S  *  K  *  L  R  D  N  *  E  G  E  A  V  L  Q  L  *  N  S  S  T  S  N  T  R  I  R  K   </first_frame>
            <second_frame>  Y  F  T  G  F  I  *  I  S  G  R  A  T  S  E  Y  L  E  R  I  M  V  Q  T  L  E  T  I  R  G  G  G  G  S  I  K  V  G  T  T  G  T  I  S  A  L  M  S  R  E  L  D  S  K  P  S  A  S  T  T  S  V  P  R  R  Y  R  S  P  T  V  C  S  F  A  A  G  D  A  T  S  P  K  R  T  K  P  R  T  S  I  D  K  A  S  S  S  W  A  S  E  D  H  K  N  D  S  E  I  I  R  K  A  K  Q  Y  Y  N  C  R  T  P  Q  L  P  I  L  E  S  E  N  </second_frame>
            <third_frame>   I  S  Q  G  L  S  K  Y  L  V  E  Q  P  R  N  I  W  R  E  L  W  F  R  H  *  R  P  *  G  V  V  E  V  R  L  K  L  E  Q  L  V  R  S  V  P  S  C  Q  E  N  *  I  Q  N  H  L  L  L  R  H  L  Y  H  V  G  I  G  L  L  L  F  V  H  L  L  L  V  M  Q  P  V  L  K  E  Q  S  Q  E  H  Q  S  I  K  L  A  A  A  G  H  L  K  I  I  K  M  T  P  R  *  L  G  R  R  S  S  T  T  I  V  E  L  L  N  F  Q  Y  *  N  Q  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72401" stop="72772"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISGRATSEYLERIMVQTLETIRGGGGSIKVGTTGTISALMSRELDSKPSASTTSVPRRYRSPTVCSFAAGDATSPKRTKPRTSIDKASSSWASEDHKNDSEIIRKAKQYYNCRTPQLPILESEN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="74119" PGL_stop="73009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74119" e_stop="74095"/>
            <exon e_start="73485" e_stop="73009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.258" e_score="0.760"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.760">
            <gDNA_exon_boundary e_start="74119" e_stop="74095" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.258">
            <gDNA_intron_boundary i_start="74094" i_stop="73486" i_length="609"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73485" e_stop="73009" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74119" stop="74095"/>
              <exon start="73485" stop="73009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203204" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTTTTTTGGTTGTATCAAG : TTAAAAGTTGAGCAACTTTATTAACAACACATGAATAAGGTGATTGCCAGGCTGCTCAATTTTTCATTACATTACTTTCCAGTTGATCACATTGAGAAGATATGTCAAAGAAATCGCGCAAAAAAATACATGAACCTAACCAAAATGACCGACTCTCATGTCAGGCAGGATGATATCTCTTCAAACATTACACAGGCCATAACAGCTTACGCTTTATAGTTGCTGAGAAGATGACTGCTAAAGTTTCTACAGCTGAAATAGGCAGCTGAGGCACAATTGAACGCCTTGTCTTGCAAGGAATCGATAACTTCAGTAACCTGGAAAATAGGCCATCAAGATAATCTGTGTAGCAACCTTTGGCAACTTGCAGATGTGTCTTCAGCTAGCAGTTAGACGAGACAAAAGGTTTGGATTGTTTCGTTGGTAATAAAACAAATAAAAGAATGGGAGCAGTAGGCTCATAACCAGCATCTGTTC</gDNA_template>
            <first_frame> F  F  F  F  W  L  Y  Q   : V  K  S  *  A  T  L  L  T  T  H  E  *  G  D  C  Q  A  A  Q  F  F  I  T  L  L  S  S  *  S  H  *  E  D  M  S  K  K  S  R  K  K  I  H  E  P  N  Q  N  D  R  L  S  C  Q  A  G  *  Y  L  F  K  H  Y  T  G  H  N  S  L  R  F  I  V  A  E  K  M  T  A  K  V  S  T  A  E  I  G  S  *  G  T  I  E  R  L  V  L  Q  G  I  D  N  F  S  N  L  E  N  R  P  S  R  *  S  V  *  Q  P  L  A  T  C  R  C  V  F  S  *  Q  L  D  E  T  K  G  L  D  C  F  V  G  N  K  T  N  K  R  M  G  A  V  G  S  *  P  A  S  V  </first_frame>
            <second_frame>  F  F  F  F  G  C  I  K  :  L  K  V  E  Q  L  Y  *  Q  H  M  N  K  V  I  A  R  L  L  N  F  S  L  H  Y  F  P  V  D  H  I  E  K  I  C  Q  R  N  R  A  K  K  Y  M  N  L  T  K  M  T  D  S  H  V  R  Q  D  D  I  S  S  N  I  T  Q  A  I  T  A  Y  A  L  *  L  L  R  R  *  L  L  K  F  L  Q  L  K  *  A  A  E  A  Q  L  N  A  L  S  C  K  E  S  I  T  S  V  T  W  K  I  G  H  Q  D  N  L  C  S  N  L  W  Q  L  A  D  V  S  S  A  S  S  *  T  R  Q  K  V  W  I  V  S  L  V  I  K  Q  I  K  E  W  E  Q  *  A  H  N  Q  H  L  F </second_frame>
            <third_frame>   F  F  F  L  V  V  S  S :   *  K  L  S  N  F  I  N  N  T  *  I  R  *  L  P  G  C  S  I  F  H  Y  I  T  F  Q  L  I  T  L  R  R  Y  V  K  E  I  A  Q  K  N  T  *  T  *  P  K  *  P  T  L  M  S  G  R  M  I  S  L  Q  T  L  H  R  P  *  Q  L  T  L  Y  S  C  *  E  D  D  C  *  S  F  Y  S  *  N  R  Q  L  R  H  N  *  T  P  C  L  A  R  N  R  *  L  Q  *  P  G  K  *  A  I  K  I  I  C  V  A  T  F  G  N  L  Q  M  C  L  Q  L  A  V  R  R  D  K  R  F  G  L  F  R  W  *  *  N  K  *  K  N  G  S  S  R  L  I  T  S  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73461" stop="73267"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHMNKVIARLLNFSLHYFPVDHIEKICQRNRAKKYMNLTKMTDSHVRQDDISSNITQAITAYAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="74171" PGL_stop="76572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74171" e_stop="74424"/>
            <exon e_start="75923" e_stop="76572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.911" e_score="0.969"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="74171" e_stop="74424" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.911">
            <gDNA_intron_boundary i_start="74425" i_stop="75922" i_length="1498"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="75923" e_stop="76572" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74171" stop="74424"/>
              <exon start="75923" stop="76269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74237" stop="74424"/>
              <exon start="75923" stop="76186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74284" stop="74424"/>
              <exon start="75923" stop="76521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74284" stop="74424"/>
              <exon start="75923" stop="76515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74284" stop="74424"/>
              <exon start="75923" stop="76455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74284" stop="74424"/>
              <exon start="75923" stop="76424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74284" stop="74424"/>
              <exon start="75923" stop="76412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74287" stop="74424"/>
              <exon start="75923" stop="76096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74294" stop="74424"/>
              <exon start="75923" stop="76460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74303" stop="74424"/>
              <exon start="75923" stop="76197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74318" stop="74424"/>
              <exon start="75923" stop="76462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74354" stop="74424"/>
              <exon start="75923" stop="76572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAGAATAAGTTATATATATTTTTTTTTAAAATCAAAAAGAAGAGAAAATCTACAGTGAACCCTTATATAAAAGCTTCCAATTTGCACCCTAGAGTGAAAAAGATTGCAGCTTTTGCATCCAAATAGTGAAAATTGAGGTATATTTGAAGTGGGGTTTGAGTAGAAAAGGATAAAGAGAGATTTATCAGGCAGCAAAGGCTTTGCCGCCGGTGAAAGAATTTCGTAAAACGAATAGCTAAGCAGTTATCAG : AACTCTCCACTTGAAGTTTGCTGCTTCCCGAGCTACTTTTTTTATTGATACTCAGAAAGACATCATGGCTGTTTGTGGTTCAAGGACTCATATTGGGCATTTCGTTGGCAATATGACTGCTAGGCGCCTGCAGTGTAGTTTGTCAGTAAAGGGTTGTACTGTTTCTTACAACAAAAGAGGCTTACAAAATGTTAGTAAAGCTAACATCAATTTGGGAAACAAAGGACGGCCCAACAACTTCATGCTTTACCAATATTTGACGACTAATGTTGCAAAGAGGAGGACTAACCTCAATCCACACAAAGGCTTTGGATTGGAAGGTTTTCGCAATTTATCCCACGAATGTTTCTATTCTGGAACTGCCTCTGCTTCTAATGTGTCTTCTGATAATTCTAAGGGCACGGAACAAGTTGTTGACGTTGTTAATTCTTCTGAAGCACAGATCCCCTTGCAGCTAAACTCGGGATCTTTTTACCTACCTCATCCTGCTAAAGCAAAAACTGGTGGAGAGGATGCTCATTTTATTTGTACCCTTACGCCAGCAATCGGTGTAGCTGATGGTGTTGGTGGATGGGCTGATCTTGGTATTGATGCTGGACTATATGCCCGTGAATTGATGTCTCACTCTTTATCTGCAATTCAAGATGAAC</gDNA_template>
            <first_frame> K  R  E  *  V  I  Y  I  F  F  *  N  Q  K  E  E  K  I  Y  S  E  P  L  Y  K  S  F  Q  F  A  P  *  S  E  K  D  C  S  F  C  I  Q  I  V  K  I  E  V  Y  L  K  W  G  L  S  R  K  G  *  R  E  I  Y  Q  A  A  K  A  L  P  P  V  K  E  F  R  K  T  N  S  *  A  V  I  R :   T  L  H  L  K  F  A  A  S  R  A  T  F  F  I  D  T  Q  K  D  I  M  A  V  C  G  S  R  T  H  I  G  H  F  V  G  N  M  T  A  R  R  L  Q  C  S  L  S  V  K  G  C  T  V  S  Y  N  K  R  G  L  Q  N  V  S  K  A  N  I  N  L  G  N  K  G  R  P  N  N  F  M  L  Y  Q  Y  L  T  T  N  V  A  K  R  R  T  N  L  N  P  H  K  G  F  G  L  E  G  F  R  N  L  S  H  E  C  F  Y  S  G  T  A  S  A  S  N  V  S  S  D  N  S  K  G  T  E  Q  V  V  D  V  V  N  S  S  E  A  Q  I  P  L  Q  L  N  S  G  S  F  Y  L  P  H  P  A  K  A  K  T  G  G  E  D  A  H  F  I  C  T  L  T  P  A  I  G  V  A  D  G  V  G  G  W  A  D  L  G  I  D  A  G  L  Y  A  R  E  L  M  S  H  S  L  S  A  I  Q  D  E  </first_frame>
            <second_frame>  K  E  N  K  L  Y  I  F  F  F  K  I  K  K  K  R  K  S  T  V  N  P  Y  I  K  A  S  N  L  H  P  R  V  K  K  I  A  A  F  A  S  K  *  *  K  L  R  Y  I  *  S  G  V  *  V  E  K  D  K  E  R  F  I  R  Q  Q  R  L  C  R  R  *  K  N  F  V  K  R  I  A  K  Q  L  S   : E  L  S  T  *  S  L  L  L  P  E  L  L  F  L  L  I  L  R  K  T  S  W  L  F  V  V  Q  G  L  I  L  G  I  S  L  A  I  *  L  L  G  A  C  S  V  V  C  Q  *  R  V  V  L  F  L  T  T  K  E  A  Y  K  M  L  V  K  L  T  S  I  W  E  T  K  D  G  P  T  T  S  C  F  T  N  I  *  R  L  M  L  Q  R  G  G  L  T  S  I  H  T  K  A  L  D  W  K  V  F  A  I  Y  P  T  N  V  S  I  L  E  L  P  L  L  L  M  C  L  L  I  I  L  R  A  R  N  K  L  L  T  L  L  I  L  L  K  H  R  S  P  C  S  *  T  R  D  L  F  T  Y  L  I  L  L  K  Q  K  L  V  E  R  M  L  I  L  F  V  P  L  R  Q  Q  S  V  *  L  M  V  L  V  D  G  L  I  L  V  L  M  L  D  Y  M  P  V  N  *  C  L  T  L  Y  L  Q  F  K  M  N </second_frame>
            <third_frame>   K  R  I  S  Y  I  Y  F  F  L  K  S  K  R  R  E  N  L  Q  *  T  L  I  *  K  L  P  I  C  T  L  E  *  K  R  L  Q  L  L  H  P  N  S  E  N  *  G  I  F  E  V  G  F  E  *  K  R  I  K  R  D  L  S  G  S  K  G  F  A  A  G  E  R  I  S  *  N  E  *  L  S  S  Y  Q  :  N  S  P  L  E  V  C  C  F  P  S  Y  F  F  Y  *  Y  S  E  R  H  H  G  C  L  W  F  K  D  S  Y  W  A  F  R  W  Q  Y  D  C  *  A  P  A  V  *  F  V  S  K  G  L  Y  C  F  L  Q  Q  K  R  L  T  K  C  *  *  S  *  H  Q  F  G  K  Q  R  T  A  Q  Q  L  H  A  L  P  I  F  D  D  *  C  C  K  E  E  D  *  P  Q  S  T  Q  R  L  W  I  G  R  F  S  Q  F  I  P  R  M  F  L  F  W  N  C  L  C  F  *  C  V  F  *  *  F  *  G  H  G  T  S  C  *  R  C  *  F  F  *  S  T  D  P  L  A  A  K  L  G  I  F  L  P  T  S  S  C  *  S  K  N  W  W  R  G  C  S  F  Y  L  Y  P  Y  A  S  N  R  C  S  *  W  C  W  W  M  G  *  S  W  Y  *  C  W  T  I  C  P  *  I  D  V  S  L  F  I  C  N  S  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74414" stop="74424"/>
                    <exon start="75923" stop="76571"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVIRTLHLKFAASRATFFIDTQKDIMAVCGSRTHIGHFVGNMTARRLQCSLSVKGCTVSYNKRGLQNVSKANINLGNKGRPNNFMLYQYLTTNVAKRRTNLNPHKGFGLEGFRNLSHECFYSGTASASNVSSDNSKGTEQVVDVVNSSEAQIPLQLNSGSFYLPHPAKAKTGGEDAHFICTLTPAIGVADGVGGWADLGIDAGLYARELMSHSLSAIQDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="76687" PGL_stop="77379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76687" e_stop="77379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="76687" e_stop="77379" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76687" stop="77355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76783" stop="77379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTTAGGAGATAGCGGATTTATGTTGGTTAGAAATGGATGTGCTGCATTTAAATCCCCTTCACAGCAGCATGGGTTTAATTTCCCATATCAACTAGATTGCAACAACGCAGGTGATTCACCTAGCTCTGCCATGGTATTCAAAATTACTGCTTTACCTGGAGATGTCCTAATTGTTGGTACAGATGGGCTTTTTGATAATTTGTATGACGAAGATATCAGTGGAGTTGTATTTCAGGCCATGGAAGATGGCTTAGCGCCTCAGATGACTGCTCAGCGGATAGCAGAACTGGCACAACTAAGAGCAATGGATCATATCAAGTCTTCGCCTTTCTCTGATGGAGCTCGCGAGGCTGGATTTGATTACCATGGTGGGAAGCTGGACGACATCACCGTAGTTGTTTCTTACATAACAGAGTAAAATTGAAAATCCACACCATGTCACAATATTCAGTGATACTATTGGAACAGAATCAAAAGCTGAAGGAGAGTCATACAATACAGCAACTTTGATTTGTTTCTAAAACAAAGACACACAAATCAAAGACAAGAATGAGAAGGCTTCAGCAGCATCTTGGGTCTAGCTCAGTTCACCTCAGTTTGATACAAGTGTTTTACTTTATGAAATTCAAATAGCATGTTGGGATCATTAACATTTATTTGATGGAGGATTTTCTTCTGTATTTTTGTTT</gDNA_template>
            <first_frame> L  I  *  E  I  A  D  L  C  W  L  E  M  D  V  L  H  L  N  P  L  H  S  S  M  G  L  I  S  H  I  N  *  I  A  T  T  Q  V  I  H  L  A  L  P  W  Y  S  K  L  L  L  Y  L  E  M  S  *  L  L  V  Q  M  G  F  L  I  I  C  M  T  K  I  S  V  E  L  Y  F  R  P  W  K  M  A  *  R  L  R  *  L  L  S  G  *  Q  N  W  H  N  *  E  Q  W  I  I  S  S  L  R  L  S  L  M  E  L  A  R  L  D  L  I  T  M  V  G  S  W  T  T  S  P  *  L  F  L  T  *  Q  S  K  I  E  N  P  H  H  V  T  I  F  S  D  T  I  G  T  E  S  K  A  E  G  E  S  Y  N  T  A  T  L  I  C  F  *  N  K  D  T  Q  I  K  D  K  N  E  K  A  S  A  A  S  W  V  *  L  S  S  P  Q  F  D  T  S  V  L  L  Y  E  I  Q  I  A  C  W  D  H  *  H  L  F  D  G  G  F  S  S  V  F  L  F </first_frame>
            <second_frame>  *  F  R  R  *  R  I  Y  V  G  *  K  W  M  C  C  I  *  I  P  F  T  A  A  W  V  *  F  P  I  S  T  R  L  Q  Q  R  R  *  F  T  *  L  C  H  G  I  Q  N  Y  C  F  T  W  R  C  P  N  C  W  Y  R  W  A  F  *  *  F  V  *  R  R  Y  Q  W  S  C  I  S  G  H  G  R  W  L  S  A  S  D  D  C  S  A  D  S  R  T  G  T  T  K  S  N  G  S  Y  Q  V  F  A  F  L  *  W  S  S  R  G  W  I  *  L  P  W  W  E  A  G  R  H  H  R  S  C  F  L  H  N  R  V  K  L  K  I  H  T  M  S  Q  Y  S  V  I  L  L  E  Q  N  Q  K  L  K  E  S  H  T  I  Q  Q  L  *  F  V  S  K  T  K  T  H  K  S  K  T  R  M  R  R  L  Q  Q  H  L  G  S  S  S  V  H  L  S  L  I  Q  V  F  Y  F  M  K  F  K  *  H  V  G  I  I  N  I  Y  L  M  E  D  F  L  L  Y  F  C   </second_frame>
            <third_frame>   N  L  G  D  S  G  F  M  L  V  R  N  G  C  A  A  F  K  S  P  S  Q  Q  H  G  F  N  F  P  Y  Q  L  D  C  N  N  A  G  D  S  P  S  S  A  M  V  F  K  I  T  A  L  P  G  D  V  L  I  V  G  T  D  G  L  F  D  N  L  Y  D  E  D  I  S  G  V  V  F  Q  A  M  E  D  G  L  A  P  Q  M  T  A  Q  R  I  A  E  L  A  Q  L  R  A  M  D  H  I  K  S  S  P  F  S  D  G  A  R  E  A  G  F  D  Y  H  G  G  K  L  D  D  I  T  V  V  V  S  Y  I  T  E  *  N  *  K  S  T  P  C  H  N  I  Q  *  Y  Y  W  N  R  I  K  S  *  R  R  V  I  Q  Y  S  N  F  D  L  F  L  K  Q  R  H  T  N  Q  R  Q  E  *  E  G  F  S  S  I  L  G  L  A  Q  F  T  S  V  *  Y  K  C  F  T  L  *  N  S  N  S  M  L  G  S  L  T  F  I  *  W  R  I  F  F  C  I  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76689" stop="77108"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLGDSGFMLVRNGCAAFKSPSQQHGFNFPYQLDCNNAGDSPSSAMVFKITALPGDVLIVGTDGLFDNLYDEDISGVVFQAMEDGLAPQMTAQRIAELAQLRAMDHIKSSPFSDGAREAGFDYHGGKLDDITVVVSYITE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="82494" PGL_stop="77477"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82449" e_stop="82390"/>
            <exon e_start="82339" e_stop="82169"/>
            <exon e_start="81411" e_stop="81299"/>
            <exon e_start="80684" e_stop="80606"/>
            <exon e_start="80032" e_stop="80004"/>
            <exon e_start="79509" e_stop="79416"/>
            <exon e_start="79022" e_stop="78933"/>
            <exon e_start="78688" e_stop="78499"/>
            <exon e_start="78064" e_stop="77638"/>
            <exon e_start="77483" e_stop="77477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.967"/>
          <exon-intron don_prob="0.750" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.539" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.970" e_score="0.998"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="82449" e_stop="82390" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82389" i_stop="82340" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="82339" e_stop="82169" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.750" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82168" i_stop="81412" i_length="757"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81411" e_stop="81299" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="81298" i_stop="80685" i_length="614"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80684" e_stop="80606" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.996">
            <gDNA_intron_boundary i_start="80605" i_stop="80033" i_length="573"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80032" e_stop="80004" e_length="29"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80003" i_stop="79510" i_length="494"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79509" e_stop="79416" e_length="94"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.539">
            <gDNA_intron_boundary i_start="79415" i_stop="79023" i_length="393"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79022" e_stop="78933" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.714" acc_prob="0.858">
            <gDNA_intron_boundary i_start="78932" i_stop="78689" i_length="244"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="78688" e_stop="78499" e_length="190"/>
          </exon>
          <intron i_serial="8" don_prob="0.967" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="78064" e_stop="77638" e_length="427"/>
          </exon>
          <intron i_serial="9" don_prob="0.900" acc_prob="0.970">
            <gDNA_intron_boundary i_start="77637" i_stop="77484" i_length="154"/>
          </intron>
          <exon e_serial="10" e_score="0.714">
            <gDNA_exon_boundary e_start="77483" e_stop="77477" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82449" stop="82390"/>
              <exon start="82339" stop="82169"/>
              <exon start="81411" stop="81299"/>
              <exon start="80684" stop="80639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82234" stop="82169"/>
              <exon start="81411" stop="81299"/>
              <exon start="80684" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82200" stop="82169"/>
              <exon start="81411" stop="81299"/>
              <exon start="80684" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="78048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80672" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80672" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80672" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77638"/>
              <exon start="77483" stop="77477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79011" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77638"/>
              <exon start="77483" stop="77477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78945" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78623" stop="78499"/>
              <exon start="78064" stop="77654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413241" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCCGCCGCTCGGAGCACACTAGTCGCCGATCGCCGCCCGTCGCCCGCCGCCGCCGCC : TAGTTTTTCTTTGTTACAGCTGAAATTATGGGCTCAGAGATGGAGATAGTCGAGCAAAGGCTAAACACTTTTGTAAGTCAGCTGCAGACAGAGTTTGCCATTCTCGATCGTCTCGTTTACAAAAATAAAAACCAGCATAGAAGATGCTCATATTTTCAGTACCTCTTAAAG : GTGCGAAGAGATGTGAGGCTCCTCCAAACAACTAACTTGGAGGAGGTTTTGAGTGACTCCTTTCAAGTTCTTAACGGAAAAAGACCCAAGCAAAAAGTGCAGCTTCTGGAAAG : CCTAAAGAGGAGAAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAG : ATGGTTGAGCCAGTTTTAAGGGCCGCGTC : GGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAA : ATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAG : GTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAG : ATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGTTGATAATCCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGTGAAGAGCAGTCTATTCTGAACTTCACCTAAATAGTTTTTCAT : GAAGAAA</gDNA_template>
            <first_frame> C  S  A  A  R  S  T  L  V  A  D  R  R  P  S  P  A  A  A  A  :  *  F  F  F  V  T  A  E  I  M  G  S  E  M  E  I  V  E  Q  R  L  N  T  F  V  S  Q  L  Q  T  E  F  A  I  L  D  R  L  V  Y  K  N  K  N  Q  H  R  R  C  S  Y  F  Q  Y  L  L  K  :  V  R  R  D  V  R  L  L  Q  T  T  N  L  E  E  V  L  S  D  S  F  Q  V  L  N  G  K  R  P  K  Q  K  V  Q  L  L  E  S :   L  K  R  R  R  S  N  G  G  K  Y  N  F  L  E  R  L  L  G  V  A  H  L  L  S  Q  :  M  V  E  P  V  L  R  A  A  S :   E  I  S  T  L  L  A  R  S  F  F  M  G  F  S  L  T  V  L  S  L  L  A  R  I  R  V  L  V  Q  Q  :  I  L  L  D  V  V  C  V  F  N  N  V  S  S  L  S  Q  R  E  Q  A  I  K  L  T  Q  D  G  F  E  :  V  F  R  E  Y  F  P  P  K  Q  Q  V  V  F  L  E  C  I  W  E  S  D  K  Y  M  L  V  E  R  Q  N  Q  K  D  V  G  S  Q  E  K  D  V  G  E  D  V  S  V  E  A  S  K  V  Q  Y  E  S  I  G  L  F  L  G   : D  D  E  P  G  Q  T  A  S  K  D  S  A  E  D  G  Q  T  M  K  D  N  D  I  V  D  S  L  E  D  P  I  Q  D  S  N  D  E  S  Q  A  Q  V  D  S  T  I  A  E  P  S  G  N  N  F  D  A  P  E  A  G  A  L  P  S  S  S  R  D  K  N  P  S  K  A  K  H  G  S  R  N  S  V  A  F  V  S  V  K  R  P  K  L  S  T  N  N  E  L  G  F  D  I  H  R  T  E  K  V  D  N  P  G  V  D  K  E  D  P  F  F  S  L  L  F  S  G  N  V  K  S  S  L  F  *  T  S  P  K  *  F  F  M :   K  K </first_frame>
            <second_frame>  A  P  P  L  G  A  H  *  S  P  I  A  A  R  R  P  P  P  P  P :   S  F  S  L  L  Q  L  K  L  W  A  Q  R  W  R  *  S  S  K  G  *  T  L  L  *  V  S  C  R  Q  S  L  P  F  S  I  V  S  F  T  K  I  K  T  S  I  E  D  A  H  I  F  S  T  S  *  R :   C  E  E  M  *  G  S  S  K  Q  L  T  W  R  R  F  *  V  T  P  F  K  F  L  T  E  K  D  P  S  K  K  C  S  F  W  K   : A  *  R  G  E  D  L  M  V  A  N  I  T  F  W  S  G  F  *  G  L  R  I  C  C  H  R :   W  L  S  Q  F  *  G  P  R   : R  R  Y  P  H  F  L  H  D  H  F  L  W  D  F  R  *  Q  Y  C  P  C  L  P  E  *  E  F  *  F  S  K :   F  F  *  M  L  F  V  Y  S  T  M  F  P  L  Y  H  R  G  N  K  P  S  N  *  L  K  M  V  L  R :   F  L  E  N  I  F  R  Q  S  S  R  W  S  S  S  N  V  F  G  N  L  I  S  I  C  *  L  R  D  K  I  R  K  M  L  E  A  R  K  R  M  L  E  K  M  F  L  *  K  H  L  R  F  S  M  K  A  L  G  F  S  *  E  :  M  M  N  L  D  R  R  P  L  K  I  Q  L  R  M  V  K  L  *  R  T  T  I  *  *  I  P  W  R  I  L  S  K  I  V  M  M  N  L  K  L  K  L  I  Q  L  L  Q  N  L  L  E  I  I  L  M  L  L  K  P  E  H  F  Q  V  H  H  E  T  R  I  L  Q  K  P  N  M  D  Q  E  I  A  L  H  L  F  Q  *  K  D  P  N  C  Q  Q  T  M  S  W  G  L  T  F  I  E  Q  K  R  L  I  I  L  V  *  I  K  K  I  H  F  S  V  Y  F  L  V  E  M  *  R  A  V  Y  S  E  L  H  L  N  S  F  S   : *  R   </second_frame>
            <third_frame>   L  R  R  S  E  H  T  S  R  R  S  P  P  V  A  R  R  R  R   : L  V  F  L  C  Y  S  *  N  Y  G  L  R  D  G  D  S  R  A  K  A  K  H  F  C  K  S  A  A  D  R  V  C  H  S  R  S  S  R  L  Q  K  *  K  P  A  *  K  M  L  I  F  S  V  P  L  K   : G  A  K  R  C  E  A  P  P  N  N  *  L  G  G  G  F  E  *  L  L  S  S  S  *  R  K  K  T  Q  A  K  S  A  A  S  G  K  :  P  K  E  E  K  I  *  W  W  Q  I  *  L  S  G  A  A  F  R  G  C  A  S  V  V  T   : D  G  *  A  S  F  K  G  R  V  :  G  D  I  H  T  S  C  T  I  I  F  Y  G  I  F  A  D  S  I  V  L  A  C  P  N  K  S  S  S  S  A   : N  S  S  R  C  C  L  C  I  Q  Q  C  F  L  F  I  T  E  G  T  S  H  Q  I  D  S  R  W  F  *   : G  F  *  R  I  F  S  A  K  A  A  G  G  L  P  R  M  Y  L  G  I  *  *  V  Y  V  S  *  E  T  K  S  E  R  C  W  K  P  G  K  G  C  W  R  R  C  F  C  R  S  I  *  G  S  V  *  K  H  W  A  F  P  R  R :   *  *  T  W  T  D  G  L  *  R  F  S  *  G  W  S  N  Y  E  G  Q  R  Y  S  R  F  L  G  G  S  Y  P  R  *  *  *  *  I  S  S  S  S  *  F  N  Y  C  R  T  F  W  K  *  F  *  C  S  *  S  R  S  T  S  K  F  I  T  R  Q  E  S  F  K  S  Q  T  W  I  K  K  *  R  C  I  C  F  S  K  K  T  Q  T  V  N  K  Q  *  V  G  V  *  H  S  *  N  R  K  G  *  *  S  W  C  R  *  R  R  S  I  F  Q  F  T  F  *  W  K  C  E  E  Q  S  I  L  N  F  T  *  I  V  F  H  :  E  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82336" stop="82169"/>
                    <exon start="81411" stop="81299"/>
                    <exon start="80684" stop="80606"/>
                    <exon start="80032" stop="80004"/>
                    <exon start="79509" stop="79416"/>
                    <exon start="79022" stop="78933"/>
                    <exon start="78688" stop="78499"/>
                    <exon start="78064" stop="77661"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFVTAEIMGSEMEIVEQRLNTFVSQLQTEFAILDRLVYKNKNQHRRCSYFQYLLKVRRDVRLLQTTNLEEVLSDSFQVLNGKRPKQKVQLLESLKRRRSNGGKYNFLERLLGVAHLLSQMVEPVLRAASEISTLLARSFFMGFSLTVLSLLARIRVLVQQILLDVVCVFNNVSSLSQREQAIKLTQDGFEVFREYFPPKQQVVFLECIWESDKYMLVERQNQKDVGSQEKDVGEDVSVEASKVQYESIGLFLGDDEPGQTASKDSAEDGQTMKDNDIVDSLEDPIQDSNDESQAQVDSTIAEPSGNNFDAPEAGALPSSSRDKNPSKAKHGSRNSVAFVSVKRPKLSTNNELGFDIHRTEKVDNPGVDKEDPFFSLLFSGNVKSSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82494" e_stop="82169"/>
            <exon e_start="81411" e_stop="81299"/>
            <exon e_start="80684" e_stop="80606"/>
            <exon e_start="80032" e_stop="80004"/>
            <exon e_start="79509" e_stop="79416"/>
            <exon e_start="79022" e_stop="78933"/>
            <exon e_start="78688" e_stop="78499"/>
            <exon e_start="78064" e_stop="77638"/>
            <exon e_start="77483" e_stop="77477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.750" acc_prob="0.999" e_score="0.914"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="0.991"/>
          <exon-intron don_prob="0.972" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.539" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.970" e_score="0.998"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="82494" e_stop="82169" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.750" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82168" i_stop="81412" i_length="757"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="81411" e_stop="81299" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="81298" i_stop="80685" i_length="614"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80684" e_stop="80606" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.996">
            <gDNA_intron_boundary i_start="80605" i_stop="80033" i_length="573"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80032" e_stop="80004" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80003" i_stop="79510" i_length="494"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79509" e_stop="79416" e_length="94"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.539">
            <gDNA_intron_boundary i_start="79415" i_stop="79023" i_length="393"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79022" e_stop="78933" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.714" acc_prob="0.858">
            <gDNA_intron_boundary i_start="78932" i_stop="78689" i_length="244"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78688" e_stop="78499" e_length="190"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="78064" e_stop="77638" e_length="427"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="0.970">
            <gDNA_intron_boundary i_start="77637" i_stop="77484" i_length="154"/>
          </intron>
          <exon e_serial="9" e_score="0.714">
            <gDNA_exon_boundary e_start="77483" e_stop="77477" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82494" stop="82169"/>
              <exon start="81411" stop="81299"/>
              <exon start="80684" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82234" stop="82169"/>
              <exon start="81411" stop="81299"/>
              <exon start="80684" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82200" stop="82169"/>
              <exon start="81411" stop="81299"/>
              <exon start="80684" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="78048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80672" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80672" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80672" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77638"/>
              <exon start="77483" stop="77477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79011" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77638"/>
              <exon start="77483" stop="77477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78945" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78623" stop="78499"/>
              <exon start="78064" stop="77654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413241" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCCTTAGCCCATTTGTCAGACGAATTCAACCCGGAAACCAATTGCTCCGCCGCTCGGAGCACACTAGTCGCCGATCGCCGCCCGTCGCCCGCCGCCGCCGCCGCAAGTATTTATACTGTCTGCTTAGTTTCTGAATTTATGAAGTCTTATTGTAGTTTTTCTTTGTTACAGCTGAAATTATGGGCTCAGAGATGGAGATAGTCGAGCAAAGGCTAAACACTTTTGTAAGTCAGCTGCAGACAGAGTTTGCCATTCTCGATCGTCTCGTTTACAAAAATAAAAACCAGCATAGAAGATGCTCATATTTTCAGTACCTCTTAAAG : GTGCGAAGAGATGTGAGGCTCCTCCAAACAACTAACTTGGAGGAGGTTTTGAGTGACTCCTTTCAAGTTCTTAACGGAAAAAGACCCAAGCAAAAAGTGCAGCTTCTGGAAAG : CCTAAAGAGGAGAAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAG : ATGGTTGAGCCAGTTTTAAGGGCCGCGTC : GGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAA : ATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAG : GTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAG : ATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGTTGATAATCCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGTGAAGAGCAGTCTATTCTGAACTTCACCTAAATAGTTTTTCAT : GAAGAAA</gDNA_template>
            <first_frame> I  S  L  A  H  L  S  D  E  F  N  P  E  T  N  C  S  A  A  R  S  T  L  V  A  D  R  R  P  S  P  A  A  A  A  A  S  I  Y  T  V  C  L  V  S  E  F  M  K  S  Y  C  S  F  S  L  L  Q  L  K  L  W  A  Q  R  W  R  *  S  S  K  G  *  T  L  L  *  V  S  C  R  Q  S  L  P  F  S  I  V  S  F  T  K  I  K  T  S  I  E  D  A  H  I  F  S  T  S  *  R :   C  E  E  M  *  G  S  S  K  Q  L  T  W  R  R  F  *  V  T  P  F  K  F  L  T  E  K  D  P  S  K  K  C  S  F  W  K   : A  *  R  G  E  D  L  M  V  A  N  I  T  F  W  S  G  F  *  G  L  R  I  C  C  H  R :   W  L  S  Q  F  *  G  P  R   : R  R  Y  P  H  F  L  H  D  H  F  L  W  D  F  R  *  Q  Y  C  P  C  L  P  E  *  E  F  *  F  S  K :   F  F  *  M  L  F  V  Y  S  T  M  F  P  L  Y  H  R  G  N  K  P  S  N  *  L  K  M  V  L  R :   F  L  E  N  I  F  R  Q  S  S  R  W  S  S  S  N  V  F  G  N  L  I  S  I  C  *  L  R  D  K  I  R  K  M  L  E  A  R  K  R  M  L  E  K  M  F  L  *  K  H  L  R  F  S  M  K  A  L  G  F  S  *  E  :  M  M  N  L  D  R  R  P  L  K  I  Q  L  R  M  V  K  L  *  R  T  T  I  *  *  I  P  W  R  I  L  S  K  I  V  M  M  N  L  K  L  K  L  I  Q  L  L  Q  N  L  L  E  I  I  L  M  L  L  K  P  E  H  F  Q  V  H  H  E  T  R  I  L  Q  K  P  N  M  D  Q  E  I  A  L  H  L  F  Q  *  K  D  P  N  C  Q  Q  T  M  S  W  G  L  T  F  I  E  Q  K  R  L  I  I  L  V  *  I  K  K  I  H  F  S  V  Y  F  L  V  E  M  *  R  A  V  Y  S  E  L  H  L  N  S  F  S   : *  R   </first_frame>
            <second_frame>  F  P  *  P  I  C  Q  T  N  S  T  R  K  P  I  A  P  P  L  G  A  H  *  S  P  I  A  A  R  R  P  P  P  P  P  Q  V  F  I  L  S  A  *  F  L  N  L  *  S  L  I  V  V  F  L  C  Y  S  *  N  Y  G  L  R  D  G  D  S  R  A  K  A  K  H  F  C  K  S  A  A  D  R  V  C  H  S  R  S  S  R  L  Q  K  *  K  P  A  *  K  M  L  I  F  S  V  P  L  K   : G  A  K  R  C  E  A  P  P  N  N  *  L  G  G  G  F  E  *  L  L  S  S  S  *  R  K  K  T  Q  A  K  S  A  A  S  G  K  :  P  K  E  E  K  I  *  W  W  Q  I  *  L  S  G  A  A  F  R  G  C  A  S  V  V  T   : D  G  *  A  S  F  K  G  R  V  :  G  D  I  H  T  S  C  T  I  I  F  Y  G  I  F  A  D  S  I  V  L  A  C  P  N  K  S  S  S  S  A   : N  S  S  R  C  C  L  C  I  Q  Q  C  F  L  F  I  T  E  G  T  S  H  Q  I  D  S  R  W  F  *   : G  F  *  R  I  F  S  A  K  A  A  G  G  L  P  R  M  Y  L  G  I  *  *  V  Y  V  S  *  E  T  K  S  E  R  C  W  K  P  G  K  G  C  W  R  R  C  F  C  R  S  I  *  G  S  V  *  K  H  W  A  F  P  R  R :   *  *  T  W  T  D  G  L  *  R  F  S  *  G  W  S  N  Y  E  G  Q  R  Y  S  R  F  L  G  G  S  Y  P  R  *  *  *  *  I  S  S  S  S  *  F  N  Y  C  R  T  F  W  K  *  F  *  C  S  *  S  R  S  T  S  K  F  I  T  R  Q  E  S  F  K  S  Q  T  W  I  K  K  *  R  C  I  C  F  S  K  K  T  Q  T  V  N  K  Q  *  V  G  V  *  H  S  *  N  R  K  G  *  *  S  W  C  R  *  R  R  S  I  F  Q  F  T  F  *  W  K  C  E  E  Q  S  I  L  N  F  T  *  I  V  F  H  :  E  E  </second_frame>
            <third_frame>   F  L  S  P  F  V  R  R  I  Q  P  G  N  Q  L  L  R  R  S  E  H  T  S  R  R  S  P  P  V  A  R  R  R  R  R  K  Y  L  Y  C  L  L  S  F  *  I  Y  E  V  L  L  *  F  F  F  V  T  A  E  I  M  G  S  E  M  E  I  V  E  Q  R  L  N  T  F  V  S  Q  L  Q  T  E  F  A  I  L  D  R  L  V  Y  K  N  K  N  Q  H  R  R  C  S  Y  F  Q  Y  L  L  K  :  V  R  R  D  V  R  L  L  Q  T  T  N  L  E  E  V  L  S  D  S  F  Q  V  L  N  G  K  R  P  K  Q  K  V  Q  L  L  E  S :   L  K  R  R  R  S  N  G  G  K  Y  N  F  L  E  R  L  L  G  V  A  H  L  L  S  Q  :  M  V  E  P  V  L  R  A  A  S :   E  I  S  T  L  L  A  R  S  F  F  M  G  F  S  L  T  V  L  S  L  L  A  R  I  R  V  L  V  Q  Q  :  I  L  L  D  V  V  C  V  F  N  N  V  S  S  L  S  Q  R  E  Q  A  I  K  L  T  Q  D  G  F  E  :  V  F  R  E  Y  F  P  P  K  Q  Q  V  V  F  L  E  C  I  W  E  S  D  K  Y  M  L  V  E  R  Q  N  Q  K  D  V  G  S  Q  E  K  D  V  G  E  D  V  S  V  E  A  S  K  V  Q  Y  E  S  I  G  L  F  L  G   : D  D  E  P  G  Q  T  A  S  K  D  S  A  E  D  G  Q  T  M  K  D  N  D  I  V  D  S  L  E  D  P  I  Q  D  S  N  D  E  S  Q  A  Q  V  D  S  T  I  A  E  P  S  G  N  N  F  D  A  P  E  A  G  A  L  P  S  S  S  R  D  K  N  P  S  K  A  K  H  G  S  R  N  S  V  A  F  V  S  V  K  R  P  K  L  S  T  N  N  E  L  G  F  D  I  H  R  T  E  K  V  D  N  P  G  V  D  K  E  D  P  F  F  S  L  L  F  S  G  N  V  K  S  S  L  F  *  T  S  P  K  *  F  F  M :   K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82336" stop="82169"/>
                    <exon start="81411" stop="81299"/>
                    <exon start="80684" stop="80606"/>
                    <exon start="80032" stop="80004"/>
                    <exon start="79509" stop="79416"/>
                    <exon start="79022" stop="78933"/>
                    <exon start="78688" stop="78499"/>
                    <exon start="78064" stop="77661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFVTAEIMGSEMEIVEQRLNTFVSQLQTEFAILDRLVYKNKNQHRRCSYFQYLLKVRRDVRLLQTTNLEEVLSDSFQVLNGKRPKQKVQLLESLKRRRSNGGKYNFLERLLGVAHLLSQMVEPVLRAASEISTLLARSFFMGFSLTVLSLLARIRVLVQQILLDVVCVFNNVSSLSQREQAIKLTQDGFEVFREYFPPKQQVVFLECIWESDKYMLVERQNQKDVGSQEKDVGEDVSVEASKVQYESIGLFLGDDEPGQTASKDSAEDGQTMKDNDIVDSLEDPIQDSNDESQAQVDSTIAEPSGNNFDAPEAGALPSSSRDKNPSKAKHGSRNSVAFVSVKRPKLSTNNELGFDIHRTEKVDNPGVDKEDPFFSLLFSGNVKSSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="82449" e_stop="82390"/>
            <exon e_start="82339" e_stop="82169"/>
            <exon e_start="81411" e_stop="81299"/>
            <exon e_start="80684" e_stop="80606"/>
            <exon e_start="80032" e_stop="80004"/>
            <exon e_start="79509" e_stop="79416"/>
            <exon e_start="79022" e_stop="78933"/>
            <exon e_start="78688" e_stop="78499"/>
            <exon e_start="78064" e_stop="77547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.967"/>
          <exon-intron don_prob="0.750" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.539" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="82449" e_stop="82390" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82389" i_stop="82340" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="82339" e_stop="82169" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.750" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82168" i_stop="81412" i_length="757"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81411" e_stop="81299" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="81298" i_stop="80685" i_length="614"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80684" e_stop="80606" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.996">
            <gDNA_intron_boundary i_start="80605" i_stop="80033" i_length="573"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80032" e_stop="80004" e_length="29"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80003" i_stop="79510" i_length="494"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79509" e_stop="79416" e_length="94"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.539">
            <gDNA_intron_boundary i_start="79415" i_stop="79023" i_length="393"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79022" e_stop="78933" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.714" acc_prob="0.858">
            <gDNA_intron_boundary i_start="78932" i_stop="78689" i_length="244"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="78688" e_stop="78499" e_length="190"/>
          </exon>
          <intron i_serial="8" don_prob="0.967" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78498" i_stop="78065" i_length="434"/>
          </intron>
          <exon e_serial="9" e_score="0.940">
            <gDNA_exon_boundary e_start="78064" e_stop="77547" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82449" stop="82390"/>
              <exon start="82339" stop="82169"/>
              <exon start="81411" stop="81299"/>
              <exon start="80684" stop="80639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82234" stop="82169"/>
              <exon start="81411" stop="81299"/>
              <exon start="80684" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82200" stop="82169"/>
              <exon start="81411" stop="81299"/>
              <exon start="80684" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="78048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80672" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80672" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80672" stop="80606"/>
              <exon start="80032" stop="80004"/>
              <exon start="79509" stop="79416"/>
              <exon start="79022" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78945" stop="78933"/>
              <exon start="78688" stop="78499"/>
              <exon start="78064" stop="77647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78623" stop="78499"/>
              <exon start="78064" stop="77547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426446" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78623" stop="78499"/>
              <exon start="78064" stop="77654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413241" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCCGCCGCTCGGAGCACACTAGTCGCCGATCGCCGCCCGTCGCCCGCCGCCGCCGCC : TAGTTTTTCTTTGTTACAGCTGAAATTATGGGCTCAGAGATGGAGATAGTCGAGCAAAGGCTAAACACTTTTGTAAGTCAGCTGCAGACAGAGTTTGCCATTCTCGATCGTCTCGTTTACAAAAATAAAAACCAGCATAGAAGATGCTCATATTTTCAGTACCTCTTAAAG : GTGCGAAGAGATGTGAGGCTCCTCCAAACAACTAACTTGGAGGAGGTTTTGAGTGACTCCTTTCAAGTTCTTAACGGAAAAAGACCCAAGCAAAAAGTGCAGCTTCTGGAAAG : CCTAAAGAGGAGAAGATCTAATGGTGGCAAATATAACTTTCTGGAGCGGCTTTTAGGGGTTGCGCATCTGTTGTCACAG : ATGGTTGAGCCAGTTTTAAGGGCCGCGTC : GGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGATTTTCGCTGACAGTATTGTCCTTGCTTGCCCGAATAAGAGTTCTAGTTCAGCAA : ATTCTTCTAGATGTTGTTTGTGTATTCAACAATGTTTCCTCTTTATCACAGAGGGAACAAGCCATCAAATTGACTCAAGATGGTTTTGAG : GTTTTTAGAGAATATTTTCCGCCAAAGCAGCAGGTGGTCTTCCTCGAATGTATTTGGGAATCTGATAAGTATATGTTAGTTGAGAGACAAAATCAGAAAGATGTTGGAAGCCAGGAAAAGGATGTTGGAGAAGATGTTTCTGTAGAAGCATCTAAGGTTCAGTATGAAAGCATTGGGCTTTTCCTAGGAG : ATGATGAACCTGGACAGACGGCCTCTAAAGATTCAGCTGAGGATGGTCAAACTATGAAGGACAACGATATAGTAGATTCCTTGGAGGATCCTATCCAAGATAGTAATGATGAATCTCAAGCTCAAGTTGATTCAACTATTGCAGAACCTTCTGGAAATAATTTTGATGCTCCTGAAGCCGGAGCACTTCCAAGTTCATCACGAGACAAGAATCCTTCAAAAGCCAAACATGGATCAAGAAATAGCGTTGCATTTGTTTCAGTAAAAAGACCCAAACTGTCAACAAACAATGAGTTGGGGTTTGACATTCATAGAACAGAAAAGGTTGATAATCCTGGTGTAGATAAAGAAGATCCATTTTTCAGTTTACTTTTTAGTGGAAATGTGAAGAGCAGTCTATTCTGAACTTCACCTAAATAGTTTTTCATATCTCCTTGTTTTTCTCTGTTAACTAGGCTGCGGCGCATCTTTGCGTCCATATATGTGAGTTGATGCTCAATCATGTTCAAATTTGGACAA</gDNA_template>
            <first_frame> C  S  A  A  R  S  T  L  V  A  D  R  R  P  S  P  A  A  A  A  :  *  F  F  F  V  T  A  E  I  M  G  S  E  M  E  I  V  E  Q  R  L  N  T  F  V  S  Q  L  Q  T  E  F  A  I  L  D  R  L  V  Y  K  N  K  N  Q  H  R  R  C  S  Y  F  Q  Y  L  L  K  :  V  R  R  D  V  R  L  L  Q  T  T  N  L  E  E  V  L  S  D  S  F  Q  V  L  N  G  K  R  P  K  Q  K  V  Q  L  L  E  S :   L  K  R  R  R  S  N  G  G  K  Y  N  F  L  E  R  L  L  G  V  A  H  L  L  S  Q  :  M  V  E  P  V  L  R  A  A  S :   E  I  S  T  L  L  A  R  S  F  F  M  G  F  S  L  T  V  L  S  L  L  A  R  I  R  V  L  V  Q  Q  :  I  L  L  D  V  V  C  V  F  N  N  V  S  S  L  S  Q  R  E  Q  A  I  K  L  T  Q  D  G  F  E  :  V  F  R  E  Y  F  P  P  K  Q  Q  V  V  F  L  E  C  I  W  E  S  D  K  Y  M  L  V  E  R  Q  N  Q  K  D  V  G  S  Q  E  K  D  V  G  E  D  V  S  V  E  A  S  K  V  Q  Y  E  S  I  G  L  F  L  G   : D  D  E  P  G  Q  T  A  S  K  D  S  A  E  D  G  Q  T  M  K  D  N  D  I  V  D  S  L  E  D  P  I  Q  D  S  N  D  E  S  Q  A  Q  V  D  S  T  I  A  E  P  S  G  N  N  F  D  A  P  E  A  G  A  L  P  S  S  S  R  D  K  N  P  S  K  A  K  H  G  S  R  N  S  V  A  F  V  S  V  K  R  P  K  L  S  T  N  N  E  L  G  F  D  I  H  R  T  E  K  V  D  N  P  G  V  D  K  E  D  P  F  F  S  L  L  F  S  G  N  V  K  S  S  L  F  *  T  S  P  K  *  F  F  I  S  P  C  F  S  L  L  T  R  L  R  R  I  F  A  S  I  Y  V  S  *  C  S  I  M  F  K  F  G  Q </first_frame>
            <second_frame>  A  P  P  L  G  A  H  *  S  P  I  A  A  R  R  P  P  P  P  P :   S  F  S  L  L  Q  L  K  L  W  A  Q  R  W  R  *  S  S  K  G  *  T  L  L  *  V  S  C  R  Q  S  L  P  F  S  I  V  S  F  T  K  I  K  T  S  I  E  D  A  H  I  F  S  T  S  *  R :   C  E  E  M  *  G  S  S  K  Q  L  T  W  R  R  F  *  V  T  P  F  K  F  L  T  E  K  D  P  S  K  K  C  S  F  W  K   : A  *  R  G  E  D  L  M  V  A  N  I  T  F  W  S  G  F  *  G  L  R  I  C  C  H  R :   W  L  S  Q  F  *  G  P  R   : R  R  Y  P  H  F  L  H  D  H  F  L  W  D  F  R  *  Q  Y  C  P  C  L  P  E  *  E  F  *  F  S  K :   F  F  *  M  L  F  V  Y  S  T  M  F  P  L  Y  H  R  G  N  K  P  S  N  *  L  K  M  V  L  R :   F  L  E  N  I  F  R  Q  S  S  R  W  S  S  S  N  V  F  G  N  L  I  S  I  C  *  L  R  D  K  I  R  K  M  L  E  A  R  K  R  M  L  E  K  M  F  L  *  K  H  L  R  F  S  M  K  A  L  G  F  S  *  E  :  M  M  N  L  D  R  R  P  L  K  I  Q  L  R  M  V  K  L  *  R  T  T  I  *  *  I  P  W  R  I  L  S  K  I  V  M  M  N  L  K  L  K  L  I  Q  L  L  Q  N  L  L  E  I  I  L  M  L  L  K  P  E  H  F  Q  V  H  H  E  T  R  I  L  Q  K  P  N  M  D  Q  E  I  A  L  H  L  F  Q  *  K  D  P  N  C  Q  Q  T  M  S  W  G  L  T  F  I  E  Q  K  R  L  I  I  L  V  *  I  K  K  I  H  F  S  V  Y  F  L  V  E  M  *  R  A  V  Y  S  E  L  H  L  N  S  F  S  Y  L  L  V  F  L  C  *  L  G  C  G  A  S  L  R  P  Y  M  *  V  D  A  Q  S  C  S  N  L  D   </second_frame>
            <third_frame>   L  R  R  S  E  H  T  S  R  R  S  P  P  V  A  R  R  R  R   : L  V  F  L  C  Y  S  *  N  Y  G  L  R  D  G  D  S  R  A  K  A  K  H  F  C  K  S  A  A  D  R  V  C  H  S  R  S  S  R  L  Q  K  *  K  P  A  *  K  M  L  I  F  S  V  P  L  K   : G  A  K  R  C  E  A  P  P  N  N  *  L  G  G  G  F  E  *  L  L  S  S  S  *  R  K  K  T  Q  A  K  S  A  A  S  G  K  :  P  K  E  E  K  I  *  W  W  Q  I  *  L  S  G  A  A  F  R  G  C  A  S  V  V  T   : D  G  *  A  S  F  K  G  R  V  :  G  D  I  H  T  S  C  T  I  I  F  Y  G  I  F  A  D  S  I  V  L  A  C  P  N  K  S  S  S  S  A   : N  S  S  R  C  C  L  C  I  Q  Q  C  F  L  F  I  T  E  G  T  S  H  Q  I  D  S  R  W  F  *   : G  F  *  R  I  F  S  A  K  A  A  G  G  L  P  R  M  Y  L  G  I  *  *  V  Y  V  S  *  E  T  K  S  E  R  C  W  K  P  G  K  G  C  W  R  R  C  F  C  R  S  I  *  G  S  V  *  K  H  W  A  F  P  R  R :   *  *  T  W  T  D  G  L  *  R  F  S  *  G  W  S  N  Y  E  G  Q  R  Y  S  R  F  L  G  G  S  Y  P  R  *  *  *  *  I  S  S  S  S  *  F  N  Y  C  R  T  F  W  K  *  F  *  C  S  *  S  R  S  T  S  K  F  I  T  R  Q  E  S  F  K  S  Q  T  W  I  K  K  *  R  C  I  C  F  S  K  K  T  Q  T  V  N  K  Q  *  V  G  V  *  H  S  *  N  R  K  G  *  *  S  W  C  R  *  R  R  S  I  F  Q  F  T  F  *  W  K  C  E  E  Q  S  I  L  N  F  T  *  I  V  F  H  I  S  L  F  F  S  V  N  *  A  A  A  H  L  C  V  H  I  C  E  L  M  L  N  H  V  Q  I  W  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82336" stop="82169"/>
                    <exon start="81411" stop="81299"/>
                    <exon start="80684" stop="80606"/>
                    <exon start="80032" stop="80004"/>
                    <exon start="79509" stop="79416"/>
                    <exon start="79022" stop="78933"/>
                    <exon start="78688" stop="78499"/>
                    <exon start="78064" stop="77661"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFVTAEIMGSEMEIVEQRLNTFVSQLQTEFAILDRLVYKNKNQHRRCSYFQYLLKVRRDVRLLQTTNLEEVLSDSFQVLNGKRPKQKVQLLESLKRRRSNGGKYNFLERLLGVAHLLSQMVEPVLRAASEISTLLARSFFMGFSLTVLSLLARIRVLVQQILLDVVCVFNNVSSLSQREQAIKLTQDGFEVFREYFPPKQQVVFLECIWESDKYMLVERQNQKDVGSQEKDVGEDVSVEASKVQYESIGLFLGDDEPGQTASKDSAEDGQTMKDNDIVDSLEDPIQDSNDESQAQVDSTIAEPSGNNFDAPEAGALPSSSRDKNPSKAKHGSRNSVAFVSVKRPKLSTNNELGFDIHRTEKVDNPGVDKEDPFFSLLFSGNVKSSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="80026" e_stop="79470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="80026" e_stop="79470" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80026" stop="79470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCCAGTTTTAAGGGCCGCGTCGTATCCTTCTTACTTCTTTTTTGCGCACTAATCCTTCATTTTTTATGTTGTTTATGGGACAAGATTTACTTAAATAATAGGAAGAGATTAAGTTGTTCATTTTCTTTCATAGCTCTTTGGGTGTGTTAGGTGATTGGAATAAATGAGGTTATGTTTTGAAATACAGTGAGTGCTTATTTAGCTACATATAACAAAACCTTTTCTGTTCTACAAATTACTAGAGTTCTGCACAGCTGATTTGCCGTAAACATATCGGTTTGATAAATTGGTGTTGTTGGATATTAATAGTACTTCCTTTCTTCCTTGTTTTTTTCCATATATTCATAATTGCACATGTCCTATCTTCGTCTCATTTGGTAAGATGACTTTGTTTTTCATCTGTGCTGATTGCTTTTCATTTCAAAGTAAACACTTGATCAATGTTCCTGTTTTATGTAAATTCCAATGTGGATTTTTAGCCATTAATGATTGTTTCTACCCTTAACAGTAGACAGGGAGATATCCACACTTCTTGCACGATCATTTTTTATGGGA</gDNA_template>
            <first_frame> E  P  V  L  R  A  A  S  Y  P  S  Y  F  F  F  A  H  *  S  F  I  F  Y  V  V  Y  G  T  R  F  T  *  I  I  G  R  D  *  V  V  H  F  L  S  *  L  F  G  C  V  R  *  L  E  *  M  R  L  C  F  E  I  Q  *  V  L  I  *  L  H  I  T  K  P  F  L  F  Y  K  L  L  E  F  C  T  A  D  L  P  *  T  Y  R  F  D  K  L  V  L  L  D  I  N  S  T  S  F  L  P  C  F  F  P  Y  I  H  N  C  T  C  P  I  F  V  S  F  G  K  M  T  L  F  F  I  C  A  D  C  F  S  F  Q  S  K  H  L  I  N  V  P  V  L  C  K  F  Q  C  G  F  L  A  I  N  D  C  F  Y  P  *  Q  *  T  G  R  Y  P  H  F  L  H  D  H  F  L  W   </first_frame>
            <second_frame>  S  Q  F  *  G  P  R  R  I  L  L  T  S  F  L  R  T  N  P  S  F  F  M  L  F  M  G  Q  D  L  L  K  *  *  E  E  I  K  L  F  I  F  F  H  S  S  L  G  V  L  G  D  W  N  K  *  G  Y  V  L  K  Y  S  E  C  L  F  S  Y  I  *  Q  N  L  F  C  S  T  N  Y  *  S  S  A  Q  L  I  C  R  K  H  I  G  L  I  N  W  C  C  W  I  L  I  V  L  P  F  F  L  V  F  F  H  I  F  I  I  A  H  V  L  S  S  S  H  L  V  R  *  L  C  F  S  S  V  L  I  A  F  H  F  K  V  N  T  *  S  M  F  L  F  Y  V  N  S  N  V  D  F  *  P  L  M  I  V  S  T  L  N  S  R  Q  G  D  I  H  T  S  C  T  I  I  F  Y  G  </second_frame>
            <third_frame>   A  S  F  K  G  R  V  V  S  F  L  L  L  F  C  A  L  I  L  H  F  L  C  C  L  W  D  K  I  Y  L  N  N  R  K  R  L  S  C  S  F  S  F  I  A  L  W  V  C  *  V  I  G  I  N  E  V  M  F  *  N  T  V  S  A  Y  L  A  T  Y  N  K  T  F  S  V  L  Q  I  T  R  V  L  H  S  *  F  A  V  N  I  S  V  *  *  I  G  V  V  G  Y  *  *  Y  F  L  S  S  L  F  F  S  I  Y  S  *  L  H  M  S  Y  L  R  L  I  W  *  D  D  F  V  F  H  L  C  *  L  L  F  I  S  K  *  T  L  D  Q  C  S  C  F  M  *  I  P  M  W  I  F  S  H  *  *  L  F  L  P  L  T  V  D  R  E  I  S  T  L  L  A  R  S  F  F  M  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79756" stop="79520"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYRFDKLVLLDINSTSFLPCFFPYIHNCTCPIFVSFGKMTLFFICADCFSFQSKHLINVPVLCKFQCGFLAINDCFYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="93163" PGL_stop="83636"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93163" e_stop="92179"/>
            <exon e_start="91980" e_stop="91789"/>
            <exon e_start="91700" e_stop="90874"/>
            <exon e_start="83649" e_stop="83636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.924" e_score="1.000"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93163" e_stop="92179" e_length="985"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91980" e_stop="91789" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91700" e_stop="90874" e_length="827"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.924">
            <gDNA_intron_boundary i_start="90873" i_stop="83650" i_length="7224"/>
          </intron>
          <exon e_serial="4" e_score="0.786">
            <gDNA_exon_boundary e_start="83649" e_stop="83636" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93163" stop="92323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93163" stop="92366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93148" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93148" stop="92828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93147" stop="92489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93147" stop="92570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93145" stop="92750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93144" stop="92366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="92326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="92589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93142" stop="92305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93141" stop="92234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93141" stop="92307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704514" strand="+"/>
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              <exon start="91700" stop="91492"/>
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            <referenceDNA id="SGN-E272150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92299" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92298" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92285" stop="92179"/>
              <exon start="91980" stop="91816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92279" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92270" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92236" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92232" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92216" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92212" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92188" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="90988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92187" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92184" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91974" stop="91789"/>
              <exon start="91700" stop="91386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91965" stop="91789"/>
              <exon start="91700" stop="91089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91961" stop="91789"/>
              <exon start="91700" stop="91277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91960" stop="91789"/>
              <exon start="91700" stop="91272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91950" stop="91789"/>
              <exon start="91700" stop="91354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91936" stop="91789"/>
              <exon start="91700" stop="91279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91936" stop="91789"/>
              <exon start="91700" stop="91360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91926" stop="91789"/>
              <exon start="91700" stop="91102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91921" stop="91789"/>
              <exon start="91700" stop="91382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245487" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91919" stop="91789"/>
              <exon start="91700" stop="91288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91916" stop="91789"/>
              <exon start="91700" stop="91279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91906" stop="91789"/>
              <exon start="91700" stop="91178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91906" stop="91789"/>
              <exon start="91700" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91814" stop="91789"/>
              <exon start="91700" stop="91177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91684" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91668" stop="90874"/>
              <exon start="83649" stop="83636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91659" stop="91010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91644" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91625" stop="91119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91583" stop="91275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91583" stop="91385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91518" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91513" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91483" stop="90954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91472" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250162" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91460" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259722" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91396" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248737" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91395" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91393" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257067" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91392" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251882" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91384" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91335" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245033" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91268" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91256" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249599" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATCAAAACACTCAACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG : CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG : GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGTGTTACCTTTTGGCTGTTTC : GAAATAACAAAAAA</gDNA_template>
            <first_frame> C  I  K  T  L  N  T  H  S  L  Q  T  S  K  M  A  N  P  Q  Q  P  L  L  I  K  T  H  K  Q  N  P  I  I  S  F  K  I  L  S  F  V  I  T  L  F  V  A  L  F  L  V  A  P  Y  Q  V  E  I  K  H  S  N  L  C  K  T  A  Q  D  S  Q  L  C  L  S  Y  V  S  D  L  I  S  N  E  I  V  T  T  E  S  D  G  H  S  I  L  M  K  F  L  V  N  Y  V  H  Q  M  N  N  A  I  P  V  V  R  K  M  K  N  Q  I  N  D  I  R  Q  H  G  A  L  T  D  C  L  E  L  L  D  Q  S  V  D  F  A  S  D  S  I  A  A  I  D  K  R  S  R  S  E  H  A  N  A  Q  S  W  L  S  G  V  L  T  N  H  V  T  C  L  D  E  L  D  S  F  T  K  A  M  I  N  G  T  N  L  E  E  L  I  S  R  A  K  V  A  L  A  M  L  A  S  L  T  T  Q  D  E  D  V  F  M  T  V  L  G  K  M  P  S  W  V  S  S  M  D  R  K  L  M  E  S  S  G  K  D  I  I  A  N  A  V  V  A  Q  D  G  T  G  D  Y  Q  T  L  A  E  A  V  A  A  A  P  D  K  S  K  T  R  Y  V  I  Y  V  K  R  G  T  Y  K  E  N  V  E  V  A  S  N  K  M  N  L  M  I  V  G  D  G  M  Y  A  T  T  I  T  G  S  L  N  V  V  D  G  S  T  T  F  R  S  A  T  L   : A  A  V  G  Q  G  F  I  L  Q  D  I  C  I  Q  N  T  A  G  P  A  K  D  Q  A  V  A  L  R  V  G  A  D  M  S  V  I  N  R  C  R  I  D  A  Y  Q  D  T  L  Y  A  H  S  Q  R  Q  F  Y  R  D  S  Y  V  T   : G  T  V  D  F  I  F  G  N  A  A  V  V  F  Q  K  C  Q  L  V  A  R  K  P  G  K  Y  Q  Q  N  M  V  T  A  Q  G  R  T  D  P  N  Q  A  T  G  T  S  I  Q  F  C  N  I  I  A  S  S  D  L  E  P  V  L  K  E  F  P  T  Y  L  G  R  P  W  K  E  Y  S  R  T  V  V  M  E  S  Y  L  G  G  L  I  N  P  A  G  W  A  E  W  D  G  D  F  A  L  K  T  L  Y  Y  G  E  F  M  N  N  G  P  G  A  G  T  S  K  R  V  K  W  P  G  Y  H  V  I  T  D  P  A  K  A  M  P  F  T  V  A  K  L  I  Q  G  G  S  W  L  R  S  T  G  V  A  Y  V  D  G  L  Y  D  *  S  I  Y  M  M  C  H  M  S  R  A  E  Q  A  *  H  T  T  L  V  *  Q  A  F  T  W  L  I  R  Y  Y  *  V  V  N  K  F  C  L  G  V  H  K  F  I  Y  V  Y  T  F  T  L  V  M  K  L  K  L  M  M  L  *  C  N  Y  S  F  L  K  K  D  M  S  N  I  S  F  S  Q  M  C  M  V  V  E  L  F  M  L  K  L  A  R  G  I  E  *  K  S  I  V  L  P  F  G  C  F  :  E  I  T  K   </first_frame>
            <second_frame>  V  S  K  H  S  T  H  I  V  C  K  L  L  K  W  L  I  L  N  N  L  C  *  *  K  H  T  N  K  I  Q  *  S  A  S  R  S  S  V  L  L  *  L  C  L  L  L  S  S  *  L  L  H  I  K  L  R  L  N  I  L  I  Y  V  K  L  H  K  I  P  N  S  V  S  V  M  S  L  I  *  Y  P  M  K  L  S  Q  Q  N  Q  M  D  I  V  F  *  *  N  F  *  L  T  M  S  I  K  *  T  M  Q  F  Q  W  F  A  K  *  R  I  R  S  M  T  F  V  N  T  G  L  *  L  I  V  L  S  F  L  I  S  Q  L  I  S  H  L  I  Q  L  Q  Q  L  I  K  E  V  A  R  S  M  P  M  R  K  V  G  *  V  V  C  L  L  T  T  L  R  A  W  M  S  L  I  P  L  L  K  L  *  *  M  E  R  I  L  K  S  *  S  R  E  L  R  *  H  *  R  C  L  R  L  *  Q  L  R  M  R  M  F  S  *  R  F  *  E  K  C  H  L  G  *  V  R  W  I  G  S  *  W  R  V  R  V  R  T  L  *  R  M  Q  W  W  H  K  M  E  R  G  I  I  K  H  L  L  K  Q  L  L  Q  H  Q  I  R  V  R  R  V  M  *  F  M  *  R  G  E  L  I  K  R  M  L  R  W  L  A  I  K  *  T  *  *  L  L  V  M  E  C  M  L  R  P  L  L  V  A  L  M  L  S  M  D  Q  Q  P  S  A  L  P  L  L  :  L  Q  S  A  K  D  L  Y  Y  R  T  Y  V  Y  R  T  Q  Q  G  Q  R  K  T  K  Q  W  H  F  E  L  E  L  I  C  L  S  *  I  V  V  V  S  M  L  I  K  T  P  F  M  H  I  L  K  G  N  S  I  E  T  P  T  *  Q  :  V  L  L  I  S  Y  L  V  M  Q  Q  L  Y  S  R  N  A  S  S  *  L  E  N  R  V  N  T  S  K  T  W  *  L  H  K  A  G  R  T  Q  I  R  P  R  G  H  Q  F  S  S  V  T  *  *  Q  V  R  T  *  N  Q  S  *  K  N  S  Q  H  I  L  V  G  H  G  K  N  I  Q  E  L  *  *  W  N  H  T  *  V  V  S  L  I  Q  R  V  G  L  S  G  T  E  I  L  R  *  R  H  C  I  M  V  N  L  *  T  M  D  L  V  L  V  L  V  S  V  S  S  G  L  V  I  M  S  L  L  I  P  L  K  L  C  R  S  L  W  L  S  *  F  R  A  D  H  G  *  G  L  L  A  W  R  M  W  M  D  Y  M  I  R  V  Y  I  *  C  A  T  *  A  G  Q  S  K  H  N  T  Q  L  *  C  D  K  H  L  H  G  S  F  V  T  T  K  L  S  I  S  S  V  *  G  F  I  S  L  Y  T  Y  I  H  L  H  W  *  *  S  *  N  *  *  C  F  N  V  I  I  V  F  *  K  R  I  *  V  I  L  V  F  P  R  C  V  W  L  W  N  C  L  C  L  N  W  Q  G  V  L  N  K  N  L  L  C  Y  L  L  A  V  S :   K  *  Q  K  </second_frame>
            <third_frame>   Y  Q  N  T  Q  H  T  *  F  A  N  F  *  N  G  *  S  S  T  T  F  V  N  K  N  T  Q  T  K  S  N  N  Q  L  Q  D  P  Q  F  C  Y  N  F  V  C  C  S  L  L  S  C  S  I  S  S  *  D  *  T  F  *  S  M  *  N  C  T  R  F  P  T  L  S  Q  L  C  L  *  F  D  I  Q  *  N  C  H  N  R  I  R  W  T  *  Y  S  D  E  I  F  S  *  L  C  P  S  N  E  Q  C  N  S  S  G  S  Q  N  E  E  S  D  Q  *  H  S  S  T  R  G  F  N  *  L  S  *  A  S  *  S  V  S  *  F  R  I  *  F  N  C  S  N  *  *  K  K  S  L  G  A  C  Q  C  A  K  L  A  K  W  C  A  Y  *  P  R  Y  V  L  G  *  A  *  F  L  Y  *  S  Y  D  K  W  N  E  S  *  R  V  D  L  E  S  *  G  S  I  S  D  A  C  V  F  D  N  S  G  *  G  C  F  H  D  G  F  R  K  N  A  I  L  G  E  F  D  G  *  E  A  D  G  E  F  G  *  G  H  Y  S  E  C  S  G  G  T  R  W  N  G  G  L  S  N  T  C  *  S  S  C  C  S  T  R  *  E  *  D  A  L  C  N  L  C  K  E  G  N  L  *  R  E  C  *  G  G  *  Q  *  N  E  L  D  D  C  W  *  W  N  V  C  Y  D  H  Y  W  *  P  *  C  C  R  W  I  N  N  L  P  L  C  H  S  C :   C  S  R  P  R  I  Y  T  T  G  H  M  Y  T  E  H  S  R  A  S  E  R  P  S  S  G  T  S  S  W  S  *  Y  V  C  H  K  S  L  S  Y  R  C  L  S  R  H  P  L  C  T  F  S  K  A  I  L  S  R  L  L  R  D  R :   Y  C  *  F  H  I  W  *  C  S  S  C  I  P  E  M  P  A  R  S  *  K  T  G  *  I  P  A  K  H  G  D  C  T  R  Q  D  G  P  K  S  G  H  G  D  I  N  S  V  L  *  H  N  S  K  F  G  P  R  T  S  P  E  R  I  P  N  I  S  W  *  A  M  E  R  I  F  K  N  C  S  D  G  I  I  L  R  W  S  H  *  S  S  G  L  G  *  V  G  R  R  F  C  V  E  D  I  V  L  W  *  I  Y  E  Q  W  T  W  C  W  Y  *  *  A  C  Q  V  A  W  L  S  C  H  Y  *  S  R  *  S  Y  A  V  H  C  G  *  A  D  S  G  R  I  M  V  E  V  Y  W  R  G  V  C  G  W  I  I  *  L  E  Y  I  Y  D  V  P  H  E  Q  G  R  A  S  I  T  H  N  S  S  V  T  S  I  Y  M  A  H  S  L  L  L  S  C  Q  *  V  L  F  R  G  S  *  V  Y  I  R  I  Y  I  Y  I  G  D  E  A  E  T  D  D  A  L  M  *  L  *  F  S  E  K  G  Y  E  *  Y  *  F  F  P  D  V  Y  G  C  G  T  V  Y  A  *  I  G  K  G  Y  *  I  K  I  Y  C  V  T  F  W  L  F   : R  N  N  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93163" stop="92179"/>
                    <exon start="91980" stop="91789"/>
                    <exon start="91700" stop="91195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1680</number_coding_nucleotides>
                  <number_encoded_amino_acids>560</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIKTLNTHSLQTSKMANPQQPLLIKTHKQNPIISFKILSFVITLFVALFLVAPYQVEIKHSNLCKTAQDSQLCLSYVSDLISNEIVTTESDGHSILMKFLVNYVHQMNNAIPVVRKMKNQINDIRQHGALTDCLELLDQSVDFASDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELDSFTKAMINGTNLEELISRAKVALAMLASLTTQDEDVFMTVLGKMPSWVSSMDRKLMESSGKDIIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93163" e_stop="92179"/>
            <exon e_start="91980" e_stop="91789"/>
            <exon e_start="91700" e_stop="90871"/>
            <exon e_start="83649" e_stop="83636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.924" e_score="1.000"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93163" e_stop="92179" e_length="985"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91980" e_stop="91789" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91700" e_stop="90871" e_length="830"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.924">
            <gDNA_intron_boundary i_start="90870" i_stop="83650" i_length="7221"/>
          </intron>
          <exon e_serial="4" e_score="0.786">
            <gDNA_exon_boundary e_start="83649" e_stop="83636" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93163" stop="92323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93163" stop="92366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93148" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93148" stop="92828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93147" stop="92489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93147" stop="92570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93145" stop="92750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93144" stop="92366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="92326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="92589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93142" stop="92305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93141" stop="92234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93141" stop="92307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93141" stop="92365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93140" stop="92688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93138" stop="92506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93137" stop="92445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93137" stop="92614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93137" stop="92952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93136" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="90890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93136" stop="92629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93136" stop="92862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93135" stop="92405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93134" stop="92539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93134" stop="92680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93132" stop="92572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93132" stop="92770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93119" stop="92287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93116" stop="92572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93116" stop="92674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93093" stop="92511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93090" stop="92422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271780" strand="+"/>
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              <exon start="91700" stop="91089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91961" stop="91789"/>
              <exon start="91700" stop="91277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91960" stop="91789"/>
              <exon start="91700" stop="91272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91950" stop="91789"/>
              <exon start="91700" stop="91354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91936" stop="91789"/>
              <exon start="91700" stop="91279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91936" stop="91789"/>
              <exon start="91700" stop="91360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91926" stop="91789"/>
              <exon start="91700" stop="91102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91921" stop="91789"/>
              <exon start="91700" stop="91382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245487" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91919" stop="91789"/>
              <exon start="91700" stop="91288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91916" stop="91789"/>
              <exon start="91700" stop="91279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91906" stop="91789"/>
              <exon start="91700" stop="91178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91906" stop="91789"/>
              <exon start="91700" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91814" stop="91789"/>
              <exon start="91700" stop="91177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91684" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91659" stop="91010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91644" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91625" stop="91119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91583" stop="91275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91583" stop="91385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91518" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91513" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91483" stop="90954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91473" stop="90871"/>
              <exon start="83649" stop="83636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247704" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91472" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250162" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91460" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259722" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91396" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248737" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91395" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91393" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257067" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91392" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251882" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91384" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91335" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245033" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91268" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91256" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249599" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATCAAAACACTCAACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG : CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG : GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGTGTTACCTTTTGGCTGTTTCATA : GAAATAACAAAAAA</gDNA_template>
            <first_frame> C  I  K  T  L  N  T  H  S  L  Q  T  S  K  M  A  N  P  Q  Q  P  L  L  I  K  T  H  K  Q  N  P  I  I  S  F  K  I  L  S  F  V  I  T  L  F  V  A  L  F  L  V  A  P  Y  Q  V  E  I  K  H  S  N  L  C  K  T  A  Q  D  S  Q  L  C  L  S  Y  V  S  D  L  I  S  N  E  I  V  T  T  E  S  D  G  H  S  I  L  M  K  F  L  V  N  Y  V  H  Q  M  N  N  A  I  P  V  V  R  K  M  K  N  Q  I  N  D  I  R  Q  H  G  A  L  T  D  C  L  E  L  L  D  Q  S  V  D  F  A  S  D  S  I  A  A  I  D  K  R  S  R  S  E  H  A  N  A  Q  S  W  L  S  G  V  L  T  N  H  V  T  C  L  D  E  L  D  S  F  T  K  A  M  I  N  G  T  N  L  E  E  L  I  S  R  A  K  V  A  L  A  M  L  A  S  L  T  T  Q  D  E  D  V  F  M  T  V  L  G  K  M  P  S  W  V  S  S  M  D  R  K  L  M  E  S  S  G  K  D  I  I  A  N  A  V  V  A  Q  D  G  T  G  D  Y  Q  T  L  A  E  A  V  A  A  A  P  D  K  S  K  T  R  Y  V  I  Y  V  K  R  G  T  Y  K  E  N  V  E  V  A  S  N  K  M  N  L  M  I  V  G  D  G  M  Y  A  T  T  I  T  G  S  L  N  V  V  D  G  S  T  T  F  R  S  A  T  L   : A  A  V  G  Q  G  F  I  L  Q  D  I  C  I  Q  N  T  A  G  P  A  K  D  Q  A  V  A  L  R  V  G  A  D  M  S  V  I  N  R  C  R  I  D  A  Y  Q  D  T  L  Y  A  H  S  Q  R  Q  F  Y  R  D  S  Y  V  T   : G  T  V  D  F  I  F  G  N  A  A  V  V  F  Q  K  C  Q  L  V  A  R  K  P  G  K  Y  Q  Q  N  M  V  T  A  Q  G  R  T  D  P  N  Q  A  T  G  T  S  I  Q  F  C  N  I  I  A  S  S  D  L  E  P  V  L  K  E  F  P  T  Y  L  G  R  P  W  K  E  Y  S  R  T  V  V  M  E  S  Y  L  G  G  L  I  N  P  A  G  W  A  E  W  D  G  D  F  A  L  K  T  L  Y  Y  G  E  F  M  N  N  G  P  G  A  G  T  S  K  R  V  K  W  P  G  Y  H  V  I  T  D  P  A  K  A  M  P  F  T  V  A  K  L  I  Q  G  G  S  W  L  R  S  T  G  V  A  Y  V  D  G  L  Y  D  *  S  I  Y  M  M  C  H  M  S  R  A  E  Q  A  *  H  T  T  L  V  *  Q  A  F  T  W  L  I  R  Y  Y  *  V  V  N  K  F  C  L  G  V  H  K  F  I  Y  V  Y  T  F  T  L  V  M  K  L  K  L  M  M  L  *  C  N  Y  S  F  L  K  K  D  M  S  N  I  S  F  S  Q  M  C  M  V  V  E  L  F  M  L  K  L  A  R  G  I  E  *  K  S  I  V  L  P  F  G  C  F  I  :  E  I  T  K   </first_frame>
            <second_frame>  V  S  K  H  S  T  H  I  V  C  K  L  L  K  W  L  I  L  N  N  L  C  *  *  K  H  T  N  K  I  Q  *  S  A  S  R  S  S  V  L  L  *  L  C  L  L  L  S  S  *  L  L  H  I  K  L  R  L  N  I  L  I  Y  V  K  L  H  K  I  P  N  S  V  S  V  M  S  L  I  *  Y  P  M  K  L  S  Q  Q  N  Q  M  D  I  V  F  *  *  N  F  *  L  T  M  S  I  K  *  T  M  Q  F  Q  W  F  A  K  *  R  I  R  S  M  T  F  V  N  T  G  L  *  L  I  V  L  S  F  L  I  S  Q  L  I  S  H  L  I  Q  L  Q  Q  L  I  K  E  V  A  R  S  M  P  M  R  K  V  G  *  V  V  C  L  L  T  T  L  R  A  W  M  S  L  I  P  L  L  K  L  *  *  M  E  R  I  L  K  S  *  S  R  E  L  R  *  H  *  R  C  L  R  L  *  Q  L  R  M  R  M  F  S  *  R  F  *  E  K  C  H  L  G  *  V  R  W  I  G  S  *  W  R  V  R  V  R  T  L  *  R  M  Q  W  W  H  K  M  E  R  G  I  I  K  H  L  L  K  Q  L  L  Q  H  Q  I  R  V  R  R  V  M  *  F  M  *  R  G  E  L  I  K  R  M  L  R  W  L  A  I  K  *  T  *  *  L  L  V  M  E  C  M  L  R  P  L  L  V  A  L  M  L  S  M  D  Q  Q  P  S  A  L  P  L  L  :  L  Q  S  A  K  D  L  Y  Y  R  T  Y  V  Y  R  T  Q  Q  G  Q  R  K  T  K  Q  W  H  F  E  L  E  L  I  C  L  S  *  I  V  V  V  S  M  L  I  K  T  P  F  M  H  I  L  K  G  N  S  I  E  T  P  T  *  Q  :  V  L  L  I  S  Y  L  V  M  Q  Q  L  Y  S  R  N  A  S  S  *  L  E  N  R  V  N  T  S  K  T  W  *  L  H  K  A  G  R  T  Q  I  R  P  R  G  H  Q  F  S  S  V  T  *  *  Q  V  R  T  *  N  Q  S  *  K  N  S  Q  H  I  L  V  G  H  G  K  N  I  Q  E  L  *  *  W  N  H  T  *  V  V  S  L  I  Q  R  V  G  L  S  G  T  E  I  L  R  *  R  H  C  I  M  V  N  L  *  T  M  D  L  V  L  V  L  V  S  V  S  S  G  L  V  I  M  S  L  L  I  P  L  K  L  C  R  S  L  W  L  S  *  F  R  A  D  H  G  *  G  L  L  A  W  R  M  W  M  D  Y  M  I  R  V  Y  I  *  C  A  T  *  A  G  Q  S  K  H  N  T  Q  L  *  C  D  K  H  L  H  G  S  F  V  T  T  K  L  S  I  S  S  V  *  G  F  I  S  L  Y  T  Y  I  H  L  H  W  *  *  S  *  N  *  *  C  F  N  V  I  I  V  F  *  K  R  I  *  V  I  L  V  F  P  R  C  V  W  L  W  N  C  L  C  L  N  W  Q  G  V  L  N  K  N  L  L  C  Y  L  L  A  V  S  * :   K  *  Q  K  </second_frame>
            <third_frame>   Y  Q  N  T  Q  H  T  *  F  A  N  F  *  N  G  *  S  S  T  T  F  V  N  K  N  T  Q  T  K  S  N  N  Q  L  Q  D  P  Q  F  C  Y  N  F  V  C  C  S  L  L  S  C  S  I  S  S  *  D  *  T  F  *  S  M  *  N  C  T  R  F  P  T  L  S  Q  L  C  L  *  F  D  I  Q  *  N  C  H  N  R  I  R  W  T  *  Y  S  D  E  I  F  S  *  L  C  P  S  N  E  Q  C  N  S  S  G  S  Q  N  E  E  S  D  Q  *  H  S  S  T  R  G  F  N  *  L  S  *  A  S  *  S  V  S  *  F  R  I  *  F  N  C  S  N  *  *  K  K  S  L  G  A  C  Q  C  A  K  L  A  K  W  C  A  Y  *  P  R  Y  V  L  G  *  A  *  F  L  Y  *  S  Y  D  K  W  N  E  S  *  R  V  D  L  E  S  *  G  S  I  S  D  A  C  V  F  D  N  S  G  *  G  C  F  H  D  G  F  R  K  N  A  I  L  G  E  F  D  G  *  E  A  D  G  E  F  G  *  G  H  Y  S  E  C  S  G  G  T  R  W  N  G  G  L  S  N  T  C  *  S  S  C  C  S  T  R  *  E  *  D  A  L  C  N  L  C  K  E  G  N  L  *  R  E  C  *  G  G  *  Q  *  N  E  L  D  D  C  W  *  W  N  V  C  Y  D  H  Y  W  *  P  *  C  C  R  W  I  N  N  L  P  L  C  H  S  C :   C  S  R  P  R  I  Y  T  T  G  H  M  Y  T  E  H  S  R  A  S  E  R  P  S  S  G  T  S  S  W  S  *  Y  V  C  H  K  S  L  S  Y  R  C  L  S  R  H  P  L  C  T  F  S  K  A  I  L  S  R  L  L  R  D  R :   Y  C  *  F  H  I  W  *  C  S  S  C  I  P  E  M  P  A  R  S  *  K  T  G  *  I  P  A  K  H  G  D  C  T  R  Q  D  G  P  K  S  G  H  G  D  I  N  S  V  L  *  H  N  S  K  F  G  P  R  T  S  P  E  R  I  P  N  I  S  W  *  A  M  E  R  I  F  K  N  C  S  D  G  I  I  L  R  W  S  H  *  S  S  G  L  G  *  V  G  R  R  F  C  V  E  D  I  V  L  W  *  I  Y  E  Q  W  T  W  C  W  Y  *  *  A  C  Q  V  A  W  L  S  C  H  Y  *  S  R  *  S  Y  A  V  H  C  G  *  A  D  S  G  R  I  M  V  E  V  Y  W  R  G  V  C  G  W  I  I  *  L  E  Y  I  Y  D  V  P  H  E  Q  G  R  A  S  I  T  H  N  S  S  V  T  S  I  Y  M  A  H  S  L  L  L  S  C  Q  *  V  L  F  R  G  S  *  V  Y  I  R  I  Y  I  Y  I  G  D  E  A  E  T  D  D  A  L  M  *  L  *  F  S  E  K  G  Y  E  *  Y  *  F  F  P  D  V  Y  G  C  G  T  V  Y  A  *  I  G  K  G  Y  *  I  K  I  Y  C  V  T  F  W  L  F  H   : R  N  N  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93163" stop="92179"/>
                    <exon start="91980" stop="91789"/>
                    <exon start="91700" stop="91195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1680</number_coding_nucleotides>
                  <number_encoded_amino_acids>560</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIKTLNTHSLQTSKMANPQQPLLIKTHKQNPIISFKILSFVITLFVALFLVAPYQVEIKHSNLCKTAQDSQLCLSYVSDLISNEIVTTESDGHSILMKFLVNYVHQMNNAIPVVRKMKNQINDIRQHGALTDCLELLDQSVDFASDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELDSFTKAMINGTNLEELISRAKVALAMLASLTTQDEDVFMTVLGKMPSWVSSMDRKLMESSGKDIIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="93163" e_stop="92179"/>
            <exon e_start="91980" e_stop="91789"/>
            <exon e_start="91700" e_stop="90893"/>
            <exon e_start="89063" e_stop="89020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.659"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93163" e_stop="92179" e_length="985"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91980" e_stop="91789" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91788" i_stop="91701" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91700" e_stop="90893" e_length="808"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90892" i_stop="89064" i_length="1829"/>
          </intron>
          <exon e_serial="4" e_score="0.659">
            <gDNA_exon_boundary e_start="89063" e_stop="89020" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93163" stop="92323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93163" stop="92366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93148" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93148" stop="92828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93147" stop="92489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93147" stop="92570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93145" stop="92750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93144" stop="92366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="92326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="92589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93142" stop="92305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93141" stop="92234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93141" stop="92307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93141" stop="92365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93140" stop="92688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93138" stop="92506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93137" stop="92445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93137" stop="92614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93137" stop="92952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93136" stop="92629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93136" stop="92862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93135" stop="92405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93134" stop="92539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93134" stop="92680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93132" stop="92572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93132" stop="92770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93119" stop="92287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93116" stop="92572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93116" stop="92674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93093" stop="92511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93090" stop="92422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93090" stop="92509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93046" stop="92436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93046" stop="92477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93046" stop="92602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93024" stop="92179"/>
              <exon start="91980" stop="91941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93024" stop="92601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92977" stop="92377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92977" stop="92393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92977" stop="92431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92962" stop="92233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92952" stop="92475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92948" stop="92593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92939" stop="92377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92924" stop="92461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92869" stop="92328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92837" stop="92478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92829" stop="92378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92827" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92820" stop="92307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92765" stop="92379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92762" stop="92179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="91700" stop="91592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92732" stop="92179"/>
              <exon start="91980" stop="91794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92714" stop="92247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92707" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92644" stop="92179"/>
              <exon start="91980" stop="91872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92622" stop="92267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92620" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92620" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92595" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92580" stop="92179"/>
              <exon start="91980" stop="91826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256084" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92532" stop="92179"/>
              <exon start="91980" stop="91806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92531" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703828" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395181" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92528" stop="92179"/>
              <exon start="91980" stop="91804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92509" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92502" stop="92247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92500" stop="92179"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92482" stop="92179"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92457" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92438" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92401" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92399" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92386" stop="92220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92383" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92371" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92371" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92368" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92368" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92361" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92347" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92345" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92345" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92341" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92334" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92331" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92324" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92313" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92299" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92298" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92285" stop="92179"/>
              <exon start="91980" stop="91816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92279" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92270" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92236" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92232" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92216" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92212" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92188" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="90988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92187" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92184" stop="92179"/>
              <exon start="91980" stop="91789"/>
              <exon start="91700" stop="91426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91974" stop="91789"/>
              <exon start="91700" stop="91386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91965" stop="91789"/>
              <exon start="91700" stop="91089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91961" stop="91789"/>
              <exon start="91700" stop="91277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91960" stop="91789"/>
              <exon start="91700" stop="91272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91950" stop="91789"/>
              <exon start="91700" stop="91354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91936" stop="91789"/>
              <exon start="91700" stop="91279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91936" stop="91789"/>
              <exon start="91700" stop="91360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91926" stop="91789"/>
              <exon start="91700" stop="91102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91921" stop="91789"/>
              <exon start="91700" stop="91382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245487" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91919" stop="91789"/>
              <exon start="91700" stop="91288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91916" stop="91789"/>
              <exon start="91700" stop="91279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91906" stop="91789"/>
              <exon start="91700" stop="91178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91906" stop="91789"/>
              <exon start="91700" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91814" stop="91789"/>
              <exon start="91700" stop="91177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91684" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91659" stop="91010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91644" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91625" stop="91119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91583" stop="91275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91583" stop="91385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91518" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91513" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91484" stop="90893"/>
              <exon start="89063" stop="89020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249157" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91483" stop="90954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91472" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250162" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91460" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259722" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91396" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248737" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91395" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91393" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257067" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91392" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251882" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91384" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91335" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245033" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91268" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91256" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249599" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATCAAAACACTCAACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG : CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG : GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGT : GTCAAATATTATTAAAATAAATATAAAAAAGATAGAGATGAAAT</gDNA_template>
            <first_frame> C  I  K  T  L  N  T  H  S  L  Q  T  S  K  M  A  N  P  Q  Q  P  L  L  I  K  T  H  K  Q  N  P  I  I  S  F  K  I  L  S  F  V  I  T  L  F  V  A  L  F  L  V  A  P  Y  Q  V  E  I  K  H  S  N  L  C  K  T  A  Q  D  S  Q  L  C  L  S  Y  V  S  D  L  I  S  N  E  I  V  T  T  E  S  D  G  H  S  I  L  M  K  F  L  V  N  Y  V  H  Q  M  N  N  A  I  P  V  V  R  K  M  K  N  Q  I  N  D  I  R  Q  H  G  A  L  T  D  C  L  E  L  L  D  Q  S  V  D  F  A  S  D  S  I  A  A  I  D  K  R  S  R  S  E  H  A  N  A  Q  S  W  L  S  G  V  L  T  N  H  V  T  C  L  D  E  L  D  S  F  T  K  A  M  I  N  G  T  N  L  E  E  L  I  S  R  A  K  V  A  L  A  M  L  A  S  L  T  T  Q  D  E  D  V  F  M  T  V  L  G  K  M  P  S  W  V  S  S  M  D  R  K  L  M  E  S  S  G  K  D  I  I  A  N  A  V  V  A  Q  D  G  T  G  D  Y  Q  T  L  A  E  A  V  A  A  A  P  D  K  S  K  T  R  Y  V  I  Y  V  K  R  G  T  Y  K  E  N  V  E  V  A  S  N  K  M  N  L  M  I  V  G  D  G  M  Y  A  T  T  I  T  G  S  L  N  V  V  D  G  S  T  T  F  R  S  A  T  L   : A  A  V  G  Q  G  F  I  L  Q  D  I  C  I  Q  N  T  A  G  P  A  K  D  Q  A  V  A  L  R  V  G  A  D  M  S  V  I  N  R  C  R  I  D  A  Y  Q  D  T  L  Y  A  H  S  Q  R  Q  F  Y  R  D  S  Y  V  T   : G  T  V  D  F  I  F  G  N  A  A  V  V  F  Q  K  C  Q  L  V  A  R  K  P  G  K  Y  Q  Q  N  M  V  T  A  Q  G  R  T  D  P  N  Q  A  T  G  T  S  I  Q  F  C  N  I  I  A  S  S  D  L  E  P  V  L  K  E  F  P  T  Y  L  G  R  P  W  K  E  Y  S  R  T  V  V  M  E  S  Y  L  G  G  L  I  N  P  A  G  W  A  E  W  D  G  D  F  A  L  K  T  L  Y  Y  G  E  F  M  N  N  G  P  G  A  G  T  S  K  R  V  K  W  P  G  Y  H  V  I  T  D  P  A  K  A  M  P  F  T  V  A  K  L  I  Q  G  G  S  W  L  R  S  T  G  V  A  Y  V  D  G  L  Y  D  *  S  I  Y  M  M  C  H  M  S  R  A  E  Q  A  *  H  T  T  L  V  *  Q  A  F  T  W  L  I  R  Y  Y  *  V  V  N  K  F  C  L  G  V  H  K  F  I  Y  V  Y  T  F  T  L  V  M  K  L  K  L  M  M  L  *  C  N  Y  S  F  L  K  K  D  M  S  N  I  S  F  S  Q  M  C  M  V  V  E  L  F  M  L  K  L  A  R  G  I  E  *  K  S  I  V :   S  N  I  I  K  I  N  I  K  K  I  E  M  K  </first_frame>
            <second_frame>  V  S  K  H  S  T  H  I  V  C  K  L  L  K  W  L  I  L  N  N  L  C  *  *  K  H  T  N  K  I  Q  *  S  A  S  R  S  S  V  L  L  *  L  C  L  L  L  S  S  *  L  L  H  I  K  L  R  L  N  I  L  I  Y  V  K  L  H  K  I  P  N  S  V  S  V  M  S  L  I  *  Y  P  M  K  L  S  Q  Q  N  Q  M  D  I  V  F  *  *  N  F  *  L  T  M  S  I  K  *  T  M  Q  F  Q  W  F  A  K  *  R  I  R  S  M  T  F  V  N  T  G  L  *  L  I  V  L  S  F  L  I  S  Q  L  I  S  H  L  I  Q  L  Q  Q  L  I  K  E  V  A  R  S  M  P  M  R  K  V  G  *  V  V  C  L  L  T  T  L  R  A  W  M  S  L  I  P  L  L  K  L  *  *  M  E  R  I  L  K  S  *  S  R  E  L  R  *  H  *  R  C  L  R  L  *  Q  L  R  M  R  M  F  S  *  R  F  *  E  K  C  H  L  G  *  V  R  W  I  G  S  *  W  R  V  R  V  R  T  L  *  R  M  Q  W  W  H  K  M  E  R  G  I  I  K  H  L  L  K  Q  L  L  Q  H  Q  I  R  V  R  R  V  M  *  F  M  *  R  G  E  L  I  K  R  M  L  R  W  L  A  I  K  *  T  *  *  L  L  V  M  E  C  M  L  R  P  L  L  V  A  L  M  L  S  M  D  Q  Q  P  S  A  L  P  L  L  :  L  Q  S  A  K  D  L  Y  Y  R  T  Y  V  Y  R  T  Q  Q  G  Q  R  K  T  K  Q  W  H  F  E  L  E  L  I  C  L  S  *  I  V  V  V  S  M  L  I  K  T  P  F  M  H  I  L  K  G  N  S  I  E  T  P  T  *  Q  :  V  L  L  I  S  Y  L  V  M  Q  Q  L  Y  S  R  N  A  S  S  *  L  E  N  R  V  N  T  S  K  T  W  *  L  H  K  A  G  R  T  Q  I  R  P  R  G  H  Q  F  S  S  V  T  *  *  Q  V  R  T  *  N  Q  S  *  K  N  S  Q  H  I  L  V  G  H  G  K  N  I  Q  E  L  *  *  W  N  H  T  *  V  V  S  L  I  Q  R  V  G  L  S  G  T  E  I  L  R  *  R  H  C  I  M  V  N  L  *  T  M  D  L  V  L  V  L  V  S  V  S  S  G  L  V  I  M  S  L  L  I  P  L  K  L  C  R  S  L  W  L  S  *  F  R  A  D  H  G  *  G  L  L  A  W  R  M  W  M  D  Y  M  I  R  V  Y  I  *  C  A  T  *  A  G  Q  S  K  H  N  T  Q  L  *  C  D  K  H  L  H  G  S  F  V  T  T  K  L  S  I  S  S  V  *  G  F  I  S  L  Y  T  Y  I  H  L  H  W  *  *  S  *  N  *  *  C  F  N  V  I  I  V  F  *  K  R  I  *  V  I  L  V  F  P  R  C  V  W  L  W  N  C  L  C  L  N  W  Q  G  V  L  N  K  N  L  L   : C  Q  I  L  L  K  *  I  *  K  R  *  R  *  N </second_frame>
            <third_frame>   Y  Q  N  T  Q  H  T  *  F  A  N  F  *  N  G  *  S  S  T  T  F  V  N  K  N  T  Q  T  K  S  N  N  Q  L  Q  D  P  Q  F  C  Y  N  F  V  C  C  S  L  L  S  C  S  I  S  S  *  D  *  T  F  *  S  M  *  N  C  T  R  F  P  T  L  S  Q  L  C  L  *  F  D  I  Q  *  N  C  H  N  R  I  R  W  T  *  Y  S  D  E  I  F  S  *  L  C  P  S  N  E  Q  C  N  S  S  G  S  Q  N  E  E  S  D  Q  *  H  S  S  T  R  G  F  N  *  L  S  *  A  S  *  S  V  S  *  F  R  I  *  F  N  C  S  N  *  *  K  K  S  L  G  A  C  Q  C  A  K  L  A  K  W  C  A  Y  *  P  R  Y  V  L  G  *  A  *  F  L  Y  *  S  Y  D  K  W  N  E  S  *  R  V  D  L  E  S  *  G  S  I  S  D  A  C  V  F  D  N  S  G  *  G  C  F  H  D  G  F  R  K  N  A  I  L  G  E  F  D  G  *  E  A  D  G  E  F  G  *  G  H  Y  S  E  C  S  G  G  T  R  W  N  G  G  L  S  N  T  C  *  S  S  C  C  S  T  R  *  E  *  D  A  L  C  N  L  C  K  E  G  N  L  *  R  E  C  *  G  G  *  Q  *  N  E  L  D  D  C  W  *  W  N  V  C  Y  D  H  Y  W  *  P  *  C  C  R  W  I  N  N  L  P  L  C  H  S  C :   C  S  R  P  R  I  Y  T  T  G  H  M  Y  T  E  H  S  R  A  S  E  R  P  S  S  G  T  S  S  W  S  *  Y  V  C  H  K  S  L  S  Y  R  C  L  S  R  H  P  L  C  T  F  S  K  A  I  L  S  R  L  L  R  D  R :   Y  C  *  F  H  I  W  *  C  S  S  C  I  P  E  M  P  A  R  S  *  K  T  G  *  I  P  A  K  H  G  D  C  T  R  Q  D  G  P  K  S  G  H  G  D  I  N  S  V  L  *  H  N  S  K  F  G  P  R  T  S  P  E  R  I  P  N  I  S  W  *  A  M  E  R  I  F  K  N  C  S  D  G  I  I  L  R  W  S  H  *  S  S  G  L  G  *  V  G  R  R  F  C  V  E  D  I  V  L  W  *  I  Y  E  Q  W  T  W  C  W  Y  *  *  A  C  Q  V  A  W  L  S  C  H  Y  *  S  R  *  S  Y  A  V  H  C  G  *  A  D  S  G  R  I  M  V  E  V  Y  W  R  G  V  C  G  W  I  I  *  L  E  Y  I  Y  D  V  P  H  E  Q  G  R  A  S  I  T  H  N  S  S  V  T  S  I  Y  M  A  H  S  L  L  L  S  C  Q  *  V  L  F  R  G  S  *  V  Y  I  R  I  Y  I  Y  I  G  D  E  A  E  T  D  D  A  L  M  *  L  *  F  S  E  K  G  Y  E  *  Y  *  F  F  P  D  V  Y  G  C  G  T  V  Y  A  *  I  G  K  G  Y  *  I  K  I  Y  C  :  V  K  Y  Y  *  N  K  Y  K  K  D  R  D  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93163" stop="92179"/>
                    <exon start="91980" stop="91789"/>
                    <exon start="91700" stop="91195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1680</number_coding_nucleotides>
                  <number_encoded_amino_acids>560</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIKTLNTHSLQTSKMANPQQPLLIKTHKQNPIISFKILSFVITLFVALFLVAPYQVEIKHSNLCKTAQDSQLCLSYVSDLISNEIVTTESDGHSILMKFLVNYVHQMNNAIPVVRKMKNQINDIRQHGALTDCLELLDQSVDFASDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELDSFTKAMINGTNLEELISRAKVALAMLASLTTQDEDVFMTVLGKMPSWVSSMDRKLMESSGKDIIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="93163" e_stop="92179"/>
            <exon e_start="91980" e_stop="90874"/>
            <exon e_start="83649" e_stop="83636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.924" e_score="1.000"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="93163" e_stop="92179" e_length="985"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="92178" i_stop="91981" i_length="198"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91980" e_stop="90874" e_length="1107"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.924">
            <gDNA_intron_boundary i_start="90873" i_stop="83650" i_length="7224"/>
          </intron>
          <exon e_serial="3" e_score="0.786">
            <gDNA_exon_boundary e_start="83649" e_stop="83636" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93163" stop="92323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93163" stop="92366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93148" stop="92828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93147" stop="92489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93147" stop="92570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93145" stop="92750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93144" stop="92366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="92326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="92589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93142" stop="92305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93141" stop="92234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93141" stop="92307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93141" stop="92365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93140" stop="92688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93138" stop="92506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93137" stop="92445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93137" stop="92614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93137" stop="92952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93136" stop="92629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93136" stop="92862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93135" stop="92405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93134" stop="92539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93134" stop="92680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93132" stop="92572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93132" stop="92770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93119" stop="92287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93116" stop="92572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93116" stop="92674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93093" stop="92511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93090" stop="92422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93090" stop="92509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93046" stop="92436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93046" stop="92477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93046" stop="92602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93024" stop="92179"/>
              <exon start="91980" stop="91941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93024" stop="92601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92977" stop="92377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92977" stop="92393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92977" stop="92431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92962" stop="92233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92952" stop="92475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92948" stop="92593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92939" stop="92377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92924" stop="92461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92869" stop="92328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92837" stop="92478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92829" stop="92378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92820" stop="92307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92765" stop="92379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92762" stop="92179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92732" stop="92179"/>
              <exon start="91980" stop="91794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92714" stop="92247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92644" stop="92179"/>
              <exon start="91980" stop="91872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92622" stop="92267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92580" stop="92179"/>
              <exon start="91980" stop="91826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92551" stop="92194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92532" stop="92179"/>
              <exon start="91980" stop="91806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92528" stop="92179"/>
              <exon start="91980" stop="91804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92502" stop="92247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92458" stop="92179"/>
              <exon start="91980" stop="91825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92386" stop="92220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92285" stop="92179"/>
              <exon start="91980" stop="91816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91870" stop="91190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91684" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91668" stop="90874"/>
              <exon start="83649" stop="83636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91659" stop="91010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91644" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91625" stop="91119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91583" stop="91275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91583" stop="91385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91518" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91513" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91483" stop="90954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250938" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91472" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250162" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91460" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259722" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91396" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248737" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91395" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91393" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257067" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91392" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251882" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91384" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91335" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245033" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91268" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91256" stop="90893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249599" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATCAAAACACTCAACACACATAGTTTGCAAACTTCTAAAATGGCTAATCCTCAACAACCTTTGTTAATAAAAACACACAAACAAAATCCAATAATCAGCTTCAAGATCCTCAGTTTTGTTATAACTTTGTTTGTTGCTCTCTTCTTAGTTGCTCCATATCAAGTTGAGATTAAACATTCTAATCTATGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTCTCTGATTTGATATCCAATGAAATTGTCACAACAGAATCAGATGGACATAGTATTCTGATGAAATTTTTAGTTAACTATGTCCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATGAAGAATCAGATCAATGACATTCGTCAACACGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCAGTCAGTTGATTTCGCATCTGATTCAATTGCAGCAATTGATAAAAGAAGTCGCTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGAAGAGTTGATCTCGAGAGCTAAGGTAGCATTAGCGATGCTTGCGTCTTTGACAACTCAGGATGAGGATGTTTTCATGACGGTTTTAGGAAAAATGCCATCTTGGGTGAGTTCGATGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTATAGCGAATGCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCAGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGGCTAGCAATAAAATGAACTTGATGATTGTTGGTGATGGAATGTATGCTACGACCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG : CTGCAGTCGGCCAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGGCCAGCGAAAGACCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAGGTACTTGTGAAGTAGATTACCTCAAATGTGCTATACTCTCTATTGAACTCGGTATTAAAAAGTTTAAATCTTGAATCCGTCTCTGCAGGTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTAACATAATAGCAAGTTCGGACCTAGAACCAGTCCTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAGAATATTCAAGAACTGTAGTGATGGAATCATACTTAGGTGGTCTCATTAATCCAGCGGGTTGGGCTGAGTGGGACGGAGATTTTGCGTTGAAGACATTGTATTATGGTGAATTTATGAACAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGTTATCATGTCATTACTGATCCCGCTAAAGCTATGCCGTTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGGCGTGGCGTATGTGGATGGATTATATGATTAGAGTATATATATGATGTGCCACATGAGCAGGGCAGAGCAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCGTTACTACTAAGTTGTCAATAAGTTCTGTTTAGGGGTTCATAAGTTTATATACGTATATACATTTACATTGGTGATGAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGAGTAATATTAGTTTTTCCCAGATGTGTATGGTTGTGGAACTGTTTATGCTTAAATTGGCAAGGGGTATTGAATAAAAATCTATTGTGTTACCTTTTGGCTGTTTC : GAAATAACAAAAAA</gDNA_template>
            <first_frame> C  I  K  T  L  N  T  H  S  L  Q  T  S  K  M  A  N  P  Q  Q  P  L  L  I  K  T  H  K  Q  N  P  I  I  S  F  K  I  L  S  F  V  I  T  L  F  V  A  L  F  L  V  A  P  Y  Q  V  E  I  K  H  S  N  L  C  K  T  A  Q  D  S  Q  L  C  L  S  Y  V  S  D  L  I  S  N  E  I  V  T  T  E  S  D  G  H  S  I  L  M  K  F  L  V  N  Y  V  H  Q  M  N  N  A  I  P  V  V  R  K  M  K  N  Q  I  N  D  I  R  Q  H  G  A  L  T  D  C  L  E  L  L  D  Q  S  V  D  F  A  S  D  S  I  A  A  I  D  K  R  S  R  S  E  H  A  N  A  Q  S  W  L  S  G  V  L  T  N  H  V  T  C  L  D  E  L  D  S  F  T  K  A  M  I  N  G  T  N  L  E  E  L  I  S  R  A  K  V  A  L  A  M  L  A  S  L  T  T  Q  D  E  D  V  F  M  T  V  L  G  K  M  P  S  W  V  S  S  M  D  R  K  L  M  E  S  S  G  K  D  I  I  A  N  A  V  V  A  Q  D  G  T  G  D  Y  Q  T  L  A  E  A  V  A  A  A  P  D  K  S  K  T  R  Y  V  I  Y  V  K  R  G  T  Y  K  E  N  V  E  V  A  S  N  K  M  N  L  M  I  V  G  D  G  M  Y  A  T  T  I  T  G  S  L  N  V  V  D  G  S  T  T  F  R  S  A  T  L   : A  A  V  G  Q  G  F  I  L  Q  D  I  C  I  Q  N  T  A  G  P  A  K  D  Q  A  V  A  L  R  V  G  A  D  M  S  V  I  N  R  C  R  I  D  A  Y  Q  D  T  L  Y  A  H  S  Q  R  Q  F  Y  R  D  S  Y  V  T  G  T  C  E  V  D  Y  L  K  C  A  I  L  S  I  E  L  G  I  K  K  F  K  S  *  I  R  L  C  R  Y  C  *  F  H  I  W  *  C  S  S  C  I  P  E  M  P  A  R  S  *  K  T  G  *  I  P  A  K  H  G  D  C  T  R  Q  D  G  P  K  S  G  H  G  D  I  N  S  V  L  *  H  N  S  K  F  G  P  R  T  S  P  E  R  I  P  N  I  S  W  *  A  M  E  R  I  F  K  N  C  S  D  G  I  I  L  R  W  S  H  *  S  S  G  L  G  *  V  G  R  R  F  C  V  E  D  I  V  L  W  *  I  Y  E  Q  W  T  W  C  W  Y  *  *  A  C  Q  V  A  W  L  S  C  H  Y  *  S  R  *  S  Y  A  V  H  C  G  *  A  D  S  G  R  I  M  V  E  V  Y  W  R  G  V  C  G  W  I  I  *  L  E  Y  I  Y  D  V  P  H  E  Q  G  R  A  S  I  T  H  N  S  S  V  T  S  I  Y  M  A  H  S  L  L  L  S  C  Q  *  V  L  F  R  G  S  *  V  Y  I  R  I  Y  I  Y  I  G  D  E  A  E  T  D  D  A  L  M  *  L  *  F  S  E  K  G  Y  E  *  Y  *  F  F  P  D  V  Y  G  C  G  T  V  Y  A  *  I  G  K  G  Y  *  I  K  I  Y  C  V  T  F  W  L  F   : R  N  N  K  K </first_frame>
            <second_frame>  V  S  K  H  S  T  H  I  V  C  K  L  L  K  W  L  I  L  N  N  L  C  *  *  K  H  T  N  K  I  Q  *  S  A  S  R  S  S  V  L  L  *  L  C  L  L  L  S  S  *  L  L  H  I  K  L  R  L  N  I  L  I  Y  V  K  L  H  K  I  P  N  S  V  S  V  M  S  L  I  *  Y  P  M  K  L  S  Q  Q  N  Q  M  D  I  V  F  *  *  N  F  *  L  T  M  S  I  K  *  T  M  Q  F  Q  W  F  A  K  *  R  I  R  S  M  T  F  V  N  T  G  L  *  L  I  V  L  S  F  L  I  S  Q  L  I  S  H  L  I  Q  L  Q  Q  L  I  K  E  V  A  R  S  M  P  M  R  K  V  G  *  V  V  C  L  L  T  T  L  R  A  W  M  S  L  I  P  L  L  K  L  *  *  M  E  R  I  L  K  S  *  S  R  E  L  R  *  H  *  R  C  L  R  L  *  Q  L  R  M  R  M  F  S  *  R  F  *  E  K  C  H  L  G  *  V  R  W  I  G  S  *  W  R  V  R  V  R  T  L  *  R  M  Q  W  W  H  K  M  E  R  G  I  I  K  H  L  L  K  Q  L  L  Q  H  Q  I  R  V  R  R  V  M  *  F  M  *  R  G  E  L  I  K  R  M  L  R  W  L  A  I  K  *  T  *  *  L  L  V  M  E  C  M  L  R  P  L  L  V  A  L  M  L  S  M  D  Q  Q  P  S  A  L  P  L  L  :  L  Q  S  A  K  D  L  Y  Y  R  T  Y  V  Y  R  T  Q  Q  G  Q  R  K  T  K  Q  W  H  F  E  L  E  L  I  C  L  S  *  I  V  V  V  S  M  L  I  K  T  P  F  M  H  I  L  K  G  N  S  I  E  T  P  T  *  Q  V  L  V  K  *  I  T  S  N  V  L  Y  S  L  L  N  S  V  L  K  S  L  N  L  E  S  V  S  A  G  T  V  D  F  I  F  G  N  A  A  V  V  F  Q  K  C  Q  L  V  A  R  K  P  G  K  Y  Q  Q  N  M  V  T  A  Q  G  R  T  D  P  N  Q  A  T  G  T  S  I  Q  F  C  N  I  I  A  S  S  D  L  E  P  V  L  K  E  F  P  T  Y  L  G  R  P  W  K  E  Y  S  R  T  V  V  M  E  S  Y  L  G  G  L  I  N  P  A  G  W  A  E  W  D  G  D  F  A  L  K  T  L  Y  Y  G  E  F  M  N  N  G  P  G  A  G  T  S  K  R  V  K  W  P  G  Y  H  V  I  T  D  P  A  K  A  M  P  F  T  V  A  K  L  I  Q  G  G  S  W  L  R  S  T  G  V  A  Y  V  D  G  L  Y  D  *  S  I  Y  M  M  C  H  M  S  R  A  E  Q  A  *  H  T  T  L  V  *  Q  A  F  T  W  L  I  R  Y  Y  *  V  V  N  K  F  C  L  G  V  H  K  F  I  Y  V  Y  T  F  T  L  V  M  K  L  K  L  M  M  L  *  C  N  Y  S  F  L  K  K  D  M  S  N  I  S  F  S  Q  M  C  M  V  V  E  L  F  M  L  K  L  A  R  G  I  E  *  K  S  I  V  L  P  F  G  C  F  :  E  I  T  K   </second_frame>
            <third_frame>   Y  Q  N  T  Q  H  T  *  F  A  N  F  *  N  G  *  S  S  T  T  F  V  N  K  N  T  Q  T  K  S  N  N  Q  L  Q  D  P  Q  F  C  Y  N  F  V  C  C  S  L  L  S  C  S  I  S  S  *  D  *  T  F  *  S  M  *  N  C  T  R  F  P  T  L  S  Q  L  C  L  *  F  D  I  Q  *  N  C  H  N  R  I  R  W  T  *  Y  S  D  E  I  F  S  *  L  C  P  S  N  E  Q  C  N  S  S  G  S  Q  N  E  E  S  D  Q  *  H  S  S  T  R  G  F  N  *  L  S  *  A  S  *  S  V  S  *  F  R  I  *  F  N  C  S  N  *  *  K  K  S  L  G  A  C  Q  C  A  K  L  A  K  W  C  A  Y  *  P  R  Y  V  L  G  *  A  *  F  L  Y  *  S  Y  D  K  W  N  E  S  *  R  V  D  L  E  S  *  G  S  I  S  D  A  C  V  F  D  N  S  G  *  G  C  F  H  D  G  F  R  K  N  A  I  L  G  E  F  D  G  *  E  A  D  G  E  F  G  *  G  H  Y  S  E  C  S  G  G  T  R  W  N  G  G  L  S  N  T  C  *  S  S  C  C  S  T  R  *  E  *  D  A  L  C  N  L  C  K  E  G  N  L  *  R  E  C  *  G  G  *  Q  *  N  E  L  D  D  C  W  *  W  N  V  C  Y  D  H  Y  W  *  P  *  C  C  R  W  I  N  N  L  P  L  C  H  S  C :   C  S  R  P  R  I  Y  T  T  G  H  M  Y  T  E  H  S  R  A  S  E  R  P  S  S  G  T  S  S  W  S  *  Y  V  C  H  K  S  L  S  Y  R  C  L  S  R  H  P  L  C  T  F  S  K  A  I  L  S  R  L  L  R  D  R  Y  L  *  S  R  L  P  Q  M  C  Y  T  L  Y  *  T  R  Y  *  K  V  *  I  L  N  P  S  L  Q  V  L  L  I  S  Y  L  V  M  Q  Q  L  Y  S  R  N  A  S  S  *  L  E  N  R  V  N  T  S  K  T  W  *  L  H  K  A  G  R  T  Q  I  R  P  R  G  H  Q  F  S  S  V  T  *  *  Q  V  R  T  *  N  Q  S  *  K  N  S  Q  H  I  L  V  G  H  G  K  N  I  Q  E  L  *  *  W  N  H  T  *  V  V  S  L  I  Q  R  V  G  L  S  G  T  E  I  L  R  *  R  H  C  I  M  V  N  L  *  T  M  D  L  V  L  V  L  V  S  V  S  S  G  L  V  I  M  S  L  L  I  P  L  K  L  C  R  S  L  W  L  S  *  F  R  A  D  H  G  *  G  L  L  A  W  R  M  W  M  D  Y  M  I  R  V  Y  I  *  C  A  T  *  A  G  Q  S  K  H  N  T  Q  L  *  C  D  K  H  L  H  G  S  F  V  T  T  K  L  S  I  S  S  V  *  G  F  I  S  L  Y  T  Y  I  H  L  H  W  *  *  S  *  N  *  *  C  F  N  V  I  I  V  F  *  K  R  I  *  V  I  L  V  F  P  R  C  V  W  L  W  N  C  L  C  L  N  W  Q  G  V  L  N  K  N  L  L  C  Y  L  L  A  V  S :   K  *  Q  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93163" stop="92179"/>
                    <exon start="91980" stop="91715"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1248</number_coding_nucleotides>
                  <number_encoded_amino_acids>416</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIKTLNTHSLQTSKMANPQQPLLIKTHKQNPIISFKILSFVITLFVALFLVAPYQVEIKHSNLCKTAQDSQLCLSYVSDLISNEIVTTESDGHSILMKFLVNYVHQMNNAIPVVRKMKNQINDIRQHGALTDCLELLDQSVDFASDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELDSFTKAMINGTNLEELISRAKVALAMLASLTTQDEDVFMTVLGKMPSWVSSMDRKLMESSGKDIIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTCEVDYLKCAILSIELGIKKFKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="85285" PGL_stop="85708"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85285" e_stop="85708"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="85285" e_stop="85708" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85285" stop="85708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGATCAAATTTTTTCTTTGAATACGAAATTAAATTACAATACACAAAAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAACAAATTCAAAAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAGTCATTTTTAAAAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGGAGGATATATTGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTATATAACGGTAAGGGCATATATGAACCACTTTTTATACAAGAGGTATATCAGCTCCCAATGACAAAGTTGAAAG</gDNA_template>
            <first_frame> L  L  *  M  I  K  F  F  L  *  I  R  N  *  I  T  I  H  K  K  K  I  V  *  F  F  I  L  *  T  K  E  *  K  K  K  T  K  *  E  *  Q  I  Q  K  L  *  *  K  K  S  K  N  N  L  C  M  K  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  S  H  F  *  K  K  K  L  E  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  G  G  Y  I  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  F  I  Q  E  V  Y  Q  L  P  M  T  K  L  K  </first_frame>
            <second_frame>  Y  C  R  *  S  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  K  K  K  *  F  N  F  L  F  F  K  L  R  N  E  R  K  K  Q  N  K  N  N  K  F  K  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  V  I  F  K  K  K  N  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  E  D  I  L  *  V  I  L  *  R  Q  G  Y  M  *  A  V  Y  I  T  V  R  A  Y  M  N  H  F  L  Y  K  R  Y  I  S  S  Q  *  Q  S  *  K </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  L  N  T  K  L  N  Y  N  T  Q  K  K  N  S  L  I  F  Y  S  L  N  *  G  M  K  E  K  N  K  I  R  I  T  N  S  K  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  S  F  L  K  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  W  R  I  Y  C  E  S  F  C  N  G  R  G  I  C  E  P  F  I  *  R  *  G  H  I  *  T  T  F  Y  T  R  G  I  S  A  P  N  D  K  V  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85446" stop="85640"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMYEKKLKYTLNFDRRIIYTPKSFLKKKIRSNKYKFKTNFLTSVKWRIYCESFCNGRGICEPFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="90908" PGL_stop="91462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90908" e_stop="91462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="90908" e_stop="91462" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90908" stop="91462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90960" stop="91335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251977" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATACCCCTTGCCAATTTAAGCATAAACAGTTCCACAACCATACACATCTGGGAAAAACTAATATTACTCATATCCTTTTTCAGAAAACTATAATTACATTAAAGCATCATCAGTTTCAGCTTCATCACCAATGTAAATGTATATACGTATATAAACTTATGAACCCCTAAACAGAACTTATTGACAACTTAGTAGTAACGAATGAGCCATGTAAATGCTTGTCACACTAGAGTTGTGTGTTATGCTTGCTCTGCCCTGCTCATGTGGCACATCATATATATACTCTAATCATATAATCCATCCACATACGCCACGCCAGTAGACCTCAACCATGATCCGCCCTGAATCAGCTTAGCCACAGTGAACGGCATAGCTTTAGCGGGATCAGTAATGACATGATAACCAGGCCACTTGACACGCTTACTAGTACCAGCACCAGGTCCATTGTTCATAAATTCACCATAATACAATGTCTTCAACGCAAAATCTCCGTCCCACTCAGCCCAACCCGCTGGATTAATGAGACCACCTAAGTATGATTCCATCACTACA</gDNA_template>
            <first_frame> S  I  P  L  A  N  L  S  I  N  S  S  T  T  I  H  I  W  E  K  L  I  L  L  I  S  F  F  R  K  L  *  L  H  *  S  I  I  S  F  S  F  I  T  N  V  N  V  Y  T  Y  I  N  L  *  T  P  K  Q  N  L  L  T  T  *  *  *  R  M  S  H  V  N  A  C  H  T  R  V  V  C  Y  A  C  S  A  L  L  M  W  H  I  I  Y  I  L  *  S  Y  N  P  S  T  Y  A  T  P  V  D  L  N  H  D  P  P  *  I  S  L  A  T  V  N  G  I  A  L  A  G  S  V  M  T  *  *  P  G  H  L  T  R  L  L  V  P  A  P  G  P  L  F  I  N  S  P  *  Y  N  V  F  N  A  K  S  P  S  H  S  A  Q  P  A  G  L  M  R  P  P  K  Y  D  S  I  T  T </first_frame>
            <second_frame>  Q  Y  P  L  P  I  *  A  *  T  V  P  Q  P  Y  T  S  G  K  N  *  Y  Y  S  Y  P  F  S  E  N  Y  N  Y  I  K  A  S  S  V  S  A  S  S  P  M  *  M  Y  I  R  I  *  T  Y  E  P  L  N  R  T  Y  *  Q  L  S  S  N  E  *  A  M  *  M  L  V  T  L  E  L  C  V  M  L  A  L  P  C  S  C  G  T  S  Y  I  Y  S  N  H  I  I  H  P  H  T  P  R  Q  *  T  S  T  M  I  R  P  E  S  A  *  P  Q  *  T  A  *  L  *  R  D  Q  *  *  H  D  N  Q  A  T  *  H  A  Y  *  Y  Q  H  Q  V  H  C  S  *  I  H  H  N  T  M  S  S  T  Q  N  L  R  P  T  Q  P  N  P  L  D  *  *  D  H  L  S  M  I  P  S  L   </second_frame>
            <third_frame>   N  T  P  C  Q  F  K  H  K  Q  F  H  N  H  T  H  L  G  K  T  N  I  T  H  I  L  F  Q  K  T  I  I  T  L  K  H  H  Q  F  Q  L  H  H  Q  C  K  C  I  Y  V  Y  K  L  M  N  P  *  T  E  L  I  D  N  L  V  V  T  N  E  P  C  K  C  L  S  H  *  S  C  V  L  C  L  L  C  P  A  H  V  A  H  H  I  Y  T  L  I  I  *  S  I  H  I  R  H  A  S  R  P  Q  P  *  S  A  L  N  Q  L  S  H  S  E  R  H  S  F  S  G  I  S  N  D  M  I  T  R  P  L  D  T  L  T  S  T  S  T  R  S  I  V  H  K  F  T  I  I  Q  C  L  Q  R  K  I  S  V  P  L  S  P  T  R  W  I  N  E  T  T  *  V  *  F  H  H  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91246" stop="91443"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SALNQLSHSERHSFSGISNDMITRPLDTLTSTSTRSIVHKFTIIQCLQRKISVPLSPTRWINETT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="102832" PGL_stop="100677"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102832" e_stop="102363"/>
            <exon e_start="101873" e_stop="101313"/>
            <exon e_start="101209" e_stop="100677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="102832" e_stop="102363" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101873" e_stop="101313" e_length="561"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101209" e_stop="100677" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102832" stop="102363"/>
              <exon start="101873" stop="101651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102832" stop="102440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102831" stop="102363"/>
              <exon start="101873" stop="101844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102769" stop="102363"/>
              <exon start="101873" stop="101404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102769" stop="102363"/>
              <exon start="101873" stop="101529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102766" stop="102363"/>
              <exon start="101873" stop="101430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102766" stop="102363"/>
              <exon start="101873" stop="101479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102766" stop="102363"/>
              <exon start="101873" stop="101486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102764" stop="102363"/>
              <exon start="101873" stop="101531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102756" stop="102363"/>
              <exon start="101873" stop="101405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102756" stop="102363"/>
              <exon start="101873" stop="101405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102756" stop="102363"/>
              <exon start="101873" stop="101497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102756" stop="102363"/>
              <exon start="101873" stop="101505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102756" stop="102363"/>
              <exon start="101873" stop="101659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102756" stop="102363"/>
              <exon start="101873" stop="101804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102755" stop="102363"/>
              <exon start="101873" stop="101696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102755" stop="102363"/>
              <exon start="101873" stop="101724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102755" stop="102363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102754" stop="102363"/>
              <exon start="101873" stop="101541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102754" stop="102363"/>
              <exon start="101873" stop="101577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102752" stop="102363"/>
              <exon start="101873" stop="101405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102752" stop="102373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102751" stop="102363"/>
              <exon start="101873" stop="101443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102751" stop="102363"/>
              <exon start="101873" stop="101474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102751" stop="102363"/>
              <exon start="101873" stop="101559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102751" stop="102363"/>
              <exon start="101873" stop="101803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102751" stop="102363"/>
              <exon start="101873" stop="101841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102749" stop="102363"/>
              <exon start="101873" stop="101401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102748" stop="102363"/>
              <exon start="101873" stop="101535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102748" stop="102363"/>
              <exon start="101873" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102748" stop="102363"/>
              <exon start="101873" stop="101714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102748" stop="102363"/>
              <exon start="101873" stop="101715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102748" stop="102363"/>
              <exon start="101873" stop="101719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102748" stop="102363"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101317" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297558" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101187" stop="100725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101183" stop="100872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616621" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101169" stop="100864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101160" stop="100843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101147" stop="100731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101144" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101006" stop="100677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100980" stop="100733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCACTCAGCTCTACACTTGTCACTCCCCTATATATATCCTTCTTCTTCCCCTTCCATTTCCACACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG : GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG : GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTAATGGCCTTTTGAGGATTTACATCCAATTACTTTCAAATGCAAAATTTA</gDNA_template>
            <first_frame> S  S  L  S  S  T  L  V  T  P  L  Y  I  S  F  F  F  P  F  H  F  H  T  Q  N  S  K  H  N  L  L  R  P  K  S  Q  F  S  I  L  L  H  Q  W  L  P  P  *  L  P  L  L  F  P  R  L  I  S  L  T  H  T  N  H  P  S  M  A  F  Q  F  H  H  K  L  D  *  K  S  L  N  R  L  H  K  T  C  L  F  P  C  L  L  M  L  L  L  L  T  I  S  E  V  S  V  L  I  R  L  R  N  R  L  L  L  A  K  *  L  G  G  I  *  R  I  *  L  L  M  L  I  L  M  L  S  L  L  V  L  D  L  L  V  Y  L  V  L  M  N  S  A  R  T  L  M  F  R :   W  L  F  L  S  N  L  *  A  L  V  E  V  L  G  *  V  D  N  S  S  L  L  W  L  C  V  S  Q  H  I  F  S  *  T  S  *  A  L  T  T  T  S  K  T  T  T  W  S  S  N  T  L  P  C  S  P  Q  P  S  *  A  S  F  W  P  G  Q  M  *  S  S  S  M  L  L  Q  Q  R  T  L  S  *  R  T  E  E  S  V  V  L  S  L  T  G  L  W  F  P  R  T  T  T  H  N  P  A  W  T  L  M  L  W  R  L  R  L  W  S  A  L  V  A  T  T  A  P  W  A  P  P  V  L  R  G  S  G  A  L  A  *  S  T  V  S  L  E  *  K  L  W  T  *  T  L  L  R  T  R  L  L  D  L  P  E  R  S  Y  L  V  *  L  S  Q  E  W  K  L  L  K  L  M  E  H  H  E  W :   V  Q  L  L  E  L  *  *  Y  Q  D  R  R  Q  L  T  S  P  Y  E  R  W  D  C  P  T  P  L  M  E  L  Q  K  Q  A  S  S  R  S  L  C  W  L  Q  L  M  K  L  K  L  L  M  L  E  C  N  Y  S  F  L  S  K  D  Y  E  K  Y  *  F  F  L  D  K  *  V  W  L  W  W  *  *  *  I  G  K  G  M  M  N  K  S  L  Q  D  E  S  H  C  V  N  F  G  Y  F  I  L  I  Y  F  Y  F  E  T  F  M  E  E  S  R  F  *  F  W  S  F  L  E  *  S  F  R  P  F  G  L  C  T  *  Y  G  L  G  L  I  G  E  A  I  *  M  N  I  V  I  G  L  R  C  F  C  T  N  G  L  L  R  I  Y  I  Q  L  L  S  N  A  K  F  </first_frame>
            <second_frame>  H  H  S  A  L  H  L  S  L  P  Y  I  Y  P  S  S  S  P  S  I  S  T  L  K  T  Q  N  T  I  F  S  A  L  N  P  S  S  Q  F  F  S  I  N  G  F  H  L  S  F  L  C  Y  F  Q  D  *  F  H  *  H  T  Q  I  I  L  L  W  R  S  N  F  I  T  N  S  I  E  N  R  *  I  D  S  T  K  H  V  C  F  H  V  C  *  C  F  S  S  L  R  S  R  K  F  Q  F  *  S  D  *  G  I  D  C  C  S  R  N  D  S  E  V  Y  D  G  Y  D  Y  L  C  *  Y  *  C  C  H  C  W  C  W  I  C  W  F  I  L  C  L  *  T  Q  Q  E  P  *  C  S   : G  G  Y  S  *  A  I  C  E  P  W  W  R  C  L  A  R  W  T  T  L  L  C  Y  G  C  A  *  A  S  T  S  F  L  E  R  A  R  H  *  L  R  R  A  R  Q  L  R  G  H  Q  T  R  C  L  V  H  L  N  H  H  E  Q  A  F  G  Q  A  K  C  E  A  L  Q  C  C  C  N  R  G  P  Y  R  E  E  R  K  S  R  W  C  C  H  *  L  V  F  G  F  P  E  P  R  H  T  I  L  H  G  P  *  C  Y  G  G  *  D  C  G  Q  L  L  W  P  R  R  P  H  G  R  H  R  C  *  E  A  Q  E  H  W  H  D  Q  Q  C  P  W  N  E  S  F  G  H  E  R  C  *  G  R  D  C  *  T  Y  Q  R  G  R  T  W  Y  D  C  H  R  N  G  S  C  *  N  *  W  S  T  T  N   : G  S  N  F  W  S  Y  D  D  I  R  T  E  G  S  S  P  R  P  T  S  V  G  I  A  Q  R  P  *  W  N  C  R  N  K  R  P  P  G  A  Y  V  G  C  S  *  *  S  *  N  C  *  C  L  N  V  I  I  V  F  *  A  R  I  M  R  N  I  S  F  S  *  I  S  E  Y  G  C  G  G  D  D  K  L  V  R  G  *  *  I  R  V  F  K  M  K  V  I  V  L  T  L  A  I  L  F  *  F  I  S  I  S  K  L  L  W  K  K  V  D  F  S  F  G  R  S  L  N  N  L  L  G  L  L  G  F  V  L  D  M  V  W  A  S  L  E  K  P  Y  E  *  T  L  *  L  G  *  D  V  F  A  L  M  A  F  *  G  F  T  S  N  Y  F  Q  M  Q  N  L </second_frame>
            <third_frame>   I  T  Q  L  Y  T  C  H  S  P  I  Y  I  L  L  L  P  L  P  F  P  H  S  K  L  K  T  Q  S  S  P  P  *  I  P  V  L  N  S  S  P  S  M  A  S  T  L  A  S  S  V  I  S  K  T  N  F  I  D  T  H  K  S  S  F  Y  G  V  P  I  S  S  Q  T  R  L  K  I  V  K  S  T  P  Q  N  M  S  V  S  M  S  A  D  A  S  P  P  Y  D  L  G  S  F  S  F  N  P  I  K  E  S  I  V  A  R  E  M  T  R  R  Y  M  T  D  M  I  T  Y  A  D  T  D  V  V  I  V  G  A  G  S  A  G  L  S  C  A  Y  E  L  S  K  N  P  N  V  Q  :  V  A  I  L  E  Q  S  V  S  P  G  G  G  A  W  L  G  G  Q  L  F  S  A  M  V  V  R  K  P  A  H  L  F  L  N  E  L  G  I  D  Y  D  E  Q  D  N  Y  V  V  I  K  H  A  A  L  F  T  S  T  I  M  S  K  L  L  A  R  P  N  V  K  L  F  N  A  V  A  T  E  D  L  I  V  K  N  G  R  V  G  G  V  V  T  N  W  S  L  V  S  Q  N  H  D  T  Q  S  C  M  D  P  N  V  M  E  A  K  I  V  V  S  S  C  G  H  D  G  P  M  G  A  T  G  V  K  R  L  R  S  I  G  M  I  N  S  V  P  G  M  K  A  L  D  M  N  A  A  E  D  A  I  V  R  L  T  R  E  V  V  P  G  M  I  V  T  G  M  E  V  A  E  I  D  G  A  P  R  M  :  G  P  T  F  G  A  M  M  I  S  G  Q  K  A  A  H  L  A  L  R  A  L  G  L  P  N  A  L  D  G  T  A  E  T  S  V  L  P  E  L  M  L  A  A  A  D  E  A  E  I  A  D  A  *  M  *  L  *  F  S  K  Q  G  L  *  E  I  L  V  F  P  R  *  V  S  M  V  V  V  V  M  I  N  W  *  G  D  D  E  *  E  S  S  R  *  K  S  L  C  *  L  W  L  F  Y  F  D  L  F  L  F  R  N  F  Y  G  R  K  *  I  L  V  L  V  V  P  *  I  I  F  *  A  F  W  A  L  Y  L  I  W  F  G  P  H  W  R  S  H  M  N  E  H  C  D  W  A  K  M  F  L  H  *  W  P  F  E  D  L  H  P  I  T  F  K  C  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102731" stop="102363"/>
                    <exon start="101873" stop="101313"/>
                    <exon start="101209" stop="101048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1089</number_coding_nucleotides>
                  <number_encoded_amino_acids>363</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPVLNSSPSMASTLASSVISKTNFIDTHKSSFYGVPISSQTRLKIVKSTPQNMSVSMSADASPPYDLGSFSFNPIKESIVAREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVQVAILEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLNELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVATEDLIVKNGRVGGVVTNWSLVSQNHDTQSCMDPNVMEAKIVVSSCGHDGPMGATGVKRLRSIGMINSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALRALGLPNALDGTAETSVLPELMLAAADEAEIADA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102832" e_stop="102363"/>
            <exon e_start="101873" e_stop="101553"/>
            <exon e_start="101492" e_stop="101313"/>
            <exon e_start="101209" e_stop="100677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="102832" e_stop="102363" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102362" i_stop="101874" i_length="489"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101873" e_stop="101553" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101552" i_stop="101493" i_length="60"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="101492" e_stop="101313" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101209" e_stop="100677" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102832" stop="102363"/>
              <exon start="101873" stop="101651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102832" stop="102440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102831" stop="102363"/>
              <exon start="101873" stop="101844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102756" stop="102363"/>
              <exon start="101873" stop="101659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102756" stop="102363"/>
              <exon start="101873" stop="101804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102755" stop="102363"/>
              <exon start="101873" stop="101696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102755" stop="102363"/>
              <exon start="101873" stop="101724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102755" stop="102363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102754" stop="102363"/>
              <exon start="101873" stop="101577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102752" stop="102373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102751" stop="102363"/>
              <exon start="101873" stop="101559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102751" stop="102363"/>
              <exon start="101873" stop="101803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102751" stop="102363"/>
              <exon start="101873" stop="101841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102363"/>
              <exon start="101873" stop="101764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="102699" stop="102363"/>
              <exon start="101873" stop="101642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102689" stop="102363"/>
              <exon start="101873" stop="101844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102684" stop="102365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102683" stop="102363"/>
              <exon start="101873" stop="101649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102679" stop="102363"/>
              <exon start="101873" stop="101768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102676" stop="102363"/>
              <exon start="101873" stop="101644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102672" stop="102363"/>
              <exon start="101873" stop="101765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102671" stop="102363"/>
              <exon start="101873" stop="101680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102666" stop="102363"/>
              <exon start="101873" stop="101804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102649" stop="102363"/>
              <exon start="101873" stop="101607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102623" stop="102363"/>
              <exon start="101873" stop="101641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102623" stop="102363"/>
              <exon start="101873" stop="101680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102621" stop="102363"/>
              <exon start="101873" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102613" stop="102363"/>
              <exon start="101873" stop="101681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102590" stop="102363"/>
              <exon start="101873" stop="101644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102546" stop="102363"/>
              <exon start="101873" stop="101689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102491" stop="102363"/>
              <exon start="101873" stop="101618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101483" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101403" stop="101313"/>
              <exon start="101209" stop="100702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101390" stop="101313"/>
              <exon start="101209" stop="100701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101366" stop="101313"/>
              <exon start="101209" stop="100734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254122" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101363" stop="101313"/>
              <exon start="101209" stop="100733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284409" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101350" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281798" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101329" stop="101313"/>
              <exon start="101209" stop="100725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396349" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101321" stop="101313"/>
              <exon start="101209" stop="100745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101317" stop="101313"/>
              <exon start="101209" stop="100725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302107" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101317" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297558" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101187" stop="100725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101183" stop="100872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616621" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101169" stop="100864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101160" stop="100843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101147" stop="100731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101144" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101006" stop="100677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100980" stop="100733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCACTCAGCTCTACACTTGTCACTCCCCTATATATATCCTTCTTCTTCCCCTTCCATTTCCACACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAG : GTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGC : ATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG : GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTAATGGCCTTTTGAGGATTTACATCCAATTACTTTCAAATGCAAAATTTA</gDNA_template>
            <first_frame> S  S  L  S  S  T  L  V  T  P  L  Y  I  S  F  F  F  P  F  H  F  H  T  Q  N  S  K  H  N  L  L  R  P  K  S  Q  F  S  I  L  L  H  Q  W  L  P  P  *  L  P  L  L  F  P  R  L  I  S  L  T  H  T  N  H  P  S  M  A  F  Q  F  H  H  K  L  D  *  K  S  L  N  R  L  H  K  T  C  L  F  P  C  L  L  M  L  L  L  L  T  I  S  E  V  S  V  L  I  R  L  R  N  R  L  L  L  A  K  *  L  G  G  I  *  R  I  *  L  L  M  L  I  L  M  L  S  L  L  V  L  D  L  L  V  Y  L  V  L  M  N  S  A  R  T  L  M  F  R :   W  L  F  L  S  N  L  *  A  L  V  E  V  L  G  *  V  D  N  S  S  L  L  W  L  C  V  S  Q  H  I  F  S  *  T  S  *  A  L  T  T  T  S  K  T  T  T  W  S  S  N  T  L  P  C  S  P  Q  P  S  *  A  S  F  W  P  G  Q  M  *  S  S  S  M  L  L  Q  Q  R  T  L  S  *  R  T  E  E  S  V  V  L  S  L  T  G  L  W  F  P  R  T  T  T  H  N  P  A :   W  A  P  P  V  L  R  G  S  G  A  L  A  *  S  T  V  S  L  E  *  K  L  W  T  *  T  L  L  R  T  R  L  L  D  L  P  E  R  S  Y  L  V  *  L  S  Q  E  W  K  L  L  K  L  M  E  H  H  E  W :   V  Q  L  L  E  L  *  *  Y  Q  D  R  R  Q  L  T  S  P  Y  E  R  W  D  C  P  T  P  L  M  E  L  Q  K  Q  A  S  S  R  S  L  C  W  L  Q  L  M  K  L  K  L  L  M  L  E  C  N  Y  S  F  L  S  K  D  Y  E  K  Y  *  F  F  L  D  K  *  V  W  L  W  W  *  *  *  I  G  K  G  M  M  N  K  S  L  Q  D  E  S  H  C  V  N  F  G  Y  F  I  L  I  Y  F  Y  F  E  T  F  M  E  E  S  R  F  *  F  W  S  F  L  E  *  S  F  R  P  F  G  L  C  T  *  Y  G  L  G  L  I  G  E  A  I  *  M  N  I  V  I  G  L  R  C  F  C  T  N  G  L  L  R  I  Y  I  Q  L  L  S  N  A  K  F  </first_frame>
            <second_frame>  H  H  S  A  L  H  L  S  L  P  Y  I  Y  P  S  S  S  P  S  I  S  T  L  K  T  Q  N  T  I  F  S  A  L  N  P  S  S  Q  F  F  S  I  N  G  F  H  L  S  F  L  C  Y  F  Q  D  *  F  H  *  H  T  Q  I  I  L  L  W  R  S  N  F  I  T  N  S  I  E  N  R  *  I  D  S  T  K  H  V  C  F  H  V  C  *  C  F  S  S  L  R  S  R  K  F  Q  F  *  S  D  *  G  I  D  C  C  S  R  N  D  S  E  V  Y  D  G  Y  D  Y  L  C  *  Y  *  C  C  H  C  W  C  W  I  C  W  F  I  L  C  L  *  T  Q  Q  E  P  *  C  S   : G  G  Y  S  *  A  I  C  E  P  W  W  R  C  L  A  R  W  T  T  L  L  C  Y  G  C  A  *  A  S  T  S  F  L  E  R  A  R  H  *  L  R  R  A  R  Q  L  R  G  H  Q  T  R  C  L  V  H  L  N  H  H  E  Q  A  F  G  Q  A  K  C  E  A  L  Q  C  C  C  N  R  G  P  Y  R  E  E  R  K  S  R  W  C  C  H  *  L  V  F  G  F  P  E  P  R  H  T  I  L   : H  G  R  H  R  C  *  E  A  Q  E  H  W  H  D  Q  Q  C  P  W  N  E  S  F  G  H  E  R  C  *  G  R  D  C  *  T  Y  Q  R  G  R  T  W  Y  D  C  H  R  N  G  S  C  *  N  *  W  S  T  T  N   : G  S  N  F  W  S  Y  D  D  I  R  T  E  G  S  S  P  R  P  T  S  V  G  I  A  Q  R  P  *  W  N  C  R  N  K  R  P  P  G  A  Y  V  G  C  S  *  *  S  *  N  C  *  C  L  N  V  I  I  V  F  *  A  R  I  M  R  N  I  S  F  S  *  I  S  E  Y  G  C  G  G  D  D  K  L  V  R  G  *  *  I  R  V  F  K  M  K  V  I  V  L  T  L  A  I  L  F  *  F  I  S  I  S  K  L  L  W  K  K  V  D  F  S  F  G  R  S  L  N  N  L  L  G  L  L  G  F  V  L  D  M  V  W  A  S  L  E  K  P  Y  E  *  T  L  *  L  G  *  D  V  F  A  L  M  A  F  *  G  F  T  S  N  Y  F  Q  M  Q  N  L </second_frame>
            <third_frame>   I  T  Q  L  Y  T  C  H  S  P  I  Y  I  L  L  L  P  L  P  F  P  H  S  K  L  K  T  Q  S  S  P  P  *  I  P  V  L  N  S  S  P  S  M  A  S  T  L  A  S  S  V  I  S  K  T  N  F  I  D  T  H  K  S  S  F  Y  G  V  P  I  S  S  Q  T  R  L  K  I  V  K  S  T  P  Q  N  M  S  V  S  M  S  A  D  A  S  P  P  Y  D  L  G  S  F  S  F  N  P  I  K  E  S  I  V  A  R  E  M  T  R  R  Y  M  T  D  M  I  T  Y  A  D  T  D  V  V  I  V  G  A  G  S  A  G  L  S  C  A  Y  E  L  S  K  N  P  N  V  Q  :  V  A  I  L  E  Q  S  V  S  P  G  G  G  A  W  L  G  G  Q  L  F  S  A  M  V  V  R  K  P  A  H  L  F  L  N  E  L  G  I  D  Y  D  E  Q  D  N  Y  V  V  I  K  H  A  A  L  F  T  S  T  I  M  S  K  L  L  A  R  P  N  V  K  L  F  N  A  V  A  T  E  D  L  I  V  K  N  G  R  V  G  G  V  V  T  N  W  S  L  V  S  Q  N  H  D  T  Q  S  C  :  M  G  A  T  G  V  K  R  L  R  S  I  G  M  I  N  S  V  P  G  M  K  A  L  D  M  N  A  A  E  D  A  I  V  R  L  T  R  E  V  V  P  G  M  I  V  T  G  M  E  V  A  E  I  D  G  A  P  R  M  :  G  P  T  F  G  A  M  M  I  S  G  Q  K  A  A  H  L  A  L  R  A  L  G  L  P  N  A  L  D  G  T  A  E  T  S  V  L  P  E  L  M  L  A  A  A  D  E  A  E  I  A  D  A  *  M  *  L  *  F  S  K  Q  G  L  *  E  I  L  V  F  P  R  *  V  S  M  V  V  V  V  M  I  N  W  *  G  D  D  E  *  E  S  S  R  *  K  S  L  C  *  L  W  L  F  Y  F  D  L  F  L  F  R  N  F  Y  G  R  K  *  I  L  V  L  V  V  P  *  I  I  F  *  A  F  W  A  L  Y  L  I  W  F  G  P  H  W  R  S  H  M  N  E  H  C  D  W  A  K  M  F  L  H  *  W  P  F  E  D  L  H  P  I  T  F  K  C  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102731" stop="102363"/>
                    <exon start="101873" stop="101553"/>
                    <exon start="101492" stop="101313"/>
                    <exon start="101209" stop="101048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPVLNSSPSMASTLASSVISKTNFIDTHKSSFYGVPISSQTRLKIVKSTPQNMSVSMSADASPPYDLGSFSFNPIKESIVAREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVQVAILEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLNELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVATEDLIVKNGRVGGVVTNWSLVSQNHDTQSCMGATGVKRLRSIGMINSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALRALGLPNALDGTAETSVLPELMLAAADEAEIADA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="102832" e_stop="102369"/>
            <exon e_start="101830" e_stop="101313"/>
            <exon e_start="101209" e_stop="100677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102832" e_stop="102369" e_length="464"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102368" i_stop="101831" i_length="538"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101830" e_stop="101313" e_length="518"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101209" e_stop="100677" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102832" stop="102440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102752" stop="102373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102750" stop="102437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102748" stop="102369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102748" stop="102457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102746" stop="102458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102744" stop="102371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102744" stop="102549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102742" stop="102369"/>
              <exon start="101830" stop="101609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102741" stop="102369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102723" stop="102369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101799" stop="101313"/>
              <exon start="101209" stop="101174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101797" stop="101313"/>
              <exon start="101209" stop="101194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101763" stop="101313"/>
              <exon start="101209" stop="100987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101753" stop="101313"/>
              <exon start="101209" stop="101117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101749" stop="101313"/>
              <exon start="101209" stop="101031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101736" stop="101313"/>
              <exon start="101209" stop="101185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101723" stop="101313"/>
              <exon start="101209" stop="101174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101713" stop="101325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101707" stop="101313"/>
              <exon start="101209" stop="101180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101313"/>
              <exon start="101209" stop="100867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414903" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101670" stop="101313"/>
              <exon start="101209" stop="101141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101639" stop="101313"/>
              <exon start="101209" stop="101001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101617" stop="101313"/>
              <exon start="101209" stop="100748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101617" stop="101313"/>
              <exon start="101209" stop="100791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101602" stop="101313"/>
              <exon start="101209" stop="101037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101578" stop="101313"/>
              <exon start="101209" stop="100812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601637" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101573" stop="101313"/>
              <exon start="101209" stop="100741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101560" stop="101313"/>
              <exon start="101209" stop="100796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101553" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101553" stop="101313"/>
              <exon start="101209" stop="100856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273169" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101543" stop="101313"/>
              <exon start="101209" stop="100734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257120" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101525" stop="101313"/>
              <exon start="101209" stop="100862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101525" stop="101313"/>
              <exon start="101209" stop="100867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412603" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101501" stop="101313"/>
              <exon start="101209" stop="100919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101500" stop="101313"/>
              <exon start="101209" stop="100847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101483" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101403" stop="101313"/>
              <exon start="101209" stop="100702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101390" stop="101313"/>
              <exon start="101209" stop="100701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101366" stop="101313"/>
              <exon start="101209" stop="100734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254122" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101363" stop="101313"/>
              <exon start="101209" stop="100733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284409" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101350" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281798" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101329" stop="101313"/>
              <exon start="101209" stop="100725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396349" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101321" stop="101313"/>
              <exon start="101209" stop="100745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101317" stop="101313"/>
              <exon start="101209" stop="100725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302107" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101317" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297558" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101187" stop="100725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101183" stop="100872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616621" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101169" stop="100864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101160" stop="100843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101147" stop="100731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101144" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101006" stop="100677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100980" stop="100733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCACTCAGCTCTACACTTGTCACTCCCCTATATATATCCTTCTTCTTCCCCTTCCATTTCCACACTCAAAACTCAAAACACAATCTTCTCCGCCCTAAATCCCAGTTCTCAATTCTTCTCCATCAATGGCTTCCACCTTAGCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGTTAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAATCGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGTTTATCTTGTGCTTATGAACTCAGCAAGAACCCTAAT : GGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG : GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTAATGGCCTTTTGAGGATTTACATCCAATTACTTTCAAATGCAAAATTTA</gDNA_template>
            <first_frame> S  S  L  S  S  T  L  V  T  P  L  Y  I  S  F  F  F  P  F  H  F  H  T  Q  N  S  K  H  N  L  L  R  P  K  S  Q  F  S  I  L  L  H  Q  W  L  P  P  *  L  P  L  L  F  P  R  L  I  S  L  T  H  T  N  H  P  S  M  A  F  Q  F  H  H  K  L  D  *  K  S  L  N  R  L  H  K  T  C  L  F  P  C  L  L  M  L  L  L  L  T  I  S  E  V  S  V  L  I  R  L  R  N  R  L  L  L  A  K  *  L  G  G  I  *  R  I  *  L  L  M  L  I  L  M  L  S  L  L  V  L  D  L  L  V  Y  L  V  L  M  N  S  A  R  T  L  M :   A  R  W  T  T  L  L  C  Y  G  C  A  *  A  S  T  S  F  L  E  R  A  R  H  *  L  R  R  A  R  Q  L  R  G  H  Q  T  R  C  L  V  H  L  N  H  H  E  Q  A  F  G  Q  A  K  C  E  A  L  Q  C  C  C  N  R  G  P  Y  R  E  E  R  K  S  R  W  C  C  H  *  L  V  F  G  F  P  E  P  R  H  T  I  L  H  G  P  *  C  Y  G  G  *  D  C  G  Q  L  L  W  P  R  R  P  H  G  R  H  R  C  *  E  A  Q  E  H  W  H  D  Q  Q  C  P  W  N  E  S  F  G  H  E  R  C  *  G  R  D  C  *  T  Y  Q  R  G  R  T  W  Y  D  C  H  R  N  G  S  C  *  N  *  W  S  T  T  N   : G  S  N  F  W  S  Y  D  D  I  R  T  E  G  S  S  P  R  P  T  S  V  G  I  A  Q  R  P  *  W  N  C  R  N  K  R  P  P  G  A  Y  V  G  C  S  *  *  S  *  N  C  *  C  L  N  V  I  I  V  F  *  A  R  I  M  R  N  I  S  F  S  *  I  S  E  Y  G  C  G  G  D  D  K  L  V  R  G  *  *  I  R  V  F  K  M  K  V  I  V  L  T  L  A  I  L  F  *  F  I  S  I  S  K  L  L  W  K  K  V  D  F  S  F  G  R  S  L  N  N  L  L  G  L  L  G  F  V  L  D  M  V  W  A  S  L  E  K  P  Y  E  *  T  L  *  L  G  *  D  V  F  A  L  M  A  F  *  G  F  T  S  N  Y  F  Q  M  Q  N  L </first_frame>
            <second_frame>  H  H  S  A  L  H  L  S  L  P  Y  I  Y  P  S  S  S  P  S  I  S  T  L  K  T  Q  N  T  I  F  S  A  L  N  P  S  S  Q  F  F  S  I  N  G  F  H  L  S  F  L  C  Y  F  Q  D  *  F  H  *  H  T  Q  I  I  L  L  W  R  S  N  F  I  T  N  S  I  E  N  R  *  I  D  S  T  K  H  V  C  F  H  V  C  *  C  F  S  S  L  R  S  R  K  F  Q  F  *  S  D  *  G  I  D  C  C  S  R  N  D  S  E  V  Y  D  G  Y  D  Y  L  C  *  Y  *  C  C  H  C  W  C  W  I  C  W  F  I  L  C  L  *  T  Q  Q  E  P  *   : W  L  G  G  Q  L  F  S  A  M  V  V  R  K  P  A  H  L  F  L  N  E  L  G  I  D  Y  D  E  Q  D  N  Y  V  V  I  K  H  A  A  L  F  T  S  T  I  M  S  K  L  L  A  R  P  N  V  K  L  F  N  A  V  A  T  E  D  L  I  V  K  N  G  R  V  G  G  V  V  T  N  W  S  L  V  S  Q  N  H  D  T  Q  S  C  M  D  P  N  V  M  E  A  K  I  V  V  S  S  C  G  H  D  G  P  M  G  A  T  G  V  K  R  L  R  S  I  G  M  I  N  S  V  P  G  M  K  A  L  D  M  N  A  A  E  D  A  I  V  R  L  T  R  E  V  V  P  G  M  I  V  T  G  M  E  V  A  E  I  D  G  A  P  R  M  :  G  P  T  F  G  A  M  M  I  S  G  Q  K  A  A  H  L  A  L  R  A  L  G  L  P  N  A  L  D  G  T  A  E  T  S  V  L  P  E  L  M  L  A  A  A  D  E  A  E  I  A  D  A  *  M  *  L  *  F  S  K  Q  G  L  *  E  I  L  V  F  P  R  *  V  S  M  V  V  V  V  M  I  N  W  *  G  D  D  E  *  E  S  S  R  *  K  S  L  C  *  L  W  L  F  Y  F  D  L  F  L  F  R  N  F  Y  G  R  K  *  I  L  V  L  V  V  P  *  I  I  F  *  A  F  W  A  L  Y  L  I  W  F  G  P  H  W  R  S  H  M  N  E  H  C  D  W  A  K  M  F  L  H  *  W  P  F  E  D  L  H  P  I  T  F  K  C  K  I   </second_frame>
            <third_frame>   I  T  Q  L  Y  T  C  H  S  P  I  Y  I  L  L  L  P  L  P  F  P  H  S  K  L  K  T  Q  S  S  P  P  *  I  P  V  L  N  S  S  P  S  M  A  S  T  L  A  S  S  V  I  S  K  T  N  F  I  D  T  H  K  S  S  F  Y  G  V  P  I  S  S  Q  T  R  L  K  I  V  K  S  T  P  Q  N  M  S  V  S  M  S  A  D  A  S  P  P  Y  D  L  G  S  F  S  F  N  P  I  K  E  S  I  V  A  R  E  M  T  R  R  Y  M  T  D  M  I  T  Y  A  D  T  D  V  V  I  V  G  A  G  S  A  G  L  S  C  A  Y  E  L  S  K  N  P  N  :  G  *  V  D  N  S  S  L  L  W  L  C  V  S  Q  H  I  F  S  *  T  S  *  A  L  T  T  T  S  K  T  T  T  W  S  S  N  T  L  P  C  S  P  Q  P  S  *  A  S  F  W  P  G  Q  M  *  S  S  S  M  L  L  Q  Q  R  T  L  S  *  R  T  E  E  S  V  V  L  S  L  T  G  L  W  F  P  R  T  T  T  H  N  P  A  W  T  L  M  L  W  R  L  R  L  W  S  A  L  V  A  T  T  A  P  W  A  P  P  V  L  R  G  S  G  A  L  A  *  S  T  V  S  L  E  *  K  L  W  T  *  T  L  L  R  T  R  L  L  D  L  P  E  R  S  Y  L  V  *  L  S  Q  E  W  K  L  L  K  L  M  E  H  H  E  W :   V  Q  L  L  E  L  *  *  Y  Q  D  R  R  Q  L  T  S  P  Y  E  R  W  D  C  P  T  P  L  M  E  L  Q  K  Q  A  S  S  R  S  L  C  W  L  Q  L  M  K  L  K  L  L  M  L  E  C  N  Y  S  F  L  S  K  D  Y  E  K  Y  *  F  F  L  D  K  *  V  W  L  W  W  *  *  *  I  G  K  G  M  M  N  K  S  L  Q  D  E  S  H  C  V  N  F  G  Y  F  I  L  I  Y  F  Y  F  E  T  F  M  E  E  S  R  F  *  F  W  S  F  L  E  *  S  F  R  P  F  G  L  C  T  *  Y  G  L  G  L  I  G  E  A  I  *  M  N  I  V  I  G  L  R  C  F  C  T  N  G  L  L  R  I  Y  I  Q  L  L  S  N  A  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102369" stop="101313"/>
                    <exon start="101209" stop="101048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLGGQLFSAMVVRKPAHLFLNELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVATEDLIVKNGRVGGVVTNWSLVSQNHDTQSCMDPNVMEAKIVVSSCGHDGPMGATGVKRLRSIGMINSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALRALGLPNALDGTAETSVLPELMLAAADEAEIADA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102731" stop="102369"/>
                    <exon start="101830" stop="101825"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPVLNSSPSMASTLASSVISKTNFIDTHKSSFYGVPISSQTRLKIVKSTPQNMSVSMSADASPPYDLGSFSFNPIKESIVAREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="101879" e_stop="101313"/>
            <exon e_start="101209" e_stop="100677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="101879" e_stop="101313" e_length="567"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="101312" i_stop="101210" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101209" e_stop="100677" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101879" stop="101313"/>
              <exon start="101209" stop="101010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101878" stop="101313"/>
              <exon start="101209" stop="101182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101873" stop="101415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101869" stop="101397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101852" stop="101324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101852" stop="101412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101831" stop="101313"/>
              <exon start="101209" stop="101193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101799" stop="101313"/>
              <exon start="101209" stop="101174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101797" stop="101313"/>
              <exon start="101209" stop="101194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101763" stop="101313"/>
              <exon start="101209" stop="100987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101753" stop="101313"/>
              <exon start="101209" stop="101117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101749" stop="101313"/>
              <exon start="101209" stop="101031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101736" stop="101313"/>
              <exon start="101209" stop="101185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101723" stop="101313"/>
              <exon start="101209" stop="101174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101713" stop="101325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101707" stop="101313"/>
              <exon start="101209" stop="101180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101313"/>
              <exon start="101209" stop="100867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414903" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101670" stop="101313"/>
              <exon start="101209" stop="101141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101639" stop="101313"/>
              <exon start="101209" stop="101001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101617" stop="101313"/>
              <exon start="101209" stop="100748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101617" stop="101313"/>
              <exon start="101209" stop="100791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101602" stop="101313"/>
              <exon start="101209" stop="101037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101578" stop="101313"/>
              <exon start="101209" stop="100812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601637" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101573" stop="101313"/>
              <exon start="101209" stop="100741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101560" stop="101313"/>
              <exon start="101209" stop="100796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101553" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101553" stop="101313"/>
              <exon start="101209" stop="100856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273169" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101543" stop="101313"/>
              <exon start="101209" stop="100734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257120" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101525" stop="101313"/>
              <exon start="101209" stop="100862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101525" stop="101313"/>
              <exon start="101209" stop="100867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412603" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101501" stop="101313"/>
              <exon start="101209" stop="100919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101500" stop="101313"/>
              <exon start="101209" stop="100847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101483" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101403" stop="101313"/>
              <exon start="101209" stop="100702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101390" stop="101313"/>
              <exon start="101209" stop="100701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101366" stop="101313"/>
              <exon start="101209" stop="100734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254122" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101363" stop="101313"/>
              <exon start="101209" stop="100733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284409" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101350" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281798" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101329" stop="101313"/>
              <exon start="101209" stop="100725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396349" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101321" stop="101313"/>
              <exon start="101209" stop="100745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101317" stop="101313"/>
              <exon start="101209" stop="100725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302107" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101317" stop="101313"/>
              <exon start="101209" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297558" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101187" stop="100725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101183" stop="100872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616621" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101169" stop="100864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101160" stop="100843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101147" stop="100731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101144" stop="100739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280439" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101006" stop="100677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100980" stop="100733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGGACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCATCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTTATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTATGGAGGCTAAGATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGGCGCCACCGGTGTTAAGAGGCTCAGGAGCATTGGCATGATCAACAGTGTCCCTGGAATGAAAGCTTTGGACATGAACGCTGCTGAGGACGCGATTGTTAGACTTACCAGAGAGGTCGTACCTGGTATGATTGTCACAGGAATGGAAGTTGCTGAAATTGATGGAGCACCACGAATG : GGTCCAACTTTTGGAGCTATGATGATATCAGGACAGAAGGCAGCTCACCTCGCCCTACGAGCGTTGGGATTGCCCAACGCCCTTGATGGAACTGCAGAAACAAGCGTCCTCCCGGAGCTTATGTTGGCTGCAGCTGATGAAGCTGAAATTGCTGATGCTTGAATGTAATTATAGTTTTCTAAGCAAGGATTATGAGAAATATTAGTTTTTCCTAGATAAGTGAGTATGGTTGTGGTGGTGATGATAAATTGGTAAGGGGATGATGAATAAGAGTCTTCAAGATGAAAGTCATTGTGTTAACTTTGGCTATTTTATTTTGATTTATTTCTATTTCGAAACTTTTATGGAAGAAAGTAGATTTTAGTTTTGGTCGTTCCTTGAATAATCTTTTAGGCCTTTTGGGCTTTGTACTTGATATGGTTTGGGCCTCATTGGAGAAGCCATATGAATGAACATTGTGATTGGGCTAAGATGTTTTTGCACTAATGGCCTTTTGAGGATTTACATCCAATTACTTTCAAATGCAAAATTTA</gDNA_template>
            <first_frame> V  *  V  A  I  L  E  Q  S  V  S  P  G  G  G  A  W  L  G  G  Q  L  F  S  A  M  V  V  R  K  P  A  H  L  F  L  N  E  L  G  I  D  Y  D  E  Q  D  N  Y  V  V  I  K  H  A  A  L  F  T  S  T  I  M  S  K  L  L  A  R  P  N  V  K  L  F  N  A  V  A  T  E  D  L  I  V  K  N  G  R  V  G  G  V  V  T  N  W  S  L  V  S  Q  N  H  D  T  Q  S  C  M  D  P  N  V  M  E  A  K  I  V  V  S  S  C  G  H  D  G  P  M  G  A  T  G  V  K  R  L  R  S  I  G  M  I  N  S  V  P  G  M  K  A  L  D  M  N  A  A  E  D  A  I  V  R  L  T  R  E  V  V  P  G  M  I  V  T  G  M  E  V  A  E  I  D  G  A  P  R  M  :  G  P  T  F  G  A  M  M  I  S  G  Q  K  A  A  H  L  A  L  R  A  L  G  L  P  N  A  L  D  G  T  A  E  T  S  V  L  P  E  L  M  L  A  A  A  D  E  A  E  I  A  D  A  *  M  *  L  *  F  S  K  Q  G  L  *  E  I  L  V  F  P  R  *  V  S  M  V  V  V  V  M  I  N  W  *  G  D  D  E  *  E  S  S  R  *  K  S  L  C  *  L  W  L  F  Y  F  D  L  F  L  F  R  N  F  Y  G  R  K  *  I  L  V  L  V  V  P  *  I  I  F  *  A  F  W  A  L  Y  L  I  W  F  G  P  H  W  R  S  H  M  N  E  H  C  D  W  A  K  M  F  L  H  *  W  P  F  E  D  L  H  P  I  T  F  K  C  K  I   </first_frame>
            <second_frame>  Y  R  W  L  F  L  S  N  L  *  A  L  V  E  V  L  G  *  V  D  N  S  S  L  L  W  L  C  V  S  Q  H  I  F  S  *  T  S  *  A  L  T  T  T  S  K  T  T  T  W  S  S  N  T  L  P  C  S  P  Q  P  S  *  A  S  F  W  P  G  Q  M  *  S  S  S  M  L  L  Q  Q  R  T  L  S  *  R  T  E  E  S  V  V  L  S  L  T  G  L  W  F  P  R  T  T  T  H  N  P  A  W  T  L  M  L  W  R  L  R  L  W  S  A  L  V  A  T  T  A  P  W  A  P  P  V  L  R  G  S  G  A  L  A  *  S  T  V  S  L  E  *  K  L  W  T  *  T  L  L  R  T  R  L  L  D  L  P  E  R  S  Y  L  V  *  L  S  Q  E  W  K  L  L  K  L  M  E  H  H  E  W :   V  Q  L  L  E  L  *  *  Y  Q  D  R  R  Q  L  T  S  P  Y  E  R  W  D  C  P  T  P  L  M  E  L  Q  K  Q  A  S  S  R  S  L  C  W  L  Q  L  M  K  L  K  L  L  M  L  E  C  N  Y  S  F  L  S  K  D  Y  E  K  Y  *  F  F  L  D  K  *  V  W  L  W  W  *  *  *  I  G  K  G  M  M  N  K  S  L  Q  D  E  S  H  C  V  N  F  G  Y  F  I  L  I  Y  F  Y  F  E  T  F  M  E  E  S  R  F  *  F  W  S  F  L  E  *  S  F  R  P  F  G  L  C  T  *  Y  G  L  G  L  I  G  E  A  I  *  M  N  I  V  I  G  L  R  C  F  C  T  N  G  L  L  R  I  Y  I  Q  L  L  S  N  A  K  F  </second_frame>
            <third_frame>   I  G  G  Y  S  *  A  I  C  E  P  W  W  R  C  L  A  R  W  T  T  L  L  C  Y  G  C  A  *  A  S  T  S  F  L  E  R  A  R  H  *  L  R  R  A  R  Q  L  R  G  H  Q  T  R  C  L  V  H  L  N  H  H  E  Q  A  F  G  Q  A  K  C  E  A  L  Q  C  C  C  N  R  G  P  Y  R  E  E  R  K  S  R  W  C  C  H  *  L  V  F  G  F  P  E  P  R  H  T  I  L  H  G  P  *  C  Y  G  G  *  D  C  G  Q  L  L  W  P  R  R  P  H  G  R  H  R  C  *  E  A  Q  E  H  W  H  D  Q  Q  C  P  W  N  E  S  F  G  H  E  R  C  *  G  R  D  C  *  T  Y  Q  R  G  R  T  W  Y  D  C  H  R  N  G  S  C  *  N  *  W  S  T  T  N   : G  S  N  F  W  S  Y  D  D  I  R  T  E  G  S  S  P  R  P  T  S  V  G  I  A  Q  R  P  *  W  N  C  R  N  K  R  P  P  G  A  Y  V  G  C  S  *  *  S  *  N  C  *  C  L  N  V  I  I  V  F  *  A  R  I  M  R  N  I  S  F  S  *  I  S  E  Y  G  C  G  G  D  D  K  L  V  R  G  *  *  I  R  V  F  K  M  K  V  I  V  L  T  L  A  I  L  F  *  F  I  S  I  S  K  L  L  W  K  K  V  D  F  S  F  G  R  S  L  N  N  L  L  G  L  L  G  F  V  L  D  M  V  W  A  S  L  E  K  P  Y  E  *  T  L  *  L  G  *  D  V  F  A  L  M  A  F  *  G  F  T  S  N  Y  F  Q  M  Q  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101873" stop="101313"/>
                    <exon start="101209" stop="101048"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAILEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLNELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVATEDLIVKNGRVGGVVTNWSLVSQNHDTQSCMDPNVMEAKIVVSSCGHDGPMGATGVKRLRSIGMINSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALRALGLPNALDGTAETSVLPELMLAAADEAEIADA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="100731" PGL_stop="101109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100731" e_stop="101109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="100731" e_stop="101109" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100731" stop="101109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACATCTTAGCCCAATCACAATGTTCATTCATATGGCTTCTCCAATGAGGCCCAAACCATATCAAGTACAAAGCCCAAAAGGCCTAAAAGATTATTCAAGGAACGACCAAAACTAAAATCTACTTTCTTCCATAAAAGTTTCGAAATAGAAATAAATCAAAATAAAATAGCCAAAGTTAACACAATGACTTTCATCTTGAAGACTCTTATTCATCATCCCCTTACCAATTTATCATCACCACCACAACCATACTCACTTATCTAGGAAAAACTAATATTTCTCATAATCCTTGCTTAGAAAACTATAATTACATTCAAGCATCAGCAATTTCAGCTTCATCAGCTGCAGCCAACATAAGCTCCGGGAGGACGCTTG</gDNA_template>
            <first_frame> K  N  I  L  A  Q  S  Q  C  S  F  I  W  L  L  Q  *  G  P  N  H  I  K  Y  K  A  Q  K  A  *  K  I  I  Q  G  T  T  K  T  K  I  Y  F  L  P  *  K  F  R  N  R  N  K  S  K  *  N  S  Q  S  *  H  N  D  F  H  L  E  D  S  Y  S  S  S  P  Y  Q  F  I  I  T  T  T  T  I  L  T  Y  L  G  K  T  N  I  S  H  N  P  C  L  E  N  Y  N  Y  I  Q  A  S  A  I  S  A  S  S  A  A  A  N  I  S  S  G  R  T  L  </first_frame>
            <second_frame>  K  T  S  *  P  N  H  N  V  H  S  Y  G  F  S  N  E  A  Q  T  I  S  S  T  K  P  K  R  P  K  R  L  F  K  E  R  P  K  L  K  S  T  F  F  H  K  S  F  E  I  E  I  N  Q  N  K  I  A  K  V  N  T  M  T  F  I  L  K  T  L  I  H  H  P  L  T  N  L  S  S  P  P  Q  P  Y  S  L  I  *  E  K  L  I  F  L  I  I  L  A  *  K  T  I  I  T  F  K  H  Q  Q  F  Q  L  H  Q  L  Q  P  T  *  A  P  G  G  R  L </second_frame>
            <third_frame>   K  H  L  S  P  I  T  M  F  I  H  M  A  S  P  M  R  P  K  P  Y  Q  V  Q  S  P  K  G  L  K  D  Y  S  R  N  D  Q  N  *  N  L  L  S  S  I  K  V  S  K  *  K  *  I  K  I  K  *  P  K  L  T  Q  *  L  S  S  *  R  L  L  F  I  I  P  L  P  I  Y  H  H  H  H  N  H  T  H  L  S  R  K  N  *  Y  F  S  *  S  L  L  R  K  L  *  L  H  S  S  I  S  N  F  S  F  I  S  C  S  Q  H  K  L  R  E  D  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100744" stop="100998"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNHNVHSYGFSNEAQTISSTKPKRPKRLFKERPKLKSTFFHKSFEIEINQNKIAKVNTMTFILKTLIHHPLTNLSSPPQPYSLI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100914" stop="101108"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNDFHLEDSYSSSPYQFIITTTTILTYLGKTNISHNPCLENYNYIQASAISASSAAANISSGRTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="114234" PGL_stop="117860"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115763" e_stop="116197"/>
            <exon e_start="116428" e_stop="116652"/>
            <exon e_start="117152" e_stop="117301"/>
            <exon e_start="117393" e_stop="117470"/>
            <exon e_start="117599" e_stop="117860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.849" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115763" e_stop="116197" e_length="435"/>
          </exon>
          <intron i_serial="1" don_prob="0.849" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116428" e_stop="116652" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.971">
            <gDNA_intron_boundary i_start="116653" i_stop="117151" i_length="499"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117152" e_stop="117301" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.884" acc_prob="0.961">
            <gDNA_intron_boundary i_start="117302" i_stop="117392" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117393" e_stop="117470" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117471" i_stop="117598" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117599" e_stop="117860" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115763" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115766" stop="116197"/>
              <exon start="116428" stop="116584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116060" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592422" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116071" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610832" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116146" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607344" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116155" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117405" stop="117470"/>
              <exon start="117599" stop="117860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117447" stop="117470"/>
              <exon start="117599" stop="117860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAGGTGAGAACAATTGGGCTTGAATAAGGAAAAGAAGAAAACATTAAAAGAGGAAAACTTAAGGATGGTTAAGATTGAGAAAAAAAACAGAGCTGATCCACTTCATGCTTCCTTTTTGCAATCACAGGGCACAGCTGTTTGTACTGATTTTTCACAATGCAATGTGGCAGTTGTGTTGCATTAGATGTTATTGTATCATTTGTATCATGCCATTGAGATGACTGGTATATTTATTCTTCTGCAGATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAG : GTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATAGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACT : ATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTATGAGCCATCACCAATGCAG : GTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACG : GTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTCGTTTACAGCAAGTCTTGAAAACATTTTTCTTGCATCAAGAGTTCTGGTGATCTGCACCAAATATATTAGTAAATTTCTCGTGCAGGCGCTTTAATTTGTGGA</gDNA_template>
            <first_frame> I  T  S  H  T  M  G  I  V  I  Q  I  A  *  S  R  *  E  Q  L  G  L  N  K  E  K  K  K  T  L  K  E  E  N  L  R  M  V  K  I  E  K  K  N  R  A  D  P  L  H  A  S  F  L  Q  S  Q  G  T  A  V  C  T  D  F  S  Q  C  N  V  A  V  V  L  H  *  M  L  L  Y  H  L  Y  H  A  I  E  M  T  G  I  F  I  L  L  Q  M  M  E  D  L  V  A  P  I  K  L  D  S  Q  T  I  T  S  D  N  S  S  T  K  L  E  T  G  L  K  R  P  A  P  V  T  G  G  C  R  I  E  G  F  V  R  V  K  K  :  V  P  G  N  L  V  I  S  A  R  S  A  A  H  S  F  D  A  S  Q  M  N  M  S  H  V  I  S  S  F  S  F  G  K  T  I  T  P  K  V  M  S  D  I  K  I  L  L  P  H  L  G  R  S  H  D  R  L  N  G  N  S  Y  V  T  N  P  R  D  S  T  E  N  V  T  :  I  E  H  F  L  Q  V  V  K  T  E  V  M  T  R  S  Y  K  L  V  E  E  Y  E  Y  T  A  H  S  S  L  V  H  S  L  H  I  P  V  A  K  F  H  Y  E  P  S  P  M  Q  :  V  L  I  T  E  N  P  K  S  F  S  H  F  L  T  N  V  C  A  I  I  G  G  V  F  T  :  V  A  G  I  L  D  S  I  L  H  N  T  M  R  M  V  K  K  V  E  L  G  K  N  F  *  G  E  *  S  D  D  R  N  L  V  C  A  L  *  L  Y  A  L  K  L  Y  Y  I  R  Y  S  L  R  L  Q  Q  V  L  K  T  F  F  L  H  Q  E  F  W  *  S  A  P  N  I  L  V  N  F  S  C  R  R  F  N  L  W  </first_frame>
            <second_frame>  S  R  V  I  L  W  G  S  *  Y  R  *  L  S  Q  G  E  N  N  W  A  *  I  R  K  R  R  K  H  *  K  R  K  T  *  G  W  L  R  L  R  K  K  T  E  L  I  H  F  M  L  P  F  C  N  H  R  A  Q  L  F  V  L  I  F  H  N  A  M  W  Q  L  C  C  I  R  C  Y  C  I  I  C  I  M  P  L  R  *  L  V  Y  L  F  F  C  R  *  W  K  I  W  L  H  L  S  S  W  I  L  K  R  L  L  Q  I  I  R  L  P  S  W  K  L  A  *  K  D  L  L  L  *  L  E  D  A  E  *  K  V  L  Y  V  L  R  R :   F  L  A  T  L  S  Y  Q  L  V  Q  L  L  I  H  L  M  L  L  R  *  T  C  H  M  *  F  L  A  F  H  L  V  R  Q  L  L  R  R  L  *  V  I  S  K  Y  C  Y  H  I  W  V  E  A  M  I  G  *  M  V  T  H  M  L  L  I  Q  E  I  P  Q  K  M  L  L :   L  N  I  F  F  K  W  *  K  Q  R  *  *  Q  D  R  T  N  *  L  R  S  T  S  T  R  H  I  V  V  W  F  I  V  F  T  Y  Q  *  R  N  F  I  M  S  H  H  Q  C  R :   S  *  L  Q  K  I  P  S  P  F  H  I  F  L  P  M  S  A  L  L  L  V  V  F  S  R :   L  P  A  Y  W  T  R  F  C  T  T  Q  *  E  W  *  K  K  L  S  *  E  R  I  F  E  E  S  S  L  M  I  E  I  *  F  V  H  Y  N  Y  T  L  *  N  Y  T  I  L  D  I  L  F  V  Y  S  K  S  *  K  H  F  S  C  I  K  S  S  G  D  L  H  Q  I  Y  *  *  I  S  R  A  G  A  L  I  C  G </second_frame>
            <third_frame>   H  E  S  Y  Y  G  D  R  D  T  D  S  L  V  K  V  R  T  I  G  L  E  *  G  K  E  E  N  I  K  R  G  K  L  K  D  G  *  D  *  E  K  K  Q  S  *  S  T  S  C  F  L  F  A  I  T  G  H  S  C  L  Y  *  F  F  T  M  Q  C  G  S  C  V  A  L  D  V  I  V  S  F  V  S  C  H  *  D  D  W  Y  I  Y  S  S  A  D  D  G  R  F  G  C  T  Y  Q  A  G  F  S  N  D  Y  F  R  *  F  V  Y  Q  A  G  N  W  L  E  K  T  C  S  C  N  W  R  M  Q  N  R  R  F  C  T  C  *  E   : G  S  W  Q  P  C  H  I  S  S  F  S  C  S  F  I  *  C  F  S  D  E  H  V  T  C  N  F  *  L  F  I  W  *  D  N  Y  S  E  G  Y  E  *  Y  Q  N  T  A  T  T  F  G  S  K  P  *  *  V  E  W  *  L  I  C  Y  *  S  K  R  F  H  R  K  C  Y   : Y  *  T  F  S  S  S  G  E  N  R  G  D  D  K  I  V  Q  I  S  *  G  V  R  V  H  G  T  *  *  F  G  S  *  S  S  H  T  S  S  E  I  S  L  *  A  I  T  N  A   : G  L  D  Y  R  K  S  Q  V  L  F  T  F  S  Y  Q  C  L  R  Y  Y  W  W  C  F  H   : G  C  R  H  T  G  L  D  S  A  Q  H  N  E  N  G  E  K  S  *  A  R  K  E  F  L  R  R  V  V  *  *  *  K  F  S  L  C  T  I  I  I  R  F  K  I  I  L  Y  *  I  F  S  S  F  T  A  S  L  E  N  I  F  L  A  S  R  V  L  V  I  C  T  K  Y  I  S  K  F  L  V  Q  A  L  *  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115991" stop="116197"/>
                    <exon start="116428" stop="116652"/>
                    <exon start="117152" stop="117301"/>
                    <exon start="117393" stop="117470"/>
                    <exon start="117599" stop="117676"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLLYHLYHAIEMTGIFILLQMMEDLVAPIKLDSQTITSDNSSTKLETGLKRPAPVTGGCRIEGFVRVKKVPGNLVISARSAAHSFDASQMNMSHVISSFSFGKTITPKVMSDIKILLPHLGRSHDRLNGNSYVTNPRDSTENVTIEHFLQVVKTEVMTRSYKLVEEYEYTAHSSLVHSLHIPVAKFHYEPSPMQVLITENPKSFSHFLTNVCAIIGGVFTVAGILDSILHNTMRMVKKVELGKNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="114976" e_stop="115030"/>
            <exon e_start="115743" e_stop="115901"/>
            <exon e_start="116051" e_stop="116197"/>
            <exon e_start="116428" e_stop="116652"/>
            <exon e_start="117152" e_stop="117301"/>
            <exon e_start="117393" e_stop="117470"/>
            <exon e_start="117599" e_stop="117860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.956"/>
          <exon-intron don_prob="0.849" acc_prob="0.999" e_score="0.952"/>
          <exon-intron don_prob="0.994" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="114976" e_stop="115030" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115031" i_stop="115742" i_length="712"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="115743" e_stop="115901" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="115902" i_stop="116050" i_length="149"/>
          </intron>
          <exon e_serial="3" e_score="0.952">
            <gDNA_exon_boundary e_start="116051" e_stop="116197" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.849" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116428" e_stop="116652" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.971">
            <gDNA_intron_boundary i_start="116653" i_stop="117151" i_length="499"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117152" e_stop="117301" e_length="150"/>
          </exon>
          <intron i_serial="5" don_prob="0.884" acc_prob="0.961">
            <gDNA_intron_boundary i_start="117302" i_stop="117392" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="117393" e_stop="117470" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117471" i_stop="117598" i_length="128"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="117599" e_stop="117860" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114976" stop="115030"/>
              <exon start="115743" stop="115901"/>
              <exon start="116051" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114976" stop="115030"/>
              <exon start="115743" stop="115901"/>
              <exon start="116051" stop="116066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116060" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592422" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116071" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610832" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116146" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607344" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116155" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117405" stop="117470"/>
              <exon start="117599" stop="117860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117447" stop="117470"/>
              <exon start="117599" stop="117860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCACATACAAGGGTATCCCTCCATTCGCATCTTCAGAAAAGGAACTGATGTTAG : AGACGATCACGGACACCATGATCACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAGGTGAGAACAATTGGGCTTGAATAAGGAAAAGAAGAAAACATTAAAAGAGGAAAACTTAAGGATGGTTAAGATTGAGAAAAAAAACAGAGCTG : ATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAG : GTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATAGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACT : ATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTATGAGCCATCACCAATGCAG : GTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACG : GTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTCGTTTACAGCAAGTCTTGAAAACATTTTTCTTGCATCAAGAGTTCTGGTGATCTGCACCAAATATATTAGTAAATTTCTCGTGCAGGCGCTTTAATTTGTGGA</gDNA_template>
            <first_frame> I  T  Y  K  G  I  P  P  F  A  S  S  E  K  E  L  M  L   : E  T  I  T  D  T  M  I  T  S  H  T  M  G  I  V  I  Q  I  A  *  S  R  *  E  Q  L  G  L  N  K  E  K  K  K  T  L  K  E  E  N  L  R  M  V  K  I  E  K  K  N  R  A   : D  D  G  R  F  G  C  T  Y  Q  A  G  F  S  N  D  Y  F  R  *  F  V  Y  Q  A  G  N  W  L  E  K  T  C  S  C  N  W  R  M  Q  N  R  R  F  C  T  C  *  E   : G  S  W  Q  P  C  H  I  S  S  F  S  C  S  F  I  *  C  F  S  D  E  H  V  T  C  N  F  *  L  F  I  W  *  D  N  Y  S  E  G  Y  E  *  Y  Q  N  T  A  T  T  F  G  S  K  P  *  *  V  E  W  *  L  I  C  Y  *  S  K  R  F  H  R  K  C  Y   : Y  *  T  F  S  S  S  G  E  N  R  G  D  D  K  I  V  Q  I  S  *  G  V  R  V  H  G  T  *  *  F  G  S  *  S  S  H  T  S  S  E  I  S  L  *  A  I  T  N  A   : G  L  D  Y  R  K  S  Q  V  L  F  T  F  S  Y  Q  C  L  R  Y  Y  W  W  C  F  H   : G  C  R  H  T  G  L  D  S  A  Q  H  N  E  N  G  E  K  S  *  A  R  K  E  F  L  R  R  V  V  *  *  *  K  F  S  L  C  T  I  I  I  R  F  K  I  I  L  Y  *  I  F  S  S  F  T  A  S  L  E  N  I  F  L  A  S  R  V  L  V  I  C  T  K  Y  I  S  K  F  L  V  Q  A  L  *  F  V   </first_frame>
            <second_frame>  S  H  T  R  V  S  L  H  S  H  L  Q  K  R  N  *  C  *  :  R  R  S  R  T  P  *  S  R  V  I  L  W  G  S  *  Y  R  *  L  S  Q  G  E  N  N  W  A  *  I  R  K  R  R  K  H  *  K  R  K  T  *  G  W  L  R  L  R  K  K  T  E  L  :  M  M  E  D  L  V  A  P  I  K  L  D  S  Q  T  I  T  S  D  N  S  S  T  K  L  E  T  G  L  K  R  P  A  P  V  T  G  G  C  R  I  E  G  F  V  R  V  K  K  :  V  P  G  N  L  V  I  S  A  R  S  A  A  H  S  F  D  A  S  Q  M  N  M  S  H  V  I  S  S  F  S  F  G  K  T  I  T  P  K  V  M  S  D  I  K  I  L  L  P  H  L  G  R  S  H  D  R  L  N  G  N  S  Y  V  T  N  P  R  D  S  T  E  N  V  T  :  I  E  H  F  L  Q  V  V  K  T  E  V  M  T  R  S  Y  K  L  V  E  E  Y  E  Y  T  A  H  S  S  L  V  H  S  L  H  I  P  V  A  K  F  H  Y  E  P  S  P  M  Q  :  V  L  I  T  E  N  P  K  S  F  S  H  F  L  T  N  V  C  A  I  I  G  G  V  F  T  :  V  A  G  I  L  D  S  I  L  H  N  T  M  R  M  V  K  K  V  E  L  G  K  N  F  *  G  E  *  S  D  D  R  N  L  V  C  A  L  *  L  Y  A  L  K  L  Y  Y  I  R  Y  S  L  R  L  Q  Q  V  L  K  T  F  F  L  H  Q  E  F  W  *  S  A  P  N  I  L  V  N  F  S  C  R  R  F  N  L  W  </second_frame>
            <third_frame>   H  I  Q  G  Y  P  S  I  R  I  F  R  K  G  T  D  V  R :   D  D  H  G  H  H  D  H  E  S  Y  Y  G  D  R  D  T  D  S  L  V  K  V  R  T  I  G  L  E  *  G  K  E  E  N  I  K  R  G  K  L  K  D  G  *  D  *  E  K  K  Q  S  * :   *  W  K  I  W  L  H  L  S  S  W  I  L  K  R  L  L  Q  I  I  R  L  P  S  W  K  L  A  *  K  D  L  L  L  *  L  E  D  A  E  *  K  V  L  Y  V  L  R  R :   F  L  A  T  L  S  Y  Q  L  V  Q  L  L  I  H  L  M  L  L  R  *  T  C  H  M  *  F  L  A  F  H  L  V  R  Q  L  L  R  R  L  *  V  I  S  K  Y  C  Y  H  I  W  V  E  A  M  I  G  *  M  V  T  H  M  L  L  I  Q  E  I  P  Q  K  M  L  L :   L  N  I  F  F  K  W  *  K  Q  R  *  *  Q  D  R  T  N  *  L  R  S  T  S  T  R  H  I  V  V  W  F  I  V  F  T  Y  Q  *  R  N  F  I  M  S  H  H  Q  C  R :   S  *  L  Q  K  I  P  S  P  F  H  I  F  L  P  M  S  A  L  L  L  V  V  F  S  R :   L  P  A  Y  W  T  R  F  C  T  T  Q  *  E  W  *  K  K  L  S  *  E  R  I  F  E  E  S  S  L  M  I  E  I  *  F  V  H  Y  N  Y  T  L  *  N  Y  T  I  L  D  I  L  F  V  Y  S  K  S  *  K  H  F  S  C  I  K  S  S  G  D  L  H  Q  I  Y  *  *  I  S  R  A  G  A  L  I  C  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115869" stop="115901"/>
                    <exon start="116051" stop="116197"/>
                    <exon start="116428" stop="116652"/>
                    <exon start="117152" stop="117301"/>
                    <exon start="117393" stop="117470"/>
                    <exon start="117599" stop="117676"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GWLRLRKKTELMMEDLVAPIKLDSQTITSDNSSTKLETGLKRPAPVTGGCRIEGFVRVKKVPGNLVISARSAAHSFDASQMNMSHVISSFSFGKTITPKVMSDIKILLPHLGRSHDRLNGNSYVTNPRDSTENVTIEHFLQVVKTEVMTRSYKLVEEYEYTAHSSLVHSLHIPVAKFHYEPSPMQVLITENPKSFSHFLTNVCAIIGGVFTVAGILDSILHNTMRMVKKVELGKNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="114234" e_stop="114312"/>
            <exon e_start="114974" e_stop="115030"/>
            <exon e_start="115743" e_stop="115809"/>
            <exon e_start="116051" e_stop="116197"/>
            <exon e_start="116428" e_stop="116652"/>
            <exon e_start="117152" e_stop="117301"/>
            <exon e_start="117393" e_stop="117470"/>
            <exon e_start="117599" e_stop="117860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.835"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.399" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.835">
            <gDNA_exon_boundary e_start="114234" e_stop="114312" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114313" i_stop="114973" i_length="661"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114974" e_stop="115030" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115031" i_stop="115742" i_length="712"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115743" e_stop="115809" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.399" acc_prob="0.995">
            <gDNA_intron_boundary i_start="115810" i_stop="116050" i_length="241"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116051" e_stop="116197" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.849" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116198" i_stop="116427" i_length="230"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116428" e_stop="116652" e_length="225"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.971">
            <gDNA_intron_boundary i_start="116653" i_stop="117151" i_length="499"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="117152" e_stop="117301" e_length="150"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.961">
            <gDNA_intron_boundary i_start="117302" i_stop="117392" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="117393" e_stop="117470" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117471" i_stop="117598" i_length="128"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="117599" e_stop="117860" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114234" stop="114312"/>
              <exon start="114974" stop="115030"/>
              <exon start="115743" stop="115809"/>
              <exon start="116051" stop="116197"/>
              <exon start="116428" stop="116522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114234" stop="114312"/>
              <exon start="114974" stop="115030"/>
              <exon start="115743" stop="115809"/>
              <exon start="116051" stop="116197"/>
              <exon start="116428" stop="116521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116060" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592422" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116071" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610832" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116146" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607344" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116155" stop="116197"/>
              <exon start="116428" stop="116652"/>
              <exon start="117152" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117405" stop="117470"/>
              <exon start="117599" stop="117860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117447" stop="117470"/>
              <exon start="117599" stop="117860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATATGACCGGGAAATAGGAAGGGGGGTATTATTGTGCCAAAAATGGATTGCAATGAAAGAAGTTGATTTGTGTGAAAG : GAATCACATACAAGGGTATCCCTCCATTCGCATCTTCAGAAAAGGAACTGATGTTAG : AGACGATCACGGACACCATGATCACGAGTCATACTATGGGGATCGTGATACAGATAGCTTAGTCAAG : ATGATGGAAGATTTGGTTGCACCTATCAAGCTGGATTCTCAAACGATTACTTCAGATAATTCGTCTACCAAGCTGGAAACTGGCTTGAAAAGACCTGCTCCTGTAACTGGAGGATGCAGAATAGAAGGTTTTGTACGTGTTAAGAAG : GTTCCTGGCAACCTTGTCATATCAGCTCGTTCAGCTGCTCATTCATTTGATGCTTCTCAGATGAACATGTCACATGTAATTTCTAGCTTTTCATTTGGTAAGACAATTACTCCGAAGGTTATGAGTGATATCAAAATACTGCTACCACATTTGGGTCGAAGCCATGATAGGTTGAATGGTAACTCATATGTTACTAATCCAAGAGATTCCACAGAAAATGTTACT : ATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTATGAGCCATCACCAATGCAG : GTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACG : GTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTCGTTTACAGCAAGTCTTGAAAACATTTTTCTTGCATCAAGAGTTCTGGTGATCTGCACCAAATATATTAGTAAATTTCTCGTGCAGGCGCTTTAATTTGTGGA</gDNA_template>
            <first_frame> D  M  T  G  K  *  E  G  G  Y  Y  C  A  K  N  G  L  Q  *  K  K  L  I  C  V  K   : G  I  T  Y  K  G  I  P  P  F  A  S  S  E  K  E  L  M  L   : E  T  I  T  D  T  M  I  T  S  H  T  M  G  I  V  I  Q  I  A  *  S  R :   *  W  K  I  W  L  H  L  S  S  W  I  L  K  R  L  L  Q  I  I  R  L  P  S  W  K  L  A  *  K  D  L  L  L  *  L  E  D  A  E  *  K  V  L  Y  V  L  R  R :   F  L  A  T  L  S  Y  Q  L  V  Q  L  L  I  H  L  M  L  L  R  *  T  C  H  M  *  F  L  A  F  H  L  V  R  Q  L  L  R  R  L  *  V  I  S  K  Y  C  Y  H  I  W  V  E  A  M  I  G  *  M  V  T  H  M  L  L  I  Q  E  I  P  Q  K  M  L  L :   L  N  I  F  F  K  W  *  K  Q  R  *  *  Q  D  R  T  N  *  L  R  S  T  S  T  R  H  I  V  V  W  F  I  V  F  T  Y  Q  *  R  N  F  I  M  S  H  H  Q  C  R :   S  *  L  Q  K  I  P  S  P  F  H  I  F  L  P  M  S  A  L  L  L  V  V  F  S  R :   L  P  A  Y  W  T  R  F  C  T  T  Q  *  E  W  *  K  K  L  S  *  E  R  I  F  E  E  S  S  L  M  I  E  I  *  F  V  H  Y  N  Y  T  L  *  N  Y  T  I  L  D  I  L  F  V  Y  S  K  S  *  K  H  F  S  C  I  K  S  S  G  D  L  H  Q  I  Y  *  *  I  S  R  A  G  A  L  I  C  G </first_frame>
            <second_frame>  I  *  P  G  N  R  K  G  G  I  I  V  P  K  M  D  C  N  E  R  S  *  F  V  *  K  :  E  S  H  T  R  V  S  L  H  S  H  L  Q  K  R  N  *  C  *  :  R  R  S  R  T  P  *  S  R  V  I  L  W  G  S  *  Y  R  *  L  S  Q   : D  D  G  R  F  G  C  T  Y  Q  A  G  F  S  N  D  Y  F  R  *  F  V  Y  Q  A  G  N  W  L  E  K  T  C  S  C  N  W  R  M  Q  N  R  R  F  C  T  C  *  E   : G  S  W  Q  P  C  H  I  S  S  F  S  C  S  F  I  *  C  F  S  D  E  H  V  T  C  N  F  *  L  F  I  W  *  D  N  Y  S  E  G  Y  E  *  Y  Q  N  T  A  T  T  F  G  S  K  P  *  *  V  E  W  *  L  I  C  Y  *  S  K  R  F  H  R  K  C  Y   : Y  *  T  F  S  S  S  G  E  N  R  G  D  D  K  I  V  Q  I  S  *  G  V  R  V  H  G  T  *  *  F  G  S  *  S  S  H  T  S  S  E  I  S  L  *  A  I  T  N  A   : G  L  D  Y  R  K  S  Q  V  L  F  T  F  S  Y  Q  C  L  R  Y  Y  W  W  C  F  H   : G  C  R  H  T  G  L  D  S  A  Q  H  N  E  N  G  E  K  S  *  A  R  K  E  F  L  R  R  V  V  *  *  *  K  F  S  L  C  T  I  I  I  R  F  K  I  I  L  Y  *  I  F  S  S  F  T  A  S  L  E  N  I  F  L  A  S  R  V  L  V  I  C  T  K  Y  I  S  K  F  L  V  Q  A  L  *  F  V   </second_frame>
            <third_frame>   Y  D  R  E  I  G  R  G  V  L  L  C  Q  K  W  I  A  M  K  E  V  D  L  C  E  R :   N  H  I  Q  G  Y  P  S  I  R  I  F  R  K  G  T  D  V  R :   D  D  H  G  H  H  D  H  E  S  Y  Y  G  D  R  D  T  D  S  L  V  K  :  M  M  E  D  L  V  A  P  I  K  L  D  S  Q  T  I  T  S  D  N  S  S  T  K  L  E  T  G  L  K  R  P  A  P  V  T  G  G  C  R  I  E  G  F  V  R  V  K  K  :  V  P  G  N  L  V  I  S  A  R  S  A  A  H  S  F  D  A  S  Q  M  N  M  S  H  V  I  S  S  F  S  F  G  K  T  I  T  P  K  V  M  S  D  I  K  I  L  L  P  H  L  G  R  S  H  D  R  L  N  G  N  S  Y  V  T  N  P  R  D  S  T  E  N  V  T  :  I  E  H  F  L  Q  V  V  K  T  E  V  M  T  R  S  Y  K  L  V  E  E  Y  E  Y  T  A  H  S  S  L  V  H  S  L  H  I  P  V  A  K  F  H  Y  E  P  S  P  M  Q  :  V  L  I  T  E  N  P  K  S  F  S  H  F  L  T  N  V  C  A  I  I  G  G  V  F  T  :  V  A  G  I  L  D  S  I  L  H  N  T  M  R  M  V  K  K  V  E  L  G  K  N  F  *  G  E  *  S  D  D  R  N  L  V  C  A  L  *  L  Y  A  L  K  L  Y  Y  I  R  Y  S  L  R  L  Q  Q  V  L  K  T  F  F  L  H  Q  E  F  W  *  S  A  P  N  I  L  V  N  F  S  C  R  R  F  N  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114236" stop="114312"/>
                    <exon start="114974" stop="115030"/>
                    <exon start="115743" stop="115809"/>
                    <exon start="116051" stop="116197"/>
                    <exon start="116428" stop="116652"/>
                    <exon start="117152" stop="117301"/>
                    <exon start="117393" stop="117470"/>
                    <exon start="117599" stop="117676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDREIGRGVLLCQKWIAMKEVDLCERNHIQGYPSIRIFRKGTDVRDDHGHHDHESYYGDRDTDSLVKMMEDLVAPIKLDSQTITSDNSSTKLETGLKRPAPVTGGCRIEGFVRVKKVPGNLVISARSAAHSFDASQMNMSHVISSFSFGKTITPKVMSDIKILLPHLGRSHDRLNGNSYVTNPRDSTENVTIEHFLQVVKTEVMTRSYKLVEEYEYTAHSSLVHSLHIPVAKFHYEPSPMQVLITENPKSFSHFLTNVCAIIGGVFTVAGILDSILHNTMRMVKKVELGKNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="117138" e_stop="117301"/>
            <exon e_start="117393" e_stop="117470"/>
            <exon e_start="117599" e_stop="117860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.884" acc_prob="0.961" e_score="0.945"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="117138" e_stop="117301" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.884" acc_prob="0.961">
            <gDNA_intron_boundary i_start="117302" i_stop="117392" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117393" e_stop="117470" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117471" i_stop="117598" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117599" e_stop="117860" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117138" stop="117301"/>
              <exon start="117393" stop="117470"/>
              <exon start="117599" stop="117758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117405" stop="117470"/>
              <exon start="117599" stop="117860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117447" stop="117470"/>
              <exon start="117599" stop="117860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTTTATTGCAGATTGAACATTTTCTTCAAGTGGTGAAAACAGAGGTGATGACAAGATCGTACAAATTAGTTGAGGAGTACGAGTACACGGCACATAGTAGTTTGGTTCATAGTCTTCACATACCAGTAGCGAAATTTCATTATGAGCCATCACCAATGCAG : GTCTTGATTACAGAAAATCCCAAGTCCTTTTCACATTTTCTTACCAATGTCTGCGCTATTATTGGTGGTGTTTTCACG : GTTGCCGGCATACTGGACTCGATTCTGCACAACACAATGAGAATGGTGAAAAAAGTTGAGCTAGGAAAGAATTTTTGAGGAGAGTAGTCTGATGATAGAAATTTAGTTTGTGCACTATAATTATACGCTTTAAAATTATACTATATTAGATATTCTCTTCGTTTACAGCAAGTCTTGAAAACATTTTTCTTGCATCAAGAGTTCTGGTGATCTGCACCAAATATATTAGTAAATTTCTCGTGCAGGCGCTTTAATTTGTGGA</gDNA_template>
            <first_frame> Y  L  Y  C  R  L  N  I  F  F  K  W  *  K  Q  R  *  *  Q  D  R  T  N  *  L  R  S  T  S  T  R  H  I  V  V  W  F  I  V  F  T  Y  Q  *  R  N  F  I  M  S  H  H  Q  C  R :   S  *  L  Q  K  I  P  S  P  F  H  I  F  L  P  M  S  A  L  L  L  V  V  F  S  R :   L  P  A  Y  W  T  R  F  C  T  T  Q  *  E  W  *  K  K  L  S  *  E  R  I  F  E  E  S  S  L  M  I  E  I  *  F  V  H  Y  N  Y  T  L  *  N  Y  T  I  L  D  I  L  F  V  Y  S  K  S  *  K  H  F  S  C  I  K  S  S  G  D  L  H  Q  I  Y  *  *  I  S  R  A  G  A  L  I  C  G </first_frame>
            <second_frame>  I  F  I  A  D  *  T  F  S  S  S  G  E  N  R  G  D  D  K  I  V  Q  I  S  *  G  V  R  V  H  G  T  *  *  F  G  S  *  S  S  H  T  S  S  E  I  S  L  *  A  I  T  N  A   : G  L  D  Y  R  K  S  Q  V  L  F  T  F  S  Y  Q  C  L  R  Y  Y  W  W  C  F  H   : G  C  R  H  T  G  L  D  S  A  Q  H  N  E  N  G  E  K  S  *  A  R  K  E  F  L  R  R  V  V  *  *  *  K  F  S  L  C  T  I  I  I  R  F  K  I  I  L  Y  *  I  F  S  S  F  T  A  S  L  E  N  I  F  L  A  S  R  V  L  V  I  C  T  K  Y  I  S  K  F  L  V  Q  A  L  *  F  V   </second_frame>
            <third_frame>   S  L  L  Q  I  E  H  F  L  Q  V  V  K  T  E  V  M  T  R  S  Y  K  L  V  E  E  Y  E  Y  T  A  H  S  S  L  V  H  S  L  H  I  P  V  A  K  F  H  Y  E  P  S  P  M  Q  :  V  L  I  T  E  N  P  K  S  F  S  H  F  L  T  N  V  C  A  I  I  G  G  V  F  T  :  V  A  G  I  L  D  S  I  L  H  N  T  M  R  M  V  K  K  V  E  L  G  K  N  F  *  G  E  *  S  D  D  R  N  L  V  C  A  L  *  L  Y  A  L  K  L  Y  Y  I  R  Y  S  L  R  L  Q  Q  V  L  K  T  F  F  L  H  Q  E  F  W  *  S  A  P  N  I  L  V  N  F  S  C  R  R  F  N  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117140" stop="117301"/>
                    <exon start="117393" stop="117470"/>
                    <exon start="117599" stop="117676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLQIEHFLQVVKTEVMTRSYKLVEEYEYTAHSSLVHSLHIPVAKFHYEPSPMQVLITENPKSFSHFLTNVCAIIGGVFTVAGILDSILHNTMRMVKKVELGKNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="120916" PGL_stop="119496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120916" e_stop="120630"/>
            <exon e_start="120122" e_stop="119496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.799" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120916" e_stop="120630" e_length="287"/>
          </exon>
          <intron i_serial="1" don_prob="0.799" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120629" i_stop="120123" i_length="507"/>
          </intron>
          <exon e_serial="2" e_score="0.933">
            <gDNA_exon_boundary e_start="120122" e_stop="119496" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120916" stop="120630"/>
              <exon start="120122" stop="119894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120899" stop="120630"/>
              <exon start="120122" stop="119672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120898" stop="120630"/>
              <exon start="120122" stop="119892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120892" stop="120630"/>
              <exon start="120122" stop="119747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120878" stop="120630"/>
              <exon start="120122" stop="119657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120078" stop="119496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTATTTCAATTTTCATCTAACATTTATTTAATTTTATTCTTTGTCTTCATTATTTTATTTTATTTTATTTTTTCCCCAATGGCTCAAATAACAAGTTCAAGATCAAATACAAAAGTTTTTTATTTTTTGGGCTTGTTCAATATTTTGTTGATGTTACAAAATGCCAACTGTTATGAGTTTAAAGTTGGAGGCTCTGGAGATTGGAGTGTCCCTATGGATGCCAATGCTAATAATTACAATCAATGGGCTGAAAGGAGTAGATTCCAAATTGGTGACACTTTAT : CTTTTAGCTACTCTGCTGATAAAGACTCAGTGCTTCTTGTAAACAAGGCAGATTTTGACAATTGCAACACTGCTTCTCCCATTGAGAAGTACAGTGATGGACAGAGTGTGGTTAAGTTTAACCACTCTGGTGCATACTTCTTCATTAGTGGTGTTCATGACAACTGTGTCAAGAATGAAAAGTTGCATCTTGTAGTCATGGCTGATAGAAGTCACAACAACCAAACAGCTTCTTCTCCTCCTCCATCCCCATCAGTAGACGAAGTTCCTCCGTCTCCGGCCCCGTCTGGTGAGGAGGCACCATCACCACCATCTGACTCAGGTGAGACCAACCAAACACCAGCTCCCTCTCAAGAATCATCTCCTCCGAAGAATGGTGCTTCGTCGACCGTTATGAGCTTTGTTGGCTCTGCTGCAGCTCTTGTTGGTTCATCCATACTGTTGGGGTTCTGATAAAAGAGATGATTGACTTGTTTGTATTTGTTTTGTTTTGATTGTTTTCATTTTTTGGGTTTTGTGTTTCATGATTTTCCTACTTTGTTCTCAGTGAATGTAGCTGAGAGTAAAAGGGTGTATTGATTTGTATTGGTTATATGTGATGAAAAATAAATAAACTAAATGTTTGTGT</gDNA_template>
            <first_frame> F  S  I  S  I  F  I  *  H  L  F  N  F  I  L  C  L  H  Y  F  I  L  F  Y  F  F  P  N  G  S  N  N  K  F  K  I  K  Y  K  S  F  L  F  F  G  L  V  Q  Y  F  V  D  V  T  K  C  Q  L  L  *  V  *  S  W  R  L  W  R  L  E  C  P  Y  G  C  Q  C  *  *  L  Q  S  M  G  *  K  E  *  I  P  N  W  *  H  F  I :   F  *  L  L  C  *  *  R  L  S  A  S  C  K  Q  G  R  F  *  Q  L  Q  H  C  F  S  H  *  E  V  Q  *  W  T  E  C  G  *  V  *  P  L  W  C  I  L  L  H  *  W  C  S  *  Q  L  C  Q  E  *  K  V  A  S  C  S  H  G  *  *  K  S  Q  Q  P  N  S  F  F  S  S  S  I  P  I  S  R  R  S  S  S  V  S  G  P  V  W  *  G  G  T  I  T  T  I  *  L  R  *  D  Q  P  N  T  S  S  L  S  R  I  I  S  S  E  E  W  C  F  V  D  R  Y  E  L  C  W  L  C  C  S  S  C  W  F  I  H  T  V  G  V  L  I  K  E  M  I  D  L  F  V  F  V  L  F  *  L  F  S  F  F  G  F  C  V  S  *  F  S  Y  F  V  L  S  E  C  S  *  E  *  K  G  V  L  I  C  I  G  Y  M  *  *  K  I  N  K  L  N  V  C   </first_frame>
            <second_frame>  F  L  F  Q  F  S  S  N  I  Y  L  I  L  F  F  V  F  I  I  L  F  Y  F  I  F  S  P  M  A  Q  I  T  S  S  R  S  N  T  K  V  F  Y  F  L  G  L  F  N  I  L  L  M  L  Q  N  A  N  C  Y  E  F  K  V  G  G  S  G  D  W  S  V  P  M  D  A  N  A  N  N  Y  N  Q  W  A  E  R  S  R  F  Q  I  G  D  T  L   : S  F  S  Y  S  A  D  K  D  S  V  L  L  V  N  K  A  D  F  D  N  C  N  T  A  S  P  I  E  K  Y  S  D  G  Q  S  V  V  K  F  N  H  S  G  A  Y  F  F  I  S  G  V  H  D  N  C  V  K  N  E  K  L  H  L  V  V  M  A  D  R  S  H  N  N  Q  T  A  S  S  P  P  P  S  P  S  V  D  E  V  P  P  S  P  A  P  S  G  E  E  A  P  S  P  P  S  D  S  G  E  T  N  Q  T  P  A  P  S  Q  E  S  S  P  P  K  N  G  A  S  S  T  V  M  S  F  V  G  S  A  A  A  L  V  G  S  S  I  L  L  G  F  *  *  K  R  *  L  T  C  L  Y  L  F  C  F  D  C  F  H  F  L  G  F  V  F  H  D  F  P  T  L  F  S  V  N  V  A  E  S  K  R  V  Y  *  F  V  L  V  I  C  D  E  K  *  I  N  *  M  F  V  </second_frame>
            <third_frame>   F  Y  F  N  F  H  L  T  F  I  *  F  Y  S  L  S  S  L  F  Y  F  I  L  F  F  P  Q  W  L  K  *  Q  V  Q  D  Q  I  Q  K  F  F  I  F  W  A  C  S  I  F  C  *  C  Y  K  M  P  T  V  M  S  L  K  L  E  A  L  E  I  G  V  S  L  W  M  P  M  L  I  I  T  I  N  G  L  K  G  V  D  S  K  L  V  T  L  Y  :  L  L  A  T  L  L  I  K  T  Q  C  F  L  *  T  R  Q  I  L  T  I  A  T  L  L  L  P  L  R  S  T  V  M  D  R  V  W  L  S  L  T  T  L  V  H  T  S  S  L  V  V  F  M  T  T  V  S  R  M  K  S  C  I  L  *  S  W  L  I  E  V  T  T  T  K  Q  L  L  L  L  L  H  P  H  Q  *  T  K  F  L  R  L  R  P  R  L  V  R  R  H  H  H  H  H  L  T  Q  V  R  P  T  K  H  Q  L  P  L  K  N  H  L  L  R  R  M  V  L  R  R  P  L  *  A  L  L  A  L  L  Q  L  L  L  V  H  P  Y  C  W  G  S  D  K  R  D  D  *  L  V  C  I  C  F  V  L  I  V  F  I  F  W  V  L  C  F  M  I  F  L  L  C  S  Q  *  M  *  L  R  V  K  G  C  I  D  L  Y  W  L  Y  V  M  K  N  K  *  T  K  C  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120915" stop="120630"/>
                    <exon start="120122" stop="119671"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLFQFSSNIYLILFFVFIILFYFIFSPMAQITSSRSNTKVFYFLGLFNILLMLQNANCYEFKVGGSGDWSVPMDANANNYNQWAERSRFQIGDTLSFSYSADKDSVLLVNKADFDNCNTASPIEKYSDGQSVVKFNHSGAYFFISGVHDNCVKNEKLHLVVMADRSHNNQTASSPPPSPSVDEVPPSPAPSGEEAPSPPSDSGETNQTPAPSQESSPPKNGASSTVMSFVGSAAALVGSSILLGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="122354" PGL_stop="125194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122354" e_stop="122754"/>
            <exon e_start="124132" e_stop="124227"/>
            <exon e_start="124440" e_stop="124543"/>
            <exon e_start="125049" e_stop="125194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.983"/>
          <exon-intron don_prob="0.988" acc_prob="0.039" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.988"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="122354" e_stop="122754" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122755" i_stop="124131" i_length="1377"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="124132" e_stop="124227" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.039">
            <gDNA_intron_boundary i_start="124228" i_stop="124439" i_length="212"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="124440" e_stop="124543" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="124544" i_stop="125048" i_length="505"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="125049" e_stop="125194" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122354" stop="122754"/>
              <exon start="124132" stop="124227"/>
              <exon start="124440" stop="124543"/>
              <exon start="125049" stop="125194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122355" stop="122754"/>
              <exon start="124132" stop="124227"/>
              <exon start="124440" stop="124488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122372" stop="122754"/>
              <exon start="124132" stop="124227"/>
              <exon start="124440" stop="124523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122403" stop="122754"/>
              <exon start="124132" stop="124227"/>
              <exon start="124440" stop="124521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCGTTAGCTCTGACTGTGAAATTGTCACCACCAGAATACTCAAAACTGTAAAACACCATTCTTACCCAAAAAAAGAAAAAGAAAGTTTAGCTAAGTATTTGGCAATTAGGAAAAAGATCAAATTTTTATGTTGATTATAATGTGTTTCTTGAATTTCTGTCAAATGGGTAGCTAGAAAAACAAGTTTTATGATCTGGGGTTGTCTCATTTTTGTTTTTCTTGTTGAAAATCTGATCTGGGTTCTTGAGCTGCAGCTGTTGGGTTTCCAAGATTGTTTTTTTTTTTGTTTGGTTTGAGGAGTTTTCAAGAATGTGGAGGGACCCTGGAGCTCCTGCTGATTCTTTCTACCAGGTTCGCCCTGAATGTACAAATGTTCCAAAAACAAGATTTAGAATCAAG : GCTGGGAAAACCTTAAGTGCAAGGAAATGGCGTGCTGCATTTACATCAGAAGGTTATCTTGACATTGGCAAAACACTGAGTCGAATTTATCGTGGG : GGGATTCATCCATCAATTAGAGGTGAAGTTTGGGAATTTTTATTGGGTTGTTATGATCCAAAGAGCACATTTGAAGAACGAGAGCAGATACGACAACGGAGGAG : GGTCCAGTATGCTGTACTGAAAGAAGAATGTCACGCAATGTTTCCCATGATTGGAAGTGGTAGTTTTATTACTGCACCTGTAATTACTGAAAATGGTGACCCTATAGTAGATCCTATTACTCTCCAAGAGGCACAAGCAGCAAAAG</gDNA_template>
            <first_frame> P  R  *  L  *  L  *  N  C  H  H  Q  N  T  Q  N  C  K  T  P  F  L  P  K  K  R  K  R  K  F  S  *  V  F  G  N  *  E  K  D  Q  I  F  M  L  I  I  M  C  F  L  N  F  C  Q  M  G  S  *  K  N  K  F  Y  D  L  G  L  S  H  F  C  F  S  C  *  K  S  D  L  G  S  *  A  A  A  V  G  F  P  R  L  F  F  F  L  F  G  L  R  S  F  Q  E  C  G  G  T  L  E  L  L  L  I  L  S  T  R  F  A  L  N  V  Q  M  F  Q  K  Q  D  L  E  S  R :   L  G  K  P  *  V  Q  G  N  G  V  L  H  L  H  Q  K  V  I  L  T  L  A  K  H  *  V  E  F  I  V  G :   G  F  I  H  Q  L  E  V  K  F  G  N  F  Y  W  V  V  M  I  Q  R  A  H  L  K  N  E  S  R  Y  D  N  G  G   : G  S  S  M  L  Y  *  K  K  N  V  T  Q  C  F  P  *  L  E  V  V  V  L  L  L  H  L  *  L  L  K  M  V  T  L  *  *  I  L  L  L  S  K  R  H  K  Q  Q  K </first_frame>
            <second_frame>  L  V  S  S  D  C  E  I  V  T  T  R  I  L  K  T  V  K  H  H  S  Y  P  K  K  E  K  E  S  L  A  K  Y  L  A  I  R  K  K  I  K  F  L  C  *  L  *  C  V  S  *  I  S  V  K  W  V  A  R  K  T  S  F  M  I  W  G  C  L  I  F  V  F  L  V  E  N  L  I  W  V  L  E  L  Q  L  L  G  F  Q  D  C  F  F  F  C  L  V  *  G  V  F  K  N  V  E  G  P  W  S  S  C  *  F  F  L  P  G  S  P  *  M  Y  K  C  S  K  N  K  I  *  N  Q   : G  W  E  N  L  K  C  K  E  M  A  C  C  I  Y  I  R  R  L  S  *  H  W  Q  N  T  E  S  N  L  S  W   : G  D  S  S  I  N  *  R  *  S  L  G  I  F  I  G  L  L  *  S  K  E  H  I  *  R  T  R  A  D  T  T  T  E  E  :  G  P  V  C  C  T  E  R  R  M  S  R  N  V  S  H  D  W  K  W  *  F  Y  Y  C  T  C  N  Y  *  K  W  *  P  Y  S  R  S  Y  Y  S  P  R  G  T  S  S  K   </second_frame>
            <third_frame>   S  L  A  L  T  V  K  L  S  P  P  E  Y  S  K  L  *  N  T  I  L  T  Q  K  K  K  K  K  V  *  L  S  I  W  Q  L  G  K  R  S  N  F  Y  V  D  Y  N  V  F  L  E  F  L  S  N  G  *  L  E  K  Q  V  L  *  S  G  V  V  S  F  L  F  F  L  L  K  I  *  S  G  F  L  S  C  S  C  W  V  S  K  I  V  F  F  F  V  W  F  E  E  F  S  R  M  W  R  D  P  G  A  P  A  D  S  F  Y  Q  V  R  P  E  C  T  N  V  P  K  T  R  F  R  I  K  :  A  G  K  T  L  S  A  R  K  W  R  A  A  F  T  S  E  G  Y  L  D  I  G  K  T  L  S  R  I  Y  R  G  :  G  I  H  P  S  I  R  G  E  V  W  E  F  L  L  G  C  Y  D  P  K  S  T  F  E  E  R  E  Q  I  R  Q  R  R  R :   V  Q  Y  A  V  L  K  E  E  C  H  A  M  F  P  M  I  G  S  G  S  F  I  T  A  P  V  I  T  E  N  G  D  P  I  V  D  P  I  T  L  Q  E  A  Q  A  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122590" stop="122754"/>
                    <exon start="124132" stop="124227"/>
                    <exon start="124440" stop="124543"/>
                    <exon start="125049" stop="125193"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGFLSCSCWVSKIVFFFVWFEEFSRMWRDPGAPADSFYQVRPECTNVPKTRFRIKAGKTLSARKWRAAFTSEGYLDIGKTLSRIYRGGIHPSIRGEVWEFLLGCYDPKSTFEEREQIRQRRRVQYAVLKEECHAMFPMIGSGSFITAPVITENGDPIVDPITLQEAQAAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="126594" PGL_stop="127784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126594" e_stop="126661"/>
            <exon e_start="126749" e_stop="126846"/>
            <exon e_start="126916" e_stop="127176"/>
            <exon e_start="127267" e_stop="127350"/>
            <exon e_start="127537" e_stop="127784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.979" e_score="0.941"/>
          <exon-intron don_prob="0.990" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.847" acc_prob="0.983" e_score="0.985"/>
          <exon-intron don_prob="0.969" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="126594" e_stop="126661" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.979">
            <gDNA_intron_boundary i_start="126662" i_stop="126748" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126749" e_stop="126846" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.960">
            <gDNA_intron_boundary i_start="126847" i_stop="126915" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="126916" e_stop="127176" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.847" acc_prob="0.983">
            <gDNA_intron_boundary i_start="127177" i_stop="127266" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="127267" e_stop="127350" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.997">
            <gDNA_intron_boundary i_start="127351" i_stop="127536" i_length="186"/>
          </intron>
          <exon e_serial="5" e_score="0.956">
            <gDNA_exon_boundary e_start="127537" e_stop="127784" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126594" stop="126661"/>
              <exon start="126749" stop="126846"/>
              <exon start="126916" stop="127176"/>
              <exon start="127267" stop="127350"/>
              <exon start="127537" stop="127784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546425" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGCTCAGCTGAGTAATCTTGCTTCAGTAACACAAGTTATTGACCCTAAACTTCATCACCACTTAG : AGACATTAGGTGGAGGTGATTACCTATTTGCTATCCGTATGCTCATGGTTTTGTTCCGTCGAGAATTCTCTTTTGCTGATTCATTATATCTTTGGGAG : ATGATGTGGGCGTTGGAATACGATCCCGACTTGTTTCTTATGTATGAAGACCCTGACTTAGCTGCTGCAAAATCTGAAGGATCTAAAGGAAGAGCAAAATCAACACGCCAGTGTGGGAAATTTGAGAGAGAAAATCTGAAAAATCGAAGCAAAGGTACTGAAGCTCCACTCCCAATTTCCGTTTTCCTAGTAGCCAGTGTCCTCAAGGACAAGAGCACAAAGTTGCTTACAGAAGCTAAAGGACTAGACGACGTTGTTCAG : ATACTGAATGACATGACTGGAAACCTGGACGCGAAGAAGGCTTGCACTAGTGCAATGAAACTTCACAAGAAATATCTCAAAAAG : GCAGCCAATGCCAACAGGTAACAAAACACAAAAGCCAAAGAAAGCGCGTTACGCAATTCATAAGCCATGAAGGTAATGTAAAAATGAAGCTTGTGATGGTACTTCCCCTGTTCAACGTTGCAACAGTGTTGCTACAGGGTAAGAATCCTATCGCGATTTTCGATATTTGATTCAGGTATTTTTGGTTATGTTGAGGAAGAGGTACTGTTTTCGAATACATTACTATGGCTTGATTTATTGAAGCCAAT</gDNA_template>
            <first_frame> R  S  S  A  E  *  S  C  F  S  N  T  S  Y  *  P  *  T  S  S  P  L  R :   D  I  R  W  R  *  L  P  I  C  Y  P  Y  A  H  G  F  V  P  S  R  I  L  F  C  *  F  I  I  S  L  G   : D  D  V  G  V  G  I  R  S  R  L  V  S  Y  V  *  R  P  *  L  S  C  C  K  I  *  R  I  *  R  K  S  K  I  N  T  P  V  W  E  I  *  E  R  K  S  E  K  S  K  Q  R  Y  *  S  S  T  P  N  F  R  F  P  S  S  Q  C  P  Q  G  Q  E  H  K  V  A  Y  R  S  *  R  T  R  R  R  C  S   : D  T  E  *  H  D  W  K  P  G  R  E  E  G  L  H  *  C  N  E  T  S  Q  E  I  S  Q  K   : G  S  Q  C  Q  Q  V  T  K  H  K  S  Q  R  K  R  V  T  Q  F  I  S  H  E  G  N  V  K  M  K  L  V  M  V  L  P  L  F  N  V  A  T  V  L  L  Q  G  K  N  P  I  A  I  F  D  I  *  F  R  Y  F  W  L  C  *  G  R  G  T  V  F  E  Y  I  T  M  A  *  F  I  E  A  N </first_frame>
            <second_frame>  E  A  Q  L  S  N  L  A  S  V  T  Q  V  I  D  P  K  L  H  H  H  L   : E  T  L  G  G  G  D  Y  L  F  A  I  R  M  L  M  V  L  F  R  R  E  F  S  F  A  D  S  L  Y  L  W  E  :  M  M  W  A  L  E  Y  D  P  D  L  F  L  M  Y  E  D  P  D  L  A  A  A  K  S  E  G  S  K  G  R  A  K  S  T  R  Q  C  G  K  F  E  R  E  N  L  K  N  R  S  K  G  T  E  A  P  L  P  I  S  V  F  L  V  A  S  V  L  K  D  K  S  T  K  L  L  T  E  A  K  G  L  D  D  V  V  Q  :  I  L  N  D  M  T  G  N  L  D  A  K  K  A  C  T  S  A  M  K  L  H  K  K  Y  L  K  K  :  A  A  N  A  N  R  *  Q  N  T  K  A  K  E  S  A  L  R  N  S  *  A  M  K  V  M  *  K  *  S  L  *  W  Y  F  P  C  S  T  L  Q  Q  C  C  Y  R  V  R  I  L  S  R  F  S  I  F  D  S  G  I  F  G  Y  V  E  E  E  V  L  F  S  N  T  L  L  W  L  D  L  L  K  P   </second_frame>
            <third_frame>   K  L  S  *  V  I  L  L  Q  *  H  K  L  L  T  L  N  F  I  T  T  *  :  R  H  *  V  E  V  I  T  Y  L  L  S  V  C  S  W  F  C  S  V  E  N  S  L  L  L  I  H  Y  I  F  G  R :   *  C  G  R  W  N  T  I  P  T  C  F  L  C  M  K  T  L  T  *  L  L  Q  N  L  K  D  L  K  E  E  Q  N  Q  H  A  S  V  G  N  L  R  E  K  I  *  K  I  E  A  K  V  L  K  L  H  S  Q  F  P  F  S  *  *  P  V  S  S  R  T  R  A  Q  S  C  L  Q  K  L  K  D  *  T  T  L  F  R :   Y  *  M  T  *  L  E  T  W  T  R  R  R  L  A  L  V  Q  *  N  F  T  R  N  I  S  K  R :   Q  P  M  P  T  G  N  K  T  Q  K  P  K  K  A  R  Y  A  I  H  K  P  *  R  *  C  K  N  E  A  C  D  G  T  S  P  V  Q  R  C  N  S  V  A  T  G  *  E  S  Y  R  D  F  R  Y  L  I  Q  V  F  L  V  M  L  R  K  R  Y  C  F  R  I  H  Y  Y  G  L  I  Y  *  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126595" stop="126661"/>
                    <exon start="126749" stop="126846"/>
                    <exon start="126916" stop="127176"/>
                    <exon start="127267" stop="127350"/>
                    <exon start="127537" stop="127557"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAQLSNLASVTQVIDPKLHHHLETLGGGDYLFAIRMLMVLFRREFSFADSLYLWEMMWALEYDPDLFLMYEDPDLAAAKSEGSKGRAKSTRQCGKFERENLKNRSKGTEAPLPISVFLVASVLKDKSTKLLTEAKGLDDVVQILNDMTGNLDAKKACTSAMKLHKKYLKKAANANR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="134940" PGL_stop="133960"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134940" e_stop="134741"/>
            <exon e_start="134371" e_stop="133960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134940" e_stop="134741" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="134740" i_stop="134372" i_length="369"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="134371" e_stop="133960" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134940" stop="134741"/>
              <exon start="134371" stop="133960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134839" stop="134741"/>
              <exon start="134371" stop="133960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719952" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCACAAACACTTGCAAATTGCAATTAATTACCAAAAGTAATTAGCCATGGGGAATATTTCACTTGTTGCTGCTCTTTTATTGTGCTTGTTAGCATTCGCAAATGCTAACACGTTCTCCGTTACAGTATCTGTGACGGAGAACGACAATCCACAAAGCTGTCAAGAGCAGATTCAGAGTCAGAGACTCAATCACTGCAG : GATGTATATTTCAAGAAGCCACCAATACTTTAACGACGAGTTGAGCATGGTAACAGATGACGATCATGAGATCAACCAAACCCAAGAACATCTCCAACAATGTTGCCAAGAATTGAGGAACATGGACACTCAATGCCGATGCCCGGCGCTTAAGAAAATGGTGATGCAGGATTGCGGTAGACAAGGCGAAGAGGCGCAACGTATGTTAGGGAAAGCTCGTTATATTCCGCGTATGTGTAACATTCAACCCGCTCAATGTAGCTTCTAATTGATATAGAAGCTCGATCAGTATAAAAAATTACGTTGAAAGTACTATAATAATGAACACACAATCGTGTGTATGTATGGGAATTAAGCAAGGGTTAATTTGGTTTTATCTTATGGGAAATGAAAGAGACTTGAGACTTGTTTT</gDNA_template>
            <first_frame> H  H  K  H  L  Q  I  A  I  N  Y  Q  K  *  L  A  M  G  N  I  S  L  V  A  A  L  L  L  C  L  L  A  F  A  N  A  N  T  F  S  V  T  V  S  V  T  E  N  D  N  P  Q  S  C  Q  E  Q  I  Q  S  Q  R  L  N  H  C  R :   M  Y  I  S  R  S  H  Q  Y  F  N  D  E  L  S  M  V  T  D  D  D  H  E  I  N  Q  T  Q  E  H  L  Q  Q  C  C  Q  E  L  R  N  M  D  T  Q  C  R  C  P  A  L  K  K  M  V  M  Q  D  C  G  R  Q  G  E  E  A  Q  R  M  L  G  K  A  R  Y  I  P  R  M  C  N  I  Q  P  A  Q  C  S  F  *  L  I  *  K  L  D  Q  Y  K  K  L  R  *  K  Y  Y  N  N  E  H  T  I  V  C  M  Y  G  N  *  A  R  V  N  L  V  L  S  Y  G  K  *  K  R  L  E  T  C  F </first_frame>
            <second_frame>  I  T  N  T  C  K  L  Q  L  I  T  K  S  N  *  P  W  G  I  F  H  L  L  L  L  F  Y  C  A  C  *  H  S  Q  M  L  T  R  S  P  L  Q  Y  L  *  R  R  T  T  I  H  K  A  V  K  S  R  F  R  V  R  D  S  I  T  A   : G  C  I  F  Q  E  A  T  N  T  L  T  T  S  *  A  W  *  Q  M  T  I  M  R  S  T  K  P  K  N  I  S  N  N  V  A  K  N  *  G  T  W  T  L  N  A  D  A  R  R  L  R  K  W  *  C  R  I  A  V  D  K  A  K  R  R  N  V  C  *  G  K  L  V  I  F  R  V  C  V  T  F  N  P  L  N  V  A  S  N  *  Y  R  S  S  I  S  I  K  N  Y  V  E  S  T  I  I  M  N  T  Q  S  C  V  C  M  G  I  K  Q  G  L  I  W  F  Y  L  M  G  N  E  R  D  L  R  L  V   </second_frame>
            <third_frame>   S  Q  T  L  A  N  C  N  *  L  P  K  V  I  S  H  G  E  Y  F  T  C  C  C  S  F  I  V  L  V  S  I  R  K  C  *  H  V  L  R  Y  S  I  C  D  G  E  R  Q  S  T  K  L  S  R  A  D  S  E  S  E  T  Q  S  L  Q  :  D  V  Y  F  K  K  P  P  I  L  *  R  R  V  E  H  G  N  R  *  R  S  *  D  Q  P  N  P  R  T  S  P  T  M  L  P  R  I  E  E  H  G  H  S  M  P  M  P  G  A  *  E  N  G  D  A  G  L  R  *  T  R  R  R  G  A  T  Y  V  R  E  S  S  L  Y  S  A  Y  V  *  H  S  T  R  S  M  *  L  L  I  D  I  E  A  R  S  V  *  K  I  T  L  K  V  L  *  *  *  T  H  N  R  V  Y  V  W  E  L  S  K  G  *  F  G  F  I  L  W  E  M  K  E  T  *  D  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134898" stop="134741"/>
                    <exon start="134371" stop="134104"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAMGNISLVAALLLCLLAFANANTFSVTVSVTENDNPQSCQEQIQSQRLNHCRMYISRSHQYFNDELSMVTDDDHEINQTQEHLQQCCQELRNMDTQCRCPALKKMVMQDCGRQGEEAQRMLGKARYIPRMCNIQPAQCSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="136191" PGL_stop="135890"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136191" e_stop="135890"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="136191" e_stop="135890" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136191" stop="135890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATTCAAATCCAAATTTGGTGTTTTTCCAGCAGTTTTGCTTGCTCTCTTAACTTTCTTTCTTTTGACGGATAGGTTACACTGATAGTATCATTCAACCTGATGATATATGACTTAAACTCTTTCTTTACTATACTTTGTGGTGCACTAGCTTGTAACTACTATTCTTCTGTCTCATTTTACGTGGCACATTTTTAGTATGGTCACATTTCTATATACATTATTACATTGAGCTTTGAAGTTGAAGAGTAATGTAATCAAGTTATGACAGCAAAATGAAGAAAGAAAGAAAAAAAAATGTTG</gDNA_template>
            <first_frame> A  F  K  S  K  F  G  V  F  P  A  V  L  L  A  L  L  T  F  F  L  L  T  D  R  L  H  *  *  Y  H  S  T  *  *  Y  M  T  *  T  L  S  L  L  Y  F  V  V  H  *  L  V  T  T  I  L  L  S  H  F  T  W  H  I  F  S  M  V  T  F  L  Y  T  L  L  H  *  A  L  K  L  K  S  N  V  I  K  L  *  Q  Q  N  E  E  R  K  K  K  K  C   </first_frame>
            <second_frame>  H  S  N  P  N  L  V  F  F  Q  Q  F  C  L  L  S  *  L  S  F  F  *  R  I  G  Y  T  D  S  I  I  Q  P  D  D  I  *  L  K  L  F  L  Y  Y  T  L  W  C  T  S  L  *  L  L  F  F  C  L  I  L  R  G  T  F  L  V  W  S  H  F  Y  I  H  Y  Y  I  E  L  *  S  *  R  V  M  *  S  S  Y  D  S  K  M  K  K  E  R  K  K  N  V  </second_frame>
            <third_frame>   I  Q  I  Q  I  W  C  F  S  S  S  F  A  C  S  L  N  F  L  S  F  D  G  *  V  T  L  I  V  S  F  N  L  M  I  Y  D  L  N  S  F  F  T  I  L  C  G  A  L  A  C  N  Y  Y  S  S  V  S  F  Y  V  A  H  F  *  Y  G  H  I  S  I  Y  I  I  T  L  S  F  E  V  E  E  *  C  N  Q  V  M  T  A  K  *  R  K  K  E  K  K  M  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0226J04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="138370" PGL_stop="136282"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138370" e_stop="137625"/>
            <exon e_start="137531" e_stop="136282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="0.982" e_score="0.980"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="138370" e_stop="137625" e_length="746"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="0.982">
            <gDNA_intron_boundary i_start="137624" i_stop="137532" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="137531" e_stop="136282" e_length="1250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138370" stop="137947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138346" stop="137693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138345" stop="137804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138344" stop="137920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138336" stop="137848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138335" stop="137625"/>
              <exon start="137531" stop="137346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138335" stop="137886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138332" stop="137882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138323" stop="137870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138323" stop="137880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138323" stop="137919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138320" stop="137625"/>
              <exon start="137531" stop="137514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138292" stop="137869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138257" stop="138004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138103" stop="137625"/>
              <exon start="137531" stop="137403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138084" stop="137641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137809" stop="137625"/>
              <exon start="137531" stop="137212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137392" stop="136941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137290" stop="136529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136841" stop="136303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136788" stop="136282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTATTTTCGTCCATTTTTTCCCCTTACCACCCCACGCCGTTGTGTCATTTCACACAACGGCATTAGCTGGTGATCATCGATCACCGGTCTCTTCTGGTTTCATCATTCCCGTGAATGTGATCGCAAACAAAGTCATTTAAAAACAAAATCCCAGATATATTCCTCCATAATTAAAGGAATGCAAATTCCATGGAGGAATATCTCTTGGGTCGTACTAGTTTTGGTTGCGTGCAGTTATCAAACATGTAACGGGCAGGATTACGGAGGAGACGAAAAAACGGTAGCAGCACCGCCACCGGAGCAAGAGAATTGCGATGGAATCTTCATCACCTATAATTTCGATGGACGAGAAAAGATATATCCATTAGTGAAGAATGTATCCGCACAGGGATGGTCATTCAAGTCGATGTTAACGGTGTTGAATGCCGGAACTTTTGAGCTGAAATCATGGCAAGTTTTCATCGGATTTCAGCATAACGAGCTTTTAGTATCGGCGGACGGTGCAGTTGCAATTGACGGCGATGGATTTCCGGTACGGGTGGGTAAAAATGGTACAACATTGGCTGGGTATCCACAATCCGATTTGAAAACGGCGATTGATACCGCCGGTGATTTTACTCAGATGTCAGCTCAAATCAATATTAAGGGGACGCAATTTGGTCTTAGAGAGAAAACAAATCCAATGCCTTCAACAATCAAGCTCGTCAATGAAGGATACAAATGCCCTGCTCCTAAGCGCTATA : AAAGTTACATGCATGTCTGTTGCAAGAGGGATCTTAAATTCAAGCCTAAGAAGGTGGTTACCAAGTTCATGCCTCGTCGTTATGGAGATCTTTCCATAACTTACGATGTTCTATCAGCATTCACGAATAGGTATCAGGCTCAAGTCACACTCGACAATCTGAATCCTTTGGGTCGTCTTGATCATTGGAACTTAACGTGGGAGTGGATGAGGAACGAGTTCATTAACACAATTAAAGGCGCGCATACTCACAAAATTGATCCTTCTGAATGTATTTACGGACCACAAGGACAATATTACAAGGATTTCGATTTCACTCCTGTGATAAATTGCCAAAAGAAACCAATCATTTCCGATTTACCTAAGGAGAAAGCAAACGATGACAAATTTGGGAAGTTGCCTTATTGTTGTAGAAACGGAACTCTTTTGTCACCTATAATGAACGAAACAGAAGCAAGGTCGATTTTCCAGATGGAAGTTTTCAAACTTCCCCCTGATTTAAACAGAACCGCGTTAAATCCACCTCAAAACTGGAAAATCACGGGCACAATTAACCCGTCTTATTCATGTGGACCGCCAGTCAGAATTGATCCATCAGTATTCCCGGATCCTAAAGGAATCGGAATTGCTACTGCTGTTGCTAGTTGGCAAATTACTTGTAACATTACGCGTCCTAAGCCCAAAGCAGCCAAATGTTGTGTTTCTTTTTCGGCTTATTATGCTGCATCCGTTATCCCCTGCAACACTTGCGCTTGTGGCTGTGAAGAGACGTCTAAATGTGACGCGAACAAAAAGCCACTACTTCTCCCTCCAGAAGCGCTACTCGTCCCTTTTGAAAATAGGGACTTAATGGCGAAAGCTTGGAGCAATATCAAACATCTTGGCCCTATGCCTAAGAAACTACCTTGTCCTGATAATTGCGGAGTGAGCATCAATTGGCATGTGGATAGTAACTATAAAACAGGATGGACTGCGCGTATAACGCTCTTTAACTGGGGAAATGACGCGTTTGAAAACTGGTTTTCCGCTATCCAAATGAAGAAAGATGTAGCTAATGGCTATGAAAACGTGTACTCGTTTAACGGTACAAGGTTACCTAAAGAAAAGAGTAACACTATATTTATGCAAGGTTTACCTGGTTTGAAATTCTTGGTTGGAGAGGTTAATGGGACTAATCCTAATAAGGATCCAAGAGTACCTGGAAAACAACAATCAATTATTTCATTTTTGAAGAAGAATACACCACATATC</gDNA_template>
            <first_frame> S  L  F  S  S  I  F  S  P  Y  H  P  T  P  L  C  H  F  T  Q  R  H  *  L  V  I  I  D  H  R  S  L  L  V  S  S  F  P  *  M  *  S  Q  T  K  S  F  K  N  K  I  P  D  I  F  L  H  N  *  R  N  A  N  S  M  E  E  Y  L  L  G  R  T  S  F  G  C  V  Q  L  S  N  M  *  R  A  G  L  R  R  R  R  K  N  G  S  S  T  A  T  G  A  R  E  L  R  W  N  L  H  H  L  *  F  R  W  T  R  K  D  I  S  I  S  E  E  C  I  R  T  G  M  V  I  Q  V  D  V  N  G  V  E  C  R  N  F  *  A  E  I  M  A  S  F  H  R  I  S  A  *  R  A  F  S  I  G  G  R  C  S  C  N  *  R  R  W  I  S  G  T  G  G  *  K  W  Y  N  I  G  W  V  S  T  I  R  F  E  N  G  D  *  Y  R  R  *  F  Y  S  D  V  S  S  N  Q  Y  *  G  D  A  I  W  S  *  R  E  N  K  S  N  A  F  N  N  Q  A  R  Q  *  R  I  Q  M  P  C  S  *  A  L  * :   K  L  H  A  C  L  L  Q  E  G  S  *  I  Q  A  *  E  G  G  Y  Q  V  H  A  S  S  L  W  R  S  F  H  N  L  R  C  S  I  S  I  H  E  *  V  S  G  S  S  H  T  R  Q  S  E  S  F  G  S  S  *  S  L  E  L  N  V  G  V  D  E  E  R  V  H  *  H  N  *  R  R  A  Y  S  Q  N  *  S  F  *  M  Y  L  R  T  T  R  T  I  L  Q  G  F  R  F  H  S  C  D  K  L  P  K  E  T  N  H  F  R  F  T  *  G  E  S  K  R  *  Q  I  W  E  V  A  L  L  L  *  K  R  N  S  F  V  T  Y  N  E  R  N  R  S  K  V  D  F  P  D  G  S  F  Q  T  S  P  *  F  K  Q  N  R  V  K  S  T  S  K  L  E  N  H  G  H  N  *  P  V  L  F  M  W  T  A  S  Q  N  *  S  I  S  I  P  G  S  *  R  N  R  N  C  Y  C  C  C  *  L  A  N  Y  L  *  H  Y  A  S  *  A  Q  S  S  Q  M  L  C  F  F  F  G  L  L  C  C  I  R  Y  P  L  Q  H  L  R  L  W  L  *  R  D  V  *  M  *  R  E  Q  K  A  T  T  S  P  S  R  S  A  T  R  P  F  *  K  *  G  L  N  G  E  S  L  E  Q  Y  Q  T  S  W  P  Y  A  *  E  T  T  L  S  *  *  L  R  S  E  H  Q  L  A  C  G  *  *  L  *  N  R  M  D  C  A  Y  N  A  L  *  L  G  K  *  R  V  *  K  L  V  F  R  Y  P  N  E  E  R  C  S  *  W  L  *  K  R  V  L  V  *  R  Y  K  V  T  *  R  K  E  *  H  Y  I  Y  A  R  F  T  W  F  E  I  L  G  W  R  G  *  W  D  *  S  *  *  G  S  K  S  T  W  K  T  T  I  N  Y  F  I  F  E  E  E  Y  T  T  Y  </first_frame>
            <second_frame>  L  Y  F  R  P  F  F  P  L  T  T  P  R  R  C  V  I  S  H  N  G  I  S  W  *  S  S  I  T  G  L  F  W  F  H  H  S  R  E  C  D  R  K  Q  S  H  L  K  T  K  S  Q  I  Y  S  S  I  I  K  G  M  Q  I  P  W  R  N  I  S  W  V  V  L  V  L  V  A  C  S  Y  Q  T  C  N  G  Q  D  Y  G  G  D  E  K  T  V  A  A  P  P  P  E  Q  E  N  C  D  G  I  F  I  T  Y  N  F  D  G  R  E  K  I  Y  P  L  V  K  N  V  S  A  Q  G  W  S  F  K  S  M  L  T  V  L  N  A  G  T  F  E  L  K  S  W  Q  V  F  I  G  F  Q  H  N  E  L  L  V  S  A  D  G  A  V  A  I  D  G  D  G  F  P  V  R  V  G  K  N  G  T  T  L  A  G  Y  P  Q  S  D  L  K  T  A  I  D  T  A  G  D  F  T  Q  M  S  A  Q  I  N  I  K  G  T  Q  F  G  L  R  E  K  T  N  P  M  P  S  T  I  K  L  V  N  E  G  Y  K  C  P  A  P  K  R  Y   : K  S  Y  M  H  V  C  C  K  R  D  L  K  F  K  P  K  K  V  V  T  K  F  M  P  R  R  Y  G  D  L  S  I  T  Y  D  V  L  S  A  F  T  N  R  Y  Q  A  Q  V  T  L  D  N  L  N  P  L  G  R  L  D  H  W  N  L  T  W  E  W  M  R  N  E  F  I  N  T  I  K  G  A  H  T  H  K  I  D  P  S  E  C  I  Y  G  P  Q  G  Q  Y  Y  K  D  F  D  F  T  P  V  I  N  C  Q  K  K  P  I  I  S  D  L  P  K  E  K  A  N  D  D  K  F  G  K  L  P  Y  C  C  R  N  G  T  L  L  S  P  I  M  N  E  T  E  A  R  S  I  F  Q  M  E  V  F  K  L  P  P  D  L  N  R  T  A  L  N  P  P  Q  N  W  K  I  T  G  T  I  N  P  S  Y  S  C  G  P  P  V  R  I  D  P  S  V  F  P  D  P  K  G  I  G  I  A  T  A  V  A  S  W  Q  I  T  C  N  I  T  R  P  K  P  K  A  A  K  C  C  V  S  F  S  A  Y  Y  A  A  S  V  I  P  C  N  T  C  A  C  G  C  E  E  T  S  K  C  D  A  N  K  K  P  L  L  L  P  P  E  A  L  L  V  P  F  E  N  R  D  L  M  A  K  A  W  S  N  I  K  H  L  G  P  M  P  K  K  L  P  C  P  D  N  C  G  V  S  I  N  W  H  V  D  S  N  Y  K  T  G  W  T  A  R  I  T  L  F  N  W  G  N  D  A  F  E  N  W  F  S  A  I  Q  M  K  K  D  V  A  N  G  Y  E  N  V  Y  S  F  N  G  T  R  L  P  K  E  K  S  N  T  I  F  M  Q  G  L  P  G  L  K  F  L  V  G  E  V  N  G  T  N  P  N  K  D  P  R  V  P  G  K  Q  Q  S  I  I  S  F  L  K  K  N  T  P  H  I </second_frame>
            <third_frame>   S  I  F  V  H  F  F  P  L  P  P  H  A  V  V  S  F  H  T  T  A  L  A  G  D  H  R  S  P  V  S  S  G  F  I  I  P  V  N  V  I  A  N  K  V  I  *  K  Q  N  P  R  Y  I  P  P  *  L  K  E  C  K  F  H  G  G  I  S  L  G  S  Y  *  F  W  L  R  A  V  I  K  H  V  T  G  R  I  T  E  E  T  K  K  R  *  Q  H  R  H  R  S  K  R  I  A  M  E  S  S  S  P  I  I  S  M  D  E  K  R  Y  I  H  *  *  R  M  Y  P  H  R  D  G  H  S  S  R  C  *  R  C  *  M  P  E  L  L  S  *  N  H  G  K  F  S  S  D  F  S  I  T  S  F  *  Y  R  R  T  V  Q  L  Q  L  T  A  M  D  F  R  Y  G  W  V  K  M  V  Q  H  W  L  G  I  H  N  P  I  *  K  R  R  L  I  P  P  V  I  L  L  R  C  Q  L  K  S  I  L  R  G  R  N  L  V  L  E  R  K  Q  I  Q  C  L  Q  Q  S  S  S  S  M  K  D  T  N  A  L  L  L  S  A  I  :  K  V  T  C  M  S  V  A  R  G  I  L  N  S  S  L  R  R  W  L  P  S  S  C  L  V  V  M  E  I  F  P  *  L  T  M  F  Y  Q  H  S  R  I  G  I  R  L  K  S  H  S  T  I  *  I  L  W  V  V  L  I  I  G  T  *  R  G  S  G  *  G  T  S  S  L  T  Q  L  K  A  R  I  L  T  K  L  I  L  L  N  V  F  T  D  H  K  D  N  I  T  R  I  S  I  S  L  L  *  *  I  A  K  R  N  Q  S  F  P  I  Y  L  R  R  K  Q  T  M  T  N  L  G  S  C  L  I  V  V  E  T  E  L  F  C  H  L  *  *  T  K  Q  K  Q  G  R  F  S  R  W  K  F  S  N  F  P  L  I  *  T  E  P  R  *  I  H  L  K  T  G  K  S  R  A  Q  L  T  R  L  I  H  V  D  R  Q  S  E  L  I  H  Q  Y  S  R  I  L  K  E  S  E  L  L  L  L  L  L  V  G  K  L  L  V  T  L  R  V  L  S  P  K  Q  P  N  V  V  F  L  F  R  L  I  M  L  H  P  L  S  P  A  T  L  A  L  V  A  V  K  R  R  L  N  V  T  R  T  K  S  H  Y  F  S  L  Q  K  R  Y  S  S  L  L  K  I  G  T  *  W  R  K  L  G  A  I  S  N  I  L  A  L  C  L  R  N  Y  L  V  L  I  I  A  E  *  A  S  I  G  M  W  I  V  T  I  K  Q  D  G  L  R  V  *  R  S  L  T  G  E  M  T  R  L  K  T  G  F  P  L  S  K  *  R  K  M  *  L  M  A  M  K  T  C  T  R  L  T  V  Q  G  Y  L  K  K  R  V  T  L  Y  L  C  K  V  Y  L  V  *  N  S  W  L  E  R  L  M  G  L  I  L  I  R  I  Q  E  Y  L  E  N  N  N  Q  L  F  H  F  *  R  R  I  H  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138294" stop="137625"/>
                    <exon start="137531" stop="136282"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1920</number_coding_nucleotides>
                  <number_encoded_amino_acids>640</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSITGLFWFHHSRECDRKQSHLKTKSQIYSSIIKGMQIPWRNISWVVLVLVACSYQTCNGQDYGGDEKTVAAPPPEQENCDGIFITYNFDGREKIYPLVKNVSAQGWSFKSMLTVLNAGTFELKSWQVFIGFQHNELLVSADGAVAIDGDGFPVRVGKNGTTLAGYPQSDLKTAIDTAGDFTQMSAQINIKGTQFGLREKTNPMPSTIKLVNEGYKCPAPKRYKSYMHVCCKRDLKFKPKKVVTKFMPRRYGDLSITYDVLSAFTNRYQAQVTLDNLNPLGRLDHWNLTWEWMRNEFINTIKGAHTHKIDPSECIYGPQGQYYKDFDFTPVINCQKKPIISDLPKEKANDDKFGKLPYCCRNGTLLSPIMNETEARSIFQMEVFKLPPDLNRTALNPPQNWKITGTINPSYSCGPPVRIDPSVFPDPKGIGIATAVASWQITCNITRPKPKAAKCCVSFSAYYAASVIPCNTCACGCEETSKCDANKKPLLLPPEALLVPFENRDLMAKAWSNIKHLGPMPKKLPCPDNCGVSINWHVDSNYKTGWTARITLFNWGNDAFENWFSAIQMKKDVANGYENVYSFNGTRLPKEKSNTIFMQGLPGLKFLVGEVNGTNPNKDPRVPGKQQSIISFLKKNTPHI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="-" PGL_start="140438" PGL_stop="139532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140438" e_stop="140195"/>
            <exon e_start="140036" e_stop="139845"/>
            <exon e_start="139755" e_stop="139532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="0.934"/>
          <exon-intron don_prob="0.685" acc_prob="0.953" e_score="0.958"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="140438" e_stop="140195" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="140194" i_stop="140037" i_length="158"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="140036" e_stop="139845" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.685" acc_prob="0.953">
            <gDNA_intron_boundary i_start="139844" i_stop="139756" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="139755" e_stop="139532" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140438" stop="140195"/>
              <exon start="140036" stop="139845"/>
              <exon start="139755" stop="139532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139969" stop="139845"/>
              <exon start="139755" stop="139620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139969" stop="139845"/>
              <exon start="139755" stop="139677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGTGGTGGCACAAGATGGAACGGGGGATTATCAAACACTTGCTGAAGCTGTTGATGCTGCACCAGATAAGAATAAGACGCGTTATGTAATTTATGTAAAGATGGGAATTTATAAAGAGAATGTTGTGGTGACTAAGAAAAAAATGAACTTAATGATTGTTGGTGATGGCATGAATGCTACCATCATTACTGGTAGCCTTAATGTTGTCGATGGATCAACAACCTTCCGCTCTGCCACTCTTG : CTGCAGTTGGCCAAGGATTTATACTACAGGACTTATGTATACAGAACACAGCAGGGCCAGAGAAAGGCCAAGCAGTGGCACTTCGAGTTGGAGCTGATATGTCTGTCATAAATCGTTGTCGTATTGATGCTTATCAAGACACCCTATATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG : GTACTGTTGATTTCATATTTGGTAATGCAGCAGTTGTATTCCAGAAATGTCAGATCGTAGCTAGAAAACCGAATAAAAGACAGAAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTCTGTGACATAATTGCAAGTCCGGACCTTGAACCAGTCATGAATGAATACAAAACATATCTTGGTAGGCCATGGAAA</gDNA_template>
            <first_frame> A  V  V  A  Q  D  G  T  G  D  Y  Q  T  L  A  E  A  V  D  A  A  P  D  K  N  K  T  R  Y  V  I  Y  V  K  M  G  I  Y  K  E  N  V  V  V  T  K  K  K  M  N  L  M  I  V  G  D  G  M  N  A  T  I  I  T  G  S  L  N  V  V  D  G  S  T  T  F  R  S  A  T  L   : A  A  V  G  Q  G  F  I  L  Q  D  L  C  I  Q  N  T  A  G  P  E  K  G  Q  A  V  A  L  R  V  G  A  D  M  S  V  I  N  R  C  R  I  D  A  Y  Q  D  T  L  Y  A  H  S  Q  R  Q  F  Y  R  D  S  Y  V  T   : G  T  V  D  F  I  F  G  N  A  A  V  V  F  Q  K  C  Q  I  V  A  R  K  P  N  K  R  Q  K  N  M  V  T  A  Q  G  R  T  D  P  N  Q  A  T  G  T  S  I  Q  F  C  D  I  I  A  S  P  D  L  E  P  V  M  N  E  Y  K  T  Y  L  G  R  P  W  K </first_frame>
            <second_frame>  Q  W  W  H  K  M  E  R  G  I  I  K  H  L  L  K  L  L  M  L  H  Q  I  R  I  R  R  V  M  *  F  M  *  R  W  E  F  I  K  R  M  L  W  *  L  R  K  K  *  T  *  *  L  L  V  M  A  *  M  L  P  S  L  L  V  A  L  M  L  S  M  D  Q  Q  P  S  A  L  P  L  L  :  L  Q  L  A  K  D  L  Y  Y  R  T  Y  V  Y  R  T  Q  Q  G  Q  R  K  A  K  Q  W  H  F  E  L  E  L  I  C  L  S  *  I  V  V  V  L  M  L  I  K  T  P  Y  M  H  I  L  K  G  N  S  I  E  T  P  T  *  Q  :  V  L  L  I  S  Y  L  V  M  Q  Q  L  Y  S  R  N  V  R  S  *  L  E  N  R  I  K  D  R  K  T  W  *  L  H  K  A  G  R  T  Q  I  R  P  R  G  H  Q  F  S  S  V  T  *  L  Q  V  R  T  L  N  Q  S  *  M  N  T  K  H  I  L  V  G  H  G   </second_frame>
            <third_frame>   S  G  G  T  R  W  N  G  G  L  S  N  T  C  *  S  C  *  C  C  T  R  *  E  *  D  A  L  C  N  L  C  K  D  G  N  L  *  R  E  C  C  G  D  *  E  K  N  E  L  N  D  C  W  *  W  H  E  C  Y  H  H  Y  W  *  P  *  C  C  R  W  I  N  N  L  P  L  C  H  S  C :   C  S  W  P  R  I  Y  T  T  G  L  M  Y  T  E  H  S  R  A  R  E  R  P  S  S  G  T  S  S  W  S  *  Y  V  C  H  K  S  L  S  Y  *  C  L  S  R  H  P  I  C  T  F  S  K  A  I  L  S  R  L  L  R  D  R :   Y  C  *  F  H  I  W  *  C  S  S  C  I  P  E  M  S  D  R  S  *  K  T  E  *  K  T  E  K  H  G  D  C  T  R  Q  D  G  P  K  S  G  H  G  D  I  N  S  V  L  *  H  N  C  K  S  G  P  *  T  S  H  E  *  I  Q  N  I  S  W  *  A  M  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140438" stop="140195"/>
                    <exon start="140036" stop="139845"/>
                    <exon start="139755" stop="139532"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVVAQDGTGDYQTLAEAVDAAPDKNKTRYVIYVKMGIYKENVVVTKKKMNLMIVGDGMNATIITGSLNVVDGSTTFRSATLAAVGQGFILQDLCIQNTAGPEKGQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQIVARKPNKRQKNMVTAQGRTDPNQATGTSIQFCDIIASPDLEPVMNEYKTYLGRPWK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="+" PGL_start="140437" PGL_stop="144312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140437" e_stop="140631"/>
            <exon e_start="143789" e_stop="144312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.766" acc_prob="0.000" e_score="0.897"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="140437" e_stop="140631" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.766" acc_prob="0.000">
            <gDNA_intron_boundary i_start="140632" i_stop="143788" i_length="3157"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="143789" e_stop="144312" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140437" stop="140631"/>
              <exon start="143789" stop="144284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480354" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140530" stop="140631"/>
              <exon start="143789" stop="144312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469743" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATTCGCTATAATGTCCTTACCCGAACTCTCCATCAGCTTCCTATCCCTCGAACTCACCCAATATGGCATTTTTCCTAAACCCTGCCTCAAAACTTCATCATTTGGAGTTGTCACGGATGCAAGCATCGCCAATGCTACCTTAGCTCTCGTGATCAACTCATCAAGAACCGTTCCATTCTTAGTACTTAACGAA : TCCAAGCACGTAACGTGGTTAGTAAGCACACCACTTAGCCAACTTTGCGCATTGGCATGCTCCGAACGACTTCTCTTATCAATTGCTGCAATTGAATCACATACTAAATCAACTGACAGATCAAGAAGCTCAAGACAATCAGTTAAAGCCCCTTGTTCACGAATGTCATTGATCTGATTCTTGATTTTGCGAACCACTGGAATTGCATTGTTCATTTGATGAACAGAGTAAACTAAAAATTTCTTCAGAATACTTAGTCCATCTGAATCAGATGTGACAATTTCATTGGATATTAAATCAGAAACATAACTGAGACAGAGTTGGGAATCTTGTGCAGTTTTACACAGATTAGAATGTTTAATCTCAAATTGATATGGAGCAACAAGAAACACAACTAAGAAGAGAGCAACAAACAAAGTTACAACAAAAGTGAGGATCTTGAAGCTGATTATGGAATTTTGTTTGTGTGTTTTTGTTAACAAAGGTTGTTGAGGAGTAGCCATTTTAGAAGTTCGCAAACTATG</gDNA_template>
            <first_frame> A  F  A  I  M  S  L  P  E  L  S  I  S  F  L  S  L  E  L  T  Q  Y  G  I  F  P  K  P  C  L  K  T  S  S  F  G  V  V  T  D  A  S  I  A  N  A  T  L  A  L  V  I  N  S  S  R  T  V  P  F  L  V  L  N  E  :  S  K  H  V  T  W  L  V  S  T  P  L  S  Q  L  C  A  L  A  C  S  E  R  L  L  L  S  I  A  A  I  E  S  H  T  K  S  T  D  R  S  R  S  S  R  Q  S  V  K  A  P  C  S  R  M  S  L  I  *  F  L  I  L  R  T  T  G  I  A  L  F  I  *  *  T  E  *  T  K  N  F  F  R  I  L  S  P  S  E  S  D  V  T  I  S  L  D  I  K  S  E  T  *  L  R  Q  S  W  E  S  C  A  V  L  H  R  L  E  C  L  I  S  N  *  Y  G  A  T  R  N  T  T  K  K  R  A  T  N  K  V  T  T  K  V  R  I  L  K  L  I  M  E  F  C  L  C  V  F  V  N  K  G  C  *  G  V  A  I  L  E  V  R  K  L   </first_frame>
            <second_frame>  H  S  L  *  C  P  Y  P  N  S  P  S  A  S  Y  P  S  N  S  P  N  M  A  F  F  L  N  P  A  S  K  L  H  H  L  E  L  S  R  M  Q  A  S  P  M  L  P  *  L  S  *  S  T  H  Q  E  P  F  H  S  *  Y  L  T  N :   P  S  T  *  R  G  *  *  A  H  H  L  A  N  F  A  H  W  H  A  P  N  D  F  S  Y  Q  L  L  Q  L  N  H  I  L  N  Q  L  T  D  Q  E  A  Q  D  N  Q  L  K  P  L  V  H  E  C  H  *  S  D  S  *  F  C  E  P  L  E  L  H  C  S  F  D  E  Q  S  K  L  K  I  S  S  E  Y  L  V  H  L  N  Q  M  *  Q  F  H  W  I  L  N  Q  K  H  N  *  D  R  V  G  N  L  V  Q  F  Y  T  D  *  N  V  *  S  Q  I  D  M  E  Q  Q  E  T  Q  L  R  R  E  Q  Q  T  K  L  Q  Q  K  *  G  S  *  S  *  L  W  N  F  V  C  V  F  L  L  T  K  V  V  E  E  *  P  F  *  K  F  A  N  Y  </second_frame>
            <third_frame>   I  R  Y  N  V  L  T  R  T  L  H  Q  L  P  I  P  R  T  H  P  I  W  H  F  S  *  T  L  P  Q  N  F  I  I  W  S  C  H  G  C  K  H  R  Q  C  Y  L  S  S  R  D  Q  L  I  K  N  R  S  I  L  S  T  *  R   : I  Q  A  R  N  V  V  S  K  H  T  T  *  P  T  L  R  I  G  M  L  R  T  T  S  L  I  N  C  C  N  *  I  T  Y  *  I  N  *  Q  I  K  K  L  K  T  I  S  *  S  P  L  F  T  N  V  I  D  L  I  L  D  F  A  N  H  W  N  C  I  V  H  L  M  N  R  V  N  *  K  F  L  Q  N  T  *  S  I  *  I  R  C  D  N  F  I  G  Y  *  I  R  N  I  T  E  T  E  L  G  I  L  C  S  F  T  Q  I  R  M  F  N  L  K  L  I  W  S  N  K  K  H  N  *  E  E  S  N  K  Q  S  Y  N  K  S  E  D  L  E  A  D  Y  G  I  L  F  V  C  F  C  *  Q  R  L  L  R  S  S  H  F  R  S  S  Q  T  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140437" stop="140631"/>
                    <exon start="143789" stop="143965"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFAIMSLPELSISFLSLELTQYGIFPKPCLKTSSFGVVTDASIANATLALVINSSRTVPFLVLNESKHVTWLVSTPLSQLCALACSERLLLSIAAIESHTKSTDRSRSSRQSVKAPCSRMSLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="-" PGL_start="144303" PGL_stop="141963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="144303" e_stop="143337"/>
            <exon e_start="143131" e_stop="142940"/>
            <exon e_start="142851" e_stop="141963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="144303" e_stop="143337" e_length="967"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.991">
            <gDNA_intron_boundary i_start="143336" i_stop="143132" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="143131" e_stop="142940" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.977">
            <gDNA_intron_boundary i_start="142939" i_stop="142852" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="142851" e_stop="141963" e_length="889"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144303" stop="143337"/>
              <exon start="143131" stop="142940"/>
              <exon start="142851" stop="141971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144296" stop="143967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144295" stop="143770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144295" stop="143927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144295" stop="144092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144291" stop="143337"/>
              <exon start="143131" stop="142940"/>
              <exon start="142851" stop="141963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144276" stop="143730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144189" stop="143612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143936" stop="143337"/>
              <exon start="143131" stop="142940"/>
              <exon start="142851" stop="141977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143657" stop="143337"/>
              <exon start="143131" stop="142940"/>
              <exon start="142851" stop="142568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143493" stop="143337"/>
              <exon start="143131" stop="142940"/>
              <exon start="142851" stop="142390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143434" stop="143337"/>
              <exon start="143131" stop="142940"/>
              <exon start="142851" stop="142736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143343" stop="143337"/>
              <exon start="143131" stop="142940"/>
              <exon start="142851" stop="142561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142536" stop="142040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142358" stop="142040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142304" stop="142046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369846" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAACTTCTAAAATGGCTACTCCTCAACAACCTTTGTTAACAAAAACACACAAACAAAATTCCATAATCAGCTTCAAGATCCTCACTTTTGTTGTAACTTTGTTTGTTGCTCTCTTCTTAGTTGTGTTTCTTGTTGCTCCATATCAATTTGAGATTAAACATTCTAATCTGTGTAAAACTGCACAAGATTCCCAACTCTGTCTCAGTTATGTTTCTGATTTAATATCCAATGAAATTGTCACATCTGATTCAGATGGACTAAGTATTCTGAAGAAATTTTTAGTTTACTCTGTTCATCAAATGAACAATGCAATTCCAGTGGTTCGCAAAATCAAGAATCAGATCAATGACATTCGTGAACAAGGGGCTTTAACTGATTGTCTTGAGCTTCTTGATCTGTCAGTTGATTTAGTATGTGATTCAATTGCAGCAATTGATAAGAGAAGTCGTTCGGAGCATGCCAATGCGCAAAGTTGGCTAAGTGGTGTGCTTACTAACCACGTTACGTGCTTGGATGAGCTTGATTCCTTTACTAAAGCTATGATAAATGGAACGAATCTTGATGAGTTGATCTCGAGAGCTAAGGTAGCATTGGCGATGCTTGCGTCTGTGACAACTCCAAATGATGAAGTTTTGAGGCCGGGTTTAGGAAAAATGCCATCTTGGGTGAGTTCGAGGGATAGGAAGCTGATGGAGAGTTCGGGTAAGGACATTGGAGCGAATGCAGTGGTGGCAAAAGATGGAACAGGGAAATATCGAACACTTGCTGAAGCTGTTGCTGCAGCACCAGATAAGAGTAAGACGCGTTATGTAATTTATGTAAAGAGGGGAACTTATAAAGAGAATGTTGAGGTGAGTAGCAGGAAAATGAATTTGATGATTATTGGTGATGGCATGTATGCTACCATCATTACTGGGAGCCTTAATGTTGTCGATGGATCAACAACCTTCCACTCTGCCACTCTTG : CTGCAGTTGGCAAAGGATTTATACTACAGGACATATGTATACAGAACACAGCAGGACCAGCTAAACACCAAGCTGTTGCACTTCGAGTTGGAGCTGATAAGTCTGTCATAAATCGTTGTCGTATCGATGCTTATCAAGACACCCTTTATGCACATTCTCAAAGGCAATTCTATCGAGACTCCTACGTGACAG : GGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGTTGGGCTGAGTGGCACGGAGATTTTGCGTTAAAGACATTGTATTATGGTGAATTTATGAATAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCTAAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGACGTGGCGTATGTGGATGGATTATATGATTAGAGTGATATAAAATTACTCTTTGTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGATTAAGTGTCTAAAGCATAACACACAACTCTAGTGTGACAAGCATTTACATGGCTCATTCCTTACTACTAAGTCGTCAATAAGTTCAGTTAAGGGGTTCATAAGTTAATATACGTATATATATTTATGTTGGCGATAAAGCTGAAACTGATGATGCTTTAATGTAATTATAGTTTTCTGAAAAAGGATATGTGTAATATTAGGTTTTCCCTGATGTTTATGGTTGTGGGGTGGTGGTTATGATAAAAATATGCAAGATGAAAGTCATTGTGTT</gDNA_template>
            <first_frame> R  T  S  K  M  A  T  P  Q  Q  P  L  L  T  K  T  H  K  Q  N  S  I  I  S  F  K  I  L  T  F  V  V  T  L  F  V  A  L  F  L  V  V  F  L  V  A  P  Y  Q  F  E  I  K  H  S  N  L  C  K  T  A  Q  D  S  Q  L  C  L  S  Y  V  S  D  L  I  S  N  E  I  V  T  S  D  S  D  G  L  S  I  L  K  K  F  L  V  Y  S  V  H  Q  M  N  N  A  I  P  V  V  R  K  I  K  N  Q  I  N  D  I  R  E  Q  G  A  L  T  D  C  L  E  L  L  D  L  S  V  D  L  V  C  D  S  I  A  A  I  D  K  R  S  R  S  E  H  A  N  A  Q  S  W  L  S  G  V  L  T  N  H  V  T  C  L  D  E  L  D  S  F  T  K  A  M  I  N  G  T  N  L  D  E  L  I  S  R  A  K  V  A  L  A  M  L  A  S  V  T  T  P  N  D  E  V  L  R  P  G  L  G  K  M  P  S  W  V  S  S  R  D  R  K  L  M  E  S  S  G  K  D  I  G  A  N  A  V  V  A  K  D  G  T  G  K  Y  R  T  L  A  E  A  V  A  A  A  P  D  K  S  K  T  R  Y  V  I  Y  V  K  R  G  T  Y  K  E  N  V  E  V  S  S  R  K  M  N  L  M  I  I  G  D  G  M  Y  A  T  I  I  T  G  S  L  N  V  V  D  G  S  T  T  F  H  S  A  T  L   : A  A  V  G  K  G  F  I  L  Q  D  I  C  I  Q  N  T  A  G  P  A  K  H  Q  A  V  A  L  R  V  G  A  D  K  S  V  I  N  R  C  R  I  D  A  Y  Q  D  T  L  Y  A  H  S  Q  R  Q  F  Y  R  D  S  Y  V  T   : G  T  I  D  F  I  F  G  N  A  A  V  V  F  Q  K  C  Q  L  V  A  R  K  P  G  K  Y  Q  Q  N  M  V  T  A  Q  G  R  T  D  P  N  Q  A  T  G  T  S  I  Q  F  C  D  I  I  A  S  P  D  L  K  P  V  V  K  E  F  P  T  Y  L  G  R  P  W  K  K  Y  S  R  T  V  V  M  E  S  Y  L  G  G  L  I  D  P  S  G  W  A  E  W  H  G  D  F  A  L  K  T  L  Y  Y  G  E  F  M  N  N  G  P  G  A  G  T  S  K  R  V  K  W  P  G  Y  H  V  I  T  D  P  A  E  A  M  S  F  T  V  A  K  L  I  Q  G  G  S  W  L  R  S  T  D  V  A  Y  V  D  G  L  Y  D  *  S  D  I  K  L  L  F  V  Y  V  T  R  H  L  *  K  V  Q  S  K  *  *  *  Y  I  H  M  K  C  H  M  S  R  A  E  P  G  L  S  V  *  S  I  T  H  N  S  S  V  T  S  I  Y  M  A  H  S  L  L  L  S  R  Q  *  V  Q  L  R  G  S  *  V  N  I  R  I  Y  I  Y  V  G  D  K  A  E  T  D  D  A  L  M  *  L  *  F  S  E  K  G  Y  V  *  Y  *  V  F  P  D  V  Y  G  C  G  V  V  V  M  I  K  I  C  K  M  K  V  I  V   </first_frame>
            <second_frame>  E  L  L  K  W  L  L  L  N  N  L  C  *  Q  K  H  T  N  K  I  P  *  S  A  S  R  S  S  L  L  L  *  L  C  L  L  L  S  S  *  L  C  F  L  L  L  H  I  N  L  R  L  N  I  L  I  C  V  K  L  H  K  I  P  N  S  V  S  V  M  F  L  I  *  Y  P  M  K  L  S  H  L  I  Q  M  D  *  V  F  *  R  N  F  *  F  T  L  F  I  K  *  T  M  Q  F  Q  W  F  A  K  S  R  I  R  S  M  T  F  V  N  K  G  L  *  L  I  V  L  S  F  L  I  C  Q  L  I  *  Y  V  I  Q  L  Q  Q  L  I  R  E  V  V  R  S  M  P  M  R  K  V  G  *  V  V  C  L  L  T  T  L  R  A  W  M  S  L  I  P  L  L  K  L  *  *  M  E  R  I  L  M  S  *  S  R  E  L  R  *  H  W  R  C  L  R  L  *  Q  L  Q  M  M  K  F  *  G  R  V  *  E  K  C  H  L  G  *  V  R  G  I  G  S  *  W  R  V  R  V  R  T  L  E  R  M  Q  W  W  Q  K  M  E  Q  G  N  I  E  H  L  L  K  L  L  L  Q  H  Q  I  R  V  R  R  V  M  *  F  M  *  R  G  E  L  I  K  R  M  L  R  *  V  A  G  K  *  I  *  *  L  L  V  M  A  C  M  L  P  S  L  L  G  A  L  M  L  S  M  D  Q  Q  P  S  T  L  P  L  L  :  L  Q  L  A  K  D  L  Y  Y  R  T  Y  V  Y  R  T  Q  Q  D  Q  L  N  T  K  L  L  H  F  E  L  E  L  I  S  L  S  *  I  V  V  V  S  M  L  I  K  T  P  F  M  H  I  L  K  G  N  S  I  E  T  P  T  *  Q  :  G  L  L  I  S  Y  S  V  M  Q  Q  L  Y  S  R  N  A  S  S  *  L  E  N  R  V  N  T  S  K  T  W  *  L  H  K  A  G  R  T  Q  I  R  P  R  G  H  Q  F  S  F  V  I  *  *  Q  V  L  T  *  N  Q  S  *  K  N  S  Q  H  I  L  V  G  H  G  K  N  I  Q  E  L  *  *  W  N  H  T  W  V  V  S  L  I  H  R  V  G  L  S  G  T  E  I  L  R  *  R  H  C  I  M  V  N  L  *  I  M  D  L  V  L  V  L  V  S  V  S  S  G  L  A  I  M  S  L  L  T  P  L  K  L  C  H  S  L  W  L  S  *  F  R  A  D  H  G  *  G  L  L  T  W  R  M  W  M  D  Y  M  I  R  V  I  *  N  Y  S  L  F  M  *  Q  D  I  F  K  K  F  K  V  S  S  S  N  I  S  I  *  S  A  T  *  A  G  Q  S  R  D  *  V  S  K  A  *  H  T  T  L  V  *  Q  A  F  T  W  L  I  P  Y  Y  *  V  V  N  K  F  S  *  G  V  H  K  L  I  Y  V  Y  I  F  M  L  A  I  K  L  K  L  M  M  L  *  C  N  Y  S  F  L  K  K  D  M  C  N  I  R  F  S  L  M  F  M  V  V  G  W  W  L  *  *  K  Y  A  R  *  K  S  L  C  </second_frame>
            <third_frame>   N  F  *  N  G  Y  S  S  T  T  F  V  N  K  N  T  Q  T  K  F  H  N  Q  L  Q  D  P  H  F  C  C  N  F  V  C  C  S  L  L  S  C  V  S  C  C  S  I  S  I  *  D  *  T  F  *  S  V  *  N  C  T  R  F  P  T  L  S  Q  L  C  F  *  F  N  I  Q  *  N  C  H  I  *  F  R  W  T  K  Y  S  E  E  I  F  S  L  L  C  S  S  N  E  Q  C  N  S  S  G  S  Q  N  Q  E  S  D  Q  *  H  S  *  T  R  G  F  N  *  L  S  *  A  S  *  S  V  S  *  F  S  M  *  F  N  C  S  N  *  *  E  K  S  F  G  A  C  Q  C  A  K  L  A  K  W  C  A  Y  *  P  R  Y  V  L  G  *  A  *  F  L  Y  *  S  Y  D  K  W  N  E  S  *  *  V  D  L  E  S  *  G  S  I  G  D  A  C  V  C  D  N  S  K  *  *  S  F  E  A  G  F  R  K  N  A  I  L  G  E  F  E  G  *  E  A  D  G  E  F  G  *  G  H  W  S  E  C  S  G  G  K  R  W  N  R  E  I  S  N  T  C  *  S  C  C  C  S  T  R  *  E  *  D  A  L  C  N  L  C  K  E  G  N  L  *  R  E  C  *  G  E  *  Q  E  N  E  F  D  D  Y  W  *  W  H  V  C  Y  H  H  Y  W  E  P  *  C  C  R  W  I  N  N  L  P  L  C  H  S  C :   C  S  W  Q  R  I  Y  T  T  G  H  M  Y  T  E  H  S  R  T  S  *  T  P  S  C  C  T  S  S  W  S  *  *  V  C  H  K  S  L  S  Y  R  C  L  S  R  H  P  L  C  T  F  S  K  A  I  L  S  R  L  L  R  D  R :   D  Y  *  F  H  I  R  *  C  S  S  C  I  P  E  M  P  A  R  S  *  K  T  G  *  I  P  A  K  H  G  D  C  T  R  Q  D  G  P  K  S  G  H  G  D  I  N  S  V  L  *  Y  N  S  K  S  *  P  K  T  S  R  E  R  I  P  N  I  S  W  *  A  M  E  K  I  F  K  N  C  S  D  G  I  I  L  G  W  S  H  *  S  I  G  L  G  *  V  A  R  R  F  C  V  K  D  I  V  L  W  *  I  Y  E  *  W  T  W  C  W  Y  *  *  A  C  Q  V  A  W  L  S  C  H  Y  *  P  R  *  S  Y  V  I  H  C  G  *  A  D  S  G  R  I  M  V  E  V  Y  *  R  G  V  C  G  W  I  I  *  L  E  *  Y  K  I  T  L  C  L  C  N  K  T  S  L  K  S  S  K  *  V  V  V  I  Y  P  Y  E  V  P  H  E  Q  G  R  A  G  I  K  C  L  K  H  N  T  Q  L  *  C  D  K  H  L  H  G  S  F  L  T  T  K  S  S  I  S  S  V  K  G  F  I  S  *  Y  T  Y  I  Y  L  C  W  R  *  S  *  N  *  *  C  F  N  V  I  I  V  F  *  K  R  I  C  V  I  L  G  F  P  *  C  L  W  L  W  G  G  G  Y  D  K  N  M  Q  D  E  S  H  C  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="-"/>
                <serials PGL_serial="29" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144303" stop="143337"/>
                    <exon start="143131" stop="142940"/>
                    <exon start="142851" stop="142346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1662</number_coding_nucleotides>
                  <number_encoded_amino_acids>554</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTSKMATPQQPLLTKTHKQNSIISFKILTFVVTLFVALFLVVFLVAPYQFEIKHSNLCKTAQDSQLCLSYVSDLISNEIVTSDSDGLSILKKFLVYSVHQMNNAIPVVRKIKNQINDIREQGALTDCLELLDLSVDLVCDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELDSFTKAMINGTNLDELISRAKVALAMLASVTTPNDEVLRPGLGKMPSWVSSRDRKLMESSGKDIGANAVVAKDGTGKYRTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVSSRKMNLMIIGDGMYATIITGSLNVVDGSTTFHSATLAAVGKGFILQDICIQNTAGPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCDIIASPDLKPVVKEFPTYLGRPWKKYSRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAEAMSFTVAKLIQGGSWLRSTDVAYVDGLYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="30" PGL_strand="+" PGL_start="164649" PGL_stop="165218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="164649" e_stop="165218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="164649" e_stop="165218" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="164649" stop="165218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCAGAGCATGCCTCAACTTTGGCAACTATTGAGGCATCACAATTGGTTGTCGTTGAGGATAATCAAAATGTGATAAAAATTGGTTCTTCGACATGTGCAACTACTATATTGAATGCACATCATGGTGTATCTCAAAGATTGGAGGATACAAATTCAAGAGTTGTGGTTGGTGCATCACTAGTTGATTCTCGACAGAAATTAGGTGATGTTAATGCACATAAATCAGATGAAAATCATAGGCAGCATGTAGTTGTTGGTTCTAATGTTAAAAAAATTTCTGTGAGTGACAAGTGATGCATTGGGAAGGTCTGATGCCCCAAATAAGTTTGCTAACCTACGAGATGAGGAAAGTGATGAAGAGGATTGGTTGGATCAGTGCTTTGAGAATGCAGCTAGGGATGCAAATATTTCTCCTACGCAACAACGCAATAACAAAAAGAAACATGGAAGAAAGAATTGTTGGGATGGCAACGTGACTGAGGAGTTTGTTCCAAGGCACTTACCAATGTGACTAGCAAAGCAGAATCATATGACAGTGTCAACATATTCAACAAGATCCAATAAT</gDNA_template>
            <first_frame> K  N  Q  S  M  P  Q  L  W  Q  L  L  R  H  H  N  W  L  S  L  R  I  I  K  M  *  *  K  L  V  L  R  H  V  Q  L  L  Y  *  M  H  I  M  V  Y  L  K  D  W  R  I  Q  I  Q  E  L  W  L  V  H  H  *  L  I  L  D  R  N  *  V  M  L  M  H  I  N  Q  M  K  I  I  G  S  M  *  L  L  V  L  M  L  K  K  F  L  *  V  T  S  D  A  L  G  R  S  D  A  P  N  K  F  A  N  L  R  D  E  E  S  D  E  E  D  W  L  D  Q  C  F  E  N  A  A  R  D  A  N  I  S  P  T  Q  Q  R  N  N  K  K  K  H  G  R  K  N  C  W  D  G  N  V  T  E  E  F  V  P  R  H  L  P  M  *  L  A  K  Q  N  H  M  T  V  S  T  Y  S  T  R  S  N  N </first_frame>
            <second_frame>  K  T  R  A  C  L  N  F  G  N  Y  *  G  I  T  I  G  C  R  *  G  *  S  K  C  D  K  N  W  F  F  D  M  C  N  Y  Y  I  E  C  T  S  W  C  I  S  K  I  G  G  Y  K  F  K  S  C  G  W  C  I  T  S  *  F  S  T  E  I  R  *  C  *  C  T  *  I  R  *  K  S  *  A  A  C  S  C  W  F  *  C  *  K  N  F  C  E  *  Q  V  M  H  W  E  G  L  M  P  Q  I  S  L  L  T  Y  E  M  R  K  V  M  K  R  I  G  W  I  S  A  L  R  M  Q  L  G  M  Q  I  F  L  L  R  N  N  A  I  T  K  R  N  M  E  E  R  I  V  G  M  A  T  *  L  R  S  L  F  Q  G  T  Y  Q  C  D  *  Q  S  R  I  I  *  Q  C  Q  H  I  Q  Q  D  P  I   </second_frame>
            <third_frame>   K  P  E  H  A  S  T  L  A  T  I  E  A  S  Q  L  V  V  V  E  D  N  Q  N  V  I  K  I  G  S  S  T  C  A  T  T  I  L  N  A  H  H  G  V  S  Q  R  L  E  D  T  N  S  R  V  V  V  G  A  S  L  V  D  S  R  Q  K  L  G  D  V  N  A  H  K  S  D  E  N  H  R  Q  H  V  V  V  G  S  N  V  K  K  I  S  V  S  D  K  *  C  I  G  K  V  *  C  P  K  *  V  C  *  P  T  R  *  G  K  *  *  R  G  L  V  G  S  V  L  *  E  C  S  *  G  C  K  Y  F  S  Y  A  T  T  Q  *  Q  K  E  T  W  K  K  E  L  L  G  W  Q  R  D  *  G  V  C  S  K  A  L  T  N  V  T  S  K  A  E  S  Y  D  S  V  N  I  F  N  K  I  Q  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="30" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="164651" stop="164947"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPEHASTLATIEASQLVVVEDNQNVIKIGSSTCATTILNAHHGVSQRLEDTNSRVVVGASLVDSRQKLGDVNAHKSDENHRQHVVVGSNVKKISVSDK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0226J04.1" strand="+"/>
                <serials PGL_serial="30" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="164937" stop="165164"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTSDALGRSDAPNKFANLRDEESDEEDWLDQCFENAARDANISPTQQRNNKKKHGRKNCWDGNVTEEFVPRHLPM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 714 chains have been computed
$ 
$ memory statistics:
$ 3120144 bytes spliced alignments in total
$ 556 spliced alignments have been stored
$ 5611 bytes was the average size of a spliced alignment
$ 55712 bytes predicted gene locations in total
$ 30 predicted gene locations have been stored
$ 1857 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 811 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:32:48
-->
