<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 08:30:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353432" ref_strand="+" ref_description="SGN-E353432 [cTOS-15-H24]">
      <seq>ggacttctataggacaagtaacaggcataagccagctcaaattattgtcttcagggatggcgtcagcgaatcacagtttagtcaagttctgaaccttgagctagatcaaatgatcaaggcatacaagcatcttggtgagggcggcaaccctaagttcaccttgatcgtggctcaaaagaatcaccatacaaaactatttcaagctaatgcagttgataatgtaccaccaggtactgttgtagacacaaatattgtgcatcctagaaataatgattttttcatgtgtgcacatgcggggatgattggaacaactaaacctgcacattatcatgtattgcttgatgagattggtttcgcacctgatgtcctgcaaaatctcatacattcactatcatatgtgtaccaaaggagtaccagcgcgacctctattgtggctcctgtgcgttatgcacacctagcagcacaacaattcgggcagtttgataagtacgaggaccactccgaaactttgtcagaacagggaagtgtcaaatcaattgggactactcccggtaancccactgcccaggctgcacaagaatgtcagcgactcaatgttttttctgttgaaaattgtaaagcttttaaatgcatatgctgtaaatccttagaagtttggtagtatagtacccggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="-" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="6889" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6589" g_stop="6536" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6535" i_stop="1299" i_length="5237">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1298" g_stop="1235" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="118" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1234" i_stop="975" i_length="260">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="974" g_stop="863" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="230" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="862" i_stop="777" i_length="86">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="776" g_stop="703" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="304" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="702" i_stop="489" i_length="214">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="488" g_stop="394" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="399" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="393" i_stop="312" i_length="82">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="311" g_stop="280" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="431" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="279" i_stop="191" i_length="89">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="190" g_stop="1" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="623" r_length="192" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="-" ref_id="SGN-E353432" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6589" e_stop="6536"/>
          <exon e_start="1298" e_stop="1235"/>
          <exon e_start="974" e_stop="863"/>
          <exon e_start="776" e_stop="703"/>
          <exon e_start="488" e_stop="394"/>
          <exon e_start="311" e_stop="280"/>
          <exon e_start="190" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAGGTACTCCAATATTCATGTTTGAAGTCAAAGTTGCATATGCTTTTATACATATGAGTAGTGACATATGTTGCTCGGACTCTCCAAAATGCTCCTGCACCCGTGTTGGATCCTTCAAAAATTCACTACTTCTCAAGGATCCCACACATACTCGAAAGCATTTTTGAAGTCGTAGCAACATAGTTCGTGACAGTTGCTAAGTCAAACAAAAAATTGTTGCTTTAACCACAAATTTTCTATCTAAGATATATAGGATGCTGCTTCATATGATTGCATAAAATCCTTTTAGTTTGCATGAAAGATGTGCCTTGTTGTAGGCATTTTTCTATTGTAAAATATTAGCAGTAATGTCATGCACATAGGCAACAAGATGAAAAAGTTACTCAGCCTCAAAAAAAGATGAAAAAGTTAAATCTTAATATTTCAAAATTCACATATATGTAATTTTTGTGGACAATAGAAGTAACATGTAGCCGTATTGGTTTATTCAAGGTGCAGTAAGCCAAGCTGGCATAGGCACCATATTTCAAAAGAAAGTTAATAGGACTGACTATCATAAAGCACACTATTACAAGGTCAAAGTTGGAGCCAATCATTCTGGATGAACTAAAACAAATCCAGAATCATATAGTTTCTCCCATGAGATGATGTGGGTTGCAGATCAGTGTTCTTAGATGTCATCTTCATATCTTGTCAATCTTGAAAGCCTTTTGATAGGAAAAATCATCTTCACCTGAGATAGATTGAAATAAAACATCTATTTCCTAAGCTGTGCAATTTGTTTTGGCAGAATACATTGGGAAGTGGGAACACCCCCATCCCCACCCCCTGAACTTGACACTATTTATTCTGTCCACCCTGAACAATTTTTGGTCCTAATTACCGCCCCTGAACTTGGTATTTTGATAATTTCAACCTCCTGGATGATCTCAATCCATGGAAGTCCTGTCATGACCCGTTTTCTAAACAAGCGGTAACTGGTACCTGGTGCCTTACATGCCGAGCAAAATCAGCTTGACAGTTCTAACCTGTACTTTGTTAAATTAACATCACATGCCCCATGTGCATTTAAAATAAATAACTAAACTTTTGGATCAATACTCTATTCCAATGATTTTTAAACAATCCAAAAATACATTCTGTAAACAAGTAGAAATTATTGAAAATGATGCCATGTAATGTGAACAAACATGACCCAACTGAAAACACGTCTATGAAGCCTTATTGGAGTACCAAGGGGAATGCACACGACATAGATTTCCTGGCCAATGCCAATCCCCAGAACAAATGCTGGATTAATGAATAAAAATTGTCTCCAAAAAAAAAAAAAGAACAAAAAATTTTCTAACTGAAAGAGGAGAAACTCCATGGTCAAGGTCAGAATTCACCAAATCAACTTCTGGAATAAAGCAACCTAGCTCGTAGTGTGCTTGTCTATGATCTTGTGTCTACATTGACCTAATTGACATAGGTCAATGCAGGTTCCACAAAGAGAACGTCAGCACGCTACTAGCGTTGCTCAATGAGTCTCAACATTCTGCTCACCAAAGTCAAAACAAGACCTTGAATAGAAACATGTGGGTAGTGAAGAGATAAGAGAGGAAACAAGGCATAACTGATCCTAAAGTACCATACAACAGTGAAGCAGGAAAACATAAAACTTATATCTTAGTTCATTTATTCATTCTTTTCACTTTCTTTAAAGTTGTTCCAGTCGACTAAACTTTTCTTGTGCCCAACTGTGACAACTAGTAACCCTTTATATGATTACTGGTGTCCCTTTATATGACCACCAATCTTATGTGCCTCGTTATGACAATATTAGCAACCATTTGTACAGTTGTTCGTGACCCTTTATTTTTTTATCAAGTAATAATTTTCACATTGATAGGGTGTAAAAAGTGCCCATCAAAAGGTAGAGAACCTTACAACGGAACATGGTTTTCTGCAAAAAAACCATCAAATTCTCTATACTTATTGGAACCTCATGGGTGCACCAAAAAGAAATAAGAGCAAAGAGACTGTTTGTCAAATAAGCAATTTTTTCTCTACACTCTCAAAAGATATCCTATTCCTCTCTCTATAGTCTATATGTCTATATGAGTGCCAAGCAACATCCCCTTCTCTGCTTCTCTCTTGTCTTCTAAGGGCCTAACTAACCATCGAGTCTTTCACAGTGCTCGACATTATCACTCAACTCTAAACCATCTTAGAATTTCTCTCCACAAAAGAAGATGCTAACCAATAATGTAATAAAAGGTGGTTATGTCTTCTCCAGATTCTTTACACATGAAACACCAACTGACAGAAGTGATCTTCTTCCTCAAATCATCTGCCATCAAGATTACCACCCTCATAGCTAACCAAGTGAAGAAACAAACTTTTTGAGGTACCCTGGGGATCCATACCGAACTTTGTGGAAAAGTCGATTCTTCCCTGCATGGGAGTTTCTCATAATAGTATTTAACAAGAGTATATGCTCCTAATTGCTACAAGGAAAAGAGGTTGGAATCTGATGTCATCTTCTTGAACTTTTGATCAAAATGATCGTTCAAGGTTCATAAGCTCCAAAAACACTAAAACTCGCACAATAACCAAACAAACGACCATGTGACCTAACTGTTAGTCCCAGCAAGTCATAGATGACTTGGGGTCGCTATAGGAAGACTCTAAACGACGCACAAAAGAAAAAACACAGAAATGACCAAGAGGGTCATTACACTCTTTCCGCAAACCAGGGTATCTTTTTTTCATTTCTTCTTCGGGTTTATATGTAGCCTTTTCTAATTGATGGTTACAACTTACACCACTAGACTTTTACTGACAGTACATCTTTGGTTCTAACCTGCGGACTTGCTTGTCAAGGATCTCTAAAGGTACTTATTCATACATTAAGCTCTCTTTAACCGAGGATAGTTTGGATGGAAAGTCTAGCTCGTAAGCCACCTTACTCATCTTGCTCAAAATTTCATAAGGTCCAACAAATCTAGGACTCAACTTTCCTTTCTTTCCAATTCTTATGACTCCCTTAATTGGTACATTCAAGAATACATAGTTACCTATTCACCTTCCTTGAATTCTAGATCCTTGTGCCTCTTGTCTCCATAAGACTCTTCGTGACTCTTAGCTATATATAAGGTATCAAGCTAGGTGAATTTTAACATTCTACTTGTTAAAACACAATGATCTCTAAATCTACAGTTAAGATCTTGTAAAGCTATGTTGAAGTTTTGATGATTGAAAAATTGTTCAAGTGACATTCACATGCTGAAGAAGAAGGATAGAAGTATCAAGAATCAGGTCCTCATAGATCTCCAAAGAAGTTACATAAAAAGCAACACTGCCAAAGGAACTCATCCAAGAACCTGCTCCTGTGAGTAGAGAAGGAGACTCTCTAAGAGAGAAGATTGAGACGGTTTACATGTGCACTAGATTTTCATGAAGAATGTAACTCTCCAAGGAACTGAAAAGGTATACAAGGAAAGTTACGATAAACTTGCACATGGAATTAGTTTTAAACAAGAAGTTGAAGAAGCAAATGTTAAACCAAGTCAAATTCGGATTGGATTCTCGGTGAATGTTGAACCAAATCTAACTTAGATTGGATATCAAGAAGCAGGGGTGGATTTAGGCGTAGGTAAGGTGTGTCACAGGACACGTCTTCGTCAATTTTTCTTACGAATTATACCTGTATAAAAAAAAGAAAAAAGAAATCTTAAAAGGTAAAACGTTAAAAAGGACATCCCTTCTATCAAAATGCTATTAGCTCAAGTGGCAAAGGCGCCACATTTGATTTCATACGTCCCAAGTTCGATTCCCTTTGGGACTACCTTTTTCTATGTTTTTATTGACTCCTTAAATCCTTATATTTGTGACTAGCGAGTTTCCTCAATTTTCTTTTTTGATCTTGTTCATCAATCATATCATTATTTGACATCTCAAATCTCTCTGCATCATGAAAGTATTTTTTGTTATTCTATTTTAAATTATTACTTGCTCAAATTTTTATTTTAGTTTGTTCATAATAATAATTTTATTTTTTTTCTATTGGCTTGTTACAAAGAAACAAGTTAGAATTCATTAAATTGATTACAATTGTCCGCAATCGTCTATTATTTGATCCTCAATTACTATGTGCAGATTACATTATATTAGTCTAAATTTAATGGGGAGTCTAATTTTAATGCATAGGTATTATCCTAAAAAAACATAAACTTTCAAAGTCAATCTTAACAACTCAAGCTTCCTGACTTGGGAGAATACGTCGATGAGACAAAAAGATATCAACGAAGTAAATGAATTGATTTAAGTAAAAATATCAACGAAGTAATGGAATCAATTTAAGTTCATTGCCGATTTATTTGCAGTACAATTGGTTGAATAATATTGTATAAAATTTTATTTAATAATATGAAGATGTAAAGTGGTTTAGTTTAAATTTTGAAATATTTTCTAATTTGAAGAGTAGGTAATTTTTTTAAATTAACCAAAATTTTATAATTTTAAGAAAAATATCATTTCATAAAGTTCACTATTAATGGAGCCCTCAAATTTTAGCCTATAGCAAAAGCTTCATTGATTTTCTTTTTGAGTCATTCTTGTCTCCTAAATGGTGACACCGCTTTGAAAAAATTCTGCGTACGCCACTGTCTTGTAGGCAGCGACTTACTCCTATATAAACAACACGTTAAACAAACTTTGGGGTTTGATCACATCCAAAGACAGAGTCCTCAGAGTGTTCCCAGTTCTACATGAAGAGTCTCGAAGAAGAAGTTGTTGCAACAAACAACCTGTTCCTATCAAGTTTATCTATACTGTTTTTAGTTTGTAATAGCTAGTTTCTTGAAGTAGTTACAAGGAAGGATCATTACATTCTTTTAGATTGTAGTAGGTGTTATCTTGAGTTGTGAAGGGTGGAAGGAGAAGAGTATAGGGTGTAGAGAAGACGGGATTGCTGGGAACAAGTCCTAAGGTGTTACAAGAGCGGTTGTAAACCTTGAGTTATAGTGGAGAATTGGATCCTGTTTTTTGATTCCTAAAGTAAGAAATTTTTCCAAATCAAATTCTTGTGTTGATTTACTTTCCGCGATTTACCTTCTTGCATAGTGAATTGAGGTTTATGTGGCTGAGATTTTTATAGCAGTCCCTTTTTCAAGTTTCTGTTTGCAATAACATGATGATTGTTCTTAGTTATTATATCGATAGCTGTTTGCAGTTGACATAACACTGTCCTTTGTTAGGGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAGGTAATGTCCTTTTTATCTGAAAAATGTTTATGCCTTATGTCGTTCTGATAAAGTCATACCTAATACTGCATCATAGAGTTATTTATCTTTATAGAAACGTTTAATTTCTTATCTTATGTTTTTCATGACACAAAATTAAAATGAATATTAGGATTTAATGCTTAAATTGAGGCATCTCTTAGGATCTGAATTCTATACATCATCCATCAGTTTTTAAGTTCCTGGATGTTTACTTTTAGTCTCGTATTTTCTGAAAACAGGCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAGGTCTGTGACTTTCCAGCTACTCTTTTGATCTACTTCAACTTATGTGTGCTGAGGTATTATTTAAAATGCATTCTCTCTCCCCTCAGGTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATTGTAAGTTACTCTAATCCCTTTATCCATCTGGTGTTTCCTAGATTTTGCCTACTTATCCTGGCGTATAGGACCTTCCCTAGTACATAATTAGTTGTTTCTTGTGTCGTTATGTGTTACCTGGGCTTTAAGTTTTTTTAATTTCATCTCCTTCAGTGCTTCACCAATATTAGAATAATATAAACTGATAATAATCTCTCTATAAATTTTCCTACAGGGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGTGTAAGCTGTCTGATTTGTAATCTATAAGTTATTATGATGCACTTTGCAAGTTTAATGTGAATAGTACTTTGTTGTCTTTCAGGTACCAAAGGAGTACCAGCGCGACCTCTATTGGTAATTCCTCTTATCCTGCATTAAATTTTTTGAATTATAGAATTAGCAAAATTAAGCAAATCATCCAACTTCATCCATTGTTGCTGCAGTGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAGTGTCAAATCAATTGGGACTACT-CCGGTAACCCAACTGCCCAGGCTGCACAAGAATGTCAGCGACTCAATG-TTTTTCTGTTGAAAATTGTAAAGCTT</genome_strand>
        <mrna_strand>GGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAG....................................................................................................................................................................................................................................................................GCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAG......................................................................................GTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATT......................................................................................................................................................................................................................GGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGT..................................................................................GTACCAAAGGAGTACCAGCGCGACCTCTATTG.........................................................................................TGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAGTGTCAAATCAATTGGGACTACTCCCGGTAANCCCACTGCCCAGGCTGCACAAGAATGTCAGCGACTCAATGTTTTTTCTGTTGAAAATTGTAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349173" ref_strand="+" ref_description="SGN-E349173 [cTOS-2-A20]">
      <seq>ggacttctataggacaagtaacaggcataagccagctcaaattattgtcttcagggatggcgtcagcgaatcacagtttagtcaagttctgaaccttgagctagatcaaatgatcaaggcatacaagcatcttggtgagggcggcaaccctaagttcaccttgatcgtggctcaaaagaatcaccatacaaaactatttcaagctaatgcagttgataatgtaccaccaggtactgttgtagacacaaatattgtgcatcctagaaataatgattttttcatgtgtgcacatgcggggatgattggaacaactaaacctgcacattatcatgtattgcttgatgagattggtttcgcacctgatgtcctgcaaaatctcatacattcactatcatatgtgtaccaaaggagtaccagcgcgacctctattgtggctcctgtgcgttatgcacacctagcagcacaacaattcgggcagtttgataagtacgaggaccactccgaaactttgtcagaacagggaaatgtcaaatcaattgggactactccggtaacccaactgcccaggctgcaccagaatgtcaacgactcaatgtttttctgttgaaaactgtaaagcttttaaatgcatatgctgttaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="-" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="6889" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6589" g_stop="6536" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6535" i_stop="1299" i_length="5237">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1298" g_stop="1235" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="118" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1234" i_stop="975" i_length="260">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="974" g_stop="863" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="230" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="862" i_stop="777" i_length="86">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="776" g_stop="703" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="304" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="702" i_stop="489" i_length="214">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="488" g_stop="394" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="399" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="393" i_stop="312" i_length="82">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="311" g_stop="280" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="431" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="279" i_stop="191" i_length="89">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="190" g_stop="1" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="621" r_length="190" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="-" ref_id="SGN-E349173" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6589" e_stop="6536"/>
          <exon e_start="1298" e_stop="1235"/>
          <exon e_start="974" e_stop="863"/>
          <exon e_start="776" e_stop="703"/>
          <exon e_start="488" e_stop="394"/>
          <exon e_start="311" e_stop="280"/>
          <exon e_start="190" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAGGTACTCCAATATTCATGTTTGAAGTCAAAGTTGCATATGCTTTTATACATATGAGTAGTGACATATGTTGCTCGGACTCTCCAAAATGCTCCTGCACCCGTGTTGGATCCTTCAAAAATTCACTACTTCTCAAGGATCCCACACATACTCGAAAGCATTTTTGAAGTCGTAGCAACATAGTTCGTGACAGTTGCTAAGTCAAACAAAAAATTGTTGCTTTAACCACAAATTTTCTATCTAAGATATATAGGATGCTGCTTCATATGATTGCATAAAATCCTTTTAGTTTGCATGAAAGATGTGCCTTGTTGTAGGCATTTTTCTATTGTAAAATATTAGCAGTAATGTCATGCACATAGGCAACAAGATGAAAAAGTTACTCAGCCTCAAAAAAAGATGAAAAAGTTAAATCTTAATATTTCAAAATTCACATATATGTAATTTTTGTGGACAATAGAAGTAACATGTAGCCGTATTGGTTTATTCAAGGTGCAGTAAGCCAAGCTGGCATAGGCACCATATTTCAAAAGAAAGTTAATAGGACTGACTATCATAAAGCACACTATTACAAGGTCAAAGTTGGAGCCAATCATTCTGGATGAACTAAAACAAATCCAGAATCATATAGTTTCTCCCATGAGATGATGTGGGTTGCAGATCAGTGTTCTTAGATGTCATCTTCATATCTTGTCAATCTTGAAAGCCTTTTGATAGGAAAAATCATCTTCACCTGAGATAGATTGAAATAAAACATCTATTTCCTAAGCTGTGCAATTTGTTTTGGCAGAATACATTGGGAAGTGGGAACACCCCCATCCCCACCCCCTGAACTTGACACTATTTATTCTGTCCACCCTGAACAATTTTTGGTCCTAATTACCGCCCCTGAACTTGGTATTTTGATAATTTCAACCTCCTGGATGATCTCAATCCATGGAAGTCCTGTCATGACCCGTTTTCTAAACAAGCGGTAACTGGTACCTGGTGCCTTACATGCCGAGCAAAATCAGCTTGACAGTTCTAACCTGTACTTTGTTAAATTAACATCACATGCCCCATGTGCATTTAAAATAAATAACTAAACTTTTGGATCAATACTCTATTCCAATGATTTTTAAACAATCCAAAAATACATTCTGTAAACAAGTAGAAATTATTGAAAATGATGCCATGTAATGTGAACAAACATGACCCAACTGAAAACACGTCTATGAAGCCTTATTGGAGTACCAAGGGGAATGCACACGACATAGATTTCCTGGCCAATGCCAATCCCCAGAACAAATGCTGGATTAATGAATAAAAATTGTCTCCAAAAAAAAAAAAAGAACAAAAAATTTTCTAACTGAAAGAGGAGAAACTCCATGGTCAAGGTCAGAATTCACCAAATCAACTTCTGGAATAAAGCAACCTAGCTCGTAGTGTGCTTGTCTATGATCTTGTGTCTACATTGACCTAATTGACATAGGTCAATGCAGGTTCCACAAAGAGAACGTCAGCACGCTACTAGCGTTGCTCAATGAGTCTCAACATTCTGCTCACCAAAGTCAAAACAAGACCTTGAATAGAAACATGTGGGTAGTGAAGAGATAAGAGAGGAAACAAGGCATAACTGATCCTAAAGTACCATACAACAGTGAAGCAGGAAAACATAAAACTTATATCTTAGTTCATTTATTCATTCTTTTCACTTTCTTTAAAGTTGTTCCAGTCGACTAAACTTTTCTTGTGCCCAACTGTGACAACTAGTAACCCTTTATATGATTACTGGTGTCCCTTTATATGACCACCAATCTTATGTGCCTCGTTATGACAATATTAGCAACCATTTGTACAGTTGTTCGTGACCCTTTATTTTTTTATCAAGTAATAATTTTCACATTGATAGGGTGTAAAAAGTGCCCATCAAAAGGTAGAGAACCTTACAACGGAACATGGTTTTCTGCAAAAAAACCATCAAATTCTCTATACTTATTGGAACCTCATGGGTGCACCAAAAAGAAATAAGAGCAAAGAGACTGTTTGTCAAATAAGCAATTTTTTCTCTACACTCTCAAAAGATATCCTATTCCTCTCTCTATAGTCTATATGTCTATATGAGTGCCAAGCAACATCCCCTTCTCTGCTTCTCTCTTGTCTTCTAAGGGCCTAACTAACCATCGAGTCTTTCACAGTGCTCGACATTATCACTCAACTCTAAACCATCTTAGAATTTCTCTCCACAAAAGAAGATGCTAACCAATAATGTAATAAAAGGTGGTTATGTCTTCTCCAGATTCTTTACACATGAAACACCAACTGACAGAAGTGATCTTCTTCCTCAAATCATCTGCCATCAAGATTACCACCCTCATAGCTAACCAAGTGAAGAAACAAACTTTTTGAGGTACCCTGGGGATCCATACCGAACTTTGTGGAAAAGTCGATTCTTCCCTGCATGGGAGTTTCTCATAATAGTATTTAACAAGAGTATATGCTCCTAATTGCTACAAGGAAAAGAGGTTGGAATCTGATGTCATCTTCTTGAACTTTTGATCAAAATGATCGTTCAAGGTTCATAAGCTCCAAAAACACTAAAACTCGCACAATAACCAAACAAACGACCATGTGACCTAACTGTTAGTCCCAGCAAGTCATAGATGACTTGGGGTCGCTATAGGAAGACTCTAAACGACGCACAAAAGAAAAAACACAGAAATGACCAAGAGGGTCATTACACTCTTTCCGCAAACCAGGGTATCTTTTTTTCATTTCTTCTTCGGGTTTATATGTAGCCTTTTCTAATTGATGGTTACAACTTACACCACTAGACTTTTACTGACAGTACATCTTTGGTTCTAACCTGCGGACTTGCTTGTCAAGGATCTCTAAAGGTACTTATTCATACATTAAGCTCTCTTTAACCGAGGATAGTTTGGATGGAAAGTCTAGCTCGTAAGCCACCTTACTCATCTTGCTCAAAATTTCATAAGGTCCAACAAATCTAGGACTCAACTTTCCTTTCTTTCCAATTCTTATGACTCCCTTAATTGGTACATTCAAGAATACATAGTTACCTATTCACCTTCCTTGAATTCTAGATCCTTGTGCCTCTTGTCTCCATAAGACTCTTCGTGACTCTTAGCTATATATAAGGTATCAAGCTAGGTGAATTTTAACATTCTACTTGTTAAAACACAATGATCTCTAAATCTACAGTTAAGATCTTGTAAAGCTATGTTGAAGTTTTGATGATTGAAAAATTGTTCAAGTGACATTCACATGCTGAAGAAGAAGGATAGAAGTATCAAGAATCAGGTCCTCATAGATCTCCAAAGAAGTTACATAAAAAGCAACACTGCCAAAGGAACTCATCCAAGAACCTGCTCCTGTGAGTAGAGAAGGAGACTCTCTAAGAGAGAAGATTGAGACGGTTTACATGTGCACTAGATTTTCATGAAGAATGTAACTCTCCAAGGAACTGAAAAGGTATACAAGGAAAGTTACGATAAACTTGCACATGGAATTAGTTTTAAACAAGAAGTTGAAGAAGCAAATGTTAAACCAAGTCAAATTCGGATTGGATTCTCGGTGAATGTTGAACCAAATCTAACTTAGATTGGATATCAAGAAGCAGGGGTGGATTTAGGCGTAGGTAAGGTGTGTCACAGGACACGTCTTCGTCAATTTTTCTTACGAATTATACCTGTATAAAAAAAAGAAAAAAGAAATCTTAAAAGGTAAAACGTTAAAAAGGACATCCCTTCTATCAAAATGCTATTAGCTCAAGTGGCAAAGGCGCCACATTTGATTTCATACGTCCCAAGTTCGATTCCCTTTGGGACTACCTTTTTCTATGTTTTTATTGACTCCTTAAATCCTTATATTTGTGACTAGCGAGTTTCCTCAATTTTCTTTTTTGATCTTGTTCATCAATCATATCATTATTTGACATCTCAAATCTCTCTGCATCATGAAAGTATTTTTTGTTATTCTATTTTAAATTATTACTTGCTCAAATTTTTATTTTAGTTTGTTCATAATAATAATTTTATTTTTTTTCTATTGGCTTGTTACAAAGAAACAAGTTAGAATTCATTAAATTGATTACAATTGTCCGCAATCGTCTATTATTTGATCCTCAATTACTATGTGCAGATTACATTATATTAGTCTAAATTTAATGGGGAGTCTAATTTTAATGCATAGGTATTATCCTAAAAAAACATAAACTTTCAAAGTCAATCTTAACAACTCAAGCTTCCTGACTTGGGAGAATACGTCGATGAGACAAAAAGATATCAACGAAGTAAATGAATTGATTTAAGTAAAAATATCAACGAAGTAATGGAATCAATTTAAGTTCATTGCCGATTTATTTGCAGTACAATTGGTTGAATAATATTGTATAAAATTTTATTTAATAATATGAAGATGTAAAGTGGTTTAGTTTAAATTTTGAAATATTTTCTAATTTGAAGAGTAGGTAATTTTTTTAAATTAACCAAAATTTTATAATTTTAAGAAAAATATCATTTCATAAAGTTCACTATTAATGGAGCCCTCAAATTTTAGCCTATAGCAAAAGCTTCATTGATTTTCTTTTTGAGTCATTCTTGTCTCCTAAATGGTGACACCGCTTTGAAAAAATTCTGCGTACGCCACTGTCTTGTAGGCAGCGACTTACTCCTATATAAACAACACGTTAAACAAACTTTGGGGTTTGATCACATCCAAAGACAGAGTCCTCAGAGTGTTCCCAGTTCTACATGAAGAGTCTCGAAGAAGAAGTTGTTGCAACAAACAACCTGTTCCTATCAAGTTTATCTATACTGTTTTTAGTTTGTAATAGCTAGTTTCTTGAAGTAGTTACAAGGAAGGATCATTACATTCTTTTAGATTGTAGTAGGTGTTATCTTGAGTTGTGAAGGGTGGAAGGAGAAGAGTATAGGGTGTAGAGAAGACGGGATTGCTGGGAACAAGTCCTAAGGTGTTACAAGAGCGGTTGTAAACCTTGAGTTATAGTGGAGAATTGGATCCTGTTTTTTGATTCCTAAAGTAAGAAATTTTTCCAAATCAAATTCTTGTGTTGATTTACTTTCCGCGATTTACCTTCTTGCATAGTGAATTGAGGTTTATGTGGCTGAGATTTTTATAGCAGTCCCTTTTTCAAGTTTCTGTTTGCAATAACATGATGATTGTTCTTAGTTATTATATCGATAGCTGTTTGCAGTTGACATAACACTGTCCTTTGTTAGGGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAGGTAATGTCCTTTTTATCTGAAAAATGTTTATGCCTTATGTCGTTCTGATAAAGTCATACCTAATACTGCATCATAGAGTTATTTATCTTTATAGAAACGTTTAATTTCTTATCTTATGTTTTTCATGACACAAAATTAAAATGAATATTAGGATTTAATGCTTAAATTGAGGCATCTCTTAGGATCTGAATTCTATACATCATCCATCAGTTTTTAAGTTCCTGGATGTTTACTTTTAGTCTCGTATTTTCTGAAAACAGGCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAGGTCTGTGACTTTCCAGCTACTCTTTTGATCTACTTCAACTTATGTGTGCTGAGGTATTATTTAAAATGCATTCTCTCTCCCCTCAGGTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATTGTAAGTTACTCTAATCCCTTTATCCATCTGGTGTTTCCTAGATTTTGCCTACTTATCCTGGCGTATAGGACCTTCCCTAGTACATAATTAGTTGTTTCTTGTGTCGTTATGTGTTACCTGGGCTTTAAGTTTTTTTAATTTCATCTCCTTCAGTGCTTCACCAATATTAGAATAATATAAACTGATAATAATCTCTCTATAAATTTTCCTACAGGGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGTGTAAGCTGTCTGATTTGTAATCTATAAGTTATTATGATGCACTTTGCAAGTTTAATGTGAATAGTACTTTGTTGTCTTTCAGGTACCAAAGGAGTACCAGCGCGACCTCTATTGGTAATTCCTCTTATCCTGCATTAAATTTTTTGAATTATAGAATTAGCAAAATTAAGCAAATCATCCAACTTCATCCATTGTTGCTGCAGTGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAGTGTCAAATCAATTGGGACTACTCCGGTAACCCAACTGCCCAGGCTGCACAAGAATGTCAGCGACTCAATGTTTTTCTGTTGAAAATTGTAAAGCTT</genome_strand>
        <mrna_strand>GGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAG....................................................................................................................................................................................................................................................................GCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAG......................................................................................GTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATT......................................................................................................................................................................................................................GGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGT..................................................................................GTACCAAAGGAGTACCAGCGCGACCTCTATTG.........................................................................................TGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAATGTCAAATCAATTGGGACTACTCCGGTAACCCAACTGCCCAGGCTGCACCAGAATGTCAACGACTCAATGTTTTTCTGTTGAAAACTGTAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355179" ref_strand="+" ref_description="SGN-E355179 [cTOS-18-H13]">
      <seq>ggacttctataggacaagtaacaggcataagccagctcaaattattgtcttcagggatggcgtcagcgaatcacagtttagtcaagttctgaaccttgagctagatcaaatgatcaaggcatacaagcatcttggtgagggcggcaaccctaagttcaccttgatcgtggctcaaaagaatcaccatacaaaactatttcaagctaatgcagttgataatgtaccaccaggtactgttgtagacacaaatattgtgcatcctagaaataatgattttttcatgtgtgcacatgcggggatgattggaacaactaaacctgcacattatcatgtattgcttgatgagattggtttcgcacctgatgtcctgcaaaatctcatacattcactatcatatgtgtaccaaaggagtaccagcgcgacctctattgtggctcctgtgcgttatgcacacctagcagcacaacaattcgggcagtttgataagtacgaggaccactccgaaactttgtcagaacagggaagtgtcaaatcaattgggactactccggtaacccaactgcccaggctgcacaagaatgtcagcgactcaatgtttttctgttgaaaattgtaaagcttttaaatgcatatgctgtaaatccttagtagtttggtagtatagtacccggcntcaaattttgtcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="-" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="6889" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6589" g_stop="6536" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6535" i_stop="1299" i_length="5237">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1298" g_stop="1235" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="118" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1234" i_stop="975" i_length="260">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="974" g_stop="863" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="230" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="862" i_stop="777" i_length="86">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="776" g_stop="703" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="304" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="702" i_stop="489" i_length="214">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="488" g_stop="394" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="399" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="393" i_stop="312" i_length="82">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="311" g_stop="280" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="431" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="279" i_stop="191" i_length="89">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="190" g_stop="1" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="621" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="-" ref_id="SGN-E355179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6589" e_stop="6536"/>
          <exon e_start="1298" e_stop="1235"/>
          <exon e_start="974" e_stop="863"/>
          <exon e_start="776" e_stop="703"/>
          <exon e_start="488" e_stop="394"/>
          <exon e_start="311" e_stop="280"/>
          <exon e_start="190" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAGGTACTCCAATATTCATGTTTGAAGTCAAAGTTGCATATGCTTTTATACATATGAGTAGTGACATATGTTGCTCGGACTCTCCAAAATGCTCCTGCACCCGTGTTGGATCCTTCAAAAATTCACTACTTCTCAAGGATCCCACACATACTCGAAAGCATTTTTGAAGTCGTAGCAACATAGTTCGTGACAGTTGCTAAGTCAAACAAAAAATTGTTGCTTTAACCACAAATTTTCTATCTAAGATATATAGGATGCTGCTTCATATGATTGCATAAAATCCTTTTAGTTTGCATGAAAGATGTGCCTTGTTGTAGGCATTTTTCTATTGTAAAATATTAGCAGTAATGTCATGCACATAGGCAACAAGATGAAAAAGTTACTCAGCCTCAAAAAAAGATGAAAAAGTTAAATCTTAATATTTCAAAATTCACATATATGTAATTTTTGTGGACAATAGAAGTAACATGTAGCCGTATTGGTTTATTCAAGGTGCAGTAAGCCAAGCTGGCATAGGCACCATATTTCAAAAGAAAGTTAATAGGACTGACTATCATAAAGCACACTATTACAAGGTCAAAGTTGGAGCCAATCATTCTGGATGAACTAAAACAAATCCAGAATCATATAGTTTCTCCCATGAGATGATGTGGGTTGCAGATCAGTGTTCTTAGATGTCATCTTCATATCTTGTCAATCTTGAAAGCCTTTTGATAGGAAAAATCATCTTCACCTGAGATAGATTGAAATAAAACATCTATTTCCTAAGCTGTGCAATTTGTTTTGGCAGAATACATTGGGAAGTGGGAACACCCCCATCCCCACCCCCTGAACTTGACACTATTTATTCTGTCCACCCTGAACAATTTTTGGTCCTAATTACCGCCCCTGAACTTGGTATTTTGATAATTTCAACCTCCTGGATGATCTCAATCCATGGAAGTCCTGTCATGACCCGTTTTCTAAACAAGCGGTAACTGGTACCTGGTGCCTTACATGCCGAGCAAAATCAGCTTGACAGTTCTAACCTGTACTTTGTTAAATTAACATCACATGCCCCATGTGCATTTAAAATAAATAACTAAACTTTTGGATCAATACTCTATTCCAATGATTTTTAAACAATCCAAAAATACATTCTGTAAACAAGTAGAAATTATTGAAAATGATGCCATGTAATGTGAACAAACATGACCCAACTGAAAACACGTCTATGAAGCCTTATTGGAGTACCAAGGGGAATGCACACGACATAGATTTCCTGGCCAATGCCAATCCCCAGAACAAATGCTGGATTAATGAATAAAAATTGTCTCCAAAAAAAAAAAAAGAACAAAAAATTTTCTAACTGAAAGAGGAGAAACTCCATGGTCAAGGTCAGAATTCACCAAATCAACTTCTGGAATAAAGCAACCTAGCTCGTAGTGTGCTTGTCTATGATCTTGTGTCTACATTGACCTAATTGACATAGGTCAATGCAGGTTCCACAAAGAGAACGTCAGCACGCTACTAGCGTTGCTCAATGAGTCTCAACATTCTGCTCACCAAAGTCAAAACAAGACCTTGAATAGAAACATGTGGGTAGTGAAGAGATAAGAGAGGAAACAAGGCATAACTGATCCTAAAGTACCATACAACAGTGAAGCAGGAAAACATAAAACTTATATCTTAGTTCATTTATTCATTCTTTTCACTTTCTTTAAAGTTGTTCCAGTCGACTAAACTTTTCTTGTGCCCAACTGTGACAACTAGTAACCCTTTATATGATTACTGGTGTCCCTTTATATGACCACCAATCTTATGTGCCTCGTTATGACAATATTAGCAACCATTTGTACAGTTGTTCGTGACCCTTTATTTTTTTATCAAGTAATAATTTTCACATTGATAGGGTGTAAAAAGTGCCCATCAAAAGGTAGAGAACCTTACAACGGAACATGGTTTTCTGCAAAAAAACCATCAAATTCTCTATACTTATTGGAACCTCATGGGTGCACCAAAAAGAAATAAGAGCAAAGAGACTGTTTGTCAAATAAGCAATTTTTTCTCTACACTCTCAAAAGATATCCTATTCCTCTCTCTATAGTCTATATGTCTATATGAGTGCCAAGCAACATCCCCTTCTCTGCTTCTCTCTTGTCTTCTAAGGGCCTAACTAACCATCGAGTCTTTCACAGTGCTCGACATTATCACTCAACTCTAAACCATCTTAGAATTTCTCTCCACAAAAGAAGATGCTAACCAATAATGTAATAAAAGGTGGTTATGTCTTCTCCAGATTCTTTACACATGAAACACCAACTGACAGAAGTGATCTTCTTCCTCAAATCATCTGCCATCAAGATTACCACCCTCATAGCTAACCAAGTGAAGAAACAAACTTTTTGAGGTACCCTGGGGATCCATACCGAACTTTGTGGAAAAGTCGATTCTTCCCTGCATGGGAGTTTCTCATAATAGTATTTAACAAGAGTATATGCTCCTAATTGCTACAAGGAAAAGAGGTTGGAATCTGATGTCATCTTCTTGAACTTTTGATCAAAATGATCGTTCAAGGTTCATAAGCTCCAAAAACACTAAAACTCGCACAATAACCAAACAAACGACCATGTGACCTAACTGTTAGTCCCAGCAAGTCATAGATGACTTGGGGTCGCTATAGGAAGACTCTAAACGACGCACAAAAGAAAAAACACAGAAATGACCAAGAGGGTCATTACACTCTTTCCGCAAACCAGGGTATCTTTTTTTCATTTCTTCTTCGGGTTTATATGTAGCCTTTTCTAATTGATGGTTACAACTTACACCACTAGACTTTTACTGACAGTACATCTTTGGTTCTAACCTGCGGACTTGCTTGTCAAGGATCTCTAAAGGTACTTATTCATACATTAAGCTCTCTTTAACCGAGGATAGTTTGGATGGAAAGTCTAGCTCGTAAGCCACCTTACTCATCTTGCTCAAAATTTCATAAGGTCCAACAAATCTAGGACTCAACTTTCCTTTCTTTCCAATTCTTATGACTCCCTTAATTGGTACATTCAAGAATACATAGTTACCTATTCACCTTCCTTGAATTCTAGATCCTTGTGCCTCTTGTCTCCATAAGACTCTTCGTGACTCTTAGCTATATATAAGGTATCAAGCTAGGTGAATTTTAACATTCTACTTGTTAAAACACAATGATCTCTAAATCTACAGTTAAGATCTTGTAAAGCTATGTTGAAGTTTTGATGATTGAAAAATTGTTCAAGTGACATTCACATGCTGAAGAAGAAGGATAGAAGTATCAAGAATCAGGTCCTCATAGATCTCCAAAGAAGTTACATAAAAAGCAACACTGCCAAAGGAACTCATCCAAGAACCTGCTCCTGTGAGTAGAGAAGGAGACTCTCTAAGAGAGAAGATTGAGACGGTTTACATGTGCACTAGATTTTCATGAAGAATGTAACTCTCCAAGGAACTGAAAAGGTATACAAGGAAAGTTACGATAAACTTGCACATGGAATTAGTTTTAAACAAGAAGTTGAAGAAGCAAATGTTAAACCAAGTCAAATTCGGATTGGATTCTCGGTGAATGTTGAACCAAATCTAACTTAGATTGGATATCAAGAAGCAGGGGTGGATTTAGGCGTAGGTAAGGTGTGTCACAGGACACGTCTTCGTCAATTTTTCTTACGAATTATACCTGTATAAAAAAAAGAAAAAAGAAATCTTAAAAGGTAAAACGTTAAAAAGGACATCCCTTCTATCAAAATGCTATTAGCTCAAGTGGCAAAGGCGCCACATTTGATTTCATACGTCCCAAGTTCGATTCCCTTTGGGACTACCTTTTTCTATGTTTTTATTGACTCCTTAAATCCTTATATTTGTGACTAGCGAGTTTCCTCAATTTTCTTTTTTGATCTTGTTCATCAATCATATCATTATTTGACATCTCAAATCTCTCTGCATCATGAAAGTATTTTTTGTTATTCTATTTTAAATTATTACTTGCTCAAATTTTTATTTTAGTTTGTTCATAATAATAATTTTATTTTTTTTCTATTGGCTTGTTACAAAGAAACAAGTTAGAATTCATTAAATTGATTACAATTGTCCGCAATCGTCTATTATTTGATCCTCAATTACTATGTGCAGATTACATTATATTAGTCTAAATTTAATGGGGAGTCTAATTTTAATGCATAGGTATTATCCTAAAAAAACATAAACTTTCAAAGTCAATCTTAACAACTCAAGCTTCCTGACTTGGGAGAATACGTCGATGAGACAAAAAGATATCAACGAAGTAAATGAATTGATTTAAGTAAAAATATCAACGAAGTAATGGAATCAATTTAAGTTCATTGCCGATTTATTTGCAGTACAATTGGTTGAATAATATTGTATAAAATTTTATTTAATAATATGAAGATGTAAAGTGGTTTAGTTTAAATTTTGAAATATTTTCTAATTTGAAGAGTAGGTAATTTTTTTAAATTAACCAAAATTTTATAATTTTAAGAAAAATATCATTTCATAAAGTTCACTATTAATGGAGCCCTCAAATTTTAGCCTATAGCAAAAGCTTCATTGATTTTCTTTTTGAGTCATTCTTGTCTCCTAAATGGTGACACCGCTTTGAAAAAATTCTGCGTACGCCACTGTCTTGTAGGCAGCGACTTACTCCTATATAAACAACACGTTAAACAAACTTTGGGGTTTGATCACATCCAAAGACAGAGTCCTCAGAGTGTTCCCAGTTCTACATGAAGAGTCTCGAAGAAGAAGTTGTTGCAACAAACAACCTGTTCCTATCAAGTTTATCTATACTGTTTTTAGTTTGTAATAGCTAGTTTCTTGAAGTAGTTACAAGGAAGGATCATTACATTCTTTTAGATTGTAGTAGGTGTTATCTTGAGTTGTGAAGGGTGGAAGGAGAAGAGTATAGGGTGTAGAGAAGACGGGATTGCTGGGAACAAGTCCTAAGGTGTTACAAGAGCGGTTGTAAACCTTGAGTTATAGTGGAGAATTGGATCCTGTTTTTTGATTCCTAAAGTAAGAAATTTTTCCAAATCAAATTCTTGTGTTGATTTACTTTCCGCGATTTACCTTCTTGCATAGTGAATTGAGGTTTATGTGGCTGAGATTTTTATAGCAGTCCCTTTTTCAAGTTTCTGTTTGCAATAACATGATGATTGTTCTTAGTTATTATATCGATAGCTGTTTGCAGTTGACATAACACTGTCCTTTGTTAGGGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAGGTAATGTCCTTTTTATCTGAAAAATGTTTATGCCTTATGTCGTTCTGATAAAGTCATACCTAATACTGCATCATAGAGTTATTTATCTTTATAGAAACGTTTAATTTCTTATCTTATGTTTTTCATGACACAAAATTAAAATGAATATTAGGATTTAATGCTTAAATTGAGGCATCTCTTAGGATCTGAATTCTATACATCATCCATCAGTTTTTAAGTTCCTGGATGTTTACTTTTAGTCTCGTATTTTCTGAAAACAGGCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAGGTCTGTGACTTTCCAGCTACTCTTTTGATCTACTTCAACTTATGTGTGCTGAGGTATTATTTAAAATGCATTCTCTCTCCCCTCAGGTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATTGTAAGTTACTCTAATCCCTTTATCCATCTGGTGTTTCCTAGATTTTGCCTACTTATCCTGGCGTATAGGACCTTCCCTAGTACATAATTAGTTGTTTCTTGTGTCGTTATGTGTTACCTGGGCTTTAAGTTTTTTTAATTTCATCTCCTTCAGTGCTTCACCAATATTAGAATAATATAAACTGATAATAATCTCTCTATAAATTTTCCTACAGGGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGTGTAAGCTGTCTGATTTGTAATCTATAAGTTATTATGATGCACTTTGCAAGTTTAATGTGAATAGTACTTTGTTGTCTTTCAGGTACCAAAGGAGTACCAGCGCGACCTCTATTGGTAATTCCTCTTATCCTGCATTAAATTTTTTGAATTATAGAATTAGCAAAATTAAGCAAATCATCCAACTTCATCCATTGTTGCTGCAGTGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAGTGTCAAATCAATTGGGACTACTCCGGTAACCCAACTGCCCAGGCTGCACAAGAATGTCAGCGACTCAATGTTTTTCTGTTGAAAATTGTAAAGCTT</genome_strand>
        <mrna_strand>GGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAG....................................................................................................................................................................................................................................................................GCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAG......................................................................................GTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATT......................................................................................................................................................................................................................GGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGT..................................................................................GTACCAAAGGAGTACCAGCGCGACCTCTATTG.........................................................................................TGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAGTGTCAAATCAATTGGGACTACTCCGGTAACCCAACTGCCCAGGCTGCACAAGAATGTCAGCGACTCAATGTTTTTCTGTTGAAAATTGTAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319490" ref_strand="+" ref_description="SGN-E319490 [cTOB-15-I1]">
      <seq>ttgccagagcggaaaaactcagagttatatggaccttggaagaaaaaaagtttgactgacttgggaattgttactcaatgtatctctccgttaaagatcaccgatcgatatctaacaaatgtgcttctcaaaattaatgctaagcttggagggaccaattcactgttggctatggaacatacctctcatctaccgcttattaaggacactccaacaatgatcctgggaatggacgtctctcatggatctcgtgttcaatcagatattccatcaattgctgcggttgtaggatccttatactggccattaatatccaagtataaggcagttgtgcgcagtcaatctccaaagttggaaattgtagaatccttatacaagcctttaccaaatggagacgatgaaggaatcatgagagaactacttctggacttctataggacaagtaacaggcataagccagctcaaattattgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="-" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="7658" stop="6239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7358" g_stop="7328" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7327" i_stop="7254" i_length="74">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.200" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7253" g_stop="7141" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="144" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7140" i_stop="7047" i_length="94">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7046" g_stop="6909" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="282" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6908" i_stop="6821" i_length="88">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6820" g_stop="6690" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="413" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6689" i_stop="6602" i_length="88">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6601" g_stop="6539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="476" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="-" ref_id="SGN-E319490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7358" e_stop="7328"/>
          <exon e_start="7253" e_stop="7141"/>
          <exon e_start="7046" e_stop="6909"/>
          <exon e_start="6820" e_stop="6690"/>
          <exon e_start="6601" e_stop="6539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCAGAGCGGAAAAACTCAGAGTTATATGGTAACGTACTATGTTAGTCCTGCTCATGCTGCTTTCAATATCCTATACTAATTTATACATTTAATAATGTCAAGGACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAGGTAATCTTTTGAATCTGCAATCAACGGTTAGGATATTTTCTACTGTCAGTTATTCTGAGTTGCGATAGTTTTTTCTTTTGCTTGTGCTTAAAAGCTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACCGCTTATTAAGGACACTCCAACAATGATCCTGGGAATGGACGTCTCTCATGGATCTCGTGTTCAATCAGATATTCCATCAATTGCTGCGGTTGTTCTTTTTCCCAAGATATTTTCTCTTTTCTTTGTCAATTGCATTGCAACTGATTTCCTATGCCTTCTTATCATGGTTCTTCCAGGTTGTAGGATCCTTATACTGGCCATTAATATCCAAGTATAAGGCAGTTGTGCGCAGTCAATCTCCAAAGTTGGAAATTGTAGAATCCTTATACAAGCCTTTACCAAATGGAGACGATGAAGGAATCATGAGGTGCACCTTTATATCCAAAAACATGTCAAGTCTTCTATGACAAATTATGTACAGAATCATTTAAATTTTACATGTACTTGTGCTGCAGAGAACTACTTCTGGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTT</genome_strand>
        <mrna_strand>TTGCCAGAGCGGAAAAACTCAGAGTTATATG..........................................................................GACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAG..............................................................................................CTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACCGCTTATTAAGGACACTCCAACAATGATCCTGGGAATGGACGTCTCTCATGGATCTCGTGTTCAATCAGATATTCCATCAATTGCTGCG........................................................................................GTTGTAGGATCCTTATACTGGCCATTAATATCCAAGTATAAGGCAGTTGTGCGCAGTCAATCTCCAAAGTTGGAAATTGTAGAATCCTTATACAAGCCTTTACCAAATGGAGACGATGAAGGAATCATGAG........................................................................................AGAACTACTTCTGGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250549" ref_strand="+" ref_description="SGN-E250549 [cLEG-21-I9]">
      <seq>tcaaatgaacggtagggtccttgaagccccaaagttgaaggttggtaatggcgaagaggtcactccctgtgacggcaggtggaatttcaagaacaagcatcttttcaaccctgcacgaattgaacgctgggcagtggtcaacttctctgccaattgtgatacaagtcacctttcaagggagcttattagttgcggaaggagcaaaggcattcattttgagcgcccacatacactcattgaggaagatccccagtataggcgagctgggcctgtagttcgagtagaacagatgtttgaagagataatagctagactgcctggccatcctgatttcctcctctgtgtcttgccagagcggaaaaactcagagttatatggaccttggaagaaaaaaagtttgactgacttgggaattgttactcaatgtatctctccgttaaagatcaccgatcgatatctaacaaatgtgcttctcaaaattaatgctaagcttggagggaccaattcactgttggctatggaacatacctctcatctaccgcttattaaggacactccaacaatgatcctgggaatggacgtctctcatggatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="-" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8524" stop="6641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8224" g_stop="8191" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8190" i_stop="8104" i_length="87">
            <donor d_prob="0.920" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8103" g_stop="8041" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="97" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8040" i_stop="7694" i_length="347">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7693" g_stop="7580" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="211" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7579" i_stop="7494" i_length="86">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7493" g_stop="7328" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="377" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7327" i_stop="7254" i_length="74">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.200" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7253" g_stop="7141" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="490" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7140" i_stop="7047" i_length="94">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7046" g_stop="6941" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="596" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="-" ref_id="SGN-E250549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8224" e_stop="8191"/>
          <exon e_start="8103" e_stop="8041"/>
          <exon e_start="7693" e_stop="7580"/>
          <exon e_start="7493" e_stop="7328"/>
          <exon e_start="7253" e_stop="7141"/>
          <exon e_start="7046" e_stop="6941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAGGTAGCATCTGCACATTCTCTAATGACAGCGTCCATTAAAATTTTTAATTTCTTTTCTGACTTTACTTTATTATCCTGTAATCTCTAGTTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAGGTGCATTTAACCGCATAACATTACCTTGTAGTATTATTATAAAAGAAATTACCTTGTAGTTTAGGATGTCAACTGCGAATATAATGAGACGTGACAATCATCTGTGGTTATCCTCTATAATTTTGTTACTACCTGGGGATCAACATTTTGAGAACTTGACTATGAAGGAAAGGACGAACGGTGGATATAAATTTTCCCCGATTATTCTCGTTCTGCGGATAGTCTTTTTGGGAAATTGAAGAAGGTTTTTATTATTACGTTACCTACTTTAGTGAGAATATTATAATGTTTACTGCAGTTTTTTGGTTGACCGCAAATTCCACTCTCCCTACCATTTTTACTTGTAGCATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATTGTATGTAGTGTCACATTAATATCTTCAATTCTGTGCTTTGTTGCTGTGTATTCTGGGCTCAAATAGTTTCTTTTCCTGTCTATCAGCATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATGGTAACGTACTATGTTAGTCCTGCTCATGCTGCTTTCAATATCCTATACTAATTTATACATTTAATAATGTCAAGGACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAGGTAATCTTTTGAATCTGCAATCAACGGTTAGGATATTTTCTACTGTCAGTTATTCTGAGTTGCGATAGTTTTTTCTTTTGCTTGTGCTTAAAAGCTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACCGCTTATTAAGGACACTCCAACAATGATCCTGGGAATGGACGTCTCTCATGGATCTC</genome_strand>
        <mrna_strand>TCAAATGAACGGTAGGGTCCTTGAAGCCCCAAAG.......................................................................................TTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAG...........................................................................................................................................................................................................................................................................................................................................................CATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATT......................................................................................CATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATG..........................................................................GACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAG..............................................................................................CTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACCGCTTATTAAGGACACTCCAACAATGATCCTGGGAATGGACGTCTCTCATGGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252795" ref_strand="+" ref_description="SGN-E252795 [cLEG-16-C7]">
      <seq>gatcccccgggctgcaagttcaaatgaacggcagggtccttgattccccaaatttgaaagttggtaatggcgaagaggtcagggcctgtgtacggcaggtggaatttcaagaacaagcatcttttcaaccctgcacgaattgaacgctgggcagtggtcaacttctctgccaattgtgatacaagtcacctttcaagggagcttattagttgcggaaggagcaaaggcattcattttgagcgcccacatacactcattgaggaagatccccagtataggcgagctgggcctgtagttcgagtagaacagatgtttgaagagataatagctagactgcctggccatcctgatttcctcctctgtgtcttgccagagcggaaaaactcagagttatatggaccttggaagaaaaaaagtttgactgacttgggaattgttactcaatgtatctctccgttaaagatcaccgatcgatatctaacaaatgtgcttctcaaaattaatgctaagcttggagggaccaattcactgttggctatggaacatacctctcatctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="-" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8525" stop="6697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8243" g_stop="8191" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.679"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8190" i_stop="8104" i_length="87">
            <donor d_prob="0.920" d_score="0.70"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8103" g_stop="8041" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="117" r_length="64" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8040" i_stop="7694" i_length="347">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7693" g_stop="7580" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="231" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7579" i_stop="7494" i_length="86">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7493" g_stop="7328" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="397" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7327" i_stop="7254" i_length="74">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.200" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7253" g_stop="7141" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="510" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7140" i_stop="7047" i_length="94">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7046" g_stop="6997" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="560" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="-" ref_id="SGN-E252795" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8243" e_stop="8191"/>
          <exon e_start="8103" e_stop="8041"/>
          <exon e_start="7693" e_stop="7580"/>
          <exon e_start="7493" e_stop="7328"/>
          <exon e_start="7253" e_stop="7141"/>
          <exon e_start="7046" e_stop="6997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAGAAAAGCAGTTGATTCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAGGTAGCATCTGCACATTCTCTAATGACAGCGTCCATTAAAATTTTTAATTTCTTTTCTGACTTTACTTTATTATCCTGTAATCTCTAGTTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTG-ACGGCAGGTGGAATTTCAAGAACAAGGTGCATTTAACCGCATAACATTACCTTGTAGTATTATTATAAAAGAAATTACCTTGTAGTTTAGGATGTCAACTGCGAATATAATGAGACGTGACAATCATCTGTGGTTATCCTCTATAATTTTGTTACTACCTGGGGATCAACATTTTGAGAACTTGACTATGAAGGAAAGGACGAACGGTGGATATAAATTTTCCCCGATTATTCTCGTTCTGCGGATAGTCTTTTTGGGAAATTGAAGAAGGTTTTTATTATTACGTTACCTACTTTAGTGAGAATATTATAATGTTTACTGCAGTTTTTTGGTTGACCGCAAATTCCACTCTCCCTACCATTTTTACTTGTAGCATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATTGTATGTAGTGTCACATTAATATCTTCAATTCTGTGCTTTGTTGCTGTGTATTCTGGGCTCAAATAGTTTCTTTTCCTGTCTATCAGCATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATGGTAACGTACTATGTTAGTCCTGCTCATGCTGCTTTCAATATCCTATACTAATTTATACATTTAATAATGTCAAGGACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAGGTAATCTTTTGAATCTGCAATCAACGGTTAGGATATTTTCTACTGTCAGTTATTCTGAGTTGCGATAGTTTTTTCTTTTGCTTGTGCTTAAAAGCTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACC</genome_strand>
        <mrna_strand>GATCCCCCGGGCTGCAAGTTCAAATGAACGGCAGGGTCCTTGATTCCCCAAAT.......................................................................................TTGAAAGTTGGTAATGGCGAAGAGGTCAGGGCCTGTGTACGGCAGGTGGAATTTCAAGAACAAG...........................................................................................................................................................................................................................................................................................................................................................CATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATT......................................................................................CATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATG..........................................................................GACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAG..............................................................................................CTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551324" ref_strand="+" ref_description="SGN-E551324 [TUS-54-F6]">
      <seq>ttcaaatgaacggcagggtccttgaagccccaaagttgaaggttggtaatggcgaagaggtcactccctgtgacggcaggtggaatttcaagaacaagcatcttttcaaccctgcacgaattgaacgctgggcagtggtcaacttctctgccaattgtgatacaagtcacctttcaagggagcttattagttgcggaaggagcaaaggcattcattttgagcgcccacatacactcattgaggaagatccccagtataggcgagctgggcctgtagttcgagtagaacagatgtttgaagagataatagctagactgcctggccatcctgatttcctcctctgtgtcttgccagagcggaaaaactcagagttatatggaccttggaagaaaaaaagtttgactgacttgggaattgttactcaatgtatctctccgttaaagatcaccgatcgatatctaacaaatgtgcttctcanaattaatgctaagcttggagggaccaattcactgttggctatggaacatacctctcatctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="-" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8525" stop="6697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8225" g_stop="8191" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8190" i_stop="8104" i_length="87">
            <donor d_prob="0.920" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8103" g_stop="8041" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="98" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8040" i_stop="7694" i_length="347">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7693" g_stop="7580" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="212" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7579" i_stop="7494" i_length="86">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7493" g_stop="7328" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="378" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7327" i_stop="7254" i_length="74">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.200" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7253" g_stop="7141" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="491" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7140" i_stop="7047" i_length="94">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7046" g_stop="6997" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="541" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="-" ref_id="SGN-E551324" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8225" e_stop="8191"/>
          <exon e_start="8103" e_stop="8041"/>
          <exon e_start="7693" e_stop="7580"/>
          <exon e_start="7493" e_stop="7328"/>
          <exon e_start="7253" e_stop="7141"/>
          <exon e_start="7046" e_stop="6997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAGGTAGCATCTGCACATTCTCTAATGACAGCGTCCATTAAAATTTTTAATTTCTTTTCTGACTTTACTTTATTATCCTGTAATCTCTAGTTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAGGTGCATTTAACCGCATAACATTACCTTGTAGTATTATTATAAAAGAAATTACCTTGTAGTTTAGGATGTCAACTGCGAATATAATGAGACGTGACAATCATCTGTGGTTATCCTCTATAATTTTGTTACTACCTGGGGATCAACATTTTGAGAACTTGACTATGAAGGAAAGGACGAACGGTGGATATAAATTTTCCCCGATTATTCTCGTTCTGCGGATAGTCTTTTTGGGAAATTGAAGAAGGTTTTTATTATTACGTTACCTACTTTAGTGAGAATATTATAATGTTTACTGCAGTTTTTTGGTTGACCGCAAATTCCACTCTCCCTACCATTTTTACTTGTAGCATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATTGTATGTAGTGTCACATTAATATCTTCAATTCTGTGCTTTGTTGCTGTGTATTCTGGGCTCAAATAGTTTCTTTTCCTGTCTATCAGCATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATGGTAACGTACTATGTTAGTCCTGCTCATGCTGCTTTCAATATCCTATACTAATTTATACATTTAATAATGTCAAGGACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAGGTAATCTTTTGAATCTGCAATCAACGGTTAGGATATTTTCTACTGTCAGTTATTCTGAGTTGCGATAGTTTTTTCTTTTGCTTGTGCTTAAAAGCTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACC</genome_strand>
        <mrna_strand>TTCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAG.......................................................................................TTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAG...........................................................................................................................................................................................................................................................................................................................................................CATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATT......................................................................................CATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATG..........................................................................GACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCANAATTAATGCTAAG..............................................................................................CTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688654" ref_strand="+" ref_description="SGN-E688654 [t3_tus_54_F06]">
      <seq>ttcaaatgaacggcagggtccttgaagccccaaagttgaaggttggtaatggcgaagaggtcactccctgtgacggcaggtggaatttcaagaacaagcatcttttcaaccctgcacgaattgaacgctgggcagtggtcaacttctctgccaattgtgatacaagtcacctttcaagggagcttattagttgcggaaggagcaaaggcattcattttgagcgcccacatacactcattgaggaagatccccagtataggcgagctgggcctgtagttcgagtagaacagatgtttgaagagataatagctagactgcctggccatcctgatttcctcctctgtgtcttgccagagcggaaaaactcagagttatatggaccttggaagaaaaaaagtttgactgacttgggaattgttactcaatgtatctctccgttaaagatcaccgatcgatatctaacaaatgtgcttctcaaaattaatgctaagcttggagggaccaattcactgttggctatggaacatacctctcatctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="-" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8525" stop="6697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8225" g_stop="8191" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8190" i_stop="8104" i_length="87">
            <donor d_prob="0.920" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8103" g_stop="8041" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="98" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8040" i_stop="7694" i_length="347">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7693" g_stop="7580" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="212" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7579" i_stop="7494" i_length="86">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7493" g_stop="7328" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="378" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7327" i_stop="7254" i_length="74">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.200" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7253" g_stop="7141" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="491" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7140" i_stop="7047" i_length="94">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7046" g_stop="6997" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="541" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="-" ref_id="SGN-E688654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8225" e_stop="8191"/>
          <exon e_start="8103" e_stop="8041"/>
          <exon e_start="7693" e_stop="7580"/>
          <exon e_start="7493" e_stop="7328"/>
          <exon e_start="7253" e_stop="7141"/>
          <exon e_start="7046" e_stop="6997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAGGTAGCATCTGCACATTCTCTAATGACAGCGTCCATTAAAATTTTTAATTTCTTTTCTGACTTTACTTTATTATCCTGTAATCTCTAGTTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAGGTGCATTTAACCGCATAACATTACCTTGTAGTATTATTATAAAAGAAATTACCTTGTAGTTTAGGATGTCAACTGCGAATATAATGAGACGTGACAATCATCTGTGGTTATCCTCTATAATTTTGTTACTACCTGGGGATCAACATTTTGAGAACTTGACTATGAAGGAAAGGACGAACGGTGGATATAAATTTTCCCCGATTATTCTCGTTCTGCGGATAGTCTTTTTGGGAAATTGAAGAAGGTTTTTATTATTACGTTACCTACTTTAGTGAGAATATTATAATGTTTACTGCAGTTTTTTGGTTGACCGCAAATTCCACTCTCCCTACCATTTTTACTTGTAGCATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATTGTATGTAGTGTCACATTAATATCTTCAATTCTGTGCTTTGTTGCTGTGTATTCTGGGCTCAAATAGTTTCTTTTCCTGTCTATCAGCATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATGGTAACGTACTATGTTAGTCCTGCTCATGCTGCTTTCAATATCCTATACTAATTTATACATTTAATAATGTCAAGGACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAGGTAATCTTTTGAATCTGCAATCAACGGTTAGGATATTTTCTACTGTCAGTTATTCTGAGTTGCGATAGTTTTTTCTTTTGCTTGTGCTTAAAAGCTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACC</genome_strand>
        <mrna_strand>TTCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAG.......................................................................................TTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAG...........................................................................................................................................................................................................................................................................................................................................................CATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATT......................................................................................CATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATG..........................................................................GACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAG..............................................................................................CTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687647" ref_strand="+" ref_description="SGN-E687647 [T3_tus_79_D19]">
      <seq>ttcatatagtgaagattaggtgcgtttaacatgtttatcccgatgggaacacttatgaaaatggaagtggacatatttctgttacttggccatttcggggacaacttctctgcctcctaattgagaagaaaaatgcggcgctttcaacctatcaagtctatatggggacttgctaaatttatttctcacaacacattcaaagaggcctctaacggataccttgttgacgacaaatgtgtggttggagcagagatatttgtcgtccaaaggcaagcaattggtgaatgtttgtctatggtgaaatctaatgacttgtttaagcgtgaatggaacatctgtaatttctccaagcttgatgaaaattggctttctgaagaatttactgtgggaggttacaaatggaagctctcgttgtgtccaaacggcaatggaaacagtaagggatgtgatgtttcaatatttctaaattctgttgatgctaaggactttgatcatcatgaaaaagtgaaggtaaattgcagcataaacctcaaagatcagacaaatggtggatgcaaaaagttatcttattgtgtttggtattcaactacgagaaagagttgtggttttccaggttttatgcctttaactcagttgcgtgataagaaaaaaaggctatcttgtcaaagattgtattgtggcggaggttgagctaaaaattgattttaacatgtaaacattctatagagataaattttgtccttcttccatgccccctctttgttattggagaagttgtcactgctcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="+" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20141" stop="21994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20440" g_stop="20566" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20567" i_stop="20768" i_length="202">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20769" g_stop="21042" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="401" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21043" i_stop="21144" i_length="102">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21145" g_stop="21311" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="568" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21312" i_stop="21470" i_length="159">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21471" g_stop="21694" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="791" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="+" ref_id="SGN-E687647" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20440" e_stop="20566"/>
          <exon e_start="20769" e_stop="21042"/>
          <exon e_start="21145" e_stop="21311"/>
          <exon e_start="21471" e_stop="21694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATATAGTGAAGATTAGGTGCGTTTAACATGTTTATCCCGATGGGAACACTTATGAAAATGGAAGTGGACATATTTCTGTTACTTGGCCATTTCGGGGACAACTTCTCTGCCTCCTAATTGAGAAGTCAGTGCTATATGTACCTTCTTTATGTTCAATCAACTTCGTGATAATTATCTTTCCTTGCGAGATATAATATTATTTCCCTTTTGTCTATCTCATCTAAGCCTTTTGGTTATCGTGAAATAGCATTGATAACCAGAGTGACTTTCAATTTTATTTTTTCAATTATCAACTAAAACTGTGATACAATGATGCTATGATTTAGGAAAAATGCGGCGCTTTCAACCTATCAAGTCTATATGGGGACTTGCTAAATTTATTTCTCACAACACATTCAAAGAGGCCTCTAACGGATACCTTGTTGACGACAAATGTGTGGTTGGAGCAGAGATATTTGTCGTCCAAAGGCAAGCAATTGGTGAATGTTTGTCTATGGTGAAATCTAATGACTTGTTTAAGCGTGAATGGAACATCTGTAATTTCTCCAAGCTTGATGAAAATTGGCTTTCTGAAGAATTTACTGTGGGAGGTTACAAATGGTACTTCCTTCATCTCTTTGGGACATAGTAATTGTCTATTGTTTATAACCAATCATTTTGAATCTATTTGCTTCTGAATCCTTGTGTTGAATTCTTGTGTAGGAAGCTCTCGTTGTGTCCAAACGGCAATGGAAACAGTAAGGGATGTGATGTTTCAATATTTCTAAATTCTGTTGATGCTAAGGACTTTGATCATCATGAAAAAGTGAAGGTAAATTGCAGCATAAACCTCAAAGATCAGACAAATGGTGGATGCAAAAAGTTATCTTGTAAGGCAAATATTTACATTTTTTCAATTTCTATCAGTAGCAAATTTTTATACGGAATTCTTGCGAGATGAATATCACTATGATTCAATCTCTTTTTCATAATATTAAACTCGTTTTTGCATGTCTAATAATTTTTTTTTTTAATTTTACTTTTTACAGATTGTGTTTGGTATTCAACTACGAGAAAGAGTTGTGGTTTTCCAGGTTTTATGCCTTTAACTCAGTTGCGTGATAAGAAAAAAAGGCTATCTTGTCAAAGATTGTATTGTGGCGGAGGTTGAGCTAAAAATTGATTTTAAACATGTAAACATTCTATAGAGATAAATTTTGTCCTTCTTCCATGCCCCCTCTTTGTTATTGGAGAAGTTGTCACTGCTCATTTT</genome_strand>
        <mrna_strand>TTCATATAGTGAAGATTAGGTGCGTTTAACATGTTTATCCCGATGGGAACACTTATGAAAATGGAAGTGGACATATTTCTGTTACTTGGCCATTTCGGGGACAACTTCTCTGCCTCCTAATTGAGAA..........................................................................................................................................................................................................GAAAAATGCGGCGCTTTCAACCTATCAAGTCTATATGGGGACTTGCTAAATTTATTTCTCACAACACATTCAAAGAGGCCTCTAACGGATACCTTGTTGACGACAAATGTGTGGTTGGAGCAGAGATATTTGTCGTCCAAAGGCAAGCAATTGGTGAATGTTTGTCTATGGTGAAATCTAATGACTTGTTTAAGCGTGAATGGAACATCTGTAATTTCTCCAAGCTTGATGAAAATTGGCTTTCTGAAGAATTTACTGTGGGAGGTTACAAATG......................................................................................................GAAGCTCTCGTTGTGTCCAAACGGCAATGGAAACAGTAAGGGATGTGATGTTTCAATATTTCTAAATTCTGTTGATGCTAAGGACTTTGATCATCATGAAAAAGTGAAGGTAAATTGCAGCATAAACCTCAAAGATCAGACAAATGGTGGATGCAAAAAGTTATCTT...............................................................................................................................................................ATTGTGTTTGGTATTCAACTACGAGAAAGAGTTGTGGTTTTCCAGGTTTTATGCCTTTAACTCAGTTGCGTGATAAGAAAAAAAGGCTATCTTGTCAAAGATTGTATTGTGGCGGAGGTTGAGCTAAAAATTGATTTT-AACATGTAAACATTCTATAGAGATAAATTTTGTCCTTCTTCCATGCCCCCTCTTTGTTATTGGAGAAGTTGTCACTGCTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320817" ref_strand="+" ref_description="SGN-E320817 [cTOB-27-M8]">
      <seq>tcatatagtgaagattaggtgcgtttaacatgtttatcccgatgggaacacttatgaaaatggaagtggacatatttctgttacttggccatttcggggacaacttctctgcctcctaattgagaagaaaaatgcggcgctttcaacctatcaagtctatatggggacttgctaaatttatttctcacaacacattcaaagaggcctctaacggataccttgttgacgacaaatgtgtggttggagcagagatatttgtcgtccaaaggcaagcaattggtgaatgtttgtctatggtgaaatctaatgacttgtttaagcgtgaatggaacatctgtaatttctccaagcttgatgaaaattggctttctgaagaatttactgtgggaggttacaaatggaagctctcgttgtgtccaaacggcaatggaaacagtaaaggatgtgatgtttcaatatttctaaattctgttgatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="+" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20141" stop="21524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20441" g_stop="20566" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20567" i_stop="20768" i_length="202">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20769" g_stop="21042" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="400" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21043" i_stop="21144" i_length="102">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21145" g_stop="21224" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="480" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="+" ref_id="SGN-E320817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20441" e_stop="20566"/>
          <exon e_start="20769" e_stop="21042"/>
          <exon e_start="21145" e_stop="21224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATAGTGAAGATTAGGTGCGTTTAACATGTTTATCCCGATGGGAACACTTATGAAAATGGAAGTGGACATATTTCTGTTACTTGGCCATTTCGGGGACAACTTCTCTGCCTCCTAATTGAGAAGTCAGTGCTATATGTACCTTCTTTATGTTCAATCAACTTCGTGATAATTATCTTTCCTTGCGAGATATAATATTATTTCCCTTTTGTCTATCTCATCTAAGCCTTTTGGTTATCGTGAAATAGCATTGATAACCAGAGTGACTTTCAATTTTATTTTTTCAATTATCAACTAAAACTGTGATACAATGATGCTATGATTTAGGAAAAATGCGGCGCTTTCAACCTATCAAGTCTATATGGGGACTTGCTAAATTTATTTCTCACAACACATTCAAAGAGGCCTCTAACGGATACCTTGTTGACGACAAATGTGTGGTTGGAGCAGAGATATTTGTCGTCCAAAGGCAAGCAATTGGTGAATGTTTGTCTATGGTGAAATCTAATGACTTGTTTAAGCGTGAATGGAACATCTGTAATTTCTCCAAGCTTGATGAAAATTGGCTTTCTGAAGAATTTACTGTGGGAGGTTACAAATGGTACTTCCTTCATCTCTTTGGGACATAGTAATTGTCTATTGTTTATAACCAATCATTTTGAATCTATTTGCTTCTGAATCCTTGTGTTGAATTCTTGTGTAGGAAGCTCTCGTTGTGTCCAAACGGCAATGGAAACAGTAAGGGATGTGATGTTTCAATATTTCTAAATTCTGTTGATGCTA</genome_strand>
        <mrna_strand>TCATATAGTGAAGATTAGGTGCGTTTAACATGTTTATCCCGATGGGAACACTTATGAAAATGGAAGTGGACATATTTCTGTTACTTGGCCATTTCGGGGACAACTTCTCTGCCTCCTAATTGAGAA..........................................................................................................................................................................................................GAAAAATGCGGCGCTTTCAACCTATCAAGTCTATATGGGGACTTGCTAAATTTATTTCTCACAACACATTCAAAGAGGCCTCTAACGGATACCTTGTTGACGACAAATGTGTGGTTGGAGCAGAGATATTTGTCGTCCAAAGGCAAGCAATTGGTGAATGTTTGTCTATGGTGAAATCTAATGACTTGTTTAAGCGTGAATGGAACATCTGTAATTTCTCCAAGCTTGATGAAAATTGGCTTTCTGAAGAATTTACTGTGGGAGGTTACAAATG......................................................................................................GAAGCTCTCGTTGTGTCCAAACGGCAATGGAAACAGTAAAGGATGTGATGTTTCAATATTTCTAAATTCTGTTGATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="-" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41557" stop="40480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41257" g_stop="40780" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41257" e_stop="40780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAAAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTGTTCCTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TCGGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="+" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40632" stop="41568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40932" g_stop="41244" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40932" e_stop="41244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTTTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAGTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTACATCTAC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="-" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41558" stop="40723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41258" g_stop="41021" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41258" e_stop="41021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAAAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="+" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42982" stop="43759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43282" g_stop="43458" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43282" e_stop="43458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="+" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44058" stop="45004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44348" g_stop="44704" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44348" e_stop="44704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCATCCATGTCCT--CTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAATGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACAACACTACAAATTCGTGATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="+" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44050" stop="45323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44364" g_stop="45024" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="679" r_length="661" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44364" e_stop="45024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAATGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACAACACTACAAATTCGTGATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATTCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCTATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAG-CCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>CTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="+" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>tgtagtctatgcacattcaaaaactgccgatctttacaacaaaaccggagcaccccaaggagatgcacttggtctaatgaagcctttgttcaataactcttgaagttgtgcctttaactctcttaactctgcgggagccattctataagggggtataaaaatggggcgtgtgcccggttcgagatcaatacagaagtcaatatccctatccggtggcataccaggatgatctgcagggaacacatccataaactcacgaactactgaaactgagtcaatcgaaggtacttgggtagtgttatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatacgcaccggattggaagtgtagtcaccctcctacactaacagatctgtcccaggcttggctaacgtcacggttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcgaagtcaaccatttcttgcaaggattttgccgtagccgctacctgtaacgctgaaatccgcaactctgacctcaaccctttcacaaaacgacgaatcctctcttgtggactgaaacaaagttgagtggcatatctggatagtgcacgaaacttagcctcatatgcattgacctacatcctaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="+" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44583" stop="45847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44847" g_stop="45547" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="+" ref_id="SGN-E353359" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44847" e_stop="45547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTCTATGCACATCCGAAAACTCCTATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCC-TTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTAAATATCCCTATCTGGTGTCATACTAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTAGAAGTGTAGTCACCCTACCACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGACAAGTCATACCCAGAATTACATCGAAGTCAATCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAATGGCGAATTCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATATGTAGTAACCGACATCCTACCTTGC</genome_strand>
        <mrna_strand>TGTAGTCTATGCACATTCAAAAACTGC---CGATCTT--T-AC-AACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGATGATCTGCAGGGAACACATCCATAAACTCACGAACTACTGAAACTGAGTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTTGCAAGGATTTTGCCGTAGCCGCTACCTGTAACGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAA-TCCTCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCTACATCCTACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="+" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45150" stop="46470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45450" g_stop="46170" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45450" e_stop="46170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATTCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATATGTAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGACGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAATCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCT-TACTACTTCTTCAGTCAGTGGAGGAGTCACCGCCCTAGTATCAGAAGGGCT</genome_strand>
        <mrna_strand>GCGAA-TCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="+" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45154" stop="46419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45454" g_stop="46117" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45454" e_stop="46117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATATGTAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGACGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAATCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATT-CCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="-" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46474" stop="45321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46174" g_stop="45621" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46174" e_stop="45621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCTTCTGATACTAGGGCGGTGACTCCTCCACTGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGATTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCGTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="+" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45509" stop="46541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45809" g_stop="46241" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45809" e_stop="46241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGACGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAATCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCAGTGGAGGAGTCACCGCCCTAGTATCAGAAGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCATGACCTCTACCACGGCCTCTTATCGTTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0229H10-iaLWQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0229H10.2" temp_strand="+" temp_description="C07HBa0229H10.2  AC212640.2 htgs_phase:2 submitted_to_sgn_as:gi|167832401|gb|AC212640.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0229H10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46687" stop="47623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46987" g_stop="47323" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0229H10.2" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0229H10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46987" e_stop="47323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTTTTGTGTCGGTACGTGACACTCCACCCCCTCATATTCATTAGTCCTCTTGTGTCAGTACGTGACACTCCGATCCCCTACATCTACGTGTC-GGTTCATGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8243" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8243" e_stop="8191"/>
            <exon e_start="8103" e_stop="8041"/>
            <exon e_start="7693" e_stop="7580"/>
            <exon e_start="7493" e_stop="7328"/>
            <exon e_start="7253" e_stop="7141"/>
            <exon e_start="7046" e_stop="6909"/>
            <exon e_start="6820" e_stop="6690"/>
            <exon e_start="6601" e_stop="6536"/>
            <exon e_start="1298" e_stop="1235"/>
            <exon e_start="974" e_stop="863"/>
            <exon e_start="776" e_stop="703"/>
            <exon e_start="488" e_stop="394"/>
            <exon e_start="311" e_stop="280"/>
            <exon e_start="190" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.200" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.778" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.897" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.788" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8243" e_stop="8191" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8190" i_stop="8104" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8103" e_stop="8041" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.843">
            <gDNA_intron_boundary i_start="8040" i_stop="7694" i_length="347"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7693" e_stop="7580" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.933" acc_prob="0.963">
            <gDNA_intron_boundary i_start="7579" i_stop="7494" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7493" e_stop="7328" e_length="166"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.200">
            <gDNA_intron_boundary i_start="7327" i_stop="7254" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7253" e_stop="7141" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.810">
            <gDNA_intron_boundary i_start="7140" i_stop="7047" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7046" e_stop="6909" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.778" acc_prob="0.913">
            <gDNA_intron_boundary i_start="6908" i_stop="6821" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6820" e_stop="6690" e_length="131"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6689" i_stop="6602" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6601" e_stop="6536" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.942" acc_prob="0.919">
            <gDNA_intron_boundary i_start="6535" i_stop="1299" i_length="5237"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1298" e_stop="1235" e_length="64"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1234" i_stop="975" i_length="260"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="974" e_stop="863" e_length="112"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.934">
            <gDNA_intron_boundary i_start="862" i_stop="777" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="776" e_stop="703" e_length="74"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.972">
            <gDNA_intron_boundary i_start="702" i_stop="489" i_length="214"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="488" e_stop="394" e_length="95"/>
          </exon>
          <intron i_serial="12" don_prob="0.897" acc_prob="0.993">
            <gDNA_intron_boundary i_start="393" i_stop="312" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="311" e_stop="280" e_length="32"/>
          </exon>
          <intron i_serial="13" don_prob="0.995" acc_prob="0.788">
            <gDNA_intron_boundary i_start="279" i_stop="191" i_length="89"/>
          </intron>
          <exon e_serial="14" e_score="0.968">
            <gDNA_exon_boundary e_start="190" e_stop="1" e_length="190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8243" stop="8191"/>
              <exon start="8103" stop="8041"/>
              <exon start="7693" stop="7580"/>
              <exon start="7493" stop="7328"/>
              <exon start="7253" stop="7141"/>
              <exon start="7046" stop="6997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8225" stop="8191"/>
              <exon start="8103" stop="8041"/>
              <exon start="7693" stop="7580"/>
              <exon start="7493" stop="7328"/>
              <exon start="7253" stop="7141"/>
              <exon start="7046" stop="6997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8225" stop="8191"/>
              <exon start="8103" stop="8041"/>
              <exon start="7693" stop="7580"/>
              <exon start="7493" stop="7328"/>
              <exon start="7253" stop="7141"/>
              <exon start="7046" stop="6997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8224" stop="8191"/>
              <exon start="8103" stop="8041"/>
              <exon start="7693" stop="7580"/>
              <exon start="7493" stop="7328"/>
              <exon start="7253" stop="7141"/>
              <exon start="7046" stop="6941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7358" stop="7328"/>
              <exon start="7253" stop="7141"/>
              <exon start="7046" stop="6909"/>
              <exon start="6820" stop="6690"/>
              <exon start="6601" stop="6539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6589" stop="6536"/>
              <exon start="1298" stop="1235"/>
              <exon start="974" stop="863"/>
              <exon start="776" stop="703"/>
              <exon start="488" stop="394"/>
              <exon start="311" stop="280"/>
              <exon start="190" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6589" stop="6536"/>
              <exon start="1298" stop="1235"/>
              <exon start="974" stop="863"/>
              <exon start="776" stop="703"/>
              <exon start="488" stop="394"/>
              <exon start="311" stop="280"/>
              <exon start="190" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6589" stop="6536"/>
              <exon start="1298" stop="1235"/>
              <exon start="974" stop="863"/>
              <exon start="776" stop="703"/>
              <exon start="488" stop="394"/>
              <exon start="311" stop="280"/>
              <exon start="190" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAGAAAAGCAGTTGATTCAAATGAACGGCAGGGTCCTTGAAGCCCCAAAG : TTGAAGGTTGGTAATGGCGAAGAGGTCACTCCCTGTGACGGCAGGTGGAATTTCAAGAACAAG : CATCTTTTCAACCCTGCACGAATTGAACGCTGGGCAGTGGTCAACTTCTCTGCCAATTGTGATACAAGTCACCTTTCAAGGGAGCTTATTAGTTGCGGAAGGAGCAAAGGCATT : CATTTTGAGCGCCCACATACACTCATTGAGGAAGATCCCCAGTATAGGCGAGCTGGGCCTGTAGTTCGAGTAGAACAGATGTTTGAAGAGATAATAGCTAGACTGCCTGGCCATCCTGATTTCCTCCTCTGTGTCTTGCCAGAGCGGAAAAACTCAGAGTTATATG : GACCTTGGAAGAAAAAAAGTTTGACTGACTTGGGAATTGTTACTCAATGTATCTCTCCGTTAAAGATCACCGATCGATATCTAACAAATGTGCTTCTCAAAATTAATGCTAAG : CTTGGAGGGACCAATTCACTGTTGGCTATGGAACATACCTCTCATCTACCGCTTATTAAGGACACTCCAACAATGATCCTGGGAATGGACGTCTCTCATGGATCTCGTGTTCAATCAGATATTCCATCAATTGCTGCG : GTTGTAGGATCCTTATACTGGCCATTAATATCCAAGTATAAGGCAGTTGTGCGCAGTCAATCTCCAAAGTTGGAAATTGTAGAATCCTTATACAAGCCTTTACCAAATGGAGACGATGAAGGAATCATGAG : AGAACTACTTCTGGACTTCTATAGGACAAGTAACAGGCATAAGCCAGCTCAAATTATTGTCTTCAG : GGATGGCGTCAGCGAATCACAGTTTAGTCAAGTTCTGAACCTTGAGCTAGATCAAATGATCAAG : GCATACAAGCATCTTGGTGAGGGCGGCAACCCTAAGTTCACCTTGATCGTGGCTCAAAAGAATCACCATACAAAACTATTTCAAGCTAATGCAGTTGATAATGTACCACCAG : GTACTGTTGTAGACACAAATATTGTGCATCCTAGAAATAATGATTTTTTCATGTGTGCACATGCGGGGATGATT : GGAACAACTAAACCTGCACATTATCATGTATTGCTTGATGAGATTGGTTTCGCACCTGATGTCCTGCAAAATCTCATACATTCACTATCATATGT : GTACCAAAGGAGTACCAGCGCGACCTCTATTG : TGGCTCCTGTGCGTTATGCACACCTAGCAGCACAACAATTCGGGCAGTTTGATAAGTACGAGGACCACTCCGAAACTTTGTCAGAACAGGGAAGTGTCAAATCAATTGGGACTACTCCGGTAACCCAACTGCCCAGGCTGCACAAGAATGTCAGCGACTCAATGTTTTTCTGTTGAAAATTGTAAAGCTT</gDNA_template>
            <first_frame> Q  *  K  S  S  *  F  K  *  T  A  G  S  L  K  P  Q  S :   *  R  L  V  M  A  K  R  S  L  P  V  T  A  G  G  I  S  R  T  S :   I  F  S  T  L  H  E  L  N  A  G  Q  W  S  T  S  L  P  I  V  I  Q  V  T  F  Q  G  S  L  L  V  A  E  G  A  K  A  F :   I  L  S  A  H  I  H  S  L  R  K  I  P  S  I  G  E  L  G  L  *  F  E  *  N  R  C  L  K  R  *  *  L  D  C  L  A  I  L  I  S  S  S  V  S  C  Q  S  G  K  T  Q  S  Y  M  :  D  L  G  R  K  K  V  *  L  T  W  E  L  L  L  N  V  S  L  R  *  R  S  P  I  D  I  *  Q  M  C  F  S  K  L  M  L  S :   L  E  G  P  I  H  C  W  L  W  N  I  P  L  I  Y  R  L  L  R  T  L  Q  Q  *  S  W  E  W  T  S  L  M  D  L  V  F  N  Q  I  F  H  Q  L  L  R :   L  *  D  P  Y  T  G  H  *  Y  P  S  I  R  Q  L  C  A  V  N  L  Q  S  W  K  L  *  N  P  Y  T  S  L  Y  Q  M  E  T  M  K  E  S  *   : E  N  Y  F  W  T  S  I  G  Q  V  T  G  I  S  Q  L  K  L  L  S  S   : G  M  A  S  A  N  H  S  L  V  K  F  *  T  L  S  *  I  K  *  S  R :   H  T  S  I  L  V  R  A  A  T  L  S  S  P  *  S  W  L  K  R  I  T  I  Q  N  Y  F  K  L  M  Q  L  I  M  Y  H  Q  :  V  L  L  *  T  Q  I  L  C  I  L  E  I  M  I  F  S  C  V  H  M  R  G  *  L :   E  Q  L  N  L  H  I  I  M  Y  C  L  M  R  L  V  S  H  L  M  S  C  K  I  S  Y  I  H  Y  H  M   : C  T  K  G  V  P  A  R  P  L  L  :  W  L  L  C  V  M  H  T  *  Q  H  N  N  S  G  S  L  I  S  T  R  T  T  P  K  L  C  Q  N  R  E  V  S  N  Q  L  G  L  L  R  *  P  N  C  P  G  C  T  R  M  S  A  T  Q  C  F  S  V  E  N  C  K  A  </first_frame>
            <second_frame>  N  R  K  A  V  D  S  N  E  R  Q  G  P  *  S  P  K   : V  E  G  W  *  W  R  R  G  H  S  L  *  R  Q  V  E  F  Q  E  Q   : A  S  F  Q  P  C  T  N  *  T  L  G  S  G  Q  L  L  C  Q  L  *  Y  K  S  P  F  K  G  A  Y  *  L  R  K  E  Q  R  H   : S  F  *  A  P  T  Y  T  H  *  G  R  S  P  V  *  A  S  W  A  C  S  S  S  R  T  D  V  *  R  D  N  S  *  T  A  W  P  S  *  F  P  P  L  C  L  A  R  A  E  K  L  R  V  I  W :   T  L  E  E  K  K  F  D  *  L  G  N  C  Y  S  M  Y  L  S  V  K  D  H  R  S  I  S  N  K  C  A  S  Q  N  *  C  *   : A  W  R  D  Q  F  T  V  G  Y  G  T  Y  L  S  S  T  A  Y  *  G  H  S  N  N  D  P  G  N  G  R  L  S  W  I  S  C  S  I  R  Y  S  I  N  C  C   : G  C  R  I  L  I  L  A  I  N  I  Q  V  *  G  S  C  A  Q  S  I  S  K  V  G  N  C  R  I  L  I  Q  A  F  T  K  W  R  R  *  R  N  H  E  :  R  T  T  S  G  L  L  *  D  K  *  Q  A  *  A  S  S  N  Y  C  L  Q  :  G  W  R  Q  R  I  T  V  *  S  S  S  E  P  *  A  R  S  N  D  Q   : G  I  Q  A  S  W  *  G  R  Q  P  *  V  H  L  D  R  G  S  K  E  S  P  Y  K  T  I  S  S  *  C  S  *  *  C  T  T  R :   Y  C  C  R  H  K  Y  C  A  S  *  K  *  *  F  F  H  V  C  T  C  G  D  D   : W  N  N  *  T  C  T  L  S  C  I  A  *  *  D  W  F  R  T  *  C  P  A  K  S  H  T  F  T  I  I  C  :  V  P  K  E  Y  Q  R  D  L  Y  C :   G  S  C  A  L  C  T  P  S  S  T  T  I  R  A  V  *  *  V  R  G  P  L  R  N  F  V  R  T  G  K  C  Q  I  N  W  D  Y  S  G  N  P  T  A  Q  A  A  Q  E  C  Q  R  L  N  V  F  L  L  K  I  V  K  L </second_frame>
            <third_frame>   I  E  K  Q  L  I  Q  M  N  G  R  V  L  E  A  P  K  :  L  K  V  G  N  G  E  E  V  T  P  C  D  G  R  W  N  F  K  N  K  :  H  L  F  N  P  A  R  I  E  R  W  A  V  V  N  F  S  A  N  C  D  T  S  H  L  S  R  E  L  I  S  C  G  R  S  K  G  I  :  H  F  E  R  P  H  T  L  I  E  E  D  P  Q  Y  R  R  A  G  P  V  V  R  V  E  Q  M  F  E  E  I  I  A  R  L  P  G  H  P  D  F  L  L  C  V  L  P  E  R  K  N  S  E  L  Y   : G  P  W  K  K  K  S  L  T  D  L  G  I  V  T  Q  C  I  S  P  L  K  I  T  D  R  Y  L  T  N  V  L  L  K  I  N  A  K  :  L  G  G  T  N  S  L  L  A  M  E  H  T  S  H  L  P  L  I  K  D  T  P  T  M  I  L  G  M  D  V  S  H  G  S  R  V  Q  S  D  I  P  S  I  A  A  :  V  V  G  S  L  Y  W  P  L  I  S  K  Y  K  A  V  V  R  S  Q  S  P  K  L  E  I  V  E  S  L  Y  K  P  L  P  N  G  D  D  E  G  I  M  R :   E  L  L  L  D  F  Y  R  T  S  N  R  H  K  P  A  Q  I  I  V  F  R :   D  G  V  S  E  S  Q  F  S  Q  V  L  N  L  E  L  D  Q  M  I  K  :  A  Y  K  H  L  G  E  G  G  N  P  K  F  T  L  I  V  A  Q  K  N  H  H  T  K  L  F  Q  A  N  A  V  D  N  V  P  P   : G  T  V  V  D  T  N  I  V  H  P  R  N  N  D  F  F  M  C  A  H  A  G  M  I  :  G  T  T  K  P  A  H  Y  H  V  L  L  D  E  I  G  F  A  P  D  V  L  Q  N  L  I  H  S  L  S  Y  V :   Y  Q  R  S  T  S  A  T  S  I   : V  A  P  V  R  Y  A  H  L  A  A  Q  Q  F  G  Q  F  D  K  Y  E  D  H  S  E  T  L  S  E  Q  G  S  V  K  S  I  G  T  T  P  V  T  Q  L  P  R  L  H  K  N  V  S  D  S  M  F  F  C  *  K  L  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0229H10.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8241" stop="8191"/>
                    <exon start="8103" stop="8041"/>
                    <exon start="7693" stop="7580"/>
                    <exon start="7493" stop="7328"/>
                    <exon start="7253" stop="7141"/>
                    <exon start="7046" stop="6909"/>
                    <exon start="6820" stop="6690"/>
                    <exon start="6601" stop="6536"/>
                    <exon start="1298" stop="1235"/>
                    <exon start="974" stop="863"/>
                    <exon start="776" stop="703"/>
                    <exon start="488" stop="394"/>
                    <exon start="311" stop="280"/>
                    <exon start="190" stop="15"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEKQLIQMNGRVLEAPKLKVGNGEEVTPCDGRWNFKNKHLFNPARIERWAVVNFSANCDTSHLSRELISCGRSKGIHFERPHTLIEEDPQYRRAGPVVRVEQMFEEIIARLPGHPDFLLCVLPERKNSELYGPWKKKSLTDLGIVTQCISPLKITDRYLTNVLLKINAKLGGTNSLLAMEHTSHLPLIKDTPTMILGMDVSHGSRVQSDIPSIAAVVGSLYWPLISKYKAVVRSQSPKLEIVESLYKPLPNGDDEGIMRELLLDFYRTSNRHKPAQIIVFRDGVSESQFSQVLNLELDQMIKAYKHLGEGGNPKFTLIVAQKNHHTKLFQANAVDNVPPGTVVDTNIVHPRNNDFFMCAHAGMIGTTKPAHYHVLLDEIGFAPDVLQNLIHSLSYVYQRSTSATSIVAPVRYAHLAAQQFGQFDKYEDHSETLSEQGSVKSIGTTPVTQLPRLHKNVSDSMFFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="20440" PGL_stop="21694"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20440" e_stop="20566"/>
            <exon e_start="20769" e_stop="21042"/>
            <exon e_start="21145" e_stop="21311"/>
            <exon e_start="21471" e_stop="21694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20440" e_stop="20566" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.979">
            <gDNA_intron_boundary i_start="20567" i_stop="20768" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20769" e_stop="21042" e_length="274"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21043" i_stop="21144" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21145" e_stop="21311" e_length="167"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.976">
            <gDNA_intron_boundary i_start="21312" i_stop="21470" i_length="159"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="21471" e_stop="21694" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20440" stop="20566"/>
              <exon start="20769" stop="21042"/>
              <exon start="21145" stop="21311"/>
              <exon start="21471" stop="21694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20441" stop="20566"/>
              <exon start="20769" stop="21042"/>
              <exon start="21145" stop="21224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCATATAGTGAAGATTAGGTGCGTTTAACATGTTTATCCCGATGGGAACACTTATGAAAATGGAAGTGGACATATTTCTGTTACTTGGCCATTTCGGGGACAACTTCTCTGCCTCCTAATTGAGAA : GAAAAATGCGGCGCTTTCAACCTATCAAGTCTATATGGGGACTTGCTAAATTTATTTCTCACAACACATTCAAAGAGGCCTCTAACGGATACCTTGTTGACGACAAATGTGTGGTTGGAGCAGAGATATTTGTCGTCCAAAGGCAAGCAATTGGTGAATGTTTGTCTATGGTGAAATCTAATGACTTGTTTAAGCGTGAATGGAACATCTGTAATTTCTCCAAGCTTGATGAAAATTGGCTTTCTGAAGAATTTACTGTGGGAGGTTACAAATG : GAAGCTCTCGTTGTGTCCAAACGGCAATGGAAACAGTAAGGGATGTGATGTTTCAATATTTCTAAATTCTGTTGATGCTAAGGACTTTGATCATCATGAAAAAGTGAAGGTAAATTGCAGCATAAACCTCAAAGATCAGACAAATGGTGGATGCAAAAAGTTATCTT : ATTGTGTTTGGTATTCAACTACGAGAAAGAGTTGTGGTTTTCCAGGTTTTATGCCTTTAACTCAGTTGCGTGATAAGAAAAAAAGGCTATCTTGTCAAAGATTGTATTGTGGCGGAGGTTGAGCTAAAAATTGATTTTAAACATGTAAACATTCTATAGAGATAAATTTTGTCCTTCTTCCATGCCCCCTCTTTGTTATTGGAGAAGTTGTCACTGCTCATTTT</gDNA_template>
            <first_frame> L  I  *  *  R  L  G  A  F  N  M  F  I  P  M  G  T  L  M  K  M  E  V  D  I  F  L  L  L  G  H  F  G  D  N  F  S  A  S  *  L  R   : R  K  M  R  R  F  Q  P  I  K  S  I  W  G  L  A  K  F  I  S  H  N  T  F  K  E  A  S  N  G  Y  L  V  D  D  K  C  V  V  G  A  E  I  F  V  V  Q  R  Q  A  I  G  E  C  L  S  M  V  K  S  N  D  L  F  K  R  E  W  N  I  C  N  F  S  K  L  D  E  N  W  L  S  E  E  F  T  V  G  G  Y  K  W :   K  L  S  L  C  P  N  G  N  G  N  S  K  G  C  D  V  S  I  F  L  N  S  V  D  A  K  D  F  D  H  H  E  K  V  K  V  N  C  S  I  N  L  K  D  Q  T  N  G  G  C  K  K  L  S   : Y  C  V  W  Y  S  T  T  R  K  S  C  G  F  P  G  F  M  P  L  T  Q  L  R  D  K  K  K  R  L  S  C  Q  R  L  Y  C  G  G  G  *  A  K  N  *  F  *  T  C  K  H  S  I  E  I  N  F  V  L  L  P  C  P  L  F  V  I  G  E  V  V  T  A  H  F </first_frame>
            <second_frame>  S  Y  S  E  D  *  V  R  L  T  C  L  S  R  W  E  H  L  *  K  W  K  W  T  Y  F  C  Y  L  A  I  S  G  T  T  S  L  P  P  N  *  E  :  E  K  C  G  A  F  N  L  S  S  L  Y  G  D  L  L  N  L  F  L  T  T  H  S  K  R  P  L  T  D  T  L  L  T  T  N  V  W  L  E  Q  R  Y  L  S  S  K  G  K  Q  L  V  N  V  C  L  W  *  N  L  M  T  C  L  S  V  N  G  T  S  V  I  S  P  S  L  M  K  I  G  F  L  K  N  L  L  W  E  V  T  N   : G  S  S  R  C  V  Q  T  A  M  E  T  V  R  D  V  M  F  Q  Y  F  *  I  L  L  M  L  R  T  L  I  I  M  K  K  *  R  *  I  A  A  *  T  S  K  I  R  Q  M  V  D  A  K  S  Y  L  :  I  V  F  G  I  Q  L  R  E  R  V  V  V  F  Q  V  L  C  L  *  L  S  C  V  I  R  K  K  G  Y  L  V  K  D  C  I  V  A  E  V  E  L  K  I  D  F  K  H  V  N  I  L  *  R  *  I  L  S  F  F  H  A  P  S  L  L  L  E  K  L  S  L  L  I   </second_frame>
            <third_frame>   H  I  V  K  I  R  C  V  *  H  V  Y  P  D  G  N  T  Y  E  N  G  S  G  H  I  S  V  T  W  P  F  R  G  Q  L  L  C  L  L  I  E  K :   K  N  A  A  L  S  T  Y  Q  V  Y  M  G  T  C  *  I  Y  F  S  Q  H  I  Q  R  G  L  *  R  I  P  C  *  R  Q  M  C  G  W  S  R  D  I  C  R  P  K  A  S  N  W  *  M  F  V  Y  G  E  I  *  *  L  V  *  A  *  M  E  H  L  *  F  L  Q  A  *  *  K  L  A  F  *  R  I  Y  C  G  R  L  Q  M  :  E  A  L  V  V  S  K  R  Q  W  K  Q  *  G  M  *  C  F  N  I  S  K  F  C  *  C  *  G  L  *  S  S  *  K  S  E  G  K  L  Q  H  K  P  Q  R  S  D  K  W  W  M  Q  K  V  I  L :   L  C  L  V  F  N  Y  E  K  E  L  W  F  S  R  F  Y  A  F  N  S  V  A  *  *  E  K  K  A  I  L  S  K  I  V  L  W  R  R  L  S  *  K  L  I  L  N  M  *  T  F  Y  R  D  K  F  C  P  S  S  M  P  P  L  C  Y  W  R  S  C  H  C  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0229H10.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20560" stop="20566"/>
                    <exon start="20769" stop="21042"/>
                    <exon start="21145" stop="21311"/>
                    <exon start="21471" stop="21592"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRKMRRFQPIKSIWGLAKFISHNTFKEASNGYLVDDKCVVGAEIFVVQRQAIGECLSMVKSNDLFKREWNICNFSKLDENWLSEEFTVGGYKWKLSLCPNGNGNSKGCDVSIFLNSVDAKDFDHHEKVKVNCSINLKDQTNGGCKKLSYCVWYSTTRKSCGFPGFMPLTQLRDKKKRLSCQRLYCGGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="41258" PGL_stop="40780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41258" e_stop="40780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="41258" e_stop="40780" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41258" stop="41021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41257" stop="40780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAAAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTGTTCCTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATCGGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  M  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  *  L  *  H  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  V  P  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  G  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  R  R  C  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  K  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  D  Y  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  L  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  V  D  V  G  D  R  S  V  T  Y  R  H  K  R  T  N  E  Y  E  G  A  E  C  H  V  P  T  Q  K  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  I  M  T  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  C  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  S  G  Y  R  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0229H10.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40995" stop="40780"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMCSSCLIVECSKRAVIFDSTVTLASLHYSGYRGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40932" PGL_stop="41244"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40932" e_stop="41244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="40932" e_stop="41244" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40932" stop="41244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTTTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAGTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTACATCTAC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  A  S  T  M  S  *  S  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  F  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  H  L  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  C  H  N  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  S  P  L  V  S  V  R  D  T  P  I  P  Y  I  Y </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  S  K  Y  Y  V  I  I  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  F  C  V  G  T  *  H  S  A  P  S  Y  S  L  V  L  L  C  R  Y  V  T  L  R  S  P  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0229H10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="43282" PGL_stop="43458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43282" e_stop="43458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="43282" e_stop="43458" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43282" stop="43458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0229H10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44348" PGL_stop="46241"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44348" e_stop="46241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="44348" e_stop="46241" e_length="1894"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44348" stop="44704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44364" stop="45024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44847" stop="45547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45450" stop="46170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45454" stop="46117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45809" stop="46241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCATCCATGTCCTCTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAATGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACAACACTACAAATTCGTGATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATTCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCTATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTAAATATCCCTATCTGGTGTCATACTAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTAGAAGTGTAGTCACCCTACCACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGACAAGTCATACCCAGAATTACATCGAAGTCAATCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAATGGCGAATTCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAATGCACGAAACTTAGCCTCATATGTAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGACGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAATCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGCACTTGCTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCAGTGGAGGAGTCACCGCCCTAGTATCAGAAGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCATGACCTCTACCACGGCCTCTTATCGTTGCTCTTC</gDNA_template>
            <first_frame> V  P  S  M  S  S  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  N  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  L  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  N  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  H  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  I  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  L  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  K  Y  P  Y  L  V  S  Y  *  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  *  K  C  S  H  P  T  T  L  T  D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  E  K  D  K  S  Y  P  E  L  H  R  S  Q  S  F  L  E  R  I  L  P  *  P  L  P  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  N  G  E  F  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  Y  V  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  T  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  S  G  G  V  T  A  L  V  S  E  G  L  G  A  R  P  L  P  L  E  D  V  L  P  *  P  L  P  R  P  L  I  V  A  L  </first_frame>
            <second_frame>  F  H  P  C  P  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  M  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  T  L  Q  I  R  D  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  I  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  F  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  Y  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  C  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  M  K  K  G  D  D  T  H  R  I  R  S  V  V  T  L  P  H  *  Q  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  T  S  H  T  Q  N  Y  I  E  V  N  H  F  L  K  G  F  C  R  S  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  M  A  N  S  A  L  V  D  *  N  K  V  G  W  H  T  L  I  M  H  E  T  *  P  H  M  *  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  Q  T  I  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  A  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  Y  Q  K  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  S  L  L  F </second_frame>
            <third_frame>   S  I  H  V  L  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  *  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  P  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  Q  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  S  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  *  I  S  L  S  G  V  I  L  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  *  R  K  E  M  I  R  T  G  L  E  V  *  S  P  Y  H  T  N  R  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  R  Q  V  I  P  R  I  T  S  K  S  I  I  S  *  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  W  R  I  P  L  L  W  T  E  T  K  L  G  G  I  P  *  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  D  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  S  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  L  S  F  P  F  L  T  L  S  Y  Y  F  F  S  Q  W  R  S  H  R  P  S  I  R  R  A  R  C  S  S  S  S  S  R  G  R  P  P  M  T  S  T  T  A  S  Y  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0229H10.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44440" stop="44778"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYPSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPVHQTHERSRGIRKTKRQHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0229H10.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45964" stop="46239"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQSTKISENLIDHLWGRLGWQFLILHLLSFPFLTLSYYFFSQWRSHRPSIRRARCSSSSSRGRPPMTSTTASYRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0229H10.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45395" stop="45661"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLPVRPKSAILTSTPSQNGEFRSCGLKQSWVAYLDNARNLASYVVTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0229H10.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44979" stop="45179"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGASTRFKINTEVNIPIWCHTRKICREHIQKLTDHRNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="46174" PGL_stop="45621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46174" e_stop="45621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="46174" e_stop="45621" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46174" stop="45621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCTTCTGATACTAGGGCGGTGACTCCTCCACTGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGATTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCGTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  F  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  A  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  I  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  R  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  L  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  V  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  L  L  I  L  G  R  *  L  L  H  *  L  K  K  *  *  E  R  V  R  K  G  K  L  S  K  C  R  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  D  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0229H10.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46173" stop="45622"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPLTEEVVREGEEGETEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVVKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="46987" PGL_stop="47323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46987" e_stop="47323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="46987" e_stop="47323" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46987" stop="47323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATAATCAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTTTTGTGTCGGTACGTGACACTCCACCCCCTCATATTCATTAGTCCTCTTGTGTCAGTACGTGACACTCCGATCCCCTACATCTACGTGTCGGTTCATGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  M  S  *  S  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  F  V  S  V  R  D  T  P  P  P  H  I  H  *  S  S  C  V  S  T  *  H  S  D  P  L  H  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  C  H  N  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  H  P  L  I  F  I  S  P  L  V  S  V  R  D  T  P  I  P  Y  I  Y  V  S  V  H  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  V  I  I  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  F  C  V  G  T  *  H  S  T  P  S  Y  S  L  V  L  L  C  Q  Y  V  T  L  R  S  P  T  S  T  C  R  F  M  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0229H10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 123 chains have been computed
$ 
$ memory statistics:
$ 46256 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2102 bytes was the average size of a spliced alignment
$ 14272 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1784 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 171 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 08:31:50
-->
