<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 02:51:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329762" ref_strand="+" ref_description="SGN-U329762        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | CAF1 family ribonuclease, contains Pfam domain, PF04857: CAF1 family ribonuclease | chr1:20899271-20902087 FORWARD | Aliases: F14J16.11, F14J16_11(evalue: 8e-67, score=251) genbank/nr: gi|65736526|dbj|BAD98514.1| poly(A)-specific ribonuclease [Arabidopsis thaliana] >gi|60390594|sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN (Polyadenylate-specific ribonuclease) (AtPARN) (evalue: 3e-91, score=338)">
      <seq>cttgatgtggcacatatgtacagtaaattcattggtccactaccttcaaccgctgaggattatgtatcttcccttcagaagctctttcctaccatagtggacaccaagatactcttgaatgcaaacggtgtttttcgacagactttaaataaaagcaacacctcactatccagagcatttgtctctatctgtcctcatattgctttaggtatcaaaacatctagtttggctgatagaccgtgtgtagaagtggaggttcaagtagatgaaaaaagatcctcgaactggaactcaggagccaagcatgaagctggctatgatgcattcatgactggatgcatttttgcacaggcgtgcaatcatctaggcattgatttcaccctccatgtgcttggtggagatttagcgaaggatacaaagcttcagaattatatcaatcgcctttaccttagctgggttagtggtaacgtcattgatctaagtagtgggaaatgtacaccagactcctcagcttctagcaacctcaaaagtcggtaccaggatatctcatttcctagcatcattctgttgtggggatttccatctaaactaaaagcaagggagataaaagcttgtataacacaagcctttggcccaaatcctgtttcttctgtctaccacttggatgaaagtgctgtgtttattcagtttagcaagccagaactggtttctaagtttctagaaatgaaggaaactctaagtaggaacagtgatccaatttctgtgttgcatcctctttcaaacattctgaacggggaacacactcatgcagctacctacgatgtgtataaacaaatttgcagttcatccatctcaaagaaattatttgcagatcaggctgaagctattggtatcaaacacaaaacagtgtcttctaggggagatcgaggtaaaaagggaaaccaagaaacagaagttaggatgttcaatgagaaagcagatgatctgataagttcaccatatggctgctctggaacagatcgatcaatggagtctttttatctagatgaagttctggcaagcaaataggagtagtttatgtatcatgcatgatatgatgtatatgtagatcatttttggccatatttgtttctctgatacctacagcagcatgtatagtgagattgtgtaacacacattatcaaggatcattctaatgcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="12400" stop="10223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12184" g_stop="12181" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12180" i_stop="12100" i_length="81">
            <donor d_prob="0.844" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12099" g_stop="11829" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="275" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11828" i_stop="11462" i_length="367">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11461" g_stop="10523" g_length="939"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="1214" r_length="939" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-U329762" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1214</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12184" e_stop="12181"/>
          <exon e_start="12099" e_stop="11829"/>
          <exon e_start="11461" e_stop="10523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTAAATATTTCCTTTTTGACTTATGGAAAGGCTACATTATGTATTTCAAGTTTTGCTCAACACTTTATACAATGAATGCAGATGTGGCACATATGTACAGTAAATTCATTGGTCCACTACCTTCAACCGCTGAGGATTATGTATCTTCCCTTCAGAAGCTCTTTCCTACCATAGTGGACACCAAGATACTCTTGAATGCAAACGGTGTTTTTCGACAGACTTTAAATAAAAGCAACACCTCACTATCCAGAGCATTTGTCTCTATCTGTCCTCATATTGCTTTAGGTATCAAAACATCTAGTTTGGCTGATAGACCGTGTGTAGAAGTGGAGGTTCAAGTAGATGAAAAAAGGTTACCACCAATCCCACACTACTCTTGAGACTGAATCTACATGATGCAATTTGTTATTTCACTGCGTGCTTACCATTTCCATTTGCCCGACTGTTTCTAGCGTGGCAATTGATTTTGATCTACATCTTTTACGCACATCTTTCTTTTTCTCCTGTTGGAGTTCTGTATGCATATGACACTGTGATGTTATGTGTGTCTCAACTGTGTTTGCTTTGCATCTTGGTCTATTTGATTAGGATTGTGAAGAAAATTTTTCGCCTCTTTCAGCACTCCTATAGCATTAACCTATTGAGCCGCATCTCGATTTATAAATCAAAAAGAACAATGTGAATAATCCTTGTCACTAATTTTTTAAGTTGATTTGCAGATCCTCGAACTGGAACTCAGGAGCCAAGCATGAAGCTGGCTATGATGCATTCATGACTGGATGCATTTTTGCACAGGCGTGCAATCATCTAGGCATTGATTTCACCCTCCATGTGCTTGGTGGAGATTTAGCGAAGGATACAAAGCTTCAGAATTATATCAATCGCCTTTACCTTAGCTGGGTTAGTGGTAACGTCATTGATCTAAGTAGTGGGAAATGTACACCAGACTCCTCAGCTTCTAGCAACCTCAAAAGTCGGTACCAGGATATCTCATTTCCTAGCATCATTCTGTTGTGGGGATTTCCATCTAAACTAAAAGCAAGGGAGATAAAAGCTTGTATAACACAAGCCTTTGGCCCAAATCCTGTTTCTTCTGTCTACCACTTGGATGAAAGTGCTGTGTTTATTCAGTTTAGCAAGCCAGAACTGGTTTCTAAGTTTCTAGAAATGAAGGAAACTCTAAGTAGGAACAGTGATCCAATTTCTGTGTTGCATCCTCTTTCAAACATTCTGAACGGGGAACACACTCATGCAGCTACCTACGATGTGTATAAACAAATTTGCAGTTCATCCATCTCAAAGAAATTATTTGCAGATCAGGCTGAAGCTATTGGTATCAAACACAAAACAGTGTCTTCTAGGGGAGATCGAGGTAAAAAGGGAAACCAAGAAACAGAAGTTAGGATGTTCAATGAGAAAGCAGATGATCTGATAAGTTCACCATATGGCTGCTCTGGAACAGATCGATCAATGGAGTCTTTTTATCTAGATGAAGTTCTGGCAAGCAAATAGGAGTAGTTTATGTATCATGCATGATATGATGTATATGTAGATCATTTTTGGCCATATTTGTTTCTCTGATACCTACAGCAGCATGTATAGTGAGATTGTGTAACACACATTATCAAGGATCATTCTAATGCTTCTTCATGAACAGA</genome_strand>
        <mrna_strand>CTTG.................................................................................ATGTGGCACATATGTACAGTAAATTCATTGGTCCACTACCTTCAACCGCTGAGGATTATGTATCTTCCCTTCAGAAGCTCTTTCCTACCATAGTGGACACCAAGATACTCTTGAATGCAAACGGTGTTTTTCGACAGACTTTAAATAAAAGCAACACCTCACTATCCAGAGCATTTGTCTCTATCTGTCCTCATATTGCTTTAGGTATCAAAACATCTAGTTTGGCTGATAGACCGTGTGTAGAAGTGGAGGTTCAAGTAGATGAAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................ATCCTCGAACTGGAACTCAGGAGCCAAGCATGAAGCTGGCTATGATGCATTCATGACTGGATGCATTTTTGCACAGGCGTGCAATCATCTAGGCATTGATTTCACCCTCCATGTGCTTGGTGGAGATTTAGCGAAGGATACAAAGCTTCAGAATTATATCAATCGCCTTTACCTTAGCTGGGTTAGTGGTAACGTCATTGATCTAAGTAGTGGGAAATGTACACCAGACTCCTCAGCTTCTAGCAACCTCAAAAGTCGGTACCAGGATATCTCATTTCCTAGCATCATTCTGTTGTGGGGATTTCCATCTAAACTAAAAGCAAGGGAGATAAAAGCTTGTATAACACAAGCCTTTGGCCCAAATCCTGTTTCTTCTGTCTACCACTTGGATGAAAGTGCTGTGTTTATTCAGTTTAGCAAGCCAGAACTGGTTTCTAAGTTTCTAGAAATGAAGGAAACTCTAAGTAGGAACAGTGATCCAATTTCTGTGTTGCATCCTCTTTCAAACATTCTGAACGGGGAACACACTCATGCAGCTACCTACGATGTGTATAAACAAATTTGCAGTTCATCCATCTCAAAGAAATTATTTGCAGATCAGGCTGAAGCTATTGGTATCAAACACAAAACAGTGTCTTCTAGGGGAGATCGAGGTAAAAAGGGAAACCAAGAAACAGAAGTTAGGATGTTCAATGAGAAAGCAGATGATCTGATAAGTTCACCATATGGCTGCTCTGGAACAGATCGATCAATGGAGTCTTTTTATCTAGATGAAGTTCTGGCAAGCAAATAGGAGTAGTTTATGTATCATGCATGATATGATGTATATGTAGATCATTTTTGGCCATATTTGTTTCTCTGATACCTACAGCAGCATGTATAGTGAGATTGTGTAACACACATTATCAAGGATCATTCTAATGCTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332128" ref_strand="+" ref_description="SGN-U332128        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | CAF1 family ribonuclease, contains Pfam domain, PF04857: CAF1 family ribonuclease | chr1:20899271-20902087 FORWARD | Aliases: F14J16.11, F14J16_11(evalue: 8e-54, score=205) genbank/nr: gi|42562770|ref|NP_175983.2| CAF1 family ribonuclease [Arabidopsis thaliana](evalue: 5e-52, score=205)">
      <seq>catttattccacgctccgaccaccattttcactacgcgccggcgcacactctcatcatcttcttccttcgatattaagaatgttaccaaatcaaacttcgaatcagctctcaaggaccttcgaggtcttctacgggacgccgatttcgtagctgtagacttggaaatgaccggagtcaccagtgctccttggagagaatcattcgattacgaccggtatgatattagctacctgaaagttaaggactccgccgagaagttcgccgtcgttcagttcggcgtttgtcccttccggtgggatcctcacaagcaatccttcatcgctcatccacacaacttctacatattcccacggcaagaaattcctggtagcaaccaatcccgtgagttcctttgccagacaacatcacttgatttcttggcaaaataccagtttgatttcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="15450" stop="13701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15150" g_stop="14822" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14821" i_stop="14119" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14118" g_stop="14001" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="447" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-U332128" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15150" e_stop="14822"/>
          <exon e_start="14118" e_stop="14001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATCCCACGCTCCGACCACCATTTTCACTACGCGCCGCCGCACACTCTCATCATCTTCTTCCTTCGATATTAAGAATGTTACCAAATCAAACTTCGAATCAGCTCTCAAGGACCTTCGAGGTCTTCTACGGGACGCCGATTTCGTAGCTGTAGACTTGGAAATGACCGGAGTCACCAGTGCTCCTTGGAGAGAATCATTCGATTACGACCGGTATGATATTAGCTACCTGAAAGTTAAGGACTCCGCCGAGAAGTTCGCCGTCGTTCAGTTCGGCGTTTGTCCCTTCCGGTGGGATCCTCACAAGCAATCCTTCATCGCTCATCCGTAAGTTTTCGCTCATCCTTCTTGTGTTTTGTTCGGTGAAGCATACATAGAATCCCAATCAACTTATTTAGAACTGATCTTCTAGTGTTTCTCTGAATGATATAAAGGATAAGTATAGTTTACTGCAACTTATTTGAATTTGATGCTTAGTTAATTGATTGATGTTTTTTGTCCTAGTGAATTCTTTATGAACAAAGAAATTGATTTGTTTTTGGAAAACCGTTTATCTTAAGGAGAAGCTTATCTTAGAGCCTAGACGATGACACTGAAGCACACATTAAGTGCGACAAAACACTCGACATGTTTTGGCCCTTGCTTCAGGGCTTATGGCGCCTTTGACAATACTGTGAGAACTGTCGGCATTCCTGTTTGTCCAAGTAGGGAGCTCATGTGAGCATTCCAGTGTCGAGAGAAGGGAAAGTTTGTTTCTCTTGCTTTTGATGAAATACAAATCATCACCTGTTTAGCAGCAACATATATGTTTGACTTTGAGATGTTGCATATTGCATTTTCTGTATCAATGCTTTTTTAGGATGGTAACATATCTGCAGTGTCAATATCAAGTCCGCTCTATTTGGGTGTTCTGCTCAATACGGGCAGAGTAAATGTGTTTTTTCAAGGGGACGAGCAGCATAGGTTGTCTTTATCGGTTAATGTTACATTTTGAATTTTCAAGTCTGATACTCTTATTTCTCTTTGGCAGACACAACTTCTACATATTCCCACGGCAAGAAATTCCTGGTAGCAACCAATCCCGTGAGTTCCTTTGCCAGACAACATCACTTGATTTCTTGGCAAAATACCAGTTTGATTTCAATCTG</genome_strand>
        <mrna_strand>CATTTATTCCACGCTCCGACCACCATTTTCACTACGCGCCGGCGCACACTCTCATCATCTTCTTCCTTCGATATTAAGAATGTTACCAAATCAAACTTCGAATCAGCTCTCAAGGACCTTCGAGGTCTTCTACGGGACGCCGATTTCGTAGCTGTAGACTTGGAAATGACCGGAGTCACCAGTGCTCCTTGGAGAGAATCATTCGATTACGACCGGTATGATATTAGCTACCTGAAAGTTAAGGACTCCGCCGAGAAGTTCGCCGTCGTTCAGTTCGGCGTTTGTCCCTTCCGGTGGGATCCTCACAAGCAATCCTTCATCGCTCATCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAACTTCTACATATTCCCACGGCAAGAAATTCCTGGTAGCAACCAATCCCGTGAGTTCCTTTGCCAGACAACATCACTTGATTTCTTGGCAAAATACCAGTTTGATTTCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320989" ref_strand="+" ref_description="SGN-U320989        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: AT1G55860.1 | Symbol: None | ubiquitin-protein ligase 1 (UPL1), nearly identical to ubiquitin-protein ligase 1 (Arabidopsis thaliana) GI:7108521; E3, HECT-domain protein family; similar to GI:7108521, GB:AAF36454 from (Arabidopsis thaliana) | chr1:20883175-20899059 REVERSE | Aliases: F14J16.37 (evalue: 0, score=744) genbank/nr: gi|50401593|sp|Q8GY23|UPL1_ARATH E3 ubiquitin protein ligase UPL1 (Ubiquitin-protein ligase 1) (evalue: 0, score=744)">
      <seq>tcagcattgccatctacgttactcgctgaagcgcatatgcttcgggacagagctatgagtcattaccaagcacgcagcttgtttggaggcagccacaggcttcatggtcgtagaaatggtctgggatttgacagacagacagttatggacaggggtgtgggtgttacaattgcccggagggcttcatcctctttttcagagagtttgaagttgaaggaacttgaaggcgagccacttttagatgctcatggcttgaaagcattgatccgcctcttgcgcttagcacagcctcttgggaaaggtctgttgcaaagactcttgttgaatttgtctgctcatagcagtacaagagcagttctagtccaccttcttcttgaagctatcaagcccgagactggaggggctggtggtggtttaacaaccattaactcacagagactttatggctgtcagtcgaatattgtttatggacgatcacaattatttgatggtcttcctccactggtattgcggcggattctggagatcttaacttaccttgctaccaaccactctgcagttgccagtcttcttttctactttgatctctcgcttattccagagtggtcagatgtgaagtgtttggaaaataagagggacaaaggcaaggagaaaattgttgaagaagatccctccaatccttttagaagctctaacaagagggatattccattggttttgtttctgaagctcttgaaccagccactttttttgcgcagcatagcacatcttgaacaggtcatgggactccttcaagtagttgtctatactgctgcatccaagatggagtgtcagtctcattctgaagaaacagtagaccgttctcataatgaaacagtagagggttctaataatcctgatggcaatgaaactatgagtgatatacagaaagatcctgcgttgccagacataaagtcccctcaagatgatagcggcactggttctgccaaccctgcatctgatgccaatggaagcacaatcattcatgacatcttcttgcagctgccacattctgatttgcacaatctttgctgtcttcttggtcatgaaggactctcagataaagtttacatgcttgcgggtgaggtgttgaagaagctagcctcagttgctgctccccatcggaagttcttcatttctgaactttcagagttgactcaaaggctgagcaagtcagctgtggaagagcttatcacacttaagaatacacacatgctgggattgagcgctggatctatggctggagctgcggtccttcgtgtactacagactcttagttcactaagtacagcttctgctgatggcaatacagacacatctatggaggaagaacatgatgagcataacatcatgtggaagttaaatgttgcactagaacctttgtgggaaggcctgagtgaatgcataggcaccatggagttagagctcacccagagcacttcttcttcagttatgtcaagtaccaacactggggagcatataaatgaagccggtgcttcatctgtatcttctccattgccccctggaactcagcgtctgttaccttttattgaggctttctttgttctgtgtgagaagcttcaggcaaacatctctattatgcagcaagatcatatgaatgcaactgcaagagaagtgaaagagttagccggtacttcagtcaagttgtcctccaagtctgttggtgattcacataaaagagtagatggtgctgtaacatttgtaagatttgcggaaaagcataggcgcttgcttaacgcttttgtcaggcagaaccccggcttactggagaaatcactttgtgtgatgctgaaagccccacggctcattgattttgacaataaaagagcttattttcgctcgagaataaggcagcagcatgaacagcacctctcaggtcctctgcgaattagcgttcggcgggcttatgtgttggaggattcttataatcagttgcgtatgcgacccaatcaagacctgaaaggacggttaaatgtgcattttcaaggtgaagagggtattgatgctggtggtttgacgagagagtggtatcaattgctatcaagggtcatatttgacaaaggagctttgctgtttacgactgttgggaataatgcaactttccaacctaacccaaactctgtttatcaaactgaacatctctcatacttncaatttgtaggccgtgtggttgctaaagcactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="27005" stop="30426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27305" g_stop="27592" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27593" i_stop="27763" i_length="171">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27764" g_stop="27965" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="490" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27966" i_stop="28044" i_length="79">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28045" g_stop="28331" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="777" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28332" i_stop="28428" i_length="97">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28429" g_stop="28742" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="1091" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28743" i_stop="28877" i_length="135">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.271" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28878" g_stop="30015" g_length="1138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1092" r_stop="2229" r_length="1138" r_score="0.998"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30016" i_stop="30109" i_length="94">
            <donor d_prob="0.561" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30110" g_stop="30126" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="2230" r_stop="2246" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-U320989" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27305" e_stop="27592"/>
          <exon e_start="27764" e_stop="27965"/>
          <exon e_start="28045" e_stop="28331"/>
          <exon e_start="28429" e_stop="28742"/>
          <exon e_start="28878" e_stop="30015"/>
          <exon e_start="30110" e_stop="30126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATTGCCATCTACGTTACTCGCTGAAGCGCAAATGCTTCGGGACAGAGCTATGAGTCATTACCAAGCACGCAGCTTGTTTGGAGGCAGCCACAGGCTTCATGGTCGTAGAAATGGTCTGGGATTTGACAGACAGACAGTTATGGACAGGGGTGTGGGTGTTACAATTGCCCGGAGGGCTTCATCCTCTTTTTCAGAGAGTTTGAAGTTGAAGGAACTTGAAGGCGAGCCACTTTTAGATGCTCATGGCTTGAAAGCATTGATCCGCCTCTTGCGCTTAGCACAGGTAAATTGCTTCACATCAACCGATCAAGCACCTTTGAAATGAAAATGCTTCTGTCATCAAACAATTGGCTTGCTTCTGTAGAGTTGTAATTGACGTTGTGATGTTTTGGTTTTTATATTTTTTTGTATGCGCTCAACAACTTTAACTGAGACATTCAATATTTGTTTTCAGCCTCTTGGGAAAGGTCTGTTGCAAAGACTCTTGTTGAATTTGTCTGCTCATAGCAGTACAAGAGCAGTTCTAGTCCACCTTCTTCTTGAAGCTATCAAGCCCGAGACTGGAGGGGCTGGTGGTGGTTTAACAACCATTAACTCACAGAGACTTTATGGCTGTCAGTCGAATATTGTTTATGGACGATCACAATTATTTGATGGTATCTGTCTCTTCTTAAGTGACGTTATAGGTCTCTGTTTACATATGGTCTGTTGCTAACCATTTAAGTCATTTTCCAGGTCTTCCTCCACTGGTATTGCGGCGGATTCTGGAGATCTTAACTTACCTTGCTACCAACCACTCTGCAGTTGCCAGTCTTCTTTTCTACTTTGATCTCTCGCTTATTCCAGAGTGGTCAGATGTGAAGTGTTTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAGGTAGATTATGGTCAAATGCTTTGATGTTACTGAAATATTTAGGTCTGGCGATAGTTAATTCAGATACATTTGTTGTTTCCTTGAATGTACTGTGTAGGTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGTTGCCAGACATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACAATCATTCATGACATCTTCTTGCAGCTGCCACATTCTGATTTGCACAATCTTTGCTGTCTTCTTGGTCATGAAGGGTATTTTTCTATTTAAATTGCTGTATCTTTTCATTTCCCGTTCCTTGATTTCCCATTTTGGTTCATCTTTCTTCTTCACTTCTGAAAGACAAATGTTGTGTTGCAACTACCTGACCTCTAGTGTATGTCGTTTAGACTCTCAGATAAAGTTTACATGCTTGCGGGTGAGGTGTTGAAGAAGCTAGCCTCAGTTGCTGCTCCCCATCGGAAGTTCTTCATTTCTGAACTTTCAGAGTTGACTCAAAGGCTGAGCAAGTCAGCTGTGGAAGAGCTTATCACACTTAAGAATACACACATGCTGGGATTGAGCGCTGGATCTATGGCTGGAGCTGCGGTCCTTCGTGTACTACAGACTCTTAGTTCACTAAGTACAGCTTCTGCTGATGGCAATACAGACACATCTATGGAGGAAGAACATGATGAGCATAACATCATGTGGAAGTTAAATGTTGCACTAGAACCTTTGTGGGAAGGCCTGAGTGAATGCATAGGCACCATGGAGTTAGAGCTCACCCAGAGCACTTCTTCTTCAGTTATGTCAAGTACCAACACTGGGGAGCATATAAATGAAGCCGGTGCTTCATCTGTATCTTCTCCATTGCCCCCTGGAACTCAGCGTCTGTTACCTTTTATTGAGGCTTTCTTTGTTCTGTGTGAGAAGCTTCAGGCAAACATCTCTATTATGCAGCAAGATCATATGAATGCAACTGCAAGAGAAGTGAAAGAGTTAGCCGGTACTTCAGTCAAGTTGTCCTCCAAGTCTGTTGGTGATTCACATAAAAGAGTAGATGGTGCTGTAACATTTGTAAGATTTGCGGAAAAGCATAGGCGCTTGCTTAACGCTTTTGTCAGGCAGAACCCCGGCTTACTGGAGAAATCACTTTGTGTGATGCTGAAAGCCCCACGGCTCATTGATTTTGACAATAAAAGAGCTTATTTTCGCTCGAGAATAAGGCAGCAGCATGAACAGCACCTCTCAGGTCCTCTGCGAATTAGCGTTCGGCGGGCTTATGTGTTGGAGGATTCTTATAATCAGTTGCGTATGCGACCCAATCAAGACCTGAAAGGACGGTTAAATGTGCATTTTCAAGGTGAAGAGGGTATTGATGCTGGTGGTTTGACGAGAGAGTGGTATCAATTGCTATCAAGGGTCATATTTGACAAAGGAGCTTTGCTGTTTACGACTGTTGGGAATAATGCAACTTTCCAACCTAACCCAAACTCTGTTTATCAAACTGAACATCTCTCATACTTCAAATTTGTAGGCCGTGTGGTAGGACTTCTGGAACTAATTTTAAAATCCAAGCCATAATTTTATCCTTGTTTCACATCTTAATCTCAAGCCTTTGATGTGATACTCTTTATAGGTTGCTAAAGCACTATT</genome_strand>
        <mrna_strand>TCAGCATTGCCATCTACGTTACTCGCTGAAGCGCATATGCTTCGGGACAGAGCTATGAGTCATTACCAAGCACGCAGCTTGTTTGGAGGCAGCCACAGGCTTCATGGTCGTAGAAATGGTCTGGGATTTGACAGACAGACAGTTATGGACAGGGGTGTGGGTGTTACAATTGCCCGGAGGGCTTCATCCTCTTTTTCAGAGAGTTTGAAGTTGAAGGAACTTGAAGGCGAGCCACTTTTAGATGCTCATGGCTTGAAAGCATTGATCCGCCTCTTGCGCTTAGCACAG...........................................................................................................................................................................CCTCTTGGGAAAGGTCTGTTGCAAAGACTCTTGTTGAATTTGTCTGCTCATAGCAGTACAAGAGCAGTTCTAGTCCACCTTCTTCTTGAAGCTATCAAGCCCGAGACTGGAGGGGCTGGTGGTGGTTTAACAACCATTAACTCACAGAGACTTTATGGCTGTCAGTCGAATATTGTTTATGGACGATCACAATTATTTGATG...............................................................................GTCTTCCTCCACTGGTATTGCGGCGGATTCTGGAGATCTTAACTTACCTTGCTACCAACCACTCTGCAGTTGCCAGTCTTCTTTTCTACTTTGATCTCTCGCTTATTCCAGAGTGGTCAGATGTGAAGTGTTTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAG.................................................................................................GTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGTTGCCAGACATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACAATCATTCATGACATCTTCTTGCAGCTGCCACATTCTGATTTGCACAATCTTTGCTGTCTTCTTGGTCATGAAGG.......................................................................................................................................ACTCTCAGATAAAGTTTACATGCTTGCGGGTGAGGTGTTGAAGAAGCTAGCCTCAGTTGCTGCTCCCCATCGGAAGTTCTTCATTTCTGAACTTTCAGAGTTGACTCAAAGGCTGAGCAAGTCAGCTGTGGAAGAGCTTATCACACTTAAGAATACACACATGCTGGGATTGAGCGCTGGATCTATGGCTGGAGCTGCGGTCCTTCGTGTACTACAGACTCTTAGTTCACTAAGTACAGCTTCTGCTGATGGCAATACAGACACATCTATGGAGGAAGAACATGATGAGCATAACATCATGTGGAAGTTAAATGTTGCACTAGAACCTTTGTGGGAAGGCCTGAGTGAATGCATAGGCACCATGGAGTTAGAGCTCACCCAGAGCACTTCTTCTTCAGTTATGTCAAGTACCAACACTGGGGAGCATATAAATGAAGCCGGTGCTTCATCTGTATCTTCTCCATTGCCCCCTGGAACTCAGCGTCTGTTACCTTTTATTGAGGCTTTCTTTGTTCTGTGTGAGAAGCTTCAGGCAAACATCTCTATTATGCAGCAAGATCATATGAATGCAACTGCAAGAGAAGTGAAAGAGTTAGCCGGTACTTCAGTCAAGTTGTCCTCCAAGTCTGTTGGTGATTCACATAAAAGAGTAGATGGTGCTGTAACATTTGTAAGATTTGCGGAAAAGCATAGGCGCTTGCTTAACGCTTTTGTCAGGCAGAACCCCGGCTTACTGGAGAAATCACTTTGTGTGATGCTGAAAGCCCCACGGCTCATTGATTTTGACAATAAAAGAGCTTATTTTCGCTCGAGAATAAGGCAGCAGCATGAACAGCACCTCTCAGGTCCTCTGCGAATTAGCGTTCGGCGGGCTTATGTGTTGGAGGATTCTTATAATCAGTTGCGTATGCGACCCAATCAAGACCTGAAAGGACGGTTAAATGTGCATTTTCAAGGTGAAGAGGGTATTGATGCTGGTGGTTTGACGAGAGAGTGGTATCAATTGCTATCAAGGGTCATATTTGACAAAGGAGCTTTGCTGTTTACGACTGTTGGGAATAATGCAACTTTCCAACCTAACCCAAACTCTGTTTATCAAACTGAACATCTCTCATACTTNCAATTTGTAGGCCGTGTG..............................................................................................GTTGCTAAAGCACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344261" ref_strand="+" ref_description="SGN-U344261        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G55860.1 | Symbol: None | ubiquitin-protein ligase 1 (UPL1), nearly identical to ubiquitin-protein ligase 1 (Arabidopsis thaliana) GI:7108521; E3, HECT-domain protein family; similar to GI:7108521, GB:AAF36454 from (Arabidopsis thaliana) | chr1:20883175-20899059 REVERSE | Aliases: F14J16.37 (evalue: 4e-111, score=396) genbank/nr: gi|50401593|sp|Q8GY23|UPL1_ARATH E3 ubiquitin protein ligase UPL1 (Ubiquitin-protein ligase 1) (evalue: 3e-109, score=396)">
      <seq>taaagcactatttgacgggcagttgctggatgttcattttacccggtcattctacaaacatatccttggtgtgaaggtcacatatcatgatatagaggctgtcgatcctgattactataagaacttgaagtggatgctggagaatgatgtgagtgatataccacatttgacttttagcatggatgcagatgaggaaaaactcattctttatgagaaaacagaggttactgattatgagcttaaacctggaggaagaaatataagggtcacagaagagacaaagcacgaatatgttgatctcgttgctgaccatattctgacaaatgctattcgccctcaaataaatgcattccttgaaggtttcagtgaatcggtaccacgtgaacttatctccattttcaatgataaggagcttgcacttttgataagtggtctaccagaaattgacatggaagatctgaaggccaacactgaatatactggatataccacggcatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="29815" stop="31238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30115" g_stop="30256" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30257" i_stop="30344" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30345" g_stop="30425" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="223" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30426" i_stop="30576" i_length="151">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30577" g_stop="30802" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="449" r_length="226" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30803" i_stop="30885" i_length="83">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30886" g_stop="30938" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="502" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-U344261" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30115" e_stop="30256"/>
          <exon e_start="30345" e_stop="30425"/>
          <exon e_start="30577" e_stop="30802"/>
          <exon e_start="30886" e_stop="30938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCACTATTTGACGGGCAGTTGCTGGATGTTCATTTTACCCGGTCATTCTACAAACATATCCTTGGTGTGAAGGTCACATATCATGATATAGAGGCTGTCGATCCTGATTACTATAAGAACTTGAAGTGGATGCTGGAGGTGAGATTATATTAAGATGCAGTAATTTGTAACTGATATACAATTTCATCTATGGAACTTCTGATTGTTTCTTGATTTCCTATACCAGAATGATGTGAGTGATATACCAGATTTGACTTTTAGCATGGATGCAGATGAGGAAAAACTCATTCTTTATGAGAAAACAGAGGTCGGTATACATAATGTTTCGACCCCCCCCCCCCCCCCAAAAAAAAAGATAAAATAAAAATGAAAAAAGCTAAATGAGTAACAGCAAGTCATATATTGCTCTGTTCAGGTGATACCTAAAGTAACTTTTTTTTTAATCTTGCATGATCAAGGTTACTGATTATGAGCTTAAACCTGGAGGAAGAAATATAAGGGTCACAGAAGAGACAAAGCACGAATATGTTGATCTCGTTGCTGACCATATTCTGACAAATGCTATTCGCCCTCAAATAAATGCATTCCTTGAAGGTTTCAGTGAATTGGTACCACGTGAACTTATCTCCATTTTCAATGATAAGGAGCTTGAACTTTTGATAAGTGGTCTACCAGAAATTGACAGTAAGTAGACATGCTTCTCCACGATTGCAGTGTATACACCATGTTGTTTCCTATGAAGCTTCTTATAATGATTCTATATGCAGTGGAAGATCTGAAGGCCAACACTGAATATACTGGATATACCACGGCATCTACT</genome_strand>
        <mrna_strand>TAAAGCACTATTTGACGGGCAGTTGCTGGATGTTCATTTTACCCGGTCATTCTACAAACATATCCTTGGTGTGAAGGTCACATATCATGATATAGAGGCTGTCGATCCTGATTACTATAAGAACTTGAAGTGGATGCTGGAG........................................................................................AATGATGTGAGTGATATACCACATTTGACTTTTAGCATGGATGCAGATGAGGAAAAACTCATTCTTTATGAGAAAACAGAG.......................................................................................................................................................GTTACTGATTATGAGCTTAAACCTGGAGGAAGAAATATAAGGGTCACAGAAGAGACAAAGCACGAATATGTTGATCTCGTTGCTGACCATATTCTGACAAATGCTATTCGCCCTCAAATAAATGCATTCCTTGAAGGTTTCAGTGAATCGGTACCACGTGAACTTATCTCCATTTTCAATGATAAGGAGCTTGCACTTTTGATAAGTGGTCTACCAGAAATTGACA...................................................................................TGGAAGATCTGAAGGCCAACACTGAATATACTGGATATACCACGGCATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326625" ref_strand="+" ref_description="SGN-U326625        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT1G55860.1 | Symbol: None | ubiquitin-protein ligase 1 (UPL1), nearly identical to ubiquitin-protein ligase 1 (Arabidopsis thaliana) GI:7108521; E3, HECT-domain protein family; similar to GI:7108521, GB:AAF36454 from (Arabidopsis thaliana) | chr1:20883175-20899059 REVERSE | Aliases: F14J16.37 (evalue: 2e-50, score=196) genbank/nr: gi|50899032|ref|XP_450304.1| putative ubiquitin-protein ligase 1 [Oryza sativa (japonica cultivar-group)] >gi|47848485|dbj|BAD22340.1| putative ubiquitin-protein ligase 1 [Oryza sativa (japonica cultivar-group)] (evalue: 2e-50, score=201)">
      <seq>ggatataccacggcatctactgctattcagtggttttgggaggtcgttaaaggttttagcaaggaagacatggcaagatttcttcaatttgtgaccggcacatccaaggttcctttggagggtttcaaagcattgcaagggatctctggccctcagagatttcagattcacaaagcttatggagctcctgataggctcccatctgcacatacctgcttcaaccaacttgaccttccggagtatacttccaaagaacaacttcaagaacgtttgcttttggctatccatgaggctagtgaaggatttggttttggttgagacaagcttaccttgtgcagatttcctgaaaattgcatatatttgatcaccctgtgattgccatgtaaatactggctgatcgatatcaactgcacaagatagatttggagtggtatttcttagaaatttgagtccatgcagagcctgcctcaaggatgtgtaggtagttggccacaccactctggtcagtttagtatcttgagggtagtgagttatgcattacaagtggtgaggagctctgttattttgttgttccttccattgcgataggacactcctacagccatccccgtgtagataagtcggttctctttttgtcagggggtttagtgtaggaggtctacatttattttgggaaatgggtaggttgctaattctttcatgctttacaacctcattagttacctatggtcaccgataactcttacatcaccttataatgctatacttcacatctggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="30618" stop="33211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30918" g_stop="31025" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31026" i_stop="31463" i_length="438">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31464" g_stop="31570" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="215" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31571" i_stop="31700" i_length="130">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31701" g_stop="31873" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="388" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31874" i_stop="32520" i_length="647">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32521" g_stop="32910" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="778" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="779" polyA_stop="790"/>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-U326625" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30918" e_stop="31025"/>
          <exon e_start="31464" e_stop="31570"/>
          <exon e_start="31701" e_stop="31873"/>
          <exon e_start="32521" e_stop="32910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATACCACGGCATCTACTGCTATTCAGTGGTTTTGGGAGGTCGTTAAAGGTTTTAGCAAGGAAGACATGGCAAGATTTCTTCAATTTGTGACCGGCACATCCAAGGTTAGTAGATATCATTGTACCCACAGGTTTTTTTGTCTCATAGAGTATCTGCTAAATGGCGATATGTCTTGGAACAAACTTACAAGAATTTCTTTCTCCCTCCTTCTCCACCCTAGTAAAGATCAATTTTGTACCAGAGTCGGTTTTCCTTGAGAAAAGATCCTCTTCTCTTCGCAAACCAAATATCCAGGTGCTCAAAATTCTGTTATGTGTTGCTGAATTCTGCTAATTTGTGATTGCAGATTGATGTTTGTTACCCCAGTATATCTCATGTTCAATCATTTAAAAGAAGACTTCACTTTCCCTTTGTTTAGTGGTTCAGGATTCTGTATGCCCTTTGGTTGTTTTACATAGTATAGTGCATGCACATTCCCCTGTAAATGTCTGTGCCTTGTGGATTTCTTCGTTGTGATTAATTGTGGGTGCTGTTGGCCTTAGGTTCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGAGAGGCTCCCATCTGCACATACCTGGTTGGTGCTTGTATATCAGACTTATTATATGCTTATCAGTAGTTCACTCATAATTAAGTAGATGCCATCTGGGAGATAGTATGTAGCAAAGCTTTAGTGACCCTTACTGTCATTTGTCTTTTCCTTCCAGCTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAATGTAAGTATGTCCTCTTTTCATTTTACTTCTCTTGTTTCGCTGTAGTTGGTAACTAAAACCACTCACTTGTTCACTGCTTTGTCAAGTGATGAAAATTCTGCTCTTCAAGTCGAAATTTGTTTCCTTCACCTTCTTTAGATGAGGTTGTTATGATGGTTGTTGAGTGCTTAAATCTTGCTCTACTTTATGGCATGTGATTTGAATTTTCTGTGAGGTGTCTGCAGATTTTGGGTGTCCTATGATAAGCATGATTCTAATAAGTGATTGACGGAAATATGTGACTTTTGTTTCTGCATGTGCTCAAATATTGGCATATTCACTTCTGAAACTTCGACGAAAATATGTGACTTTTGTTTCTACATGTGCTCAAATATTGGCATATTCACGTCTGAAACTTTGACGGAAAGACCATCTGTTTTCTCATCGTCAAATTTCCCTCATTGGGCTGTGTTCTAGTTGCTCTCCTGTCCTGTATTGCTCCACTGAAGTAGTAATAACATATAATTACTGAACCATTGTCGTGCATGCCTAATTTAACATGAATGGTGGTTATCAATTTTTAAGGCTTATAATAGGTTTTCTGCTTGGTTGATTTACTGGTCAATTAACTCGAAAAATGCTGATGAGCTTCACTTTGTCTCATGCAGACTGGCTGATCGATATCAACTGCACAAGATAGATTTGGAGTGGTATTTCTTAGAAATTTGAGTCCATGCAGAGCCTGCCTCAAGGATGTGTAGGTAGTTGGCCACACCACTCTGGTCAGTTTAGTATCTTGAGGGTAGTGAGTTATGCATTACAAGTGGTGAGGAGCTCTGTTATTTTGTTGTTCCTTCCATTGCGATAGGACACTCCTACAGCCATCCCCGTGTAGATAAGTCGGTTCTCTTTTTGTCAGGGGGTTTAGTGTAGGAGGTCTACATTTATTTTGGGAAATGGGTAGGTTGCTAATTCTTTCATGCTTTACAACCTCATTAGTTACCTATGGTCACCGATAACTCTTACATCACCTTATAATGCTATACTTCACATCTGGT</genome_strand>
        <mrna_strand>GGATATACCACGGCATCTACTGCTATTCAGTGGTTTTGGGAGGTCGTTAAAGGTTTTAGCAAGGAAGACATGGCAAGATTTCTTCAATTTGTGACCGGCACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGATAGGCTCCCATCTGCACATACCTG..................................................................................................................................CTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCTGATCGATATCAACTGCACAAGATAGATTTGGAGTGGTATTTCTTAGAAATTTGAGTCCATGCAGAGCCTGCCTCAAGGATGTGTAGGTAGTTGGCCACACCACTCTGGTCAGTTTAGTATCTTGAGGGTAGTGAGTTATGCATTACAAGTGGTGAGGAGCTCTGTTATTTTGTTGTTCCTTCCATTGCGATAGGACACTCCTACAGCCATCCCCGTGTAGATAAGTCGGTTCTCTTTTTGTCAGGGGGTTTAGTGTAGGAGGTCTACATTTATTTTGGGAAATGGGTAGGTTGCTAATTCTTTCATGCTTTACAACCTCATTAGTTACCTATGGTCACCGATAACTCTTACATCACCTTATAATGCTATACTTCACATCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317786" ref_strand="+" ref_description="SGN-U317786        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | emp24/gp25L/p24 family protein, similar to SP:Q15363 Cop-coated vesicle membrane protein p24 precursor (p24A) {Homo sapiens}; contains Pfam profile PF01105: emp24/gp25L/p24 family | chr3:2455308-2456885 FORWARD | Aliases: MLP3.13(evalue: 5e-82, score=301) genbank/nr: gi|15231496|ref|NP_187425.1| emp24/gp25L/p24 family [Arabidopsis thaliana] gi|6466951|gb|AAF13086.1| putative coated vesicle membrane protein [Arabidopsis thaliana] gi|6648180|gb|AAF21178.1| putative coated vesicle membrane protein [Arabidopsis thaliana] gi|13430712|gb|AAK25978.1| putative coated vesicle membrane protein [Arabidopsis thaliana] gi|14532910|gb|AAK64137.1| putative coated vesicle membrane protein [Arabidopsis thaliana](evalue: 3e-80, score=301)">
      <seq>gaagtcaaacaaacaccacaaaaatcgtacaaatttcaaactcttgtccaaaatcccaattttttcgccaagaaaagatgagaattgggtcattgaaagtttggatcttggtgactatattggtggtggcatggagatgtggaggggtttatggaattagatttgtgattgatagagaagaatgtttttcacataaagttcaaatgggagaatcagtccatttttcgtttgttgttatcaaatcagaaggttcttggcattatagtgaagagggtgttgaccttgtggtgaagggaccttccggggagcagcttcatgattttcgtgacaaaataagtgagaagaacgagtttgtggcccatcatgaaggagtttatcgtttctgtttcaccaacaagtcaccctatcatgaaaccatagactttgatctacatgctgcccacttctcataccacgacgagcacgcaaaagatgagcatttcaaaccgttgtttgagcacattggacaactagaggaagctttatacaacattcagtttgagcagcattggctcgaggcccagacagaccgacaagcaatagtgaatgaaataatgagcaaaagagccgtctacaaagctttgctcgagtcttctgctctcattggcgttagcattctacaagtctaccttctaaagcatcttttcgaacgaaagctggggcaatccagagtttaggttttgacagaactgaagatatttatactgctgatcatctttgaacttcaaatgcattccctttatgtactgtaaaaactagaatgaacagtttttgccagagattaaagtttttatatttcctttagttgaatgttgaaagctcaataatctcaaatgaaaaattacaattccttttggaattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnnnnnnnntttttttttttctcccggggggggggggaaaaaaaaaaaaaaaaaatttttttttcaaaaacaaaaaaaaatttccggttttttggggggggccccccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="44080" stop="16816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43781" g_stop="43705" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43614" g_stop="43405" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="287" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41754" g_stop="41568" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="474" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41484" g_stop="41377" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="582" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40604" g_stop="40289" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="898" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40288" i_stop="40235" i_length="54">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.59"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40234" g_stop="40191" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="899" r_stop="941" r_length="43" r_score="0.591"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40190" i_stop="39787" i_length="404">
            <donor d_prob="1.000" d_score="0.59"/>
            <acceptor a_prob="0.182" a_score="0.48"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39786" g_stop="39727" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="942" r_stop="1001" r_length="60" r_score="0.517"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39726" i_stop="39583" i_length="144">
            <donor d_prob="0.000" d_score="0.48"/>
            <acceptor a_prob="0.040" a_score="0.51"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39582" g_stop="39486" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1002" r_stop="1098" r_length="97" r_score="0.485"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-U317786" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>1099</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43781" e_stop="43705"/>
          <exon e_start="43614" e_stop="43405"/>
          <exon e_start="41754" e_stop="41568"/>
          <exon e_start="41484" e_stop="41377"/>
          <exon e_start="40604" e_stop="40289"/>
          <exon e_start="40234" e_stop="40191"/>
          <exon e_start="39786" e_stop="39727"/>
          <exon e_start="39582" e_stop="39486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTCAAACAAACACAACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAGGTAAACCCTAGTTCTAAAAATCCAATTTTTTGATGTTTTTTTGTTCAATTTGATTTTTTTTGTGAAATTAAAACTGAGAATTAATTGCAGATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTGGTAACTAAATTACTTTAATCTAGCTGTTTGTGTTTTTTCTGTTATGTAATTTGCAGTTTTTGTGATTTCTGATGATTGTGAATGGTAAAGATTTTGTCTTTATTGAGATGAAAGGCGATAGAGTAGTTGTCGGATTAATTGTATATCTTGTTGGTGCACTGTTAATAATGGAAGTGTGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCGAATTTGTGGTGACTTTGATTTTAAGAATCATTAGACACTTGAATTATTTGAGCTTGTGAGGTATGTAATTTGCATTTTTTGTGATTTTTGCTGATCGGAAATTGTAAAGATTTCGTCTTTATTGAGATGAAAGGTGAAATAGTAGTATTGGATTTAGTTATATATATTGTTGCTTTGACTTTTGAACTAGTGTAAATAATGGAAGTGAGGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATATTTGTGGTGACTTTGAATTGTCTGAGCTTGTGAGGTATGAAATTTGCATTTTTTGTTATTTTTGCTGATTGAAAATTGTGTAAGTTTCGTCTTTATTGAGATGAAGGGTGATATAGTAGTTATCGCATTGGTTATGTATCTTGTTGCTTTGATTCTACACTGAAATAATGAAGTGCAGTTTGGAATTCAAGCTTTGTTGTTTTGTTTGCATTTAGTTGACTTTGATTATAAGATTCACTAGACACAGCTGAATTGTTCGAGCTTAGTTGTTTTGTTAGCTGGTATATAGTTGTGTAATTTGCATTTTTTTAATATGTGCTGATTGAAAATTGTAAAGATTTCATCTTTATTGAGATGAAGGTGATATAGTAGTCATCGGATTAGTTATATATATCTAGTTGTTGTGATTCATGAACTACTGTTAATAATGAATGTGAGGTTTGGAATTCAAGCTTCCTTGTTTTGGTTGCAAATTTGTGGTGACTTTGACTTTGATTTAAAGATTTATTAAACACTTGAATTGTTCGAGTTTTTTTTTTTTTCAATTTTGTGTTGACTTTGATTTTAGAATTGTTGAGAGAAACTAACAATATTTTTCTTTATTTTTACACGTCTCTTTTGTGTTTTTTGCAACTTCAATCCTTTTTGTACACATAAAATTCCATAAATTGCAATTTGGTGGAGGAATATTTATCACTTTTATTCACTTTTTTTCTTGCGGGGTGGGGGAAATTGAGTCACAACTTTGAGAATTAGAATTATATGTGCTCAATTTCAAGAAAATTTGTATCTTGGAGCTGTAAATTGATGAGCTATTTTCTAAGACCACATAAGGATTACTTCAGTCAACTGTTCTAGTCACTCCAATACGGCTTTTTACCTTATGGCCCACGGTTCAAAGCTTGGTGGATAATGGGCCCACACATCTAACCTTCTTTGGGACTTTACTTAAATAACAAGGTTTTATCTACACGAGGGTTCGAATCCATGGTGGCGCTCCACCACACATCACGTGCTGCACTCTGACTACTAGATCAAAACCTGACATTTGGCATTAGTTTTGAACTTTGTCGCAATTGGTTCTTTATGCTTTTTTCATAGGGACCATATTTTACATTCACTTCTAAAGAAGAACTGTGTGTTTTTTCTGTCTAGTGGATTGTTCAATTGATGTTGCTATGTTGGTGGAAATTAGGTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATGGTTAGCGTGTCACTTTGCTTCATCTTACTTTGTTATTAGGGGGCTCTTTACAAGATATCTTACTTTTTATTATGATACTGCAGAGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAGGTATTAGCTTTTGCATATTTCTTATATACGACTCTCCCACATTTCAGCAAATCAAATTTTTCCAACCACTTGCCATTTATCTAGTAGAAACAGTCCTTTTCTCCCTTTTGGCGTACACTTCAATGAGATAATTCTCCTTTCCCATTTTCCTCACTTTTTCACGTGATGTTCAACATAAATCCGGTGAAATGATCGTTATTGCTTCAGTTTCAGTTTGTTAAACCTAATTTTCAAATTTTTTTTCATTGTTCAATTTTACAAGATTGAGGATGCACATCTCTCCTCCATCTTGAATTATGTGAATGGTCATGAACTTTAGCACATGACCATTTAAGCCCAATATTCTTGGTAATGCTAAAGATGTGCAAGATTGTTTTATGCTATGTTGCTCGGACTCTTCAAAAATGTCGACATGTGCATTTCGGATACTCCAAAGTAGTTCATTTTGGAGAATCCTGACACAGCTGCGGCAACAATTTTGGAGAGTCCGAGCAACATAGGTTTTATGAACTTCATATGTTGTGTTTTTTGGATAATGATACGTGTATTATATATCCGTGACTTAGTTGTTTGAATATTCATATTGAGTATCACTTTTCTGTTCACTAGCAACAAGGGAATATCATTTATATGATCTGTTTCTCTTGGGTGTTGGCATCTCAATTTTATACTAATGGCAAAAGTCATGTTCACAAATCTTGCCAATTCATGATACTCTGCATGCTCCACAGCTTGTAGTTCTAATACGTTGATATCGTTTCTATTTATGCAGTGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAATTTTATTTTGTTTGGTAAATTCTGTTGAAACAACATTGATGTTGACAAACACAGTTTTGAAATAAACAAAAAACAACTACATTGGCAAACCACAACTGGCAAGTTAATAGAAACAAAAAGTTTTGACATTCAAAAATAAAATGGTTGTGCATTCATATTCAGACGTTTTAACTTGGCTTCACGAGCTCAAAACTCTAGTCTGCATCTTCAGTCATGTCTATTTCACGGAGCCTCTCTCCGAGACCATATCCATTTTTCACTTAACAAACACATAAATAGGAATATGAACTACATATAATGAGGCCTCATGAGCTCAATACACTAGGCGACGTCTATTTCAATACCATGTCCATATATTTCACCAAGCAAACACACAAATAGGAAGTTCTACGATGCATTTTCTACTTATTAGGCAAAAACAACATGATCTCATGAAATCAACAAGAAAAATTTACGGTTGAGAGGTGCTTTACAAACCACACTATGTGCTTGTCTGCTAAAGGTAAAATAAAAAGATACAACATATAGGTACAACATCAAACATTTTTGTCTTTCATATTTTGTTTCCCCAACAATATAACACAAGTTTACAAGACAAAAGGGGACTTTGAGCAATGCCTCAGTCTCCAGCACCAATCCAAAAGAAGTTGTGGGGTTTCATTATGAATATGCATCCTATATTCAGATTTTACACAACATTGTCAAGAT-TCTGCATGAGGGCTCTGCATACAGCAAAACCATTTTTTCTGCAAAACGACAAATATATTGGTGAAATTATTAATAAGAATGCTTCAAAGATTAAT</genome_strand>
        <mrna_strand>GAAGTCAAACAAACACCACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG..........................................................................................ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG...................................................................................AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAA......................................................TTTT-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNTTTTTTTTTTT................................................................................................................................................CTCCCGGGGGGGGGGGGAAAAAAAAAAAAAAAAAATTTTTTTTTCAAAAACAAAAAAAAATTTCCG-GTTTTTTGGGGGGGGCCCCCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346322" ref_strand="+" ref_description="SGN-U346322        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF05701: Plant protein of unknown function (DUF827); expression supported by MPSS | chr5:22627372-22629392 FORWARD | Aliases: MWJ3.4, MWJ3_4(evalue: 6e-22, score=78.6) genbank/nr: gi|15241071|ref|NP_200397.1| myosin heavy chain-related [Arabidopsis thaliana] gi|8843737|dbj|BAA97285.1| myosin heavy chain-like [Arabidopsis thaliana](evalue: 4e-20, score=78.6)">
      <seq>tttcaacatacacagcttttctttttttctttagctttttgtaaaactttcaaatcatctcttaattcaagattccttgtctttactgtttgaattttttctttgtttttgcttattgaaactacccatatctcaatttttcctcttttcatagtttcactaactaaatagtgttttccccttcaaaggaattgtcttttctcttcttttatactttgctattgagggtttagataaaaaaaaaaaagattgtcttttgagtgtttggggcagtttgtttttgctgtttggtttgtgggtttgtgttgattagttgaaagattgacttttttttgaagatttttggtcaaccacttttgcttatctctgagaatttgctgctttgtatcaacccttttggcctttgggagttaaaagatttgatggtttctagggtttatggatgattaggggcttttcatcatttaagtgattctgtgtaaaagattaagatatgggtttcaaaagacccgtataaacctanctggatctccaaaagtacatgttggggagatagatacaagtgcaccatttcagtctgtcaaagatgctgttaactttgtttggggagggtgcattctcaggggaaaaacctgncatcaggaaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="52103" stop="55087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52403" g_stop="52871" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52872" i_stop="54609" i_length="1738">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.905" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54610" g_stop="54784" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="646" r_length="178" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-U346322" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52403" e_stop="52871"/>
          <exon e_start="54610" e_stop="54784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACATACACAGCTTTTCTTTTTTTCTTTAGCTTTTTGTAAAACTTTCAAATCATCTCTTAATTCAAGATTCCTTGTCTTTACTGTTTGAATTTTTTTTCTTTGTTTTTGCTTATTGAAACTACCCATATCTCAATTTTTCCTCTTTTCATAGTTTCACTAACTAAATAGTGTTTTCCCCTTCAAAGGAATTGTCTTTTCTCTTCTTTTATACTTTGCTATTGAGGGTTTAGATAAAAAAAAAAAAGATTGTCTTTTGAGTGTTTGGGGCAGTTTGTTTTTGCTGTTTGGTTTGTGGGTTTGTGTTGATTAGTTGAAAGATTGACTTTTTTTTGAAGATTTTTGGTCAACCACTTTTGCTTATCTCTGAGAATTTGCTGCTTTGTATCAACCCTTTTGGCCTTTGGGAGTTAAAAGATTTGATGGTTTCTAGGGTTTATGGATGATTA-GGGCTTTTCATCATTTAGGTAAGCCCTTTTTCCTCTTTTACCCTTTTGCTTGCCTGTTATTGTTGTTGTTGTTGTATTTGTTGTTGAAGAAGGGTTAAAGTTGATGTCTTTATTAGACTCGGTGAATAGAATTTGGTTCTTGTTAGTTGTTATTATACTATTGGGTAAATTGTAATGGAGAAATGTAATGATTGTCTTTTTGAGTTGTTTTTGAATTTATTATGGGTTTCAGATTGAACATTGTCCTGTTTATTTTTATTGTGTGTATTTCTTAAGGCCTTTGAATTGTTAAGTTGTATGAGAATATGTGTATGTACACCTGCAATTTAATGCACTGAAATGGTTTGATTGCTTCCCTTTTAACAGATTTCAAATTTTGTTTACCTAAAAAAGTTGAAACGTGTTACTGTATGTGTTTATTGTGACCTTAGAGAGTGAAAATGTTTACATTCTTGGCTTAGCATACATTTTCAGGGATGTTTGTAGAGGTGTTTGTTTCTCTGTACTCACAATGGCATCTGTTTCGATCTTTTTGTTTCACTTCCGATAATGAATGACTAGGCAGCTATTCGCTACCCATAATTCTGTATACACCTAGAGAAACTTGGTTCTAGTTTGAAAATTTTCTGGATTGTATTTAATGTGTAGTTTAGTCGATTTTACATCTAAACTTAACTATATCCAGGGGAAAGTCGGATTATAACAAATTATGATTGTCCTTGCCGTGTAATGCCAAATAGAAATGGTGTGTGTTAGACCTTACAATAACTCTCGTTTAGTCTGATCTAAGCTTGTCAAGATTTGCTAGTTTATTACAACCTTAACTCTTTTTAAACAAGATGTGAAAGGGGACCTGTCACAAGAACACCTTAGTCTGTTGGCAAGCAATGAGAATTTTGATTAGGCCAATTTGATAGTTAAAATTCCTAAAGAGAGCTCCAATGAGATACTTGCATTTGTATGTCGTGGTAGAGACAACTGCTGCAATGGGATACTGACATATTTATCTTCCGCACCCTCAGATACAGCAAAGCAGAGCTCAACATAACTCTCTTTGAATATTTTTGAGTCAATAATGTTTAACATGAGTGTTTAGCTATTCACATTTGACATTTCGAGCCAATTATCTTTTTGTCATATAGGAATTATTTGAAGGTTTTAGTAGGTGAATAATTTGCTTGCAGTGGCTAGAATTGGAGGTAGAGTGATTAATTTTGAGGAATGAAGTGCATTTCATAGACATATCACCCCCTCCCCACTTTCTTTTCTTTCTGACAAGTCATGTGTACATACACTTAGTTCTCTGAGTATGACATAACATTACCATTTTTAAATGAAAGAAAAAGTCGAAAACAACCTACTCCCCTCAGTGTGACAAAAGGGAGCGTCTTTCTGTATATGTTTAGTGTGACCTTAGAGAGTGAAAATGTACATTTTTGGCTTAGCATATATTGTCAATAATGGCTGTAGAGGTTTTGCTTCCGTGCACTCAGAAAGACGTCTGTTTCTTATAATAAATGCCTAGGCAGCTATTCGCAATCCATCACTAAGATTTTCAAGTCCTTATCAAAAAAAAAAGATAAAGAATTTCAAGGAAAAGGAGGATGCTGATGTTAAATATACCTAGCTTGTATTGCATGATGACCACTTGTAAACTGGTATCTCAAGCTTCTGTGCTACTCTTATCCACAATGTTGAAATTCCGTCTGTGTTTTTGGTCACTCCCAGTAAACTTTTCTTTGCTTTTTGTTGATAGGTGATTCTGTGTAAAAGATTAAGATAT-GGTTTCAAAAGACCGTAATAAACCTA-CTGGATCTCCAAAAGTACATGTTGGGGAGATAGATACAAGTGCACCATTTCAGTCTGTCAAAGATGCTGTTAAC-TTGTTTGGGGAAGGTGCATTCTCAGGGGAAAAACCTGCAATCAGGAAG</genome_strand>
        <mrna_strand>TTTCAACATACACAGCTTTTCTTTTTTTCTTTAGCTTTTTGTAAAACTTTCAAATCATCTCTTAATTCAAGATTCCTTGTCTTTACTGTTTGAA--TTTTTTCTTTGTTTTTGCTTATTGAAACTACCCATATCTCAATTTTTCCTCTTTTCATAGTTTCACTAACTAAATAGTGTTTTCCCCTTCAAAGGAATTGTCTTTTCTCTTCTTTTATACTTTGCTATTGAGGGTTTAGATAAAAAAAAAAAAGATTGTCTTTTGAGTGTTTGGGGCAGTTTGTTTTTGCTGTTTGGTTTGTGGGTTTGTGTTGATTAGTTGAAAGATTGACTTTTTTTTGAAGATTTTTGGTCAACCACTTTTGCTTATCTCTGAGAATTTGCTGCTTTGTATCAACCCTTTTGGCCTTTGGGAGTTAAAAGATTTGATGGTTTCTAGGGTTTATGGATGATTAGGGGCTTTTCATCATTTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCTGTGTAAAAGATTAAGATATGGGTTTCAAAAGACCCGTATAAACCTANCTGGATCTCCAAAAGTACATGTTGGGGAGATAGATACAAGTGCACCATTTCAGTCTGTCAAAGATGCTGTTAACTTTGTTTGGGGAGGGTGCATTCTCAGGGGAAAAACCTGNCATCAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326829" ref_strand="+" ref_description="SGN-U326829        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT4G26620.1 | Symbol: None | sucrase-related | chr4:13427417-13429965 REVERSE | Aliases: T15N24.70, T15N24_70 (evalue: 2e-63, score=238) genbank/nr: gi|7269514|emb|CAB79517.1| sucrase-like protein [Arabidopsis thaliana] >gi|4938500|emb|CAB43858.1| sucrase-like protein [Arabidopsis thaliana] (evalue: 1e-61, score=238)">
      <seq>gaggaacttatgagtcaaaaagcttcaaactcaccgttaatggcgaacagagacgatttcataaaccctaacacttcttctcctgttactgtttccgatgccgacagcttccttctagattcttctcagatcggtagcgcttctggaagcttccagaacgagggttttctctccggtgctgatggcggcgccgccgccgctgctgatgctgagtttggtttctcccgtcctgattttcgccagacgcagcttgttggtactgttgatttctatgaacgccacgtgttcctttgctataagaatcctcaagtttggcctcctcgtattgaggctgctgagtttgatcgattgcctaggcttcttgctgctgctcttaccgctcggaagaatgatgttaagaaacagactcggttgacaatatgtgaagggcatgatggaactgagacatcgaatggggatgtgttgatctttccggacatgatcagatacaggagattgactcattttgatgttgacacatttgttgaggaagtgcttgtgaaggatggtgaatggttgcctgnaaatcctgaagctctgactggatggtacatatttgtgtgttgtcatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="62863" stop="65388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63163" g_stop="63566" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63567" i_stop="64794" i_length="1228">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64795" g_stop="64880" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="491" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64881" i_stop="64966" i_length="86">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64967" g_stop="65088" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="613" r_length="122" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-U326829" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63163" e_stop="63566"/>
          <exon e_start="64795" e_stop="64880"/>
          <exon e_start="64967" e_stop="65088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GA-GAACTTATGAGTCAAAAAGCTTCAAACTCACCGTTAATGGCGAACAGAGACGATTTCATAAACCCTAACACTTCTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAGGTTTATTCTGTTGTCATTTTTGAATTTTGTTATCTTTGCAAATCTTTGACTGCTGCTTTTGAAATGTTGAGTTATCCTGCATTGTAGAACTTTTATTAGCTTCTGGAAATGCTCATTGTTGTTGTTGCTAACCTGTTTACTTGTTTTCATTTTGTCGCACGGGGAGGGTCTTTCGGAAACAAGTCTCTGCCCCATAAAGGTAGGGGTAAGGTCTATGTATTCTCTCAAGACACCACTTGTGGGCATTACACGGCGTATGTGTTCCGTGTCATCTGTTAATAAATATCATTAATAGGCATTAAGCAGATGCAAAGTGTTACAAAATCAGAAAGTAATGTTAGCTTTAGAACAACAAAGTTGCTAAATTAGGGACAGGGAGCTAAAAGATTAAATTTTTTATTGGAGTTTGACCAATAAAAGATTAAGTCTTTTAAACCGTCTACAATCCTCTTATTCGCACTCCTACAAACTTGAACGAGGACAGTCAGACACTCAGACTAACCCCAAAGAAGAACTCTCATTAGAAAAAGCGGTCCCTTTCTTGCTTGATTCATCTTTCATCTCAGTGTCTTATCCGGATTGAATGTATGCTATCCCCCTAATGGACTAAGGGTTTTGATCGAATAATCCTGAACTTAAATTCTAGATTTCTCTTAATTTTACTGAAAGGAGAATTTGTATGAAATGGGCCTGATTAGAGTCAAATGAATACGAAGTATTTGTACAGCGAACCTTAATGTGCTTAAGGTGTGATTGGTTTGATTCAGCTTACGAGTTCAAACTTCATTTATCTAAGCTGATGCTTTCTTTCGAAAGAGGGACGTGCCTTACTGTTTTCTGTTGCTACTTTGGTATGTGTGGACCAAGTTTTTCCTGCATGTAGTGATAGAACAAAGTGCAAACTGCAAAGTTAGGTCCTACATTCTGTTCTCATAGACTTTTTGCGTTTGCAAATTTTTTTCTTTCTTATTCCTGACTAACATTCTTCCCAAGTTTCAAATTTTTCGATCCACCTCTATGATTAAATGATCAGTAACTTGCCAATGTCTAATCTTTATAGCTTTGGCTCAAGTTGAAGAGTAAATTGTTCTCGTTTGATCTCATTCTGATTGGGCTTGTGTAGTTTTTACAAATTCCCTTTCTAAAGCAAATTGCTTAGTTGGTTATGTTTTCTTTATGATCCCAGTAATATCTGTAGTGATTTACCTTCAACTTTTCTTTCGTCCAGACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACATGATCAGATACAGGTTTAAACGATGCTATACTATTCTAGTGCATCTGCAGCAGTTGATTACATATCTATTAAATGACATTGAATTTACCTATGGTGCAGGAGATTGACTCATTTTGATGTTGACACATTTGTTGAGGAGGTGCTTGTGAAGGATGGTGAATGGTTGCCTGGAAATCCTGAAGCTCTGACTGGATGGTACATATTTGTGTGTTGTCATGGTT</genome_strand>
        <mrna_strand>GAGGAACTTATGAGTCAAAAAGCTTCAAACTCACCGTTAATGGCGAACAGAGACGATTTCATAAACCCTAACACTTCTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACATGATCAGATACAG......................................................................................GAGATTGACTCATTTTGATGTTGACACATTTGTTGAGGAAGTGCTTGTGAAGGATGGTGAATGGTTGCCTGNAAATCCTGAAGCTCTGACTGGATGGTACATATTTGTGTGTTGTCATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333248" ref_strand="+" ref_description="SGN-U333248        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G26620.1 | Symbol: None | sucrase-related | chr4:13427417-13429965 REVERSE | Aliases: T15N24.70, T15N24_70 (evalue: 5e-40, score=161) genbank/nr: gi|16604384|gb|AAL24198.1| AT4g26620/T15N24_70 [Arabidopsis thaliana] gi|27363400|gb|AAO11619.1| At4g26620/T15N24_70 [Arabidopsis thaliana](evalue: 4e-38, score=161)">
      <seq>cgaaacactcacaaggaagtctccggacactggtatggctatgttacacctgatgatgtaccacagttgcttgaacagcatgttgctaaaggagagattgttgattggttgtggaggggccagatggggctatctgaagatgaacagaaagcatcccaacaacataggctcagcatttatggtggaacagatgtggacagaggcaccataaactcaaatgatgttggtattcgcacatgtggatcccaattagagggtatgggctgttgccaggcaaatggaaatgtctcatgttgtcagaccactcaaccaccagttgatgcagacaatttcaatctcaaccaagagaacgctgagtttacaaccgaaaagaagagcagcttcaagagacaagtttctcgaagtagcagtggcaaagggactcgttctcgcaaggtgtgctcaatgcctacttggtacgagagctgggagcgtgaagatacgtatgcagttcttgctgttgttggtgctgccatatcagttgcctatgccttcaactgctacagacagctgaagtaatattatttataaagaagttcacatttgatttcattgttggttaaaaacaattatgtgctttgtctaatgtaaatttaggttattgcatgtgtgtaagtcacttgcaatgaagtctagaatttgatttacttggggggataacatttatgccaaatagtgttgtaatgatagactattggttctgtaaatttaggagccttcttttgtttgcatgtttccaacacttcctggtgtctgaagtgtttgtttgatgattgaatctgttggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="64941" stop="67040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65241" g_stop="65272" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65273" i_stop="65385" i_length="113">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65386" g_stop="65469" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="116" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65470" i_stop="66028" i_length="559">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66029" g_stop="66740" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="828" r_length="712" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-U333248" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65241" e_stop="65272"/>
          <exon e_start="65386" e_stop="65469"/>
          <exon e_start="66029" e_stop="66740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACACTCACAAGGAAGTCTCCGGACACTGGTTAGGAAAAATCCTTTTGCCCCTTTTCTTTTGGAAATTGTTCTCTCAGTTGTAGGCAGTTGATGAAATTTACTTGGGTAGTTAATTATATGTTTGTTTTTGTCGTGCACTAGGTATGGCTATGTTACACCTGATGATGTACCACAGTTGCTTGAACAGCATGTTGCTAAAGGAGAGATTGTTGATTGGTTGTGGAGGTAAGTTCTCTCTCCTGTTGCTATTATAATCGCATCTTGAGAACTACGTCTCCGAGCTATATATCCCCGTGTAATTCTGGTCATGGAATAAATGAAACTTGCTTCTAGATAAATGTAACTCGTTTTTGAGCTATTATGTACTTGTCAGCTCTAAAACATTAGGAATGTTACATTAAAAATTGTGGTTAGGATGCAAGTTATGTATTGGCATTATTATGTCAATATTTGTTACCTCTTAAACGGCTTAAGTTCCATAACCCGTGCCGTGATCTTCCTATGGACCATAGCTTGTGTTTTTGGTGAATCAAAAATTTTAGATGTATTCAATGGTAACTCACTGCTTCGTGAAGTTCTGAGGGTTTAAGAACACATAATGTTAATTCAAGTTTACTCATTAATGTGATCTAAAGTACTAAAGGGGAAGTGTCCTGTAGCAACCATCCTAATTTTGTAGAGGTGAAAAATTGGGTTTTCAAGATTCATCTGTTAGCTAATCTATCTGCAGGTGCAGAAGGCGTTTTTGCATTTGTTAATCTAGAATACTAATGTCTTGTTTCAGGGGCCAGATGGGGCTATCTGAAGATGAACAGAAAGCATCCCAACAACATAGGCTCAGCATTTATGGTGGAACAGATGTGGACAGAGGCACCATAAACTCAAATGATGTTGGTATTCGCACATGTGGATCCCAATTAGAGGGTATGGGCTGTTGCCAGGCAAATGGAAATGTCTCATGTTGTCAGACCACTCAACCACCAGTTGATGCAGACAATTTCAATCTCAACCAAGAGAACGCTGAGTTTACAACCGAAAAGAAGAGCAGCTTCAAGAGACAAGTTTCTCGAAGTAGCAGTGGCAAAGGGACTCGTTCTCGCAAGGTGTGCTCAATGCCTACTTGGTACGAGAGCTGGGAGCGTGAAGATACGTATGCAGTTCTTGCTGTTGTTGGTGCTGCCATATCAGTTGCCTATGCCTTCAACTGCTACAGACAGCTGAAGTAATATTATTTATAAAGAAGTTCACATTTGATTTCATTGTTGGTTAAAAACAATTATGTGCTTTGTCTAATGTAAATTTAGGTTATTGCATGTGTGTAAGTCACTTGCAATGAAGTCTAGAATTTGATTTACTTGGGGGGATAACATTTATGCCAAATAGTGTTGTAATGATAGACTATTGGTTCTGTAAATTTAGGAGCCTTCTTTTGTTTGCATGTTTCCAACACTTCCTGGTGTCTGAAGTGTTTGTTTGATCTTTGAATCTGTTGGCTC</genome_strand>
        <mrna_strand>CGAAACACTCACAAGGAAGTCTCCGGACACTG.................................................................................................................GTATGGCTATGTTACACCTGATGATGTACCACAGTTGCTTGAACAGCATGTTGCTAAAGGAGAGATTGTTGATTGGTTGTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAGATGGGGCTATCTGAAGATGAACAGAAAGCATCCCAACAACATAGGCTCAGCATTTATGGTGGAACAGATGTGGACAGAGGCACCATAAACTCAAATGATGTTGGTATTCGCACATGTGGATCCCAATTAGAGGGTATGGGCTGTTGCCAGGCAAATGGAAATGTCTCATGTTGTCAGACCACTCAACCACCAGTTGATGCAGACAATTTCAATCTCAACCAAGAGAACGCTGAGTTTACAACCGAAAAGAAGAGCAGCTTCAAGAGACAAGTTTCTCGAAGTAGCAGTGGCAAAGGGACTCGTTCTCGCAAGGTGTGCTCAATGCCTACTTGGTACGAGAGCTGGGAGCGTGAAGATACGTATGCAGTTCTTGCTGTTGTTGGTGCTGCCATATCAGTTGCCTATGCCTTCAACTGCTACAGACAGCTGAAGTAATATTATTTATAAAGAAGTTCACATTTGATTTCATTGTTGGTTAAAAACAATTATGTGCTTTGTCTAATGTAAATTTAGGTTATTGCATGTGTGTAAGTCACTTGCAATGAAGTCTAGAATTTGATTTACTTGGGGGGATAACATTTATGCCAAATAGTGTTGTAATGATAGACTATTGGTTCTGTAAATTTAGGAGCCTTCTTTTGTTTGCATGTTTCCAACACTTCCTGGTGTCTGAAGTGTTTGTTTGATGATTGAATCTGTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318286" ref_strand="+" ref_description="SGN-U318286        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein, similar to polyphosphoinositide binding protein SEC14 homolog Ssh1p (GB:AAB94598) (Glycine max); identified in Eur J Biochem 1998 Dec 1;258(2):402-10 as AtSEC14, characterized by functional complementation in S. cerevisiae. | chr1:20877268-20879938 FORWARD | Aliases: F14J16.8, F14J16_8(evalue: 1e-136, score=483) genbank/nr: Cellular(evalue: 8e-135, score=483)">
      <seq>tttgcctaaatttaagaagatctgacaatgaagcagcaccttcaattcttgagtcactgtcctatgaggaagagggaggagagtggaaattgagaacttaaagaaaaagttgctttttttttcttcacaaaatacaacaacccctcttcctctttagacccaaaatctagggaaaaagcaagattttgaggttttttgataattttaggaggtgggtgtgaatcttttttgggtaaatttatagtgggatcaagaatggtgtgtataactgaagatatgattaagcaattgcagacttcaatggatgaaattgctgagccacttcagaaaactttccagaatgtatatcaggggtatcgaaccgagacactggtgaggtttctcaaagctagagatggcagtgtgtctaaagcacacaagatgcttgttgactgtttaaattggaggatagacaatgagatcgatcagatacttgcaaagccaattgtacccactgatttttatagaggagtgagggacactcagcttgtggggatgtctggatatacaagagagggtcttcccgtcgttgctgttggagtaggcctcagcacatacgacaaagcatcgattcactactatattcaatcacatatccaaatgaatgaataccgtgaccgtataatattgccgtctgcatcaaagaaatttgggcggtatattgggacctgtgttaaggttttggacatgactggtctaaagctttctgcgctaaaccaaattaagctcttaactgctatatctaccattgatgacctaaattatcctgagaagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctcttttacaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaagataatggattatgcatcgctaccacacttttgtaaaagagaaggctcgggttcatctaaacatggtagaaatggtacaaatgataactgtttctcctttgatcacgcttttcatcagcaactctatgattatactaagcaacaagctctagcattagaggctgtagcaccaagcaaagaaggatctgtccatgtgaccttacctgagcctgatccagatgatgcaaagattgctgaaacaattgaatccacattccatagaatgggggagaaaaacggaatttgtcaatcatttcatgaaataaagatcaatggcgattgaagctgattcgctgtagtcttggtaactgcttattttgaatccagacgagaggatttaagtaagcgttgttatagtactaatatggcttgcatcatctcgatgcaggatttagttagaagctaagttgtaacatggcatttacgctaccttggagtggactatcatatgaatagtcaaaaatgtttatgctccccacaaagtattgacgcgaatttcgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="72280" stop="66839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71980" g_stop="71671" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71568" g_stop="71540" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="339" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70495" g_stop="70412" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="423" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70311" g_stop="70258" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="477" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70134" g_stop="70057" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="555" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69924" g_stop="69871" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="609" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.549" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69741" g_stop="69682" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="669" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69594" g_stop="69499" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="765" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69498" i_stop="68440" i_length="1059">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68439" g_stop="68337" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="867" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="68258" g_stop="68178" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="948" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67681" g_stop="67139" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="949" r_stop="1490" r_length="542" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-U318286" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1492</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71980" e_stop="71671"/>
          <exon e_start="71568" e_stop="71540"/>
          <exon e_start="70495" e_stop="70412"/>
          <exon e_start="70311" e_stop="70258"/>
          <exon e_start="70134" e_stop="70057"/>
          <exon e_start="69924" e_stop="69871"/>
          <exon e_start="69741" e_stop="69682"/>
          <exon e_start="69594" e_stop="69499"/>
          <exon e_start="68439" e_stop="68337"/>
          <exon e_start="68258" e_stop="68178"/>
          <exon e_start="67681" e_stop="67139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCTAAATTTAAGAAGATCTGACAATGAAGCAGCACCTTCAATTCTTGAGTCACTGTCCTATGAGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAAGTTAGTATCTTTACTACTTATTATGATCTTGCTTGTACATTTCTTTTGAGTCTCAGCTTTTTTGAGTTTGGATCTCTAATTTTGTTGTTGTTGTTGTTGCAGTTGCTGAGCCACTTCAGAAAACTTTCCAGGTTTTGCTTCTAATTAACTCAACTTTATTTAAAATTTTGCTAAAAAAAAAGTTTCTGGATTTGATCTGTCTACTTGTTGTGATTCTTGATTTTGGTTTATTCAACAGTGGAGGTAAGTTGGTCAATGCCAAGTCAAATTTTTTTAGATTTCTTTGTTTGAGGTTTGACAAACTTGAAATTTTAGTAGGTTAGTTGGTTGACTAGCTAAACTTTCACCTTGTTGGTGGGGTCGATTCCCCACCTTGTAAATCTCATACCCCAATTTTCTTTTAGCAAACTCTAGTCTTGGAATGTTAACCAAATTGCTTTAGTTCTGCTTGCTTGGTGTGATTAATTACACAGAAGGTGCAAATGGAAATTTTCCTTGATGCTTTTTTTCTTGTGGTGGGCTAGTTATGAATCAGGATGCAACAATTTGTATTTCGTGGAGATGGATGTTCAAAGGTAGCATCTTGATGCAGAATCTGAAGTCACCTAAATGAAAATTGGTCAAAATGCAGCTAAAACTTTTCATAGATCTATTGTTTTTGAAATAAAACGCCCTTGTTCATATGTTAGAATGTATATGATCTGCAGTTGGAGAATGCTGAGCATAGTTAATCAACGAGTTACTCCGAAGACTTATATCCATAGCTAATGGTCACTGTGATGACAGTCCATCGAAGTTTTTAGCCAAAGATTGGTCTTTTACCTTGATTATAACTCTCTGTGAATAGCCAGTATCTCCCTTTATATTTATATGGGTAAAGAAAGTTACGAGTTCACGTAGCAGCAGGTGATTGCTCATATTAACACTTAGACAAATAGAAGGCTTATTATATCTGCCGTCAAAACTTAAATTAGTGAAGTGGCTGAACAAAATAAGACGAGCTAAGCATCTTGGCATGTGCAATAGTTAGATACTGAATAAAAGCTTGGCTATTTCATTGCTCAATGTTAATTAGAGGTTTTGAGGAATAAAAATAGAGATCCTTATTAGTGATGTTTCGTGAACCTATAACTATGTTATGACCGTACGTATATGATGTCTCAAATTTTGTGCAGAATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATGGTAAGTGCATACAGTTTTCATTCACATTTGAAGCTCAATATTGCTTCAGGATGAATATTGCACCGAGGAAATATTCTTAACTGTAATCAGCACTTTGCAGCTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCAGTAAGTTTTCTCTTATCATAGAATATTTGAATGGATAACCTTTAGTTAAGTCACAAATAGTAAAGAAATGAAGGCGAATTCCACCTTTACTATGTGGCTGATATTTGTCATTTATTGTTGCAGAAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAGGTAATACTTTGATCTGATTATATAATTATCATTGATTAGCTCTCTTCTCATTCGGGTTTATGCAACTTTTGGCGTTGTGCTTGGCCAATATAATCTTATTGTGTGGTTTCTACTTGGTTTTAATGTGTGCAGGGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCGGTAAGGGTCATTAGGTTGGGTTATTTAGCCCTGTTAACAAGTCAATTCAGCTGCTCAAACATCTTTTTTTTTTTCATTTGTCTCATACAGGCGGCATTAAAATACTGACATAGTGTTTTTCTATTGTAGATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTGGTATGTCCTTGTGTTTGTTCATTCAAATAGGAGATAAATACGAAAAAAATATCCTATGATGTTGACTGGCTGATGTTCATGTTACAGCCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAGGTATCTCGTTATTTGTTTGACATTGTAATTATACTTCATCGACCTTCCTACCAAAATCCTACTGTGTAAATCCTTATCATCTTTTTTCTAGTCAACATTCTTCTTGGATGTATAGATTCACTTATTTCGCTGAAAATCTTTGGTTCTGCATTCGTCGTCCACACTAATAGTTCTTGTTAAAGTTTTGAAATGATGTTCAATTGTCACTTTCTCCAAATAGAGATAAAGTTTTAAGTTTTCGGAGTTAAAAAGACTCTTTTGAGTGCATTTGTTCATTCACTAATTACTGCTATTTACAAAATTTGAACTTTTGATTATTGATCATCAATTACTCAAACAACATAAAAATAGCATATATTGGAGCGCCAAGAGAAGTTCTTGGGTGGTACTGGAGATAGAAAGTAACCTGCATCAGACATATAGATATAGAAAGGATATGGATGAAAAAATAGTCACAAGGACGAGAACAACAGGAGTTATAGGCTTATAGCAACTAGAAGCTCAAATGAGATGGTGCAATAATAGTGATTGAAGTGATAAAAGGGGGATGAGTAAAACTAAAATTGCATTGAGAGAAGACATTTCGAAAGATGTATGATATCTCAACATCAATGCACACTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCA-TGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCTCTTAATTCTCAATTTGCAGATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCCAGACGAGAGGATTTAAGTAAGCGTTGTTATAGTACTAATATGGCTTGCATCATCTCGATGCAGGATTTAGTTAGAAGCTAAGTTGTAACATGGCATTTACGCTACCTTGGAGTGGACTATCATATGAATAGTCAAAAATGTTTATGCTCCCCACAAAGTATTTTACGCGAATTTCGCTGA</genome_strand>
        <mrna_strand>TTTGCCTAAATTTAAGAAGATCTGACAATGAAGCAGCACCTTCAATTCTTGAGTCACTGTCCTATGAGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA......................................................................................................TTGCTGAGCCACTTCAGAAAACTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG....................................................................................................CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA...........................................................................................................................AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG....................................................................................................................................GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG.................................................................................................................................ATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG.......................................................................................CCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTAACTGCTATATCTACCATTGATGA-CCTAAATTAT-CCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCCAGACGAGAGGATTTAAGTAAGCGTTGTTATAGTACTAATATGGCTTGCATCATCTCGATGCAGGATTTAGTTAGAAGCTAAGTTGTAACATGGCATTTACGCTACCTTGGAGTGGACTATCATATGAATAGTCAAAAATGTTTATGCTCCCCACAAAGTA-TTGACGCGAATTTCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336460" ref_strand="+" ref_description="SGN-U336460        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein, similar to polyphosphoinositide binding protein SEC14 homolog Ssh1p (GB:AAB94598) (Glycine max); identified in Eur J Biochem 1998 Dec 1;258(2):402-10 as AtSEC14, characterized by functional complementation in S. cerevisiae. | chr1:20877268-20879938 FORWARD | Aliases: F14J16.8, F14J16_8(evalue: 6e-61, score=231) genbank/nr: Cellular(evalue: 6e-59, score=231)">
      <seq>cttatactaaaaacatagcagaatggaagaaaagatctatacaggtgatccaactagttaagaaacttatgtttttcaagagtctttttggtcttgttaatacttagatgtggatgtggcattcacccgaggcctggtggctataacaaggtggtgtctagcccaatttgtgtgtgcctcgataattccaccgaatattttctacctcgcaccaacataggcgttgaataaataactaccgaaggcttaggcaggaagaaaaatagttattagtttgttgtagaaaacaaatcatttgttactggaatcaaaatgaatgtagagtatcatatagctgattccaattactttgggattgagacatttgattgatattgattattgaaatgatttattcattcatcttttttaaacttgacattttgtttattcctcttgtagctcttaactgctatatctaccattgatgacctaaattatcctgagaagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctcttttacaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaagataatggattatgcatcgctaccacacttttgtaaaagagaaggctcgggttcatctaaacatggtagaaatggtacaaatgataactgtttctcctttgatcacgcttttcatcagcaactctatgattatactaagcaacaagctctagcattagaggctgtagcaccaagcaaagaaggatctgtccatgtgaccctacctgagcctgatccaaatgatgcaaagattgctgaaacaattgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="69180" stop="67134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68880" g_stop="68337" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68258" g_stop="68178" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="624" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67681" g_stop="67434" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="872" r_length="248" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-U336460" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68880" e_stop="68337"/>
          <exon e_start="68258" e_stop="68178"/>
          <exon e_start="67681" e_stop="67434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCA-TGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCTCTTAATTCTCAATTTGCAGATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATC</genome_strand>
        <mrna_strand>CTTATACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCATTGATGA-CCTAAATTAT-CCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCCTACCTGAGCCTGATCCAAATGATGCAAAGATTGCTGAAACAATTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336461" ref_strand="+" ref_description="SGN-U336461        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative, similar to polyphosphoinositide binding protein SEC14 homolog Ssh1p (GI:2739044) {Glycine max} | chr5:19351523-19354327 REVERSE | Aliases: MCA23.5, MCA23_5(evalue: 2e-18, score=90.1) genbank/nr: gi|15238794|ref|NP_199584.1| sec14 cytosolic factor, putative (phosphoglyceride transfer protein, putative) [Arabidopsis thaliana] gi|10177909|dbj|BAB11320.1| gene_id:MCA23.5~pir||T05949~strong similarity to unknown protein [Arabidopsis thaliana](evalue: 2e-16, score=90.1)">
      <seq>aagacagatacatattacattgttaatgctccatacatattctcagcctgctggaaggttgtgagacctcttttacaagaaagaactaaaaagaaagtccaagtgctctccggctcgggaaaagatgaactgttgaaggtaagatgtcttttttcttttgagtggaaggatcaaatacaccagctgaactatcaccaaatgtttatcaaaacacacctcaactattagtttttccattatcacacccaaaccaagtaggaaaagggaaaaacttctagttgagtgtgtgtttcgatacacaattaatgatagttcagctagaaaggtagtttaggtatggaactcgaaaagtggaattcttcatttgtgtttttgacccttccaacaatttttttcttattatgagttatcaaaggtaagatgatgttctttaagtcgattgccttttatccgttgattctctcacttcaggagaggcttactgttgcagatgaactcaatactattctttgtagtttgtagaatccatctgtattcgcattaataatgtttggtcatatacctcgtgtttctgaggaatactatacttgacttcaaatctaactagaattatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="68693" stop="67401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68393" g_stop="68337" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68258" g_stop="67701" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="615" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-U336461" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68393" e_stop="68337"/>
          <exon e_start="68258" e_stop="67701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAGGTTCGTGTCTAACTTGTAATTATGCACGAGTCTTGCTGAATCAGTTAACCTAAAGCCTAACTATGTACAAACTAGCAGGTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCT</genome_strand>
        <mrna_strand>AAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG..............................................................................GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTGTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315426" ref_strand="+" ref_description="SGN-U315426        Tomato 200607 #1 [23 ESTs aligned] arabidopsis/peptide: AT5G47750.1 | Symbol: None | protein kinase, putative, similar to protein kinase G11A (Oryza sativa) SWISS-PROT:P47997 | chr5:19356929-19359582 REVERSE | Aliases: MCA23.7, MCA23_7 (evalue: 0, score=773) genbank/nr: gi|15238798|ref|NP_199586.1| protein kinase, putative [Arabidopsis thaliana] gi|421843|pir||JN0505 protein kinase (EC 2.7.1.37) 5 - Arabidopsis thaliana gi|217861|dbj|BAA01715.1| serine/threonine protein kinase [Arabidopsis thaliana] gi|10177911|dbj|BAB11322.1| protein kinase (EC 2.7.1.37) 5 [Arabidopsis thaliana] gi|15809919|gb|AAL06887.1| AT5g47750/MCA23_7 [Arabidopsis thaliana] gi|21360567|gb|AAM47480.1| AT5g47750/MCA23_7 [Arabidopsis thaliana](evalue: 0, score=773)">
      <seq>gttcttatcttcttttatgtggtgtttgactgctctttaatgtctacattttaatgttttgctttgttttaggttcctgtttcctggaggaaaaaaagggatttggttgtttttgaggaactttctatgttgttgatggagcagcttatgttggtgtgtttttctaataagaaggggattaatggcttaagcttggagtccgagtgatgggtttggtaagcacagtgtattgaggtatcaatattcatttctatggcctcgacaccttcttccaagagtttagccgaaaagctgaacaagacaactggaaatcagacaacagaacggagttctcgcaggtctacaccttcccaagttccaaaaaataacaaattagagaccacgatttctaaagaacgagaagttgtatcgaaacagcttgtggtagaatcaactgtcacccaaaagtcgcagagcagtcaacctaagggatcttccaactcacttgctgataaattcgattcaaacttatatttgggcaattctaagaattcagctagtggagtaggttctatgcctacagagacaaaaggctcacaagggacagctgatcaggaaagaaagaattctactaaggacagctcagcatcagccaaagttagtgatggggctagcagtattgcaaaaacaagtggaagtgccaaaattagtgatcgagcagattttcttgagagtggtaagagcagcatctgtagggggagcacaggaactgacgtaagtgaggagagtacttctagcagcttgagcagcagcgttaacaaaccccacaaagctaatgactcaagatgggaagccattcaagctatccggactaaagatggggcattggatttgaggcacttccggttgctgaagaagttgggaagtggtgatattggaagtgtgtatctgtctgagttgtgtggaacaaagtgttattttgccatgaaagttatggataaggcgtcgttagctagtcgtaagaaattgcttcgtgcacagacagaaagagagattttgcagtccctggaccatccatttctcccaacattatatagccattttgaaacagaaaagttctcatgtctagtgatggagttctgcccaggaggagacctgcacacactcagacaaagacaaccagggaagcatttttcagaacaagcggtgaaattctacgtagcagaagtgctcctttccctggaataccttcacatgcttggcattgtctatcgtgatctcaagccagaaaatgtgcttgtcagagaagatggacatataatgctctctgattttgacctctcccttcgctgtgctgtcagtccaacactagtcaagtcatcatctcttgaaggtgagccactgcgcaagaattcagcttattgtgtgcagccagcatgcatcgagccctcttgtattcagccatcctgtgctgttactactacatgtttcgggcctcgcctcttttccagcaagtcaaagaaagaaaagaaatctaaaaatgaaataggtaaccaagttagcccattaccagagcttattgctgagcctactggagcacggtcaatgtcatttgtcgggactcacgagtacttagcacccgagataatcaaaggtgaaggacacggcagtgcagtagactggtggacctttggtatctttctatatgagttactgtttggcaaaacacccttcaagggatcaggaaatcgacaaactcttttcaacgttgttggtcagcccttgcggtttccagaatctccagtggtcagtttctcagctagagatcttatccgaggcttgctcgtgaaggagcctcagcatagactggcatacaaaagaggagccacagaaatcaagcaacatcctttctttgaaggtgtaaattgggctttgatacgctgcgcgagccctcctgagatcccaaggcctgtggaattcgagagaatttcagttccaccagcagcatcaaccagtgagaaaggtgtagctggaactgttccttaccagaagaattcagacaactatcttgagtttgatttcttctaatctattttttatatatctttttttccgtcgaggcgatattggctgttcatcttcacaaattgaaacataggaaggctgtacaacatttggaagatgttatgtgaaggtttgattagtttgatgatcatattattgttttgagttgtaattcaacagttgaaaatttgttgcatgccaaaacactacaagtttgatgctaccaatcgataatgtgaatttgttagtttatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="86950" stop="16816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86650" g_stop="86534" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86533" i_stop="86137" i_length="397">
            <donor d_prob="0.312" d_score="1.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86136" g_stop="85064" g_length="1073"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="1190" r_length="1073" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83009" g_stop="81902" g_length="1108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1191" r_stop="2298" r_length="1108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81901" i_stop="80451" i_length="1451">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80450" g_stop="80433" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="2299" r_stop="2316" r_length="18" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-U315426" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86650" e_stop="86534"/>
          <exon e_start="86136" e_stop="85064"/>
          <exon e_start="83009" e_stop="81902"/>
          <exon e_start="80450" e_stop="80433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTATCTTCTTCTATGTGGTGTTTGAGTGCTCTTTAATGTCTACATTTTAATGTTTTGCTTTGTTTTAGGTTCCTGTTTCCTGGAGGAAAAAAAGGGATTTGGTTGTTTTTGAGGTAAATGTTTGAGACATTAGGTGTCTTGGACCTTTAATCGTTGCTTAGTAATAATGATCTGCTATCTGTTGCTTGATTTTTGTTGGATTTGTCTACTAAATGAATGTTGATTTTTGACCTTGTGGAGTTTGGTTTCATCATTTCAACCCCTTTGTGTGTTCAGATCTTTTACTTTCTATTTTTCCCTTGCTTAATGATTTCAAGTTCTGCTTCTTTTTGTCTTTTTGAAATAGTGCCATCTTTTGTTGTTTTATAGTTCTATTACTTCAAGTTTGGAACTTTTGACTGTGATAGTGCGGTTGAGTTGTGTTTTTATGATTTTCGTGTTCCAATTTAGGAACTTTTGACTGTAATTACGCGGTAGGCTGTGTTTTTATGGTTTCTTGTTTCAATTTAGGAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAAGTATGATACTTGATCTCTGACCTTACTGTCTTAAGATAGCTTGCTCTTCTTTCTTTTAAAAAAGTTGGCATATTTTGTTGCTTTCAGTCTGGAGTATTATTTTCACAATTTACAGCATTGACTGTATCTTTAACTGTTAGATCTAGATATGTTTTTGTTGTGGCTGTAGACATAATTAATCCAACATTATCCATTATTTCTTAATTTAAATTAATTGATCTAACAGATATACTTATAACAATCAAGAGATATAAATGCCTTTACATGACATGATTTTCTTGGTGGTACCAATAAATTAAATTGAAGCAAACTGACTTGATATGCAAGTTCTTTCAAGTCCCTAAAGCAGTCGGATTGCATGTACTAACCAGTTATATCATTTACCTCTGGACAATGAAATGCATGTTGACCCCACTGTTAGTTCAAAAACCTTGTTATTTGATATTCTGACTTTATTATTTGCGCAGTAGTTTAGATTCTAAATCTTAACTACTTTTGGGATCATTTGCCTAGTTTTTTTCTTCCATAGGTGGTTTCATTTGCTTGTGTTTTTCTTACTAAGCCAAGTGGATGTTTAAACTGGTTTATATTCTTCTTCTGTGTTGGATCTATACGAAGTTGTTTTGGGTCTCTGTTGCCTACTGCATGTTCTTCTTGTCAATTATTTCCAATTCGATAGCTGCAAGTTAGTGTGACCACTACTTTAATTGGACATGATAAATGCTGTTTATTTTACTTTTAAGGTTTGGTGCCTGCAGGGTCATAACATATTTTTTGTAGTCATTAAGATACTGTTTGTTGTGTGGTCCTGTAGTTGGGGTAATCAGCTAATGTGCAGGCTGGTGTTTTTCTCTTTTTGGCAAATGAATCCTTCAGTTTAGTAGTCATCCACCTAATTTTAAATATTAAGAAACATTATTGATTTGTTGGTTGGTGTTGGATTATTGAGAGACTGATTAATTCTCACTTTGACTCATTCCTGTGACCTCCTTTCATTTTGTCATTTGCTTTAAAACATTGACCTCTTTAGTGTAATGGGGAACTTTTATTTGGTGAAGTTAATAGTTGTAACAGAAATATTTACTTTGTCAAAAATATTAGATTCAATTGTATGTGACATCTTAAAATTTTCCTGGCTGTTCTGCTATTAATTTGATATCTCTAGCAAACTCTTATTATAACCCATCCAACTGTATTTTCAATGTCTGCATAACTCAAATTCGACTAGTTTATACAAGACGGAGGAAGCATCTAAATAACCAGATCTAGGGCAAGTGTTGTGTTCCCCTTCCCTAGAATAAATGGGGAAAATGTTGAAACCCAAATAAGGGATGATACTTTGGACCAGTGAAAAGGTTGTCACCGTCGGACTAAACCATTACCATTCAGTAATACTCTTTTTTTTGGGTGGTGGTGGTGGTGGTGGGTGGGAGACACCTTTCTGGCAACGTCTTTGTTTGATGATTCTTGCCCGTCTCCCTAGTCACTGGAATCATGAAAGCTGTAACCAGCTCTTCAATTTTGTTGGCAGTTCTCTCTTCCTTGCAATTAAAATCTTCCCACCTTGCACCCAAGGGTGTGGCCTAGTGGTCAATAAAGTGGGTTGAGAACCATGTGGTCTCTGGTTCAAAACCAATTGGAAGCAAAAAAACTAGCAGGTTTGTTCTCATCTGTTCAAGCCTTGATAGACAGTTTATCTGTTGGCTGTGCTAGTGGGAGGGGTCTAAAAAATTGCATACCATGCATATGAAGAAAGTTTTAAATTAGTGTATTCATACTTGTTTCTTGACATGATTTGAATGGGATGTTGCATTATTTCGGAATATATGAAGTATCATAAATATTTGTGTATTTTTCTTTGGAGTTGAATAGTAGATATAAGCCTTCGGTTGCTTGTGCTAAAACTCCAATGAAGAAAGCAGGAAGAAATTATCAGGATTTTCATTTCTGCTATCTGCCTTTACTCAATTCCAAACTCATGAACGAAAAGTATACTATGTTGGTGGCTGCAGTTTATTGATTTGCTTGTGTTGTATTGTATCTTAAAATTGCAGATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATGAAATAGGTAACCAAGTTAGCCCATTACCAGAGCTTATTGCTGAGCCTACTGGAGCACGGTCAATGTCATTTGTCGGGACTCACGAGTACTTAGCACCCGAGATAATCAAAGGTGAAGGACACGGCAGTGCAGTAGACTGGTGGACCTTTGGTATCTTTCTATATGAGTTACTGTTTGGCAAAACACCCTTCAAGGGATCAGGAAATCGACAAACTCTTTTCAACGTTGTTGGTCAGCCCTTGCGGTTTCCAGAATCTCCAGTGGTCAGTTTCTCAGCTAGAGATCTTATCCGAGGCTTGCTCGTGAAGGAGCCTCAGCATAGACTGGCATACAAAAGAGGAGCCACAGAAATCAAGCAACATCCTTTCTTTGAAGGTGTAAATTGGGCTTTGATACGCTGCGCGAGCCCTCCTGAGATCCCAAGGCCTGTGGAATTCGAGAGAATTTCAGTTCCACCAGCAGCATCAACCAGTGAGAAAGGTGTAGCTGGAACTGTTCCTTACCAGAAGAATTCAGACAACTATCTTGAGTTTGATTTCTTCTAATCTATTTTTTATATATCTTTTTTTCCGTCGAGGCGATATTGGCTGTTCATCTTCACAAATTGAAACATAGGAAGGCTGTACAACATTTGGAAGATGTTATGTGAAGGTTTGATTAGTTTGATGATCATATTATTGTTTTGAGTTGTAATTCAACAGTTGAAAATTTGTTGCATGCCAAAACACTACAAGTTTGATGCTACCAATCGATAATGTGAATTTGTTAGTTTATTTATATCTTTGTTTTTCTTCCTTTTATGGTTCGATAACTCTTTTTGATGTATGAGGTTAGTTGCTTCAATAGTATTTATTCGAAGTTATCAACATGATATCAGTAGACTATAAGCCTTTGATTTGTGGTGTTTGAAGCTCTCGACTTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGAAGCGATTTTGAGAAGCCTTTGATGATTATTAGTCTGGTAGCCTTTGATAGTTAGTGTTTGAAACTCTCGACATGATATCACTAGACTATAAGCCTTTAATTTGTAGTGTTTGAAACACTCCACATGTTTTTAGAAGCCATGATTATTAATATCAGTAGACTATAAGCCTTTGATTTGTGGTGTTTGAAGCTCTGGACTTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGAAACGATTTTGAGAAGCCTTTGATGATTATTGGTCTGGTAGCCTTTGATAGTTAGTGTTTGAAACTCTCGACATGATATCACTAGACTATAAGCCTTTAATTTGTAGTGTTTGAAACACTCCACATGTTTTTAGAAGCCATGATTATTGATATCAGTAGACTATAAGCCTTTGATTTGTGGTGTTTGAAGCTCTCGACTTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGAAGCGATTTTGAGAAGCCTTTGATGATTATTAGTCTGGTAGCCTTTGATAGTTAGTGTTTGAAACTCTCGACATGATATCACTAGACTATAAGCCTTTAATTTGTAGTGTTTGAAACACTCCACATGTTTTTAGAAGCCATGATTATTAATATCAGTAGACTATAAGCCTTTGATTTGTGGTGTTTGAAGCTCTGGACTTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGAAACGATTTTGAGAAGCCTTTGATGATTATTGGTCTGGTAGCCTTTGATAGTTAGTGTTTGAAACTCTCGACATGATATCACTAGACTATAAGCCTTTAATTTGTAGTGTTTGAAACACTCCACATGTTTTTAGAAGCCATGATTATTGATATCAGTAGACTATAAGCCTTTGATTTGTGGTGTTTGAAGCTCTGGACTTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGAAACGATTTTGAGAAGCCTTTGATGATTATTGGTCTGGTAGCTTTGATAGTTAGTGTTTGAAACTCTCGACATGATATCACTAGACTATAAGCCTTTAATTTGTAGTGTTTGAAACACTCCACATGTTTTTAGAAGCCATGATTATTGATATCACTAGACTATAAGCCTTTGATTTGTAGTGAATGATACATTCCACATGTTTTTGAGAAGCCAGACCGATAATCATGATGAACAATATGAAATGTGATATACACAAAACATTTAGTGTTTATGTATTATCGATTTTGAACTATAAATAATAATCTAATACACAAAACATTAAAAAAAA</genome_strand>
        <mrna_strand>GTTCTTATCTTCTTTTATGTGGTGTTTGACTGCTCTTTAATGTCTACATTTTAATGTTTTGCTTTGTTTTAGGTTCCTGTTTCCTGGAGGAAAAAAAGGGATTTGGTTGTTTTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................GAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATGAAATAGGTAACCAAGTTAGCCCATTACCAGAGCTTATTGCTGAGCCTACTGGAGCACGGTCAATGTCATTTGTCGGGACTCACGAGTACTTAGCACCCGAGATAATCAAAGGTGAAGGACACGGCAGTGCAGTAGACTGGTGGACCTTTGGTATCTTTCTATATGAGTTACTGTTTGGCAAAACACCCTTCAAGGGATCAGGAAATCGACAAACTCTTTTCAACGTTGTTGGTCAGCCCTTGCGGTTTCCAGAATCTCCAGTGGTCAGTTTCTCAGCTAGAGATCTTATCCGAGGCTTGCTCGTGAAGGAGCCTCAGCATAGACTGGCATACAAAAGAGGAGCCACAGAAATCAAGCAACATCCTTTCTTTGAAGGTGTAAATTGGGCTTTGATACGCTGCGCGAGCCCTCCTGAGATCCCAAGGCCTGTGGAATTCGAGAGAATTTCAGTTCCACCAGCAGCATCAACCAGTGAGAAAGGTGTAGCTGGAACTGTTCCTTACCAGAAGAATTCAGACAACTATCTTGAGTTTGATTTCTTCTAATCTATTTTTTATATATCTTTTTTTCCGTCGAGGCGATATTGGCTGTTCATCTTCACAAATTGAAACATAGGAAGGCTGTACAACATTTGGAAGATGTTATGTGAAGGTTTGATTAGTTTGATGATCATATTATTGTTTTGAGTTGTAATTCAACAGTTGAAAATTTGTTGCATGCCAAAACACTACAAGTTTGATGCTACCAATCGATAATGTGAATTTGTTAGTTTATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324318" ref_strand="+" ref_description="SGN-U324318        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:21127929-21128574 FORWARD | Aliases: MSG15.4, MSG15_4(evalue: 2e-34, score=142) genbank/nr: At5g51960(evalue: 2e-33, score=145)">
      <seq>ttttgcagaaatgggatcttctgaaggtcgaagagcaactttaatggtgtacagaaatttactgaaagcagtgaaaaaacatatagggaaggaagaacacaaatctcattttactgatttcagcagggaagaattcaagaagaacataaatctggaatactcaaaagactcttcttttattcagcaaagaattaatcttgctcaaaattatacttatcttctcaatagtatccatcatcataaggacttgctattttcttacaacattgcagtggatagatcaaatgagatgacaaaagtgctgggcaaatctgctgcaagtgtgggtctacgccttcctgatgtttatcagcattaaaagttgcatatgcatcaccgagtcatatatacacatttgctcaatgtacgcgttgtttgcattactggtatcatttcgaaggtggttttagatgattcaacaaaactggaagctgatatcacagatatctcctagaccaactttcattcatatctccttaggataacaatttcgcggatctgtcctatgttggacagaatgtttttggttcgatgaacaccaaaccaggaaagtcaatcagaaaaatgaagaattctccgcgtttgtgaagactgcctcagaaattgccaagctagagatagttgtgcctgataagtttcatttcatgtgagaactcattagtccatttgagcctgttgtttctgtttgttactgttgtctcttttttcactattcgttcattctactgacgatctttcataaacaacttctctacctactttatcattcctggacttcccctgaaaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="92134" stop="16812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91834" g_stop="91591" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91590" i_stop="90067" i_length="1524">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90066" g_stop="89947" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="364" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89946" i_stop="89198" i_length="749">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89197" g_stop="88739" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="823" r_length="459" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88738" i_stop="88024" i_length="715">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.879" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88023" g_stop="87996" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="850" r_length="27" r_score="0.607"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-U324318" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91834" e_stop="91591"/>
          <exon e_start="90066" e_stop="89947"/>
          <exon e_start="89197" e_stop="88739"/>
          <exon e_start="88023" e_stop="87996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTTTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAGGTACCTTCATCTCTTTAATTAATTATCCCCGATTTTTGTTAAGTTGTAGCCCCTCTTTTTCTTGTTACCTGTTGTATTGTATTGTTATTTTAAGTACTATGTTTGTTTTGGTTGTTCTGAAAGATTTCATTTTTATGTATAATTACTTATTTGGTGTGGTTTCATCTGGTGGCAGATTTTGGATTTTCACTAATGAGTTCAAGCTATGAAAGCCGAAAGTTGTTTAACATTTGTTGTATATACATGTATAAACAGTGTAATCCTCAGTCTTACCTAGCTCCGCCCCTATATTTGTGTCGTTATATTATTTGGAAGGGAAGCTTTGTGTAACTGGTAAAATTGTTGTCATGTGATTAGGATGTTATAGTTTGAGTGTGGAAACAACCTCTTGCGGAAATGTGGTAAGATTGCATACAATAGTCCTTCCCGGACTCCATTCATAGCGGAACCTTTTGGTTCTTGACTAAAATGAAATGTATATAGTTAGTTATAACTCGTTATTATAGTATTAGTAGTGGGAAAATATTTAACAACATATTCAGTATAGTTTCACAAAGTGGGGAAGTAGTGTTAGTAATGGAAGAATATATGAAAACAATTGTTACAAAGTAATAAAAAGTTAGTTTGAGAGTCATTTTAGAAGTGTTACATAAATTTGGACATGAGAAGTATGCATATGAAATGTCTAGTTTGTTTATAATGTTTGAATTTACTTAGTTAAGGCATGTAGCCTAGTGAATTGTGTGTATCATAGAAGAGAGTGAGGACAACAGTGTTATGTAAATTGAATGTTTCATATCTAGTTGGTTTGTAATGTTTTAATTTACTTGGTTAAGGCGTATAGCCTAGTGAATTTTAAGTATCACAGAAGGTAGTGAGGATAACAATGTTATGTGGATTGAATGTTTAGCCTTTAAGGTCCTATGCACCTACAGTATTAGAGCTCACAAAAATGTCGATGTCAAGATGTATGTGTAATCACACAGTATCAGGTAAGATTATAAGTCATCACATTCAGTAGAGAGTGGAAGTGGCACAGTGTAGAATAAAATAAGAAGTCACTTGAGATAGTGGTGCAATATTATGATAACTGGAGATGCTACAAGGGAATGAGGTAGGCTGAAAATAATATGGAGGAAAATTCTCATTAGACGTACAATTTCTTGGAATCAATGTGGATTTTGTTTAGGATATAAAGGGTTACATAGAGTCTGTACCAATTGATTAGATCAAGGTTTTGTTATTGTGTCATTGTTAACATTTTACATTCGATCATATTACGGAAGATTTTTTTTCTTCTGATAAGCCTAATGTATAGCTGTAACTAGTCGTCTTTTCCTTATTACTTGACCATATGTTGAAACAATTTAAAGGGTGTCATGGGAAGTCTTTCTTTCTCAACTATAACATTTTTTGTGTGGTAAACTCTCTCCGCGATCATGATTCTTTGGCTCTTACGTTCTTGTTATCTTGAATTATGATAATAATTACATCTTACAAATGTGGCTTTCTTTGTTTTTGCAGGACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTGGTAGGTTTTCACTGCTTCCTTTCCATTTGCTTGATTATGTGACTTTGTGGTAAACGATGGATCCATTTAAGTTGTGTTGTTTATGGTCCAAAAATTGCCATGTCATAGCACGTTAAGCTTGGAAAGTCTGTATGTCTAAGAAATGAAAGAACCAATGGAAATGACAGAGCTAACAAGCTTCATGTTAGCATGTTACTCAAATTTATATTTTTTCAACTTCTTAATGGATGTTTCCTTTCTAGCAATTCGGATAGGATTTAAATATACTTTTTTTCTTTGTTGATGAATAGTTTTTCCATGTGGAAAGTAACCTCATTGCTGCAATGGCTAATTGGATTCAGGGCTCAGATCATTAATTGGCTCATCTTGATAGAATTTAAGATTTCGAAAGCTGCATTACTCACTGCCTTTCATCTTTTACTTAAGTGGTTGTATTGGACGTGAAATTGTCTAATCCAGGTCAAACAACTGTAATTGATGGAGTTGTAGCTAGAAATACATCTATGTAGGATTAGGTCCGGGTTGGTGGTGGCTCCTGTGTTGCTATTTTCGGGTTGTTGATGAAGATATGCATCTAAGATGTTACTGGACATTGTAGCGGCTCTGATTTTGTCGAAAACCTGATGTACTTTTATATGAATGAGTCGGATTAATTTTTGTGGAAATATGAATGGTTCCATAAAATTTTTAACATTTACTACTTGTCTGCAAAGTTTTTGATCCATTTCCACATTCTTGCTTGTTTGCAGCATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATCATTCCTGGACTTACACTGAATTTTTTGTCGTTGTTGTTGAATCTTCACTAAAATCTTGCAAGTTATTGTTATTACAGAAACATTTGGTCAATTATTGAAAAAGAACATGATTACTCCTTTGTTGCAAAAAAATATAATAGTTGTGGTCAACAATGTCTAGTTGTTTTGTGATGTTACAATTCCTCCAATAAACTATGCAATTGCTCAAATAAACAATGGCTTTGAAAGTGGCATAGGTCAGACCAATTTGACCAAATCATGTCATGTCATGTCTCTTTGTATATATAGTTGTGGAGTACCTCAAATTCGGGTAATCAACTATAATCTAAATTCTAAAAATAATCAAACTCTTTTTCGATTCGTATTATTTGTCTTTTAAAGCTTTTGCTTAATCATGAGAGTATTCATCTACCTACTAATCAACGATCGGATGGATAATATAAATATGTTTTCGATACATAGTATAAGAATCTTTTGTCTTCTAATTTATATAATGTAAAATCAAAAGTCAAGCAGAGCACTAAGTAAACCTTCTGTACGAAAAATTACTAAACTTTAAATAAAATGATATACTTTGAACTCATAATTTCTTGAAATTTCTAATCATTTAGTTGTAAGAACCTAATATGTTCTATTTTTTTTTTAAATACTAAGCAAATTTTGGTATATCTAATTATTTGGCCAGATTCAATCATTATTATATATAATAACATAATTTGCATTAAAAAATTTAGGAAAAAAAGGAAAAATTTGACATTATTC</genome_strand>
        <mrna_strand>TTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTTTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATCATTCCTGGACTTCCCCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-AAAAAAAAAAAAAAAAAAAAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342237" ref_strand="+" ref_description="SGN-U342237        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G66520.1 | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains INTERPRO:IPR002885 PPR repeats | chr5:26569105-26570967 FORWARD | Aliases: K1F13.18, K1F13_18 (evalue: 6e-70, score=255) genbank/nr: vegetative(evalue: 6e-70, score=256)">
      <seq>ttttttttttgaatcaagaaacaatatanttgtgcaagagatgttaccaatagntctttacaagaacaaaatcncatctttaaaacaatgaaacctattcctatcgcgcacaactantctctctcttgacaatttctgaaattactttgaaagcctcatgacaatcttcacaaacacgaagattcttcattattctgatcgtttctcctggctttatgttcatcaaaccgtaaacaagagccaatttttcactatgtcgatacacatatttttctttctcattttcttctatgtcaagcagaaccactgaagtatttggtacataccctttggacttcatttgttccaacagttcatcccatctcttaaagatctgctcagcctgaggatggttatcatctccagccacaaattcgtgcgttgttcctgctatagtaattgaactccaacctggagttttctttactccgcgatccttcatcaacttcctcaccattgctgcatcttcccaacgcttagcttctgcatagatgttagacatgataatgtagtatccatcgttaagagggtctaggacacctagttgcctgatagcttcctcagccatttttacgtccttttgagttctacatccaccaagaaaagaaccccatacaacagcatttggttttataggcatgcttgtgatgagctcatacgcgtcttcaagaagtcctgctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="+" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="92173" stop="93487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92470" g_stop="93187" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="+" ref_id="SGN-U342237" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92470" e_stop="93187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCATTTGAATCAAGAAACAATATA-TTGTGCAAGAGATGTTACCAATAG-TCTTTACAAGAACAAAATC-CATCTTTAAAACAATGAAACCTATTCCTATCGCGCACAACTA-TCTCTCTCTTGACAATTTCTGAAATTACTTTGAAAGCCTCATGACAATCTTCACAAACACGAAGATTCTTCATTATTCTGATCGTTTCTCCTGGCTTTATGTTCATCAAACCGTAAACAAGAGCCAATTTTTCACTATGTCGATACACATATTTTTCTTTCTCATTTTCTTCTATGTCAAGCAGAACCACTGAAGTATTTGGTACATACCCTTTGGACTTCATTTGTTCCAACAGTTCATCCCATCTCTTAAAGATCTGCTCAGCCTGAGGATGGTTATCATCTCCAGCCACAAATTCGTGCGTTGTTCCTGCTATAGTAATTGAACTCCAACCTGGAGTTTTCTTTACTCCGCGATCCTTCATCAACTTCCTCACCATTGCTGCATCTTCCCAACGCTTAGCTTCTGCATAGATGTTAGACATGATAATGTAGTATCCATCGTTAAGAGGGTCTAGGACACCTAGTTGCCTGATAGCTTCCTCAGCCATTTTTACGTCCTTTTGAGTTCTACATCCACCAAGAAAAGAACCCCATACAACAGCATTTGGTTTTATAGGCATGCTTGTGATGAGCTCATACGCGTCTTCAAGAAGTCCTGCTCGA</genome_strand>
        <mrna_strand>TTTTTTTTTTGAATCAAGAAACAATATANTTGTGCAAGAGATGTTACCAATAGNTCTTTACAAGAACAAAATCNCATCTTTAAAACAATGAAACCTATTCCTATCGCGCACAACTANTCTCTCTCTTGACAATTTCTGAAATTACTTTGAAAGCCTCATGACAATCTTCACAAACACGAAGATTCTTCATTATTCTGATCGTTTCTCCTGGCTTTATGTTCATCAAACCGTAAACAAGAGCCAATTTTTCACTATGTCGATACACATATTTTTCTTTCTCATTTTCTTCTATGTCAAGCAGAACCACTGAAGTATTTGGTACATACCCTTTGGACTTCATTTGTTCCAACAGTTCATCCCATCTCTTAAAGATCTGCTCAGCCTGAGGATGGTTATCATCTCCAGCCACAAATTCGTGCGTTGTTCCTGCTATAGTAATTGAACTCCAACCTGGAGTTTTCTTTACTCCGCGATCCTTCATCAACTTCCTCACCATTGCTGCATCTTCCCAACGCTTAGCTTCTGCATAGATGTTAGACATGATAATGTAGTATCCATCGTTAAGAGGGTCTAGGACACCTAGTTGCCTGATAGCTTCCTCAGCCATTTTTACGTCCTTTTGAGTTCTACATCCACCAAGAAAAGAACCCCATACAACAGCATTTGGTTTTATAGGCATGCTTGTGATGAGCTCATACGCGTCTTCAAGAAGTCCTGCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317642" ref_strand="+" ref_description="SGN-U317642        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam PF05915: Eukaryotic protein of unknown function (DUF872) | chr3:11137243-11139086 REVERSE | Aliases: MXE2.17(evalue: 2e-31, score=132) genbank/nr: gi|18406086|ref|NP_566844.1| expressed protein [Arabidopsis thaliana] gi|9294037|dbj|BAB01994.1| emb|CAB43660.1~gene_id:MXE2.17~similar to unknown protein [Arabidopsis thaliana] gi|21537038|gb|AAM61379.1| unknown [Arabidopsis thaliana](evalue: 1e-29, score=132)">
      <seq>gagaaattgcagtatcgggtcaaaattgggcgctatttctcgggtctactgtaatcgtcgccggtcagcttccgtcggtgttccggtcaccttgttaggtgaatttgagctttctttctcatcaagacatctattccaattcaaagactgggaattctagtgtatggcttctaggcggaatattaattacagtcgtctcgctgtggatgatgatgacgactattatggatattctggcaagcgagctgaccctagatttgattattcaccaaaatcgttagatagaatcccctggaagtccattgcccttgctctttttctgctctttctgggatgtttgcttctcttactatcctacttcatcttatctggtcatatggaaggagagagttcccaggcatatggtctccttggactcggaatcctcacttttctccctggtttctatgagacgcgtattgcatattactcttggagaggtgctcaaggttatcgatttactgcaatccctgactattgaggttttcacatttcatgtaaacgctaaatgtagttactagcttctgtaatgagctttatgatagtttttattgtaacacacattgccctatacatttcgaataacatctgaatgtagttactggttttcataatgagttcgagtttgatgagtttgcagaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="97930" stop="16816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97630" g_stop="97505" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97504" i_stop="95926" i_length="1579">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95925" g_stop="95612" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="440" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95611" i_stop="95057" i_length="555">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95056" g_stop="94816" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="681" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94815" i_stop="94466" i_length="350">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94465" g_stop="94448" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="699" r_length="18" r_score="0.667"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94447" i_stop="93092" i_length="1356">
            <donor d_prob="0.884" d_score="0.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93091" g_stop="93083" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="708" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-U317642" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97630" e_stop="97505"/>
          <exon e_start="95925" e_stop="95612"/>
          <exon e_start="95056" e_stop="94816"/>
          <exon e_start="94465" e_stop="94448"/>
          <exon e_start="93091" e_stop="93083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATATTGCAGTATCGGGTCAAAATTGGGCGCTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAGGTTAGTGTGAGGTTTTTCGAATCAGCAGAATGTTTTATTGATTTATATGTTTGTATATGCATCCTGTTTTTGGTAGGTGTAGCCTGTAGGTTTATTGATTGAGTTGGATTCATATGTGATTTGATCTCTGATGAGTATTGATATTGGTTTGGCCAAAAATGGTTCTTTTACTTGATTGAAAGAAATGGCATCTGGAATTTCTGATTGTTTGATTTTGATGTTCCTTAGAAAACACTCAAAAGAATTTGCATGATTTAAAAAGCCACTAAAGAATTATGATAGTCTAAACAACAACGAATACCTGGTGCAATTCCACAAGTAGGATCTGGGGAAGGTAGGATATATGCAGATGTTGCCCCTACCTTTACCTTGATCTATACATTCATGCAACCGAGACTGTGCAAAGGTAGAACAGTTTGATACTTCACTGACTGTTCCGCTTCCAAAGTCAGTCATCTGCAGCTCACACTTGGGCAAAGACGACTCTCCCGTGGTTCTATTCTTTGTTAAGTAGTATCAAGGGGATGTAGATGCTGTTGATTTATTGGAAAAAGTCTTTCAAAACAGAGGTAAAGCGATAGTGTCAATTGAGACAGTCGACTATACATTAGGATATCTGGAGGACATATGATTTCACCACGCTAATTTGGATTGGCATCTTACCAAACAAAAATGTTCTCTTGACCATTGTTTTTCTGATTGACATAGTTTCTCTAAAGAGAAAAAGTGCTCTCTTTACAAGTGTGTCAAAGTTAATAAGAGACAATTCTTCATTGTTAGAAGGCCGTATTTGCCTTTCCAGCCAATTTGCACAAAAAAAGGCAAGGAGATCAGGACAATGCTATTTGAAAAGTTCTCCTTATGATACAATTCATAAATAGGCTGTTTATGATTGAATTGGTGTGATACTGTCTTAATTTAGTGCTTTTGAGTATCAAATTTATAAGAATATGCCACTTGTAGAACTTCACAAAATGGTCAATGAGTTTTATGAATCTCGTATACTTTTCAAATTATAAGCGCTAATGTAGAAGCCATGTAAAGGTCTCACTAAATCCTCAATTGGGTGATTAGAAAATTTGATGATCCTTCAGAAAAAGGATTTGGTGACGATAACATTTAATGTTTTGGTTTATTTTTTGAGCTTTGGGATACGCTGATCGCCAAAACCACCAAATTTCTGACTCAAGAATATCTTTCCAAGACACTTTTGTAAACCTTATAAACAAAAAAGGTTCCAGAAGCGATTTTTCTTTTGTATTTCTCTAATAAATAGAGCAGACATGTCATGAGTGTGTTAGTGACAGATTAAAGGTTATCAACTCTCGCGTGTGTCGTAATACATGAAAAACTGATACATTGTAATATACTTTTGTAACAATGTAGACTGTAGTTATAGTGTTTCACCTATTTGTCATTTGTATTTATCCACCTATTCTTTGTAGTTGTATTAAAATTTTAAACTATACCTTACTTTGCCAACTTATTGTATGTTCTGGTAGTCAGATCATTGTGTTCATAATTGATTGGTGTTCTTCTGAGCTGCCTTATTCAGAGTGATCATCTGACAAATTTGCAGACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTGGTAAGTCAAAAACATACATCAATTTATACTGCTTTGGATGCTTAAGCTGCAAAACTTTTGTCCATTATTGTTCAAGATATCCTCGAGGAGAGTGTAGTAATTCATTAAGTCCAGAATCAATTTGCGGCTATGCCATTTATTTGACTGCGTGATTATCAGTTTGTGTTAACAAGGTAACTTTACATTGAATTTGCAGCACAATAAATAGGTGAGATAGCAAATGGCTGAGCTACTTGTTACCGTATCTGTCCTCTTTGTAGTTGCTATAAGCACCATATCTAGGTGATTGTAGATCTGCACTTGAAAATGGTCTTCTTTAATCGATCTCTTGGGACTTGCATTACATGTTGTAAACTTCTGGAATAGGCAATAGGCAATAGATTCTACTTCAAGTCATATTTTCTCTGTTTTGTTTAGACATTCTTGAGTCTAATACTGCCTATGCCGCTGGTTTCATATTGAGTTCTTCATTCAAGTTTCATATTCATTTTTACATTAGTAAGTTAATTAGGCAACTTCCAATTATCAACGTTAACTTTGGTAATTACTCAACAGGTTTCTATGAGACGCGTATTGCATATTACTCTTGGAGAGGTGCTCAAGGTTATCGATTTACTGCAATCCCTGACTATTGAGGTTTTCACATTTCATGTAAACGCTAAATGTAGTTACTAGCTTCTGTAATGAGCTTTATGATAGTTTTTATTGTAACACACATTGCCCTATACATTTCGAATAACATCTGAATGTAGTTACTGGTTTTCATAATGAGTTCGAGTTTGATGAGTTTGCAGCATTCATTTTGTCCCAGCGTGTCAATTCATTTTTTTTCTTTACATAATCTTTGTATCGTCGACGCCTCTATGTGTTGTATTCGATACATCAGATTCCACAGTATGAAGGACTAACTTCAGGAAGCATGAAGCAGTTTACGCCCTGTGGTTATTGATTTTTCGATAAGCATACTATATGGTTTGATTCTTTTAGAACTTCCAATTGGAGAGAGGATGTTTCAAACTTGATTTATATATAAAGTAAAAATCATTGGATAAGCTGTGGTGAATGGTGATGAGGAATTGCCTCGGGGATTCTTGTGCCTATTCTTCACGAAGTTTCATTTAGACACTTCAAAAATAATGCAAGTAGCCAAACAACAACAAAAAGGTACTACTATATAGGCTTTTATGCTTCATTAGCAGCTAACATTGAAGCTAAGGCAATGCTGCATTCTGTTTGCTTAGCATCTCCACTTCACTCCCCAAAACTTAAAGACTCCATTAATGGCACTTCAGAAATCCCCACTACTACCCTTCACCATTTCACTTCTCCATTCGAGCTCAAACAAGCTGTTGCCTTTCTCATCAAAACCAATAAACCTCTTTCACTACTCCCACTTTCTCGGGTAGCTTCCATTTGCGCACTTACTCCCGATTTCCCCTTTGCTCAACAGATTTTCAGCTCTGTTGATCAGCAAGAAGTTGCTATATGGAATAGCTGTTTGAGAAATCTTGCTGAAGGTAGTTCCTTAATTGATGCAATTTTCTTGTTTCAGCAAATGCGTAGTTACAATGTGAGTCTTGACTGTTTCACTTGCTCGTTTGTTCTTAAGGCTTGTGTGGGGTTACGGGATCTTTTACGTGGGAGAATTGTTCATGGGTATATAGAGAAACTTGGGTTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCGTTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTAGAAATGGAAGAAACGGGGTTGAGGGCGAATGAGGTAACTGTAGTGGCTGTTCTTGCAGCTTGTGCTGATTTGGGTGCACTTGACTTGGGTAGGAGGATTCATGAGTATTCAAATAAGAGCGGGTTCAGGAGAAACGTTCACATTTGTAACACTCTGATTGACATGTACATTAAGTGTGGCTGCTTAGAGGCTGCAAAAGCTGTTTTCGATGAAATGAAGGAACCAACAATTGTATCATGGTCAGCCATGATCCAGGGTTTAGCTATCCATGGACACGGGGATGAAGCCTTAGAACTCTTTAACGAGATGATCAAAATGGGAATGAAGCCTAACGAGGTCACGTTTCTTGGAATCTTGCATGCTTGTAGCCATATGGGGTTGATCAATAAGGGGCGAGAATTCTTTACTAGCATGAGTAGAGACTACAACATTTCTCCTCAAATCGAGCATTATGGTTGTATGGTTGATCTCTTGAGTCGAGCAGGACTTCTTGAAGACGCGTATGAGCTCATCACAAGCATGCCTATAAAACCAAATGCTGTTGTATGGGGTTCTTTTCTTGGTGGATGTAGAACTCAAAA</genome_strand>
        <mrna_strand>GAGAAATTGCAGTATCGGGTCAAAATTGGGCGCTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTATGAGACGCGTATTGCATATTACTCTTGGAGAGGTGCTCAAGGTTATCGATTTACTGCAATCCCTGACTATTGAGGTTTTCACATTTCATGTAAACGCTAAATGTAGTTACTAGCTTCTGTAATGAGCTTTATGATAGTTTTTATTGTAACACACATTGCCCTATACATTTCGAATAACATCTGAATGTAGTTACTGGTTTTCATAATGAGTTCGAGTTTGATGAGTTTGCAGAA..............................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327305" ref_strand="+" ref_description="SGN-U327305        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT5G66520.1 | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains INTERPRO:IPR002885 PPR repeats | chr5:26569105-26570967 FORWARD | Aliases: K1F13.18, K1F13_18 (evalue: 9e-73, score=270) genbank/nr: gi|15239979|ref|NP_201453.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana](evalue: 7e-71, score=270)">
      <seq>ctacccttcaccatttcacttctccattcgagctcaaacaagctgttgcctttctcatcaaaaccaataaacctctttcactactcccactttctcgggtagcttccatttgcgcacttactcccgatttcccctttgctcaacagattttcagctctgttgatcagcaagaagttgctatatggaatagctgtttgagaaatcttgctgaaggtagttccttaattgatgcaattttcttgtttcagcaaatgcgtagttacaatgtgagtcttgactgtttcacttgctcgtttgttcttaaggcttgtgtggggttacgggatcttttacgtgggagaattgttcatgggtatatagagaaacttgggtttcaatcgaatttagttttgctaaatgcacttcttcatttatatgctacttgtggagcaacggatgatgccatccttctgttcgataaaatgcctcaacgagatgttgtgtcttggaatataatgattacccaattatcaaagaagggtgatgttgatggggcgtttgacttgtttgggaaaatgcctgagagaaatttaaggtcttggacagccatgattactggttttgttcattgcgtgaaggctaaagaggctattagacttttcgtagaaatggaagaaacggggttgagggcgaatgaggtaactgtagtggctgttcttgcagcttgtgctgatttgggtgcacttgacttgggtaggaggattcatgagtattcaaataagagcgggttcaggagaaacgttcacatttgtaacactctgattgacatgtacattaagtgtggctgcttagaggctgcaaaagctgttttcgatgaaatgaaggaaccaacaattgtatcatggtcagccatgatccagggtttagctatccatggacacggggatgaagccttagaactctttaacgagatgatcaaaatgggaatgaagcctaacgaggtcacgtttcttggaatcttgcatgcttgtagccatatggggttgatcaataaggggcgagaattctttactagcatgagtagagactacaacatttctccctcaatcgagcattatggttgtatggttgatctcttgagtcgagcaggacttcttgaagacgcgtatgagctcatcacaagcatgcctataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="94607" stop="92835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94307" g_stop="93135" g_length="1173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1173" r_length="1173" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-U327305" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94307" e_stop="93135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCCTTCACCATTTCACTTCTCCATTCGAGCTCAAACAAGCTGTTGCCTTTCTCATCAAAACCAATAAACCTCTTTCACTACTCCCACTTTCTCGGGTAGCTTCCATTTGCGCACTTACTCCCGATTTCCCCTTTGCTCAACAGATTTTCAGCTCTGTTGATCAGCAAGAAGTTGCTATATGGAATAGCTGTTTGAGAAATCTTGCTGAAGGTAGTTCCTTAATTGATGCAATTTTCTTGTTTCAGCAAATGCGTAGTTACAATGTGAGTCTTGACTGTTTCACTTGCTCGTTTGTTCTTAAGGCTTGTGTGGGGTTACGGGATCTTTTACGTGGGAGAATTGTTCATGGGTATATAGAGAAACTTGGGTTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCGTTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTAGAAATGGAAGAAACGGGGTTGAGGGCGAATGAGGTAACTGTAGTGGCTGTTCTTGCAGCTTGTGCTGATTTGGGTGCACTTGACTTGGGTAGGAGGATTCATGAGTATTCAAATAAGAGCGGGTTCAGGAGAAACGTTCACATTTGTAACACTCTGATTGACATGTACATTAAGTGTGGCTGCTTAGAGGCTGCAAAAGCTGTTTTCGATGAAATGAAGGAACCAACAATTGTATCATGGTCAGCCATGATCCAGGGTTTAGCTATCCATGGACACGGGGATGAAGCCTTAGAACTCTTTAACGAGATGATCAAAATGGGAATGAAGCCTAACGAGGTCACGTTTCTTGGAATCTTGCATGCTTGTAGCCATATGGGGTTGATCAATAAGGGGCGAGAATTCTTTACTAGCATGAGTAGAGACTACAACATTTCTCCTCAAATCGAGCATTATGGTTGTATGGTTGATCTCTTGAGTCGAGCAGGACTTCTTGAAGACGCGTATGAGCTCATCACAAGCATGCCTATAA</genome_strand>
        <mrna_strand>CTACCCTTCACCATTTCACTTCTCCATTCGAGCTCAAACAAGCTGTTGCCTTTCTCATCAAAACCAATAAACCTCTTTCACTACTCCCACTTTCTCGGGTAGCTTCCATTTGCGCACTTACTCCCGATTTCCCCTTTGCTCAACAGATTTTCAGCTCTGTTGATCAGCAAGAAGTTGCTATATGGAATAGCTGTTTGAGAAATCTTGCTGAAGGTAGTTCCTTAATTGATGCAATTTTCTTGTTTCAGCAAATGCGTAGTTACAATGTGAGTCTTGACTGTTTCACTTGCTCGTTTGTTCTTAAGGCTTGTGTGGGGTTACGGGATCTTTTACGTGGGAGAATTGTTCATGGGTATATAGAGAAACTTGGGTTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCGTTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTAGAAATGGAAGAAACGGGGTTGAGGGCGAATGAGGTAACTGTAGTGGCTGTTCTTGCAGCTTGTGCTGATTTGGGTGCACTTGACTTGGGTAGGAGGATTCATGAGTATTCAAATAAGAGCGGGTTCAGGAGAAACGTTCACATTTGTAACACTCTGATTGACATGTACATTAAGTGTGGCTGCTTAGAGGCTGCAAAAGCTGTTTTCGATGAAATGAAGGAACCAACAATTGTATCATGGTCAGCCATGATCCAGGGTTTAGCTATCCATGGACACGGGGATGAAGCCTTAGAACTCTTTAACGAGATGATCAAAATGGGAATGAAGCCTAACGAGGTCACGTTTCTTGGAATCTTGCATGCTTGTAGCCATATGGGGTTGATCAATAAGGGGCGAGAATTCTTTACTAGCATGAGTAGAGACTACAACATTTCTCCCTCAATCGAGCATTATGGTTGTATGGTTGATCTCTTGAGTCGAGCAGGACTTCTTGAAGACGCGTATGAGCTCATCACAAGCATGCCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344278" ref_strand="+" ref_description="SGN-U344278        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to M-type 9 protein (GI:507127) (Streptococcus pyogenes) | chr1:20871584-20873871 REVERSE | Aliases: F20N2.20(evalue: 4e-44, score=175) genbank/nr: HPr(evalue: 1e-43, score=179)">
      <seq>ttttgagtatggacaaggacaacaatcaacttcaccatgtgagcatttgcctcagacgaactgcaagacggaaactttacgagatcaaaaggaaatgcttgtggagaattcagtctcaagctctgttcaattacaagaactgcaagaaaaacttgatttattgaaagcagcagttgaaatggcttctgatcacaaacatcccagtgacttttatgtgaatcagctaaacgatcaggtggaagtgaaaaggggcaaaattgttgaaatggaaagtcactgcattgatagaagcaaggcccttgagcaaaagaaggtttctcttgaggaaaagttaagagcaacaaatccagagacctatgaaaaatataaaaaggtggaagagattgagttgaagttggagaatatattagccgaaaacaaaagaagagaggaagaactcattgtactctcagccaaggctgagaagcagcccaaattacaacctagaagaacctacattcagcgtgttgaagagatcaccaaaaacagccggaagcaggatgtggacatagaaagaatattaaaagaaacaagggagcttcagttagagagcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309B15-bN4Jp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309B15.1" temp_strand="-" temp_description="C07HBa0309B15.1  AC210365.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0309B15 upload_account_name:france">
        <position start="108565" stop="106801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108265" g_stop="108211" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108210" i_stop="107984" i_length="227">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107983" g_stop="107760" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="279" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107759" i_stop="107658" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107657" g_stop="107511" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="426" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107510" i_stop="107273" i_length="238">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107272" g_stop="107101" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="598" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309B15.1" gen_strand="-" ref_id="SGN-U344278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309B15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108265" e_stop="108211"/>
          <exon e_start="107983" e_stop="107760"/>
          <exon e_start="107657" e_stop="107511"/>
          <exon e_start="107272" e_stop="107101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGTATGGACAAGGACAACAATCAACTTCACCATGTGAGCATTTGCCTCAGGTACTTAATTATGAATGGATTGCATTGCTCTTTAGTATATTGTGGTAGACCTTTTACGCTTTGAGCTAGTTGTCCAATAGAGCAGAACAAGCCAATAATTTTTTAATTGGAGCATATAAAGATAACAGAAATAGGGAACAAACAATGATACTATTTGATTTCGTGGTTAGGCATTGGGAAAGCCTCCAACTTGTCGTCTTATCTTCTAAATTCATGCCATATTGCAGACGAACTGCAAGACGGAAACTTTACGAGATCAAAAGGAAATGCTTGTGGAGAATTCAGTCTCAAGCTCTGTTCAATTACAAGAACTGCAAGAAAAACTTGATTTATTGAAAGCAGCAGTTGAAATGGCTTCTGATCACAAACATCCCAGTGACTTTTATGTGAATCAGCTAAACGATCAGGTGGAAGTGAAAAGGGGCAAAATTGTTGAAATGGAAAGTCACTGGTAGGATACTGACGTTTCTATATTTTAAACATTTTTACTTATATTTCCCCTATTGAAACTTGGATGATATCAATTGTTAAGCCTTTTTAAAATATTGTACAGCATTGATAGAAGCAAGGCCCTTGAGCAAAAGAAGGTTTCTCTTGAGGAAAAGTTAAGAGCAACAAATCCAGAGACCTATGAAAAATATAAAAAGGTGGAAGAGATTGAGTTGAAGTTGGAGAATATATTAGCCGAAAACAAAAGAAGGTACGATCTTCTATTAGGTCATGCAAAATATCCGTCGTTTGTTAGATTACATAGTTGAACCAAAAGAGAAATTGAGAGAAGAAACTGTACCATTTTTGGTTTTTTATCGTTTGGATTCTTTGACATTTAAGAATTTTCATTACTCATTATGGAAAGGGGTCAAGTTGTGTGGATCTATTTGTATATCCGAGCTTTTAATGCTGCTTTGTTTGAAAGTTTGGTATGCGTAACTCTGCAGAGAGGAAGAACTCATTGTACTCTCAGCCAAGGCTGAGAAGCAGCCCAAATTACAACCTAGAAGAACCTACATTCAGCGTGTTGAAGAGATCACCAAAAACAGCCGGAAGCAGGATGTGGACATAGAAAGAATATTAAAAGAAACAAGGGAGCTTCAGTTAGAGAGCAACTTT</genome_strand>
        <mrna_strand>TTTTGAGTATGGACAAGGACAACAATCAACTTCACCATGTGAGCATTTGCCTCAG...................................................................................................................................................................................................................................ACGAACTGCAAGACGGAAACTTTACGAGATCAAAAGGAAATGCTTGTGGAGAATTCAGTCTCAAGCTCTGTTCAATTACAAGAACTGCAAGAAAAACTTGATTTATTGAAAGCAGCAGTTGAAATGGCTTCTGATCACAAACATCCCAGTGACTTTTATGTGAATCAGCTAAACGATCAGGTGGAAGTGAAAAGGGGCAAAATTGTTGAAATGGAAAGTCACTG......................................................................................................CATTGATAGAAGCAAGGCCCTTGAGCAAAAGAAGGTTTCTCTTGAGGAAAAGTTAAGAGCAACAAATCCAGAGACCTATGAAAAATATAAAAAGGTGGAAGAGATTGAGTTGAAGTTGGAGAATATATTAGCCGAAAACAAAAGAAG..............................................................................................................................................................................................................................................AGAGGAAGAACTCATTGTACTCTCAGCCAAGGCTGAGAAGCAGCCCAAATTACAACCTAGAAGAACCTACATTCAGCGTGTTGAAGAGATCACCAAAAACAGCCGGAAGCAGGATGTGGACATAGAAAGAATATTAAAAGAAACAAGGGAGCTTCAGTTAGAGAGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="12184" PGL_stop="10523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12184" e_stop="12181"/>
            <exon e_start="12099" e_stop="11829"/>
            <exon e_start="11461" e_stop="10523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.844" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12184" e_stop="12181" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.844" acc_prob="0.970">
            <gDNA_intron_boundary i_start="12180" i_stop="12100" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12099" e_stop="11829" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.882" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11828" i_stop="11462" i_length="367"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="11461" e_stop="10523" e_length="939"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12184" stop="12181"/>
              <exon start="12099" stop="11829"/>
              <exon start="11461" stop="10523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTG : ATGTGGCACATATGTACAGTAAATTCATTGGTCCACTACCTTCAACCGCTGAGGATTATGTATCTTCCCTTCAGAAGCTCTTTCCTACCATAGTGGACACCAAGATACTCTTGAATGCAAACGGTGTTTTTCGACAGACTTTAAATAAAAGCAACACCTCACTATCCAGAGCATTTGTCTCTATCTGTCCTCATATTGCTTTAGGTATCAAAACATCTAGTTTGGCTGATAGACCGTGTGTAGAAGTGGAGGTTCAAGTAGATGAAAAAAG : ATCCTCGAACTGGAACTCAGGAGCCAAGCATGAAGCTGGCTATGATGCATTCATGACTGGATGCATTTTTGCACAGGCGTGCAATCATCTAGGCATTGATTTCACCCTCCATGTGCTTGGTGGAGATTTAGCGAAGGATACAAAGCTTCAGAATTATATCAATCGCCTTTACCTTAGCTGGGTTAGTGGTAACGTCATTGATCTAAGTAGTGGGAAATGTACACCAGACTCCTCAGCTTCTAGCAACCTCAAAAGTCGGTACCAGGATATCTCATTTCCTAGCATCATTCTGTTGTGGGGATTTCCATCTAAACTAAAAGCAAGGGAGATAAAAGCTTGTATAACACAAGCCTTTGGCCCAAATCCTGTTTCTTCTGTCTACCACTTGGATGAAAGTGCTGTGTTTATTCAGTTTAGCAAGCCAGAACTGGTTTCTAAGTTTCTAGAAATGAAGGAAACTCTAAGTAGGAACAGTGATCCAATTTCTGTGTTGCATCCTCTTTCAAACATTCTGAACGGGGAACACACTCATGCAGCTACCTACGATGTGTATAAACAAATTTGCAGTTCATCCATCTCAAAGAAATTATTTGCAGATCAGGCTGAAGCTATTGGTATCAAACACAAAACAGTGTCTTCTAGGGGAGATCGAGGTAAAAAGGGAAACCAAGAAACAGAAGTTAGGATGTTCAATGAGAAAGCAGATGATCTGATAAGTTCACCATATGGCTGCTCTGGAACAGATCGATCAATGGAGTCTTTTTATCTAGATGAAGTTCTGGCAAGCAAATAGGAGTAGTTTATGTATCATGCATGATATGATGTATATGTAGATCATTTTTGGCCATATTTGTTTCTCTGATACCTACAGCAGCATGTATAGTGAGATTGTGTAACACACATTATCAAGGATCATTCTAATGCTTCTTCATGAACAGA</gDNA_template>
            <first_frame> L   : D  V  A  H  M  Y  S  K  F  I  G  P  L  P  S  T  A  E  D  Y  V  S  S  L  Q  K  L  F  P  T  I  V  D  T  K  I  L  L  N  A  N  G  V  F  R  Q  T  L  N  K  S  N  T  S  L  S  R  A  F  V  S  I  C  P  H  I  A  L  G  I  K  T  S  S  L  A  D  R  P  C  V  E  V  E  V  Q  V  D  E  K  R :   S  S  N  W  N  S  G  A  K  H  E  A  G  Y  D  A  F  M  T  G  C  I  F  A  Q  A  C  N  H  L  G  I  D  F  T  L  H  V  L  G  G  D  L  A  K  D  T  K  L  Q  N  Y  I  N  R  L  Y  L  S  W  V  S  G  N  V  I  D  L  S  S  G  K  C  T  P  D  S  S  A  S  S  N  L  K  S  R  Y  Q  D  I  S  F  P  S  I  I  L  L  W  G  F  P  S  K  L  K  A  R  E  I  K  A  C  I  T  Q  A  F  G  P  N  P  V  S  S  V  Y  H  L  D  E  S  A  V  F  I  Q  F  S  K  P  E  L  V  S  K  F  L  E  M  K  E  T  L  S  R  N  S  D  P  I  S  V  L  H  P  L  S  N  I  L  N  G  E  H  T  H  A  A  T  Y  D  V  Y  K  Q  I  C  S  S  S  I  S  K  K  L  F  A  D  Q  A  E  A  I  G  I  K  H  K  T  V  S  S  R  G  D  R  G  K  K  G  N  Q  E  T  E  V  R  M  F  N  E  K  A  D  D  L  I  S  S  P  Y  G  C  S  G  T  D  R  S  M  E  S  F  Y  L  D  E  V  L  A  S  K  *  E  *  F  M  Y  H  A  *  Y  D  V  Y  V  D  H  F  W  P  Y  L  F  L  *  Y  L  Q  Q  H  V  *  *  D  C  V  T  H  I  I  K  D  H  S  N  A  S  S  *  T   </first_frame>
            <second_frame>  L  :  M  W  H  I  C  T  V  N  S  L  V  H  Y  L  Q  P  L  R  I  M  Y  L  P  F  R  S  S  F  L  P  *  W  T  P  R  Y  S  *  M  Q  T  V  F  F  D  R  L  *  I  K  A  T  P  H  Y  P  E  H  L  S  L  S  V  L  I  L  L  *  V  S  K  H  L  V  W  L  I  D  R  V  *  K  W  R  F  K  *  M  K  K   : D  P  R  T  G  T  Q  E  P  S  M  K  L  A  M  M  H  S  *  L  D  A  F  L  H  R  R  A  I  I  *  A  L  I  S  P  S  M  C  L  V  E  I  *  R  R  I  Q  S  F  R  I  I  S  I  A  F  T  L  A  G  L  V  V  T  S  L  I  *  V  V  G  N  V  H  Q  T  P  Q  L  L  A  T  S  K  V  G  T  R  I  S  H  F  L  A  S  F  C  C  G  D  F  H  L  N  *  K  Q  G  R  *  K  L  V  *  H  K  P  L  A  Q  I  L  F  L  L  S  T  T  W  M  K  V  L  C  L  F  S  L  A  S  Q  N  W  F  L  S  F  *  K  *  R  K  L  *  V  G  T  V  I  Q  F  L  C  C  I  L  F  Q  T  F  *  T  G  N  T  L  M  Q  L  P  T  M  C  I  N  K  F  A  V  H  P  S  Q  R  N  Y  L  Q  I  R  L  K  L  L  V  S  N  T  K  Q  C  L  L  G  E  I  E  V  K  R  E  T  K  K  Q  K  L  G  C  S  M  R  K  Q  M  I  *  *  V  H  H  M  A  A  L  E  Q  I  D  Q  W  S  L  F  I  *  M  K  F  W  Q  A  N  R  S  S  L  C  I  M  H  D  M  M  Y  M  *  I  I  F  G  H  I  C  F  S  D  T  Y  S  S  M  Y  S  E  I  V  *  H  T  L  S  R  I  I  L  M  L  L  H  E  Q  </second_frame>
            <third_frame>   * :   C  G  T  Y  V  Q  *  I  H  W  S  T  T  F  N  R  *  G  L  C  I  F  P  S  E  A  L  S  Y  H  S  G  H  Q  D  T  L  E  C  K  R  C  F  S  T  D  F  K  *  K  Q  H  L  T  I  Q  S  I  C  L  Y  L  S  S  Y  C  F  R  Y  Q  N  I  *  F  G  *  *  T  V  C  R  S  G  G  S  S  R  *  K  K  :  I  L  E  L  E  L  R  S  Q  A  *  S  W  L  *  C  I  H  D  W  M  H  F  C  T  G  V  Q  S  S  R  H  *  F  H  P  P  C  A  W  W  R  F  S  E  G  Y  K  A  S  E  L  Y  Q  S  P  L  P  *  L  G  *  W  *  R  H  *  S  K  *  W  E  M  Y  T  R  L  L  S  F  *  Q  P  Q  K  S  V  P  G  Y  L  I  S  *  H  H  S  V  V  G  I  S  I  *  T  K  S  K  G  D  K  S  L  Y  N  T  S  L  W  P  K  S  C  F  F  C  L  P  L  G  *  K  C  C  V  Y  S  V  *  Q  A  R  T  G  F  *  V  S  R  N  E  G  N  S  K  *  E  Q  *  S  N  F  C  V  A  S  S  F  K  H  S  E  R  G  T  H  S  C  S  Y  L  R  C  V  *  T  N  L  Q  F  I  H  L  K  E  I  I  C  R  S  G  *  S  Y  W  Y  Q  T  Q  N  S  V  F  *  G  R  S  R  *  K  G  K  P  R  N  R  S  *  D  V  Q  *  E  S  R  *  S  D  K  F  T  I  W  L  L  W  N  R  S  I  N  G  V  F  L  S  R  *  S  S  G  K  Q  I  G  V  V  Y  V  S  C  M  I  *  C  I  C  R  S  F  L  A  I  F  V  S  L  I  P  T  A  A  C  I  V  R  L  C  N  T  H  Y  Q  G  S  F  *  C  F  F  M  N  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12184" stop="12181"/>
                    <exon start="12099" stop="11829"/>
                    <exon start="11461" stop="10669"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDVAHMYSKFIGPLPSTAEDYVSSLQKLFPTIVDTKILLNANGVFRQTLNKSNTSLSRAFVSICPHIALGIKTSSLADRPCVEVEVQVDEKRSSNWNSGAKHEAGYDAFMTGCIFAQACNHLGIDFTLHVLGGDLAKDTKLQNYINRLYLSWVSGNVIDLSSGKCTPDSSASSNLKSRYQDISFPSIILLWGFPSKLKAREIKACITQAFGPNPVSSVYHLDESAVFIQFSKPELVSKFLEMKETLSRNSDPISVLHPLSNILNGEHTHAATYDVYKQICSSSISKKLFADQAEAIGIKHKTVSSRGDRGKKGNQETEVRMFNEKADDLISSPYGCSGTDRSMESFYLDEVLASK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15150" PGL_stop="14001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15150" e_stop="14822"/>
            <exon e_start="14118" e_stop="14001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="15150" e_stop="14822" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14821" i_stop="14119" i_length="703"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14118" e_stop="14001" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15150" stop="14822"/>
              <exon start="14118" stop="14001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTATCCCACGCTCCGACCACCATTTTCACTACGCGCCGCCGCACACTCTCATCATCTTCTTCCTTCGATATTAAGAATGTTACCAAATCAAACTTCGAATCAGCTCTCAAGGACCTTCGAGGTCTTCTACGGGACGCCGATTTCGTAGCTGTAGACTTGGAAATGACCGGAGTCACCAGTGCTCCTTGGAGAGAATCATTCGATTACGACCGGTATGATATTAGCTACCTGAAAGTTAAGGACTCCGCCGAGAAGTTCGCCGTCGTTCAGTTCGGCGTTTGTCCCTTCCGGTGGGATCCTCACAAGCAATCCTTCATCGCTCATCC : ACACAACTTCTACATATTCCCACGGCAAGAAATTCCTGGTAGCAACCAATCCCGTGAGTTCCTTTGCCAGACAACATCACTTGATTTCTTGGCAAAATACCAGTTTGATTTCAATCTG</gDNA_template>
            <first_frame> H  L  S  H  A  P  T  T  I  F  T  T  R  R  R  T  L  S  S  S  S  S  F  D  I  K  N  V  T  K  S  N  F  E  S  A  L  K  D  L  R  G  L  L  R  D  A  D  F  V  A  V  D  L  E  M  T  G  V  T  S  A  P  W  R  E  S  F  D  Y  D  R  Y  D  I  S  Y  L  K  V  K  D  S  A  E  K  F  A  V  V  Q  F  G  V  C  P  F  R  W  D  P  H  K  Q  S  F  I  A  H  P :   H  N  F  Y  I  F  P  R  Q  E  I  P  G  S  N  Q  S  R  E  F  L  C  Q  T  T  S  L  D  F  L  A  K  Y  Q  F  D  F  N  L </first_frame>
            <second_frame>  I  Y  P  T  L  R  P  P  F  S  L  R  A  A  A  H  S  H  H  L  L  P  S  I  L  R  M  L  P  N  Q  T  S  N  Q  L  S  R  T  F  E  V  F  Y  G  T  P  I  S  *  L  *  T  W  K  *  P  E  S  P  V  L  L  G  E  N  H  S  I  T  T  G  M  I  L  A  T  *  K  L  R  T  P  P  R  S  S  P  S  F  S  S  A  F  V  P  S  G  G  I  L  T  S  N  P  S  S  L  I   : H  T  T  S  T  Y  S  H  G  K  K  F  L  V  A  T  N  P  V  S  S  F  A  R  Q  H  H  L  I  S  W  Q  N  T  S  L  I  S  I   </second_frame>
            <third_frame>   F  I  P  R  S  D  H  H  F  H  Y  A  P  P  H  T  L  I  I  F  F  L  R  Y  *  E  C  Y  Q  I  K  L  R  I  S  S  Q  G  P  S  R  S  S  T  G  R  R  F  R  S  C  R  L  G  N  D  R  S  H  Q  C  S  L  E  R  I  I  R  L  R  P  V  *  Y  *  L  P  E  S  *  G  L  R  R  E  V  R  R  R  S  V  R  R  L  S  L  P  V  G  S  S  Q  A  I  L  H  R  S  S  :  T  Q  L  L  H  I  P  T  A  R  N  S  W  *  Q  P  I  P  *  V  P  L  P  D  N  I  T  *  F  L  G  K  I  P  V  *  F  Q  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15150" stop="14822"/>
                    <exon start="14118" stop="14001"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSHAPTTIFTTRRRTLSSSSSFDIKNVTKSNFESALKDLRGLLRDADFVAVDLEMTGVTSAPWRESFDYDRYDISYLKVKDSAEKFAVVQFGVCPFRWDPHKQSFIAHPHNFYIFPRQEIPGSNQSREFLCQTTSLDFLAKYQFDFNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="27305" PGL_stop="32910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27305" e_stop="27592"/>
            <exon e_start="27764" e_stop="27965"/>
            <exon e_start="28045" e_stop="28331"/>
            <exon e_start="28429" e_stop="28742"/>
            <exon e_start="28878" e_stop="30015"/>
            <exon e_start="30110" e_stop="30256"/>
            <exon e_start="30345" e_stop="30425"/>
            <exon e_start="30577" e_stop="30802"/>
            <exon e_start="30886" e_stop="31025"/>
            <exon e_start="31464" e_stop="31570"/>
            <exon e_start="31701" e_stop="31873"/>
            <exon e_start="32521" e_stop="32910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.964" e_score="0.997"/>
          <exon-intron don_prob="0.573" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.271" e_score="1.000"/>
          <exon-intron don_prob="0.561" acc_prob="0.996" e_score="0.998"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.972" e_score="0.988"/>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="0.991"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.850" e_score="0.991"/>
          <exon-intron don_prob="0.959" acc_prob="0.918" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="27305" e_stop="27592" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.964">
            <gDNA_intron_boundary i_start="27593" i_stop="27763" i_length="171"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27764" e_stop="27965" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.573" acc_prob="0.914">
            <gDNA_intron_boundary i_start="27966" i_stop="28044" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28045" e_stop="28331" e_length="287"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28332" i_stop="28428" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28429" e_stop="28742" e_length="314"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.271">
            <gDNA_intron_boundary i_start="28743" i_stop="28877" i_length="135"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="28878" e_stop="30015" e_length="1138"/>
          </exon>
          <intron i_serial="5" don_prob="0.561" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30016" i_stop="30109" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30110" e_stop="30256" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30257" i_stop="30344" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="30345" e_stop="30425" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="30426" i_stop="30576" i_length="151"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="30577" e_stop="30802" e_length="226"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30803" i_stop="30885" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30886" e_stop="31025" e_length="140"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31026" i_stop="31463" i_length="438"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="31464" e_stop="31570" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.850">
            <gDNA_intron_boundary i_start="31571" i_stop="31700" i_length="130"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="31701" e_stop="31873" e_length="173"/>
          </exon>
          <intron i_serial="11" don_prob="0.959" acc_prob="0.918">
            <gDNA_intron_boundary i_start="31874" i_stop="32520" i_length="647"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="32521" e_stop="32910" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27305" stop="27592"/>
              <exon start="27764" stop="27965"/>
              <exon start="28045" stop="28331"/>
              <exon start="28429" stop="28742"/>
              <exon start="28878" stop="30015"/>
              <exon start="30110" stop="30126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30115" stop="30256"/>
              <exon start="30345" stop="30425"/>
              <exon start="30577" stop="30802"/>
              <exon start="30886" stop="30938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="31025"/>
              <exon start="31464" stop="31570"/>
              <exon start="31701" stop="31873"/>
              <exon start="32521" stop="32910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCATTGCCATCTACGTTACTCGCTGAAGCGCAAATGCTTCGGGACAGAGCTATGAGTCATTACCAAGCACGCAGCTTGTTTGGAGGCAGCCACAGGCTTCATGGTCGTAGAAATGGTCTGGGATTTGACAGACAGACAGTTATGGACAGGGGTGTGGGTGTTACAATTGCCCGGAGGGCTTCATCCTCTTTTTCAGAGAGTTTGAAGTTGAAGGAACTTGAAGGCGAGCCACTTTTAGATGCTCATGGCTTGAAAGCATTGATCCGCCTCTTGCGCTTAGCACAG : CCTCTTGGGAAAGGTCTGTTGCAAAGACTCTTGTTGAATTTGTCTGCTCATAGCAGTACAAGAGCAGTTCTAGTCCACCTTCTTCTTGAAGCTATCAAGCCCGAGACTGGAGGGGCTGGTGGTGGTTTAACAACCATTAACTCACAGAGACTTTATGGCTGTCAGTCGAATATTGTTTATGGACGATCACAATTATTTGATG : GTCTTCCTCCACTGGTATTGCGGCGGATTCTGGAGATCTTAACTTACCTTGCTACCAACCACTCTGCAGTTGCCAGTCTTCTTTTCTACTTTGATCTCTCGCTTATTCCAGAGTGGTCAGATGTGAAGTGTTTGGAAAATAAGAGGGACAAAGGCAAGGAGAAAATTGTTGAAGAAGATCCCTCCAATCCTTTTAGAAGCTCTAACAAGAGGGATATTCCATTGGTTTTGTTTCTGAAGCTCTTGAACCAGCCACTTTTTTTGCGCAGCATAGCACATCTTGAACAG : GTCATGGGACTCCTTCAAGTAGTTGTCTATACTGCTGCATCCAAGATGGAGTGTCAGTCTCATTCTGAAGAAACAGTAGACCGTTCTCATAATGAAACAGTAGAGGGTTCTAATAATCCTGATGGCAATGAAACTATGAGTGATATACAGAAAGATCCTGCGTTGCCAGACATAAAGTCCCCTCAAGATGATAGCGGCACTGGTTCTGCCAACCCTGCATCTGATGCCAATGGAAGCACAATCATTCATGACATCTTCTTGCAGCTGCCACATTCTGATTTGCACAATCTTTGCTGTCTTCTTGGTCATGAAGG : ACTCTCAGATAAAGTTTACATGCTTGCGGGTGAGGTGTTGAAGAAGCTAGCCTCAGTTGCTGCTCCCCATCGGAAGTTCTTCATTTCTGAACTTTCAGAGTTGACTCAAAGGCTGAGCAAGTCAGCTGTGGAAGAGCTTATCACACTTAAGAATACACACATGCTGGGATTGAGCGCTGGATCTATGGCTGGAGCTGCGGTCCTTCGTGTACTACAGACTCTTAGTTCACTAAGTACAGCTTCTGCTGATGGCAATACAGACACATCTATGGAGGAAGAACATGATGAGCATAACATCATGTGGAAGTTAAATGTTGCACTAGAACCTTTGTGGGAAGGCCTGAGTGAATGCATAGGCACCATGGAGTTAGAGCTCACCCAGAGCACTTCTTCTTCAGTTATGTCAAGTACCAACACTGGGGAGCATATAAATGAAGCCGGTGCTTCATCTGTATCTTCTCCATTGCCCCCTGGAACTCAGCGTCTGTTACCTTTTATTGAGGCTTTCTTTGTTCTGTGTGAGAAGCTTCAGGCAAACATCTCTATTATGCAGCAAGATCATATGAATGCAACTGCAAGAGAAGTGAAAGAGTTAGCCGGTACTTCAGTCAAGTTGTCCTCCAAGTCTGTTGGTGATTCACATAAAAGAGTAGATGGTGCTGTAACATTTGTAAGATTTGCGGAAAAGCATAGGCGCTTGCTTAACGCTTTTGTCAGGCAGAACCCCGGCTTACTGGAGAAATCACTTTGTGTGATGCTGAAAGCCCCACGGCTCATTGATTTTGACAATAAAAGAGCTTATTTTCGCTCGAGAATAAGGCAGCAGCATGAACAGCACCTCTCAGGTCCTCTGCGAATTAGCGTTCGGCGGGCTTATGTGTTGGAGGATTCTTATAATCAGTTGCGTATGCGACCCAATCAAGACCTGAAAGGACGGTTAAATGTGCATTTTCAAGGTGAAGAGGGTATTGATGCTGGTGGTTTGACGAGAGAGTGGTATCAATTGCTATCAAGGGTCATATTTGACAAAGGAGCTTTGCTGTTTACGACTGTTGGGAATAATGCAACTTTCCAACCTAACCCAAACTCTGTTTATCAAACTGAACATCTCTCATACTTCAAATTTGTAGGCCGTGTG : GTTGCTAAAGCACTATTTGACGGGCAGTTGCTGGATGTTCATTTTACCCGGTCATTCTACAAACATATCCTTGGTGTGAAGGTCACATATCATGATATAGAGGCTGTCGATCCTGATTACTATAAGAACTTGAAGTGGATGCTGGAG : AATGATGTGAGTGATATACCAGATTTGACTTTTAGCATGGATGCAGATGAGGAAAAACTCATTCTTTATGAGAAAACAGAG : GTTACTGATTATGAGCTTAAACCTGGAGGAAGAAATATAAGGGTCACAGAAGAGACAAAGCACGAATATGTTGATCTCGTTGCTGACCATATTCTGACAAATGCTATTCGCCCTCAAATAAATGCATTCCTTGAAGGTTTCAGTGAATTGGTACCACGTGAACTTATCTCCATTTTCAATGATAAGGAGCTTGAACTTTTGATAAGTGGTCTACCAGAAATTGACA : TGGAAGATCTGAAGGCCAACACTGAATATACTGGATATACCACGGCATCTACTGCTATTCAGTGGTTTTGGGAGGTCGTTAAAGGTTTTAGCAAGGAAGACATGGCAAGATTTCTTCAATTTGTGACCGGCACATCCAAG : GTTCCTTTGGAGGGTTTCAAAGCATTGCAAGGGATCTCTGGCCCTCAGAGATTTCAGATTCACAAAGCTTATGGAGCTCCTGAGAGGCTCCCATCTGCACATACCTG : CTTCAACCAACTTGACCTTCCGGAGTATACTTCCAAAGAACAACTTCAAGAACGTTTGCTTTTGGCTATCCATGAGGCTAGTGAAGGATTTGGTTTTGGTTGAGACAAGCTTACCTTGTGCAGATTTCCTGAAAATTGCATATATTTGATCACCCTGTGATTGCCATGTAAAT : ACTGGCTGATCGATATCAACTGCACAAGATAGATTTGGAGTGGTATTTCTTAGAAATTTGAGTCCATGCAGAGCCTGCCTCAAGGATGTGTAGGTAGTTGGCCACACCACTCTGGTCAGTTTAGTATCTTGAGGGTAGTGAGTTATGCATTACAAGTGGTGAGGAGCTCTGTTATTTTGTTGTTCCTTCCATTGCGATAGGACACTCCTACAGCCATCCCCGTGTAGATAAGTCGGTTCTCTTTTTGTCAGGGGGTTTAGTGTAGGAGGTCTACATTTATTTTGGGAAATGGGTAGGTTGCTAATTCTTTCATGCTTTACAACCTCATTAGTTACCTATGGTCACCGATAACTCTTACATCACCTTATAATGCTATACTTCACATCTGGT</gDNA_template>
            <first_frame> S  A  L  P  S  T  L  L  A  E  A  Q  M  L  R  D  R  A  M  S  H  Y  Q  A  R  S  L  F  G  G  S  H  R  L  H  G  R  R  N  G  L  G  F  D  R  Q  T  V  M  D  R  G  V  G  V  T  I  A  R  R  A  S  S  S  F  S  E  S  L  K  L  K  E  L  E  G  E  P  L  L  D  A  H  G  L  K  A  L  I  R  L  L  R  L  A  Q  :  P  L  G  K  G  L  L  Q  R  L  L  L  N  L  S  A  H  S  S  T  R  A  V  L  V  H  L  L  L  E  A  I  K  P  E  T  G  G  A  G  G  G  L  T  T  I  N  S  Q  R  L  Y  G  C  Q  S  N  I  V  Y  G  R  S  Q  L  F  D   : G  L  P  P  L  V  L  R  R  I  L  E  I  L  T  Y  L  A  T  N  H  S  A  V  A  S  L  L  F  Y  F  D  L  S  L  I  P  E  W  S  D  V  K  C  L  E  N  K  R  D  K  G  K  E  K  I  V  E  E  D  P  S  N  P  F  R  S  S  N  K  R  D  I  P  L  V  L  F  L  K  L  L  N  Q  P  L  F  L  R  S  I  A  H  L  E  Q  :  V  M  G  L  L  Q  V  V  V  Y  T  A  A  S  K  M  E  C  Q  S  H  S  E  E  T  V  D  R  S  H  N  E  T  V  E  G  S  N  N  P  D  G  N  E  T  M  S  D  I  Q  K  D  P  A  L  P  D  I  K  S  P  Q  D  D  S  G  T  G  S  A  N  P  A  S  D  A  N  G  S  T  I  I  H  D  I  F  L  Q  L  P  H  S  D  L  H  N  L  C  C  L  L  G  H  E  G :   L  S  D  K  V  Y  M  L  A  G  E  V  L  K  K  L  A  S  V  A  A  P  H  R  K  F  F  I  S  E  L  S  E  L  T  Q  R  L  S  K  S  A  V  E  E  L  I  T  L  K  N  T  H  M  L  G  L  S  A  G  S  M  A  G  A  A  V  L  R  V  L  Q  T  L  S  S  L  S  T  A  S  A  D  G  N  T  D  T  S  M  E  E  E  H  D  E  H  N  I  M  W  K  L  N  V  A  L  E  P  L  W  E  G  L  S  E  C  I  G  T  M  E  L  E  L  T  Q  S  T  S  S  S  V  M  S  S  T  N  T  G  E  H  I  N  E  A  G  A  S  S  V  S  S  P  L  P  P  G  T  Q  R  L  L  P  F  I  E  A  F  F  V  L  C  E  K  L  Q  A  N  I  S  I  M  Q  Q  D  H  M  N  A  T  A  R  E  V  K  E  L  A  G  T  S  V  K  L  S  S  K  S  V  G  D  S  H  K  R  V  D  G  A  V  T  F  V  R  F  A  E  K  H  R  R  L  L  N  A  F  V  R  Q  N  P  G  L  L  E  K  S  L  C  V  M  L  K  A  P  R  L  I  D  F  D  N  K  R  A  Y  F  R  S  R  I  R  Q  Q  H  E  Q  H  L  S  G  P  L  R  I  S  V  R  R  A  Y  V  L  E  D  S  Y  N  Q  L  R  M  R  P  N  Q  D  L  K  G  R  L  N  V  H  F  Q  G  E  E  G  I  D  A  G  G  L  T  R  E  W  Y  Q  L  L  S  R  V  I  F  D  K  G  A  L  L  F  T  T  V  G  N  N  A  T  F  Q  P  N  P  N  S  V  Y  Q  T  E  H  L  S  Y  F  K  F  V  G  R  V  :  V  A  K  A  L  F  D  G  Q  L  L  D  V  H  F  T  R  S  F  Y  K  H  I  L  G  V  K  V  T  Y  H  D  I  E  A  V  D  P  D  Y  Y  K  N  L  K  W  M  L  E  :  N  D  V  S  D  I  P  D  L  T  F  S  M  D  A  D  E  E  K  L  I  L  Y  E  K  T  E  :  V  T  D  Y  E  L  K  P  G  G  R  N  I  R  V  T  E  E  T  K  H  E  Y  V  D  L  V  A  D  H  I  L  T  N  A  I  R  P  Q  I  N  A  F  L  E  G  F  S  E  L  V  P  R  E  L  I  S  I  F  N  D  K  E  L  E  L  L  I  S  G  L  P  E  I  D   : M  E  D  L  K  A  N  T  E  Y  T  G  Y  T  T  A  S  T  A  I  Q  W  F  W  E  V  V  K  G  F  S  K  E  D  M  A  R  F  L  Q  F  V  T  G  T  S  K  :  V  P  L  E  G  F  K  A  L  Q  G  I  S  G  P  Q  R  F  Q  I  H  K  A  Y  G  A  P  E  R  L  P  S  A  H  T  C :   F  N  Q  L  D  L  P  E  Y  T  S  K  E  Q  L  Q  E  R  L  L  L  A  I  H  E  A  S  E  G  F  G  F  G  *  D  K  L  T  L  C  R  F  P  E  N  C  I  Y  L  I  T  L  *  L  P  C  K   : Y  W  L  I  D  I  N  C  T  R  *  I  W  S  G  I  S  *  K  F  E  S  M  Q  S  L  P  Q  G  C  V  G  S  W  P  H  H  S  G  Q  F  S  I  L  R  V  V  S  Y  A  L  Q  V  V  R  S  S  V  I  L  L  F  L  P  L  R  *  D  T  P  T  A  I  P  V  *  I  S  R  F  S  F  C  Q  G  V  *  C  R  R  S  T  F  I  L  G  N  G  *  V  A  N  S  F  M  L  Y  N  L  I  S  Y  L  W  S  P  I  T  L  T  S  P  Y  N  A  I  L  H  I  W  </first_frame>
            <second_frame>  Q  H  C  H  L  R  Y  S  L  K  R  K  C  F  G  T  E  L  *  V  I  T  K  H  A  A  C  L  E  A  A  T  G  F  M  V  V  E  M  V  W  D  L  T  D  R  Q  L  W  T  G  V  W  V  L  Q  L  P  G  G  L  H  P  L  F  Q  R  V  *  S  *  R  N  L  K  A  S  H  F  *  M  L  M  A  *  K  H  *  S  A  S  C  A  *  H  S :   L  L  G  K  V  C  C  K  D  S  C  *  I  C  L  L  I  A  V  Q  E  Q  F  *  S  T  F  F  L  K  L  S  S  P  R  L  E  G  L  V  V  V  *  Q  P  L  T  H  R  D  F  M  A  V  S  R  I  L  F  M  D  D  H  N  Y  L  M  :  V  F  L  H  W  Y  C  G  G  F  W  R  S  *  L  T  L  L  P  T  T  L  Q  L  P  V  F  F  S  T  L  I  S  R  L  F  Q  S  G  Q  M  *  S  V  W  K  I  R  G  T  K  A  R  R  K  L  L  K  K  I  P  P  I  L  L  E  A  L  T  R  G  I  F  H  W  F  C  F  *  S  S  *  T  S  H  F  F  C  A  A  *  H  I  L  N  R :   S  W  D  S  F  K  *  L  S  I  L  L  H  P  R  W  S  V  S  L  I  L  K  K  Q  *  T  V  L  I  M  K  Q  *  R  V  L  I  I  L  M  A  M  K  L  *  V  I  Y  R  K  I  L  R  C  Q  T  *  S  P  L  K  M  I  A  A  L  V  L  P  T  L  H  L  M  P  M  E  A  Q  S  F  M  T  S  S  C  S  C  H  I  L  I  C  T  I  F  A  V  F  L  V  M  K   : D  S  Q  I  K  F  T  C  L  R  V  R  C  *  R  S  *  P  Q  L  L  L  P  I  G  S  S  S  F  L  N  F  Q  S  *  L  K  G  *  A  S  Q  L  W  K  S  L  S  H  L  R  I  H  T  C  W  D  *  A  L  D  L  W  L  E  L  R  S  F  V  Y  Y  R  L  L  V  H  *  V  Q  L  L  L  M  A  I  Q  T  H  L  W  R  K  N  M  M  S  I  T  S  C  G  S  *  M  L  H  *  N  L  C  G  K  A  *  V  N  A  *  A  P  W  S  *  S  S  P  R  A  L  L  L  Q  L  C  Q  V  P  T  L  G  S  I  *  M  K  P  V  L  H  L  Y  L  L  H  C  P  L  E  L  S  V  C  Y  L  L  L  R  L  S  L  F  C  V  R  S  F  R  Q  T  S  L  L  C  S  K  I  I  *  M  Q  L  Q  E  K  *  K  S  *  P  V  L  Q  S  S  C  P  P  S  L  L  V  I  H  I  K  E  *  M  V  L  *  H  L  *  D  L  R  K  S  I  G  A  C  L  T  L  L  S  G  R  T  P  A  Y  W  R  N  H  F  V  *  C  *  K  P  H  G  S  L  I  L  T  I  K  E  L  I  F  A  R  E  *  G  S  S  M  N  S  T  S  Q  V  L  C  E  L  A  F  G  G  L  M  C  W  R  I  L  I  I  S  C  V  C  D  P  I  K  T  *  K  D  G  *  M  C  I  F  K  V  K  R  V  L  M  L  V  V  *  R  E  S  G  I  N  C  Y  Q  G  S  Y  L  T  K  E  L  C  C  L  R  L  L  G  I  M  Q  L  S  N  L  T  Q  T  L  F  I  K  L  N  I  S  H  T  S  N  L  *  A  V  W :   L  L  K  H  Y  L  T  G  S  C  W  M  F  I  L  P  G  H  S  T  N  I  S  L  V  *  R  S  H  I  M  I  *  R  L  S  I  L  I  T  I  R  T  *  S  G  C  W  R :   M  M  *  V  I  Y  Q  I  *  L  L  A  W  M  Q  M  R  K  N  S  F  F  M  R  K  Q  R :   L  L  I  M  S  L  N  L  E  E  E  I  *  G  S  Q  K  R  Q  S  T  N  M  L  I  S  L  L  T  I  F  *  Q  M  L  F  A  L  K  *  M  H  S  L  K  V  S  V  N  W  Y  H  V  N  L  S  P  F  S  M  I  R  S  L  N  F  *  *  V  V  Y  Q  K  L  T  :  W  K  I  *  R  P  T  L  N  I  L  D  I  P  R  H  L  L  L  F  S  G  F  G  R  S  L  K  V  L  A  R  K  T  W  Q  D  F  F  N  L  *  P  A  H  P  R :   F  L  W  R  V  S  K  H  C  K  G  S  L  A  L  R  D  F  R  F  T  K  L  M  E  L  L  R  G  S  H  L  H  I  P   : A  S  T  N  L  T  F  R  S  I  L  P  K  N  N  F  K  N  V  C  F  W  L  S  M  R  L  V  K  D  L  V  L  V  E  T  S  L  P  C  A  D  F  L  K  I  A  Y  I  *  S  P  C  D  C  H  V  N  :  T  G  *  S  I  S  T  A  Q  D  R  F  G  V  V  F  L  R  N  L  S  P  C  R  A  C  L  K  D  V  *  V  V  G  H  T  T  L  V  S  L  V  S  *  G  *  *  V  M  H  Y  K  W  *  G  A  L  L  F  C  C  S  F  H  C  D  R  T  L  L  Q  P  S  P  C  R  *  V  G  S  L  F  V  R  G  F  S  V  G  G  L  H  L  F  W  E  M  G  R  L  L  I  L  S  C  F  T  T  S  L  V  T  Y  G  H  R  *  L  L  H  H  L  I  M  L  Y  F  T  S  G </second_frame>
            <third_frame>   S  I  A  I  Y  V  T  R  *  S  A  N  A  S  G  Q  S  Y  E  S  L  P  S  T  Q  L  V  W  R  Q  P  Q  A  S  W  S  *  K  W  S  G  I  *  Q  T  D  S  Y  G  Q  G  C  G  C  Y  N  C  P  E  G  F  I  L  F  F  R  E  F  E  V  E  G  T  *  R  R  A  T  F  R  C  S  W  L  E  S  I  D  P  P  L  A  L  S  T   : A  S  W  E  R  S  V  A  K  T  L  V  E  F  V  C  S  *  Q  Y  K  S  S  S  S  P  P  S  S  *  S  Y  Q  A  R  D  W  R  G  W  W  W  F  N  N  H  *  L  T  E  T  L  W  L  S  V  E  Y  C  L  W  T  I  T  I  I  *  W :   S  S  S  T  G  I  A  A  D  S  G  D  L  N  L  P  C  Y  Q  P  L  C  S  C  Q  S  S  F  L  L  *  S  L  A  Y  S  R  V  V  R  C  E  V  F  G  K  *  E  G  Q  R  Q  G  E  N  C  *  R  R  S  L  Q  S  F  *  K  L  *  Q  E  G  Y  S  I  G  F  V  S  E  A  L  E  P  A  T  F  F  A  Q  H  S  T  S  *  T   : G  H  G  T  P  S  S  S  C  L  Y  C  C  I  Q  D  G  V  S  V  S  F  *  R  N  S  R  P  F  S  *  *  N  S  R  G  F  *  *  S  *  W  Q  *  N  Y  E  *  Y  T  E  R  S  C  V  A  R  H  K  V  P  S  R  *  *  R  H  W  F  C  Q  P  C  I  *  C  Q  W  K  H  N  H  S  *  H  L  L  A  A  A  T  F  *  F  A  Q  S  L  L  S  S  W  S  *  R  :  T  L  R  *  S  L  H  A  C  G  *  G  V  E  E  A  S  L  S  C  C  S  P  S  E  V  L  H  F  *  T  F  R  V  D  S  K  A  E  Q  V  S  C  G  R  A  Y  H  T  *  E  Y  T  H  A  G  I  E  R  W  I  Y  G  W  S  C  G  P  S  C  T  T  D  S  *  F  T  K  Y  S  F  C  *  W  Q  Y  R  H  I  Y  G  G  R  T  *  *  A  *  H  H  V  E  V  K  C  C  T  R  T  F  V  G  R  P  E  *  M  H  R  H  H  G  V  R  A  H  P  E  H  F  F  F  S  Y  V  K  Y  Q  H  W  G  A  Y  K  *  S  R  C  F  I  C  I  F  S  I  A  P  W  N  S  A  S  V  T  F  Y  *  G  F  L  C  S  V  *  E  A  S  G  K  H  L  Y  Y  A  A  R  S  Y  E  C  N  C  K  R  S  E  R  V  S  R  Y  F  S  Q  V  V  L  Q  V  C  W  *  F  T  *  K  S  R  W  C  C  N  I  C  K  I  C  G  K  A  *  A  L  A  *  R  F  C  Q  A  E  P  R  L  T  G  E  I  T  L  C  D  A  E  S  P  T  A  H  *  F  *  Q  *  K  S  L  F  S  L  E  N  K  A  A  A  *  T  A  P  L  R  S  S  A  N  *  R  S  A  G  L  C  V  G  G  F  L  *  S  V  A  Y  A  T  Q  S  R  P  E  R  T  V  K  C  A  F  S  R  *  R  G  Y  *  C  W  W  F  D  E  R  V  V  S  I  A  I  K  G  H  I  *  Q  R  S  F  A  V  Y  D  C  W  E  *  C  N  F  P  T  *  P  K  L  C  L  S  N  *  T  S  L  I  L  Q  I  C  R  P  C   : G  C  *  S  T  I  *  R  A  V  A  G  C  S  F  Y  P  V  I  L  Q  T  Y  P  W  C  E  G  H  I  S  *  Y  R  G  C  R  S  *  L  L  *  E  L  E  V  D  A  G   : E  *  C  E  *  Y  T  R  F  D  F  *  H  G  C  R  *  G  K  T  H  S  L  *  E  N  R   : G  Y  *  L  *  A  *  T  W  R  K  K  Y  K  G  H  R  R  D  K  A  R  I  C  *  S  R  C  *  P  Y  S  D  K  C  Y  S  P  S  N  K  C  I  P  *  R  F  Q  *  I  G  T  T  *  T  Y  L  H  F  Q  *  *  G  A  *  T  F  D  K  W  S  T  R  N  *  H :   G  R  S  E  G  Q  H  *  I  Y  W  I  Y  H  G  I  Y  C  Y  S  V  V  L  G  G  R  *  R  F  *  Q  G  R  H  G  K  I  S  S  I  C  D  R  H  I  Q   : G  S  F  G  G  F  Q  S  I  A  R  D  L  W  P  S  E  I  S  D  S  Q  S  L  W  S  S  *  E  A  P  I  C  T  Y  L  :  L  Q  P  T  *  P  S  G  V  Y  F  Q  R  T  T  S  R  T  F  A  F  G  Y  P  *  G  *  *  R  I  W  F  W  L  R  Q  A  Y  L  V  Q  I  S  *  K  L  H  I  F  D  H  P  V  I  A  M  *  I :   L  A  D  R  Y  Q  L  H  K  I  D  L  E  W  Y  F  L  E  I  *  V  H  A  E  P  A  S  R  M  C  R  *  L  A  T  P  L  W  S  V  *  Y  L  E  G  S  E  L  C  I  T  S  G  E  E  L  C  Y  F  V  V  P  S  I  A  I  G  H  S  Y  S  H  P  R  V  D  K  S  V  L  F  L  S  G  G  L  V  *  E  V  Y  I  Y  F  G  K  W  V  G  C  *  F  F  H  A  L  Q  P  H  *  L  P  M  V  T  D  N  S  Y  I  T  L  *  C  Y  T  S  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27305" stop="27592"/>
                    <exon start="27764" stop="27965"/>
                    <exon start="28045" stop="28331"/>
                    <exon start="28429" stop="28742"/>
                    <exon start="28878" stop="30015"/>
                    <exon start="30110" stop="30256"/>
                    <exon start="30345" stop="30425"/>
                    <exon start="30577" stop="30802"/>
                    <exon start="30886" stop="31025"/>
                    <exon start="31464" stop="31570"/>
                    <exon start="31701" stop="31803"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>3030</number_coding_nucleotides>
                  <number_encoded_amino_acids>1010</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SALPSTLLAEAQMLRDRAMSHYQARSLFGGSHRLHGRRNGLGFDRQTVMDRGVGVTIARRASSSFSESLKLKELEGEPLLDAHGLKALIRLLRLAQPLGKGLLQRLLLNLSAHSSTRAVLVHLLLEAIKPETGGAGGGLTTINSQRLYGCQSNIVYGRSQLFDGLPPLVLRRILEILTYLATNHSAVASLLFYFDLSLIPEWSDVKCLENKRDKGKEKIVEEDPSNPFRSSNKRDIPLVLFLKLLNQPLFLRSIAHLEQVMGLLQVVVYTAASKMECQSHSEETVDRSHNETVEGSNNPDGNETMSDIQKDPALPDIKSPQDDSGTGSANPASDANGSTIIHDIFLQLPHSDLHNLCCLLGHEGLSDKVYMLAGEVLKKLASVAAPHRKFFISELSELTQRLSKSAVEELITLKNTHMLGLSAGSMAGAAVLRVLQTLSSLSTASADGNTDTSMEEEHDEHNIMWKLNVALEPLWEGLSECIGTMELELTQSTSSSVMSSTNTGEHINEAGASSVSSPLPPGTQRLLPFIEAFFVLCEKLQANISIMQQDHMNATAREVKELAGTSVKLSSKSVGDSHKRVDGAVTFVRFAEKHRRLLNAFVRQNPGLLEKSLCVMLKAPRLIDFDNKRAYFRSRIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRPNQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNATFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDADEEKLILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVADHILTNAIRPQINAFLEGFSELVPRELISIFNDKELELLISGLPEIDMEDLKANTEYTGYTTASTAIQWFWEVVKGFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRFQIHKAYGAPERLPSAHTCFNQLDLPEYTSKEQLQERLLLAIHEASEGFGFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="43781" PGL_stop="39486"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43781" e_stop="43705"/>
            <exon e_start="43614" e_stop="43405"/>
            <exon e_start="41754" e_stop="41568"/>
            <exon e_start="41484" e_stop="41377"/>
            <exon e_start="40604" e_stop="40289"/>
            <exon e_start="40234" e_stop="40191"/>
            <exon e_start="39786" e_stop="39727"/>
            <exon e_start="39582" e_stop="39486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.974"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.182" e_score="0.591"/>
          <exon-intron don_prob="0.000" acc_prob="0.040" e_score="0.517"/>
          <exon-only e_score="0.485"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="43781" e_stop="43705" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="43704" i_stop="43615" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43614" e_stop="43405" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43404" i_stop="41755" i_length="1650"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41754" e_stop="41568" e_length="187"/>
          </exon>
          <intron i_serial="3" don_prob="0.912" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41567" i_stop="41485" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41484" e_stop="41377" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41376" i_stop="40605" i_length="772"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40604" e_stop="40289" e_length="316"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.886">
            <gDNA_intron_boundary i_start="40288" i_stop="40235" i_length="54"/>
          </intron>
          <exon e_serial="6" e_score="0.591">
            <gDNA_exon_boundary e_start="40234" e_stop="40191" e_length="44"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.182">
            <gDNA_intron_boundary i_start="40190" i_stop="39787" i_length="404"/>
          </intron>
          <exon e_serial="7" e_score="0.517">
            <gDNA_exon_boundary e_start="39786" e_stop="39727" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.040">
            <gDNA_intron_boundary i_start="39726" i_stop="39583" i_length="144"/>
          </intron>
          <exon e_serial="8" e_score="0.485">
            <gDNA_exon_boundary e_start="39582" e_stop="39486" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43781" stop="43705"/>
              <exon start="43614" stop="43405"/>
              <exon start="41754" stop="41568"/>
              <exon start="41484" stop="41377"/>
              <exon start="40604" stop="40289"/>
              <exon start="40234" stop="40191"/>
              <exon start="39786" stop="39727"/>
              <exon start="39582" stop="39486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGTCAAACAAACACAACAAAAATCGTACAAATTTCAAACTCTTGTCCAAAATCCCAATTTTTTCGCCAAGAAAAG : ATGAGAATTGGGTCATTGAAAGTTTGGATCTTGGTGACTATATTGGTGGTGGCATGGAGATGTGGAGGGGTTTATGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTTTCACATAAAGTTCAAATGGGAGAATCAGTCCATTTTTCGTTTGTTGTTATCAAATCAGAAGGTTCTTGGCATTATAGTGAAGAGGGTGTTGACCTTGTG : GTGAAGGGACCTTCCGGGGAGCAGCTTCATGATTTTCGTGACAAAATAAGTGAGAAGAACGAGTTTGTGGCCCATCATGAAGGAGTTTATCGTTTCTGTTTCACCAACAAGTCACCCTATCATGAAACCATAGACTTTGATCTACATGCTGCCCACTTCTCATACCACGACGAGCACGCAAAAGATG : AGCATTTCAAACCGTTGTTTGAGCACATTGGACAACTAGAGGAAGCTTTATACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCCCAGACAGACCGACAAGCAATAG : TGAATGAAATAATGAGCAAAAGAGCCGTCTACAAAGCTTTGCTCGAGTCTTCTGCTCTCATTGGCGTTAGCATTCTACAAGTCTACCTTCTAAAGCATCTTTTCGAACGAAAGCTGGGGCAATCCAGAGTTTAGGTTTTGACAGAACTGAAGATATTTATACTGCTGATCATCTTTGAACTTCAAATGCATTCCCTTTATGTACTGTAAAAACTAGAATGAACAGTTTTTGCCAGAGATTAAAGTTTTTATATTTCCTTTAGTTGAATGTTGAAAGCTCAATAATCTCAAATGAAAAATTACAATTCCTTTTGGAA : TTTTGAAATAAACAAAAAACAACTACATTGGCAAACCACAACTG : GTAAAATAAAAAGATACAACATATAGGTACAACATCAAACATTTTTGTCTTTCATATTTT : ATTCTGCATGAGGGCTCTGCATACAGCAAAACCATTTTTTCTGCAAAACGACAAATATATTGGTGAAATTATTAATAAGAATGCTTCAAAGATTAAT</gDNA_template>
            <first_frame> *  V  K  Q  T  Q  Q  K  S  Y  K  F  Q  T  L  V  Q  N  P  N  F  F  A  K  K  R :   *  E  L  G  H  *  K  F  G  S  W  *  L  Y  W  W  W  H  G  D  V  E  G  F  M  E  L  D  L  *  L  I  E  K  N  V  F  H  I  K  F  K  W  E  N  Q  S  I  F  R  L  L  L  S  N  Q  K  V  L  G  I  I  V  K  R  V  L  T  L  W :   *  R  D  L  P  G  S  S  F  M  I  F  V  T  K  *  V  R  R  T  S  L  W  P  I  M  K  E  F  I  V  S  V  S  P  T  S  H  P  I  M  K  P  *  T  L  I  Y  M  L  P  T  S  H  T  T  T  S  T  Q  K  M  :  S  I  S  N  R  C  L  S  T  L  D  N  *  R  K  L  Y  T  T  F  S  L  S  S  I  G  S  R  P  R  Q  T  D  K  Q  *  :  *  M  K  *  *  A  K  E  P  S  T  K  L  C  S  S  L  L  L  S  L  A  L  A  F  Y  K  S  T  F  *  S  I  F  S  N  E  S  W  G  N  P  E  F  R  F  *  Q  N  *  R  Y  L  Y  C  *  S  S  L  N  F  K  C  I  P  F  M  Y  C  K  N  *  N  E  Q  F  L  P  E  I  K  V  F  I  F  P  L  V  E  C  *  K  L  N  N  L  K  *  K  I  T  I  P  F  G   : I  L  K  *  T  K  N  N  Y  I  G  K  P  Q  L  :  V  K  *  K  D  T  T  Y  R  Y  N  I  K  H  F  C  L  S  Y  F  :  I  L  H  E  G  S  A  Y  S  K  T  I  F  S  A  K  R  Q  I  Y  W  *  N  Y  *  *  E  C  F  K  D  *  </first_frame>
            <second_frame>  K  S  N  K  H  N  K  N  R  T  N  F  K  L  L  S  K  I  P  I  F  S  P  R  K   : D  E  N  W  V  I  E  S  L  D  L  G  D  Y  I  G  G  G  M  E  M  W  R  G  L  W  N  *  I  C  D  *  *  R  R  M  F  F  T  *  S  S  N  G  R  I  S  P  F  F  V  C  C  Y  Q  I  R  R  F  L  A  L  *  *  R  G  C  *  P  C   : G  E  G  T  F  R  G  A  A  S  *  F  S  *  Q  N  K  *  E  E  R  V  C  G  P  S  *  R  S  L  S  F  L  F  H  Q  Q  V  T  L  S  *  N  H  R  L  *  S  T  C  C  P  L  L  I  P  R  R  A  R  K  R  * :   A  F  Q  T  V  V  *  A  H  W  T  T  R  G  S  F  I  Q  H  S  V  *  A  A  L  A  R  G  P  D  R  P  T  S  N  S :   E  *  N  N  E  Q  K  S  R  L  Q  S  F  A  R  V  F  C  S  H  W  R  *  H  S  T  S  L  P  S  K  A  S  F  R  T  K  A  G  A  I  Q  S  L  G  F  D  R  T  E  D  I  Y  T  A  D  H  L  *  T  S  N  A  F  P  L  C  T  V  K  T  R  M  N  S  F  C  Q  R  L  K  F  L  Y  F  L  *  L  N  V  E  S  S  I  I  S  N  E  K  L  Q  F  L  L  E  :  F  *  N  K  Q  K  T  T  T  L  A  N  H  N  W :   *  N  K  K  I  Q  H  I  G  T  T  S  N  I  F  V  F  H  I  L :   F  C  M  R  A  L  H  T  A  K  P  F  F  L  Q  N  D  K  Y  I  G  E  I  I  N  K  N  A  S  K  I  N </second_frame>
            <third_frame>   S  Q  T  N  T  T  K  I  V  Q  I  S  N  S  C  P  K  S  Q  F  F  R  Q  E  K  :  M  R  I  G  S  L  K  V  W  I  L  V  T  I  L  V  V  A  W  R  C  G  G  V  Y  G  I  R  F  V  I  D  R  E  E  C  F  S  H  K  V  Q  M  G  E  S  V  H  F  S  F  V  V  I  K  S  E  G  S  W  H  Y  S  E  E  G  V  D  L  V  :  V  K  G  P  S  G  E  Q  L  H  D  F  R  D  K  I  S  E  K  N  E  F  V  A  H  H  E  G  V  Y  R  F  C  F  T  N  K  S  P  Y  H  E  T  I  D  F  D  L  H  A  A  H  F  S  Y  H  D  E  H  A  K  D   : E  H  F  K  P  L  F  E  H  I  G  Q  L  E  E  A  L  Y  N  I  Q  F  E  Q  H  W  L  E  A  Q  T  D  R  Q  A  I   : V  N  E  I  M  S  K  R  A  V  Y  K  A  L  L  E  S  S  A  L  I  G  V  S  I  L  Q  V  Y  L  L  K  H  L  F  E  R  K  L  G  Q  S  R  V  *  V  L  T  E  L  K  I  F  I  L  L  I  I  F  E  L  Q  M  H  S  L  Y  V  L  *  K  L  E  *  T  V  F  A  R  D  *  S  F  Y  I  S  F  S  *  M  L  K  A  Q  *  S  Q  M  K  N  Y  N  S  F  W  N :   F  E  I  N  K  K  Q  L  H  W  Q  T  T  T   : G  K  I  K  R  Y  N  I  *  V  Q  H  Q  T  F  L  S  F  I  F   : Y  S  A  *  G  L  C  I  Q  Q  N  H  F  F  C  K  T  T  N  I  L  V  K  L  L  I  R  M  L  Q  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43779" stop="43705"/>
                    <exon start="43614" stop="43405"/>
                    <exon start="41754" stop="41568"/>
                    <exon start="41484" stop="41377"/>
                    <exon start="40604" stop="40471"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQTNTTKIVQISNSCPKSQFFRQEKMRIGSLKVWILVTILVVAWRCGGVYGIRFVIDREECFSHKVQMGESVHFSFVVIKSEGSWHYSEEGVDLVVKGPSGEQLHDFRDKISEKNEFVAHHEGVYRFCFTNKSPYHETIDFDLHAAHFSYHDEHAKDEHFKPLFEHIGQLEEALYNIQFEQHWLEAQTDRQAIVNEIMSKRAVYKALLESSALIGVSILQVYLLKHLFERKLGQSRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="52403" PGL_stop="54784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52403" e_stop="52871"/>
            <exon e_start="54610" e_stop="54784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.905" e_score="0.989"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="52403" e_stop="52871" e_length="469"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.905">
            <gDNA_intron_boundary i_start="52872" i_stop="54609" i_length="1738"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="54610" e_stop="54784" e_length="175"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52403" stop="52871"/>
              <exon start="54610" stop="54784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAACATACACAGCTTTTCTTTTTTTCTTTAGCTTTTTGTAAAACTTTCAAATCATCTCTTAATTCAAGATTCCTTGTCTTTACTGTTTGAATTTTTTTTCTTTGTTTTTGCTTATTGAAACTACCCATATCTCAATTTTTCCTCTTTTCATAGTTTCACTAACTAAATAGTGTTTTCCCCTTCAAAGGAATTGTCTTTTCTCTTCTTTTATACTTTGCTATTGAGGGTTTAGATAAAAAAAAAAAAGATTGTCTTTTGAGTGTTTGGGGCAGTTTGTTTTTGCTGTTTGGTTTGTGGGTTTGTGTTGATTAGTTGAAAGATTGACTTTTTTTTGAAGATTTTTGGTCAACCACTTTTGCTTATCTCTGAGAATTTGCTGCTTTGTATCAACCCTTTTGGCCTTTGGGAGTTAAAAGATTTGATGGTTTCTAGGGTTTATGGATGATTAGGGCTTTTCATCATTTAG : GTGATTCTGTGTAAAAGATTAAGATATGGTTTCAAAAGACCGTAATAAACCTACTGGATCTCCAAAAGTACATGTTGGGGAGATAGATACAAGTGCACCATTTCAGTCTGTCAAAGATGCTGTTAACTTGTTTGGGGAAGGTGCATTCTCAGGGGAAAAACCTGCAATCAGGAAG</gDNA_template>
            <first_frame> F  Q  H  T  Q  L  F  F  F  S  L  A  F  C  K  T  F  K  S  S  L  N  S  R  F  L  V  F  T  V  *  I  F  F  L  C  F  C  L  L  K  L  P  I  S  Q  F  F  L  F  S  *  F  H  *  L  N  S  V  F  P  F  K  G  I  V  F  S  L  L  L  Y  F  A  I  E  G  L  D  K  K  K  K  D  C  L  L  S  V  W  G  S  L  F  L  L  F  G  L  W  V  C  V  D  *  L  K  D  *  L  F  F  E  D  F  W  S  T  T  F  A  Y  L  *  E  F  A  A  L  Y  Q  P  F  W  P  L  G  V  K  R  F  D  G  F  *  G  L  W  M  I  R  A  F  H  H  L   : G  D  S  V  *  K  I  K  I  W  F  Q  K  T  V  I  N  L  L  D  L  Q  K  Y  M  L  G  R  *  I  Q  V  H  H  F  S  L  S  K  M  L  L  T  C  L  G  K  V  H  S  Q  G  K  N  L  Q  S  G   </first_frame>
            <second_frame>  F  N  I  H  S  F  S  F  F  L  *  L  F  V  K  L  S  N  H  L  L  I  Q  D  S  L  S  L  L  F  E  F  F  F  F  V  F  A  Y  *  N  Y  P  Y  L  N  F  S  S  F  H  S  F  T  N  *  I  V  F  S  P  S  K  E  L  S  F  L  F  F  Y  T  L  L  L  R  V  *  I  K  K  K  K  I  V  F  *  V  F  G  A  V  C  F  C  C  L  V  C  G  F  V  L  I  S  *  K  I  D  F  F  L  K  I  F  G  Q  P  L  L  L  I  S  E  N  L  L  L  C  I  N  P  F  G  L  W  E  L  K  D  L  M  V  S  R  V  Y  G  *  L  G  L  F  I  I  *  :  V  I  L  C  K  R  L  R  Y  G  F  K  R  P  *  *  T  Y  W  I  S  K  S  T  C  W  G  D  R  Y  K  C  T  I  S  V  C  Q  R  C  C  *  L  V  W  G  R  C  I  L  R  G  K  T  C  N  Q  E  </second_frame>
            <third_frame>   S  T  Y  T  A  F  L  F  F  F  S  F  L  *  N  F  Q  I  I  S  *  F  K  I  P  C  L  Y  C  L  N  F  F  S  L  F  L  L  I  E  T  T  H  I  S  I  F  P  L  F  I  V  S  L  T  K  *  C  F  P  L  Q  R  N  C  L  F  S  S  F  I  L  C  Y  *  G  F  R  *  K  K  K  R  L  S  F  E  C  L  G  Q  F  V  F  A  V  W  F  V  G  L  C  *  L  V  E  R  L  T  F  F  *  R  F  L  V  N  H  F  C  L  S  L  R  I  C  C  F  V  S  T  L  L  A  F  G  S  *  K  I  *  W  F  L  G  F  M  D  D  *  G  F  S  S  F  R :   *  F  C  V  K  D  *  D  M  V  S  K  D  R  N  K  P  T  G  S  P  K  V  H  V  G  E  I  D  T  S  A  P  F  Q  S  V  K  D  A  V  N  L  F  G  E  G  A  F  S  G  E  K  P  A  I  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0309B15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="63163" PGL_stop="65088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63163" e_stop="63566"/>
            <exon e_start="64795" e_stop="64880"/>
            <exon e_start="64967" e_stop="65088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.946" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="63163" e_stop="63566" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="63567" i_stop="64794" i_length="1228"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64795" e_stop="64880" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64881" i_stop="64966" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="64967" e_stop="65088" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63163" stop="63566"/>
              <exon start="64795" stop="64880"/>
              <exon start="64967" stop="65088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAACTTATGAGTCAAAAAGCTTCAAACTCACCGTTAATGGCGAACAGAGACGATTTCATAAACCCTAACACTTCTTCTCCTGTTACTGTTTCCGATGCCGACAGCTTCCTTCTAGATTCTTCTCAGATCGGTAGCGCTTCTGGAAGCTTCCAGAACGAGGGTTTTCTCTCCGGTGCTGATGGCGGCGCCGCCGCCGCTGCTGATGCTGAGTTTGGTTTCTCCCGTCCTGATTTTCGCCAGACGCAGCTTGTTGGTACTGTTGATTTCTATGAACGCCACGTGTTCCTTTGCTATAAGAATCCTCAAGTTTGGCCTCCTCGTATTGAGGCTGCTGAGTTTGATCGATTGCCTAGGCTTCTTGCTGCTGCTCTTACCGCTCGGAAGAATGATGTTAAGAAACAG : ACTCGGTTGACAATATGTGAAGGGCATGATGGAACTGAGACATCGAATGGGGATGTGTTGATCTTTCCGGACATGATCAGATACAG : GAGATTGACTCATTTTGATGTTGACACATTTGTTGAGGAGGTGCTTGTGAAGGATGGTGAATGGTTGCCTGGAAATCCTGAAGCTCTGACTGGATGGTACATATTTGTGTGTTGTCATGGTT</gDNA_template>
            <first_frame> E  N  L  *  V  K  K  L  Q  T  H  R  *  W  R  T  E  T  I  S  *  T  L  T  L  L  L  L  L  L  F  P  M  P  T  A  S  F  *  I  L  L  R  S  V  A  L  L  E  A  S  R  T  R  V  F  S  P  V  L  M  A  A  P  P  P  L  L  M  L  S  L  V  S  P  V  L  I  F  A  R  R  S  L  L  V  L  L  I  S  M  N  A  T  C  S  F  A  I  R  I  L  K  F  G  L  L  V  L  R  L  L  S  L  I  D  C  L  G  F  L  L  L  L  L  P  L  G  R  M  M  L  R  N  R :   L  G  *  Q  Y  V  K  G  M  M  E  L  R  H  R  M  G  M  C  *  S  F  R  T  *  S  D  T   : G  D  *  L  I  L  M  L  T  H  L  L  R  R  C  L  *  R  M  V  N  G  C  L  E  I  L  K  L  *  L  D  G  T  Y  L  C  V  V  M  V </first_frame>
            <second_frame>  R  T  Y  E  S  K  S  F  K  L  T  V  N  G  E  Q  R  R  F  H  K  P  *  H  F  F  S  C  Y  C  F  R  C  R  Q  L  P  S  R  F  F  S  D  R  *  R  F  W  K  L  P  E  R  G  F  S  L  R  C  *  W  R  R  R  R  R  C  *  C  *  V  W  F  L  P  S  *  F  S  P  D  A  A  C  W  Y  C  *  F  L  *  T  P  R  V  P  L  L  *  E  S  S  S  L  A  S  S  Y  *  G  C  *  V  *  S  I  A  *  A  S  C  C  C  S  Y  R  S  E  E  *  C  *  E  T   : D  S  V  D  N  M  *  R  A  *  W  N  *  D  I  E  W  G  C  V  D  L  S  G  H  D  Q  I  Q  :  E  I  D  S  F  *  C  *  H  I  C  *  G  G  A  C  E  G  W  *  M  V  A  W  K  S  *  S  S  D  W  M  V  H  I  C  V  L  S  W   </second_frame>
            <third_frame>   E  L  M  S  Q  K  A  S  N  S  P  L  M  A  N  R  D  D  F  I  N  P  N  T  S  S  P  V  T  V  S  D  A  D  S  F  L  L  D  S  S  Q  I  G  S  A  S  G  S  F  Q  N  E  G  F  L  S  G  A  D  G  G  A  A  A  A  A  D  A  E  F  G  F  S  R  P  D  F  R  Q  T  Q  L  V  G  T  V  D  F  Y  E  R  H  V  F  L  C  Y  K  N  P  Q  V  W  P  P  R  I  E  A  A  E  F  D  R  L  P  R  L  L  A  A  A  L  T  A  R  K  N  D  V  K  K  Q  :  T  R  L  T  I  C  E  G  H  D  G  T  E  T  S  N  G  D  V  L  I  F  P  D  M  I  R  Y  R :   R  L  T  H  F  D  V  D  T  F  V  E  E  V  L  V  K  D  G  E  W  L  P  G  N  P  E  A  L  T  G  W  Y  I  F  V  C  C  H  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63165" stop="63566"/>
                    <exon start="64795" stop="64880"/>
                    <exon start="64967" stop="65087"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELMSQKASNSPLMANRDDFINPNTSSPVTVSDADSFLLDSSQIGSASGSFQNEGFLSGADGGAAAAADAEFGFSRPDFRQTQLVGTVDFYERHVFLCYKNPQVWPPRIEAAEFDRLPRLLAAALTARKNDVKKQTRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKDGEWLPGNPEALTGWYIFVCCHG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="65241" PGL_stop="66740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65241" e_stop="65272"/>
            <exon e_start="65386" e_stop="65469"/>
            <exon e_start="66029" e_stop="66740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65241" e_stop="65272" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65273" i_stop="65385" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65386" e_stop="65469" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65470" i_stop="66028" i_length="559"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="66029" e_stop="66740" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65241" stop="65272"/>
              <exon start="65386" stop="65469"/>
              <exon start="66029" stop="66740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAACACTCACAAGGAAGTCTCCGGACACTG : GTATGGCTATGTTACACCTGATGATGTACCACAGTTGCTTGAACAGCATGTTGCTAAAGGAGAGATTGTTGATTGGTTGTGGAG : GGGCCAGATGGGGCTATCTGAAGATGAACAGAAAGCATCCCAACAACATAGGCTCAGCATTTATGGTGGAACAGATGTGGACAGAGGCACCATAAACTCAAATGATGTTGGTATTCGCACATGTGGATCCCAATTAGAGGGTATGGGCTGTTGCCAGGCAAATGGAAATGTCTCATGTTGTCAGACCACTCAACCACCAGTTGATGCAGACAATTTCAATCTCAACCAAGAGAACGCTGAGTTTACAACCGAAAAGAAGAGCAGCTTCAAGAGACAAGTTTCTCGAAGTAGCAGTGGCAAAGGGACTCGTTCTCGCAAGGTGTGCTCAATGCCTACTTGGTACGAGAGCTGGGAGCGTGAAGATACGTATGCAGTTCTTGCTGTTGTTGGTGCTGCCATATCAGTTGCCTATGCCTTCAACTGCTACAGACAGCTGAAGTAATATTATTTATAAAGAAGTTCACATTTGATTTCATTGTTGGTTAAAAACAATTATGTGCTTTGTCTAATGTAAATTTAGGTTATTGCATGTGTGTAAGTCACTTGCAATGAAGTCTAGAATTTGATTTACTTGGGGGGATAACATTTATGCCAAATAGTGTTGTAATGATAGACTATTGGTTCTGTAAATTTAGGAGCCTTCTTTTGTTTGCATGTTTCCAACACTTCCTGGTGTCTGAAGTGTTTGTTTGATCTTTGAATCTGTTGGCTC</gDNA_template>
            <first_frame> R  N  T  H  K  E  V  S  G  H  W :   Y  G  Y  V  T  P  D  D  V  P  Q  L  L  E  Q  H  V  A  K  G  E  I  V  D  W  L  W  R :   G  Q  M  G  L  S  E  D  E  Q  K  A  S  Q  Q  H  R  L  S  I  Y  G  G  T  D  V  D  R  G  T  I  N  S  N  D  V  G  I  R  T  C  G  S  Q  L  E  G  M  G  C  C  Q  A  N  G  N  V  S  C  C  Q  T  T  Q  P  P  V  D  A  D  N  F  N  L  N  Q  E  N  A  E  F  T  T  E  K  K  S  S  F  K  R  Q  V  S  R  S  S  S  G  K  G  T  R  S  R  K  V  C  S  M  P  T  W  Y  E  S  W  E  R  E  D  T  Y  A  V  L  A  V  V  G  A  A  I  S  V  A  Y  A  F  N  C  Y  R  Q  L  K  *  Y  Y  L  *  R  S  S  H  L  I  S  L  L  V  K  N  N  Y  V  L  C  L  M  *  I  *  V  I  A  C  V  *  V  T  C  N  E  V  *  N  L  I  Y  L  G  G  *  H  L  C  Q  I  V  L  *  *  *  T  I  G  S  V  N  L  G  A  F  F  C  L  H  V  S  N  T  S  W  C  L  K  C  L  F  D  L  *  I  C  W  L </first_frame>
            <second_frame>  E  T  L  T  R  K  S  P  D  T   : G  M  A  M  L  H  L  M  M  Y  H  S  C  L  N  S  M  L  L  K  E  R  L  L  I  G  C  G   : G  A  R  W  G  Y  L  K  M  N  R  K  H  P  N  N  I  G  S  A  F  M  V  E  Q  M  W  T  E  A  P  *  T  Q  M  M  L  V  F  A  H  V  D  P  N  *  R  V  W  A  V  A  R  Q  M  E  M  S  H  V  V  R  P  L  N  H  Q  L  M  Q  T  I  S  I  S  T  K  R  T  L  S  L  Q  P  K  R  R  A  A  S  R  D  K  F  L  E  V  A  V  A  K  G  L  V  L  A  R  C  A  Q  C  L  L  G  T  R  A  G  S  V  K  I  R  M  Q  F  L  L  L  L  V  L  P  Y  Q  L  P  M  P  S  T  A  T  D  S  *  S  N  I  I  Y  K  E  V  H  I  *  F  H  C  W  L  K  T  I  M  C  F  V  *  C  K  F  R  L  L  H  V  C  K  S  L  A  M  K  S  R  I  *  F  T  W  G  D  N  I  Y  A  K  *  C  C  N  D  R  L  L  V  L  *  I  *  E  P  S  F  V  C  M  F  P  T  L  P  G  V  *  S  V  C  L  I  F  E  S  V  G   </second_frame>
            <third_frame>   K  H  S  Q  G  S  L  R  T  L  :  V  W  L  C  Y  T  *  *  C  T  T  V  A  *  T  A  C  C  *  R  R  D  C  *  L  V  V  E  :  G  P  D  G  A  I  *  R  *  T  E  S  I  P  T  T  *  A  Q  H  L  W  W  N  R  C  G  Q  R  H  H  K  L  K  *  C  W  Y  S  H  M  W  I  P  I  R  G  Y  G  L  L  P  G  K  W  K  C  L  M  L  S  D  H  S  T  T  S  *  C  R  Q  F  Q  S  Q  P  R  E  R  *  V  Y  N  R  K  E  E  Q  L  Q  E  T  S  F  S  K  *  Q  W  Q  R  D  S  F  S  Q  G  V  L  N  A  Y  L  V  R  E  L  G  A  *  R  Y  V  C  S  S  C  C  C  W  C  C  H  I  S  C  L  C  L  Q  L  L  Q  T  A  E  V  I  L  F  I  K  K  F  T  F  D  F  I  V  G  *  K  Q  L  C  A  L  S  N  V  N  L  G  Y  C  M  C  V  S  H  L  Q  *  S  L  E  F  D  L  L  G  G  I  T  F  M  P  N  S  V  V  M  I  D  Y  W  F  C  K  F  R  S  L  L  L  F  A  C  F  Q  H  F  L  V  S  E  V  F  V  *  S  L  N  L  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65241" stop="65272"/>
                    <exon start="65386" stop="65469"/>
                    <exon start="66029" stop="66470"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNTHKEVSGHWYGYVTPDDVPQLLEQHVAKGEIVDWLWRGQMGLSEDEQKASQQHRLSIYGGTDVDRGTINSNDVGIRTCGSQLEGMGCCQANGNVSCCQTTQPPVDADNFNLNQENAEFTTEKKSSFKRQVSRSSSGKGTRSRKVCSMPTWYESWEREDTYAVLAVVGAAISVAYAFNCYRQLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="71980" PGL_stop="67139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71980" e_stop="71671"/>
            <exon e_start="71568" e_stop="71540"/>
            <exon e_start="70495" e_stop="70412"/>
            <exon e_start="70311" e_stop="70258"/>
            <exon e_start="70134" e_stop="70057"/>
            <exon e_start="69924" e_stop="69871"/>
            <exon e_start="69741" e_stop="69682"/>
            <exon e_start="69594" e_stop="69499"/>
            <exon e_start="68439" e_stop="68337"/>
            <exon e_start="68258" e_stop="68178"/>
            <exon e_start="67681" e_stop="67139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.519" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.549" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.558" e_score="0.961"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71980" e_stop="71671" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71670" i_stop="71569" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71568" e_stop="71540" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71539" i_stop="70496" i_length="1044"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70495" e_stop="70412" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.519">
            <gDNA_intron_boundary i_start="70411" i_stop="70312" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70311" e_stop="70258" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.984">
            <gDNA_intron_boundary i_start="70257" i_stop="70135" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70134" e_stop="70057" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70056" i_stop="69925" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69924" e_stop="69871" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.799" acc_prob="0.549">
            <gDNA_intron_boundary i_start="69870" i_stop="69742" i_length="129"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69741" e_stop="69682" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.882" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69681" i_stop="69595" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69594" e_stop="69499" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.947">
            <gDNA_intron_boundary i_start="69498" i_stop="68440" i_length="1059"/>
          </intron>
          <exon e_serial="9" e_score="0.961">
            <gDNA_exon_boundary e_start="68439" e_stop="68337" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.908" acc_prob="0.558">
            <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68258" e_stop="68178" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496"/>
          </intron>
          <exon e_serial="11" e_score="0.996">
            <gDNA_exon_boundary e_start="67681" e_stop="67139" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71980" stop="71671"/>
              <exon start="71568" stop="71540"/>
              <exon start="70495" stop="70412"/>
              <exon start="70311" stop="70258"/>
              <exon start="70134" stop="70057"/>
              <exon start="69924" stop="69871"/>
              <exon start="69741" stop="69682"/>
              <exon start="69594" stop="69499"/>
              <exon start="68439" stop="68337"/>
              <exon start="68258" stop="68178"/>
              <exon start="67681" stop="67139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318286" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGCCTAAATTTAAGAAGATCTGACAATGAAGCAGCACCTTCAATTCTTGAGTCACTGTCCTATGAGGAAGAGGGAGGAGAGTGGAAATTGAGAACTTAAAGAAAAAGTTGCTTTTTTTTTCTTCACAAAATACAACAACCCCTCTTCCTCTTTAGACCCAAAATCTAGGGAAAAAGCAAGATTTTGAGGTTTTTTGATAATTTTAGGAGGTGGGTGTGAATCTTTTTTGGGTAAATTTATAGTGGGATCAAGAATGGTGTGTATAACTGAAGATATGATTAAGCAATTGCAGACTTCAATGGATGAAA : TTGCTGAGCCACTTCAGAAAACTTTCCAG : AATGTATATCAGGGGTATCGAACCGAGACACTGGTGAGGTTTCTCAAAGCTAGAGATGGCAGTGTGTCTAAAGCACACAAGATG : CTTGTTGACTGTTTAAATTGGAGGATAGACAATGAGATCGATCAGATACTTGCA : AAGCCAATTGTACCCACTGATTTTTATAGAGGAGTGAGGGACACTCAGCTTGTGGGGATGTCTGGATATACAAGAGAG : GGTCTTCCCGTCGTTGCTGTTGGAGTAGGCCTCAGCACATACGACAAAGCATCG : ATTCACTACTATATTCAATCACATATCCAAATGAATGAATACCGTGACCGTATAATATTG : CCGTCTGCATCAAAGAAATTTGGGCGGTATATTGGGACCTGTGTTAAGGTTTTGGACATGACTGGTCTAAAGCTTTCTGCGCTAAACCAAATTAAG : CTCTTAACTGCTATATCTACCATGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG : GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG : ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATCCACATTCCATAGAATGGGGGAGAAAAACGGAATTTGTCAATCATTTCATGAAATAAAGATCAATGGCGATTGAAGCTGATTCGCTGTAGTCTTGGTAACTGCTTATTTTGAATCCAGACGAGAGGATTTAAGTAAGCGTTGTTATAGTACTAATATGGCTTGCATCATCTCGATGCAGGATTTAGTTAGAAGCTAAGTTGTAACATGGCATTTACGCTACCTTGGAGTGGACTATCATATGAATAGTCAAAAATGTTTATGCTCCCCACAAAGTATTTTACGCGAATTTCGCTGA</gDNA_template>
            <first_frame> F  A  *  I  *  E  D  L  T  M  K  Q  H  L  Q  F  L  S  H  C  P  M  R  K  R  E  E  S  G  N  *  E  L  K  E  K  V  A  F  F  F  F  T  K  Y  N  N  P  S  S  S  L  D  P  K  S  R  E  K  A  R  F  *  G  F  L  I  I  L  G  G  G  C  E  S  F  L  G  K  F  I  V  G  S  R  M  V  C  I  T  E  D  M  I  K  Q  L  Q  T  S  M  D  E   : I  A  E  P  L  Q  K  T  F  Q  :  N  V  Y  Q  G  Y  R  T  E  T  L  V  R  F  L  K  A  R  D  G  S  V  S  K  A  H  K  M  :  L  V  D  C  L  N  W  R  I  D  N  E  I  D  Q  I  L  A  :  K  P  I  V  P  T  D  F  Y  R  G  V  R  D  T  Q  L  V  G  M  S  G  Y  T  R  E  :  G  L  P  V  V  A  V  G  V  G  L  S  T  Y  D  K  A  S  :  I  H  Y  Y  I  Q  S  H  I  Q  M  N  E  Y  R  D  R  I  I  L  :  P  S  A  S  K  K  F  G  R  Y  I  G  T  C  V  K  V  L  D  M  T  G  L  K  L  S  A  L  N  Q  I  K  :  L  L  T  A  I  S  T  M  M  T  L  N  Y  P  *  E  D  R  Y  I  L  H  C  *  C  S  I  H  I  L  S  L  L  E   : G  C  E  T  S  F  T  R  K  N  *  K  E  S  P  S  A  L  R  L  G  K  R  *  T  V  E   : D  N  G  L  C  I  A  T  T  L  L  *  K  R  R  L  G  F  I  *  T  W  *  K  W  Y  K  *  *  L  F  L  L  *  S  R  F  S  S  A  T  L  *  L  Y  *  A  T  S  S  S  I  R  G  C  S  T  K  Q  R  R  I  C  P  C  D  L  T  *  A  *  S  R  *  C  K  D  C  *  N  N  *  I  H  I  P  *  N  G  G  E  K  R  N  L  S  I  I  S  *  N  K  D  Q  W  R  L  K  L  I  R  C  S  L  G  N  C  L  F  *  I  Q  T  R  G  F  K  *  A  L  L  *  Y  *  Y  G  L  H  H  L  D  A  G  F  S  *  K  L  S  C  N  M  A  F  T  L  P  W  S  G  L  S  Y  E  *  S  K  M  F  M  L  P  T  K  Y  F  T  R  I  S  L  </first_frame>
            <second_frame>  L  P  K  F  K  K  I  *  Q  *  S  S  T  F  N  S  *  V  T  V  L  *  G  R  G  R  R  V  E  I  E  N  L  K  K  K  L  L  F  F  S  S  Q  N  T  T  T  P  L  P  L  *  T  Q  N  L  G  K  K  Q  D  F  E  V  F  *  *  F  *  E  V  G  V  N  L  F  W  V  N  L  *  W  D  Q  E  W  C  V  *  L  K  I  *  L  S  N  C  R  L  Q  W  M  K  :  L  L  S  H  F  R  K  L  S  R :   M  Y  I  R  G  I  E  P  R  H  W  *  G  F  S  K  L  E  M  A  V  C  L  K  H  T  R  C :   L  L  T  V  *  I  G  G  *  T  M  R  S  I  R  Y  L  Q :   S  Q  L  Y  P  L  I  F  I  E  E  *  G  T  L  S  L  W  G  C  L  D  I  Q  E  R :   V  F  P  S  L  L  L  E  *  A  S  A  H  T  T  K  H  R :   F  T  T  I  F  N  H  I  S  K  *  M  N  T  V  T  V  *  Y  C :   R  L  H  Q  R  N  L  G  G  I  L  G  P  V  L  R  F  W  T  *  L  V  *  S  F  L  R  *  T  K  L  S :   S  *  L  L  Y  L  P  *  *  P  *  I  I  P  E  K  T  D  T  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  R  P  L  L  Q  E  R  T  K  K  K  V  Q  V  L  S  G  S  G  K  D  E  L  L  K  :  I  M  D  Y  A  S  L  P  H  F  C  K  R  E  G  S  G  S  S  K  H  G  R  N  G  T  N  D  N  C  F  S  F  D  H  A  F  H  Q  Q  L  Y  D  Y  T  K  Q  Q  A  L  A  L  E  A  V  A  P  S  K  E  G  S  V  H  V  T  L  P  E  P  D  P  D  D  A  K  I  A  E  T  I  E  S  T  F  H  R  M  G  E  K  N  G  I  C  Q  S  F  H  E  I  K  I  N  G  D  *  S  *  F  A  V  V  L  V  T  A  Y  F  E  S  R  R  E  D  L  S  K  R  C  Y  S  T  N  M  A  C  I  I  S  M  Q  D  L  V  R  S  *  V  V  T  W  H  L  R  Y  L  G  V  D  Y  H  M  N  S  Q  K  C  L  C  S  P  Q  S  I  L  R  E  F  R  * </second_frame>
            <third_frame>   C  L  N  L  R  R  S  D  N  E  A  A  P  S  I  L  E  S  L  S  Y  E  E  E  G  G  E  W  K  L  R  T  *  R  K  S  C  F  F  F  L  H  K  I  Q  Q  P  L  F  L  F  R  P  K  I  *  G  K  S  K  I  L  R  F  F  D  N  F  R  R  W  V  *  I  F  F  G  *  I  Y  S  G  I  K  N  G  V  Y  N  *  R  Y  D  *  A  I  A  D  F  N  G  *  N :   C  *  A  T  S  E  N  F  P   : E  C  I  S  G  V  S  N  R  D  T  G  E  V  S  Q  S  *  R  W  Q  C  V  *  S  T  Q  D   : A  C  *  L  F  K  L  E  D  R  Q  *  D  R  S  D  T  C   : K  A  N  C  T  H  *  F  L  *  R  S  E  G  H  S  A  C  G  D  V  W  I  Y  K  R   : G  S  S  R  R  C  C  W  S  R  P  Q  H  I  R  Q  S  I   : D  S  L  L  Y  S  I  T  Y  P  N  E  *  I  P  *  P  Y  N  I   : A  V  C  I  K  E  I  W  A  V  Y  W  D  L  C  *  G  F  G  H  D  W  S  K  A  F  C  A  K  P  N  *   : A  L  N  C  Y  I  Y  H  D  D  P  K  L  S  L  R  R  Q  I  H  I  T  L  L  M  L  H  T  Y  S  Q  P  A  G  R :   L  *  D  L  F  Y  K  K  E  L  K  R  K  S  K  C  S  P  A  R  E  K  M  N  C  *  R :   *  W  I  M  H  R  Y  H  T  F  V  K  E  K  A  R  V  H  L  N  M  V  E  M  V  Q  M  I  T  V  S  P  L  I  T  L  F  I  S  N  S  M  I  I  L  S  N  K  L  *  H  *  R  L  *  H  Q  A  K  K  D  L  S  M  *  P  Y  L  S  L  I  Q  M  M  Q  R  L  L  K  Q  L  N  P  H  S  I  E  W  G  R  K  T  E  F  V  N  H  F  M  K  *  R  S  M  A  I  E  A  D  S  L  *  S  W  *  L  L  I  L  N  P  D  E  R  I  *  V  S  V  V  I  V  L  I  W  L  A  S  S  R  C  R  I  *  L  E  A  K  L  *  H  G  I  Y  A  T  L  E  W  T  I  I  *  I  V  K  N  V  Y  A  P  H  K  V  F  Y  A  N  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71791" stop="71671"/>
                    <exon start="71568" stop="71540"/>
                    <exon start="70495" stop="70412"/>
                    <exon start="70311" stop="70258"/>
                    <exon start="70134" stop="70057"/>
                    <exon start="69924" stop="69871"/>
                    <exon start="69741" stop="69682"/>
                    <exon start="69594" stop="69499"/>
                    <exon start="68439" stop="68395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFLIILGGGCESFLGKFIVGSRMVCITEDMIKQLQTSMDEIAEPLQKTFQNVYQGYRTETLVRFLKARDGSVSKAHKMLVDCLNWRIDNEIDQILAKPIVPTDFYRGVRDTQLVGMSGYTREGLPVVAVGVGLSTYDKASIHYYIQSHIQMNEYRDRIILPSASKKFGRYIGTCVKVLDMTGLKLSALNQIKLLTAISTMMTLNYP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68405" stop="68337"/>
                    <exon start="68258" stop="68178"/>
                    <exon start="67681" stop="67361"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIPEKTDTYYIVNAPYIFSACWKVVRPLLQERTKKKVQVLSGSGKDELLKIMDYASLPHFCKREGSGSSKHGRNGTNDNCFSFDHAFHQQLYDYTKQQALALEAVAPSKEGSVHVTLPEPDPDDAKIAETIESTFHRMGEKNGICQSFHEIKINGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68393" e_stop="68337"/>
            <exon e_start="68258" e_stop="67701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.908" acc_prob="0.558" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68393" e_stop="68337" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.908" acc_prob="0.558">
            <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="68258" e_stop="67701" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68393" stop="68337"/>
              <exon start="68258" stop="67701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG : GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAGGTAAGATGTCTTTTTTCTTTTGAGTGGAAGGATCAAATACACCAGCTGAACTATCACCAAATGTTTATCAAAACACACCTCAACTATTAGTTTTTCCATTATCACACCCAAACCAAGTAGGAAAAGGGAAAAACTTCTAGTTGAGTGTGTGTTTCGATACACAATTAATGATAGTTCAGCTAGAAAGGTAGTTTAGGTATGGAACTCGAAAAGTGGAATTCTTCATTTGTGTTTTTGACCCTTCCAACAATTTTTTTCTTATTATGAGTTATCAAAGGTAAGATGATGTTCTTTAAGTCGATTGCCTTTTATCCGTTGATTCTCTCACTTCAGGAGAGGCTTACTGTTGCAGATGAACTCAATACTATTCTTTGTAGTTTGTAGAATCCATCTTTATTCGCATTAATAATGTTTGGTCATATACCTCGTGTTTCTGAGGAATACTATACTTGACTTCAAATCTAACTAGAATTATCT</gDNA_template>
            <first_frame> K  T  D  T  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  R  P  L  L  Q  E  R  T  K  K  K  V  Q  V  L  S  G  S  G  K  D  E  L  L  K  V  R  C  L  F  S  F  E  W  K  D  Q  I  H  Q  L  N  Y  H  Q  M  F  I  K  T  H  L  N  Y  *  F  F  H  Y  H  T  Q  T  K  *  E  K  G  K  T  S  S  *  V  C  V  S  I  H  N  *  *  *  F  S  *  K  G  S  L  G  M  E  L  E  K  W  N  S  S  F  V  F  L  T  L  P  T  I  F  F  L  L  *  V  I  K  G  K  M  M  F  F  K  S  I  A  F  Y  P  L  I  L  S  L  Q  E  R  L  T  V  A  D  E  L  N  T  I  L  C  S  L  *  N  P  S  L  F  A  L  I  M  F  G  H  I  P  R  V  S  E  E  Y  Y  T  *  L  Q  I  *  L  E  L  S </first_frame>
            <second_frame>  R  Q  I  H  I  T  L  L  M  L  H  T  Y  S  Q  P  A  G  R :   L  *  D  L  F  Y  K  K  E  L  K  R  K  S  K  C  S  P  A  R  E  K  M  N  C  *  R  *  D  V  F  F  L  L  S  G  R  I  K  Y  T  S  *  T  I  T  K  C  L  S  K  H  T  S  T  I  S  F  S  I  I  T  P  K  P  S  R  K  R  E  K  L  L  V  E  C  V  F  R  Y  T  I  N  D  S  S  A  R  K  V  V  *  V  W  N  S  K  S  G  I  L  H  L  C  F  *  P  F  Q  Q  F  F  S  Y  Y  E  L  S  K  V  R  *  C  S  L  S  R  L  P  F  I  R  *  F  S  H  F  R  R  G  L  L  L  Q  M  N  S  I  L  F  F  V  V  C  R  I  H  L  Y  S  H  *  *  C  L  V  I  Y  L  V  F  L  R  N  T  I  L  D  F  K  S  N  *  N  Y   </second_frame>
            <third_frame>   D  R  Y  I  L  H  C  *  C  S  I  H  I  L  S  L  L  E   : G  C  E  T  S  F  T  R  K  N  *  K  E  S  P  S  A  L  R  L  G  K  R  *  T  V  E  G  K  M  S  F  F  F  *  V  E  G  S  N  T  P  A  E  L  S  P  N  V  Y  Q  N  T  P  Q  L  L  V  F  P  L  S  H  P  N  Q  V  G  K  G  K  N  F  *  L  S  V  C  F  D  T  Q  L  M  I  V  Q  L  E  R  *  F  R  Y  G  T  R  K  V  E  F  F  I  C  V  F  D  P  S  N  N  F  F  L  I  M  S  Y  Q  R  *  D  D  V  L  *  V  D  C  L  L  S  V  D  S  L  T  S  G  E  A  Y  C  C  R  *  T  Q  Y  Y  S  L  *  F  V  E  S  I  F  I  R  I  N  N  V  W  S  Y  T  S  C  F  *  G  I  L  Y  L  T  S  N  L  T  R  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68393" stop="68337"/>
                    <exon start="68258" stop="68088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTDTYYIVNAPYIFSACWKVVRPLLQERTKKKVQVLSGSGKDELLKVRCLFSFEWKDQIHQLNYHQMFIKTHLNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="68880" e_stop="68337"/>
            <exon e_start="68258" e_stop="68178"/>
            <exon e_start="67681" e_stop="67434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.908" acc_prob="0.558" e_score="0.991"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="68880" e_stop="68337" e_length="544"/>
          </exon>
          <intron i_serial="1" don_prob="0.908" acc_prob="0.558">
            <gDNA_intron_boundary i_start="68336" i_stop="68259" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68258" e_stop="68178" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68177" i_stop="67682" i_length="496"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="67681" e_stop="67434" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68880" stop="68337"/>
              <exon start="68258" stop="68178"/>
              <exon start="67681" stop="67434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAAACTAAAAACATAGCAGAATGGAAGAAAAGATCTATACAGGTGATCCAACTAGTTAAGAAACTTATGTTTTTCAAGAGTCTTTTTGGTCTTGTTAATACTTAGATGTGGATGTGGCATTCACCCGAGGCCTGGTGGCTATAACAAGGTGGTGTCTAGCCCAATTTGTGTGTGCCTCGATAATTCCACCGAATATTTTCTACCTCGCACCAACATAGGCGTTGAATAAATAACTACCGAAGGCTTAGGCAGGAAGAAAAATAGTTATTAGTTTGTTGTAGAAAACAAATCATTTGTTACTGGAATCAAAATGAATGTAGAGTATCATATAGCTGATTCCAATTACTTTGGGATTGAGACATTTGATTGATATTGATTATTGAAATGATTTATTCATTCATCTTTTTTAAACTTGACATTTTGTTTATTCCTCTTGTAGCTCTTAACTGCTATATCTACCATGATGACCCTAAATTATCCCTGAGAAGACAGATACATATTACATTGTTAATGCTCCATACATATTCTCAGCCTGCTGGAAG : GTTGTGAGACCTCTTTTACAAGAAAGAACTAAAAAGAAAGTCCAAGTGCTCTCCGGCTCGGGAAAAGATGAACTGTTGAAG : ATAATGGATTATGCATCGCTACCACACTTTTGTAAAAGAGAAGGCTCGGGTTCATCTAAACATGGTAGAAATGGTACAAATGATAACTGTTTCTCCTTTGATCACGCTTTTCATCAGCAACTCTATGATTATACTAAGCAACAAGCTCTAGCATTAGAGGCTGTAGCACCAAGCAAAGAAGGATCTGTCCATGTGACCTTACCTGAGCCTGATCCAGATGATGCAAAGATTGCTGAAACAATTGAATC</gDNA_template>
            <first_frame> L  K  L  K  T  *  Q  N  G  R  K  D  L  Y  R  *  S  N  *  L  R  N  L  C  F  S  R  V  F  L  V  L  L  I  L  R  C  G  C  G  I  H  P  R  P  G  G  Y  N  K  V  V  S  S  P  I  C  V  C  L  D  N  S  T  E  Y  F  L  P  R  T  N  I  G  V  E  *  I  T  T  E  G  L  G  R  K  K  N  S  Y  *  F  V  V  E  N  K  S  F  V  T  G  I  K  M  N  V  E  Y  H  I  A  D  S  N  Y  F  G  I  E  T  F  D  *  Y  *  L  L  K  *  F  I  H  S  S  F  L  N  L  T  F  C  L  F  L  L  *  L  L  T  A  I  S  T  M  M  T  L  N  Y  P  *  E  D  R  Y  I  L  H  C  *  C  S  I  H  I  L  S  L  L  E   : G  C  E  T  S  F  T  R  K  N  *  K  E  S  P  S  A  L  R  L  G  K  R  *  T  V  E   : D  N  G  L  C  I  A  T  T  L  L  *  K  R  R  L  G  F  I  *  T  W  *  K  W  Y  K  *  *  L  F  L  L  *  S  R  F  S  S  A  T  L  *  L  Y  *  A  T  S  S  S  I  R  G  C  S  T  K  Q  R  R  I  C  P  C  D  L  T  *  A  *  S  R  *  C  K  D  C  *  N  N  *  I </first_frame>
            <second_frame>  L  N  *  K  H  S  R  M  E  E  K  I  Y  T  G  D  P  T  S  *  E  T  Y  V  F  Q  E  S  F  W  S  C  *  Y  L  D  V  D  V  A  F  T  R  G  L  V  A  I  T  R  W  C  L  A  Q  F  V  C  A  S  I  I  P  P  N  I  F  Y  L  A  P  T  *  A  L  N  K  *  L  P  K  A  *  A  G  R  K  I  V  I  S  L  L  *  K  T  N  H  L  L  L  E  S  K  *  M  *  S  I  I  *  L  I  P  I  T  L  G  L  R  H  L  I  D  I  D  Y  *  N  D  L  F  I  H  L  F  *  T  *  H  F  V  Y  S  S  C  S  S  *  L  L  Y  L  P  *  *  P  *  I  I  P  E  K  T  D  T  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  R  P  L  L  Q  E  R  T  K  K  K  V  Q  V  L  S  G  S  G  K  D  E  L  L  K  :  I  M  D  Y  A  S  L  P  H  F  C  K  R  E  G  S  G  S  S  K  H  G  R  N  G  T  N  D  N  C  F  S  F  D  H  A  F  H  Q  Q  L  Y  D  Y  T  K  Q  Q  A  L  A  L  E  A  V  A  P  S  K  E  G  S  V  H  V  T  L  P  E  P  D  P  D  D  A  K  I  A  E  T  I  E   </second_frame>
            <third_frame>   *  T  K  N  I  A  E  W  K  K  R  S  I  Q  V  I  Q  L  V  K  K  L  M  F  F  K  S  L  F  G  L  V  N  T  *  M  W  M  W  H  S  P  E  A  W  W  L  *  Q  G  G  V  *  P  N  L  C  V  P  R  *  F  H  R  I  F  S  T  S  H  Q  H  R  R  *  I  N  N  Y  R  R  L  R  Q  E  E  K  *  L  L  V  C  C  R  K  Q  I  I  C  Y  W  N  Q  N  E  C  R  V  S  Y  S  *  F  Q  L  L  W  D  *  D  I  *  L  I  L  I  I  E  M  I  Y  S  F  I  F  F  K  L  D  I  L  F  I  P  L  V  A  L  N  C  Y  I  Y  H  D  D  P  K  L  S  L  R  R  Q  I  H  I  T  L  L  M  L  H  T  Y  S  Q  P  A  G  R :   L  *  D  L  F  Y  K  K  E  L  K  R  K  S  K  C  S  P  A  R  E  K  M  N  C  *  R :   *  W  I  M  H  R  Y  H  T  F  V  K  E  K  A  R  V  H  L  N  M  V  E  M  V  Q  M  I  T  V  S  P  L  I  T  L  F  I  S  N  S  M  I  I  L  S  N  K  L  *  H  *  R  L  *  H  Q  A  K  K  D  L  S  M  *  P  Y  L  S  L  I  Q  M  M  Q  R  L  L  K  Q  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68405" stop="68337"/>
                    <exon start="68258" stop="68178"/>
                    <exon start="67681" stop="67436"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIPEKTDTYYIVNAPYIFSACWKVVRPLLQERTKKKVQVLSGSGKDELLKIMDYASLPHFCKREGSGSSKHGRNGTNDNCFSFDHAFHQQLYDYTKQQALALEAVAPSKEGSVHVTLPEPDPDDAKIAETIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="86650" PGL_stop="80433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86650" e_stop="86534"/>
            <exon e_start="86136" e_stop="85064"/>
            <exon e_start="83009" e_stop="81902"/>
            <exon e_start="80450" e_stop="80433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.312" acc_prob="0.659" e_score="0.983"/>
          <exon-intron don_prob="0.917" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="86650" e_stop="86534" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.312" acc_prob="0.659">
            <gDNA_intron_boundary i_start="86533" i_stop="86137" i_length="397"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86136" e_stop="85064" e_length="1073"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85063" i_stop="83010" i_length="2054"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83009" e_stop="81902" e_length="1108"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81901" i_stop="80451" i_length="1451"/>
          </intron>
          <exon e_serial="4" e_score="0.778">
            <gDNA_exon_boundary e_start="80450" e_stop="80433" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86650" stop="86534"/>
              <exon start="86136" stop="85064"/>
              <exon start="83009" stop="81902"/>
              <exon start="80450" stop="80433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCTTATCTTCTTCTATGTGGTGTTTGAGTGCTCTTTAATGTCTACATTTTAATGTTTTGCTTTGTTTTAGGTTCCTGTTTCCTGGAGGAAAAAAAGGGATTTGGTTGTTTTTGAG : GAACTTTCTATGTTGTTGATGGAGCAGCTTATGTTGGTGTGTTTTTCTAATAAGAAGGGGATTAATGGCTTAAGCTTGGAGTCCGAGTGATGGGTTTGGTAAGCACAGTGTATTGAGGTATCAATATTCATTTCTATGGCCTCGACACCTTCTTCCAAGAGTTTAGCCGAAAAGCTGAACAAGACAACTGGAAATCAGACAACAGAACGGAGTTCTCGCAGGTCTACACCTTCCCAAGTTCCAAAAAATAACAAATTAGAGACCACGATTTCTAAAGAACGAGAAGTTGTATCGAAACAGCTTGTGGTAGAATCAACTGTCACCCAAAAGTCGCAGAGCAGTCAACCTAAGGGATCTTCCAACTCACTTGCTGATAAATTCGATTCAAACTTATATTTGGGCAATTCTAAGAATTCAGCTAGTGGAGTAGGTTCTATGCCTACAGAGACAAAAGGCTCACAAGGGACAGCTGATCAGGAAAGAAAGAATTCTACTAAGGACAGCTCAGCATCAGCCAAAGTTAGTGATGGGGCTAGCAGTATTGCAAAAACAAGTGGAAGTGCCAAAATTAGTGATCGAGCAGATTTTCTTGAGAGTGGTAAGAGCAGCATCTGTAGGGGGAGCACAGGAACTGACGTAAGTGAGGAGAGTACTTCTAGCAGCTTGAGCAGCAGCGTTAACAAACCCCACAAAGCTAATGACTCAAGATGGGAAGCCATTCAAGCTATCCGGACTAAAGATGGGGCATTGGATTTGAGGCACTTCCGGTTGCTGAAGAAGTTGGGAAGTGGTGATATTGGAAGTGTGTATCTGTCTGAGTTGTGTGGAACAAAGTGTTATTTTGCCATGAAAGTTATGGATAAGGCGTCGTTAGCTAGTCGTAAGAAATTGCTTCGTGCACAGACAGAAAGAGAGATTTTGCAGTCCCTGGACCATCCATTTCTCCCAACATTATATAGCCATTTTGAAACAGAAAAGTTCTCATGTCTAGTGATGGAGTTCTGCCCAGGAGGAGACCTGCACACACTCAGACAAAGACAACCAGGGAAGCATTTTTCAGAACAAGCGGTGAA : ATTCTACGTAGCAGAAGTGCTCCTTTCCCTGGAATACCTTCACATGCTTGGCATTGTCTATCGTGATCTCAAGCCAGAAAATGTGCTTGTCAGAGAAGATGGACATATAATGCTCTCTGATTTTGACCTCTCCCTTCGCTGTGCTGTCAGTCCAACACTAGTCAAGTCATCATCTCTTGAAGGTGAGCCACTGCGCAAGAATTCAGCTTATTGTGTGCAGCCAGCATGCATCGAGCCCTCTTGTATTCAGCCATCCTGTGCTGTTACTACTACATGTTTCGGGCCTCGCCTCTTTTCCAGCAAGTCAAAGAAAGAAAAGAAATCTAAAAATGAAATAGGTAACCAAGTTAGCCCATTACCAGAGCTTATTGCTGAGCCTACTGGAGCACGGTCAATGTCATTTGTCGGGACTCACGAGTACTTAGCACCCGAGATAATCAAAGGTGAAGGACACGGCAGTGCAGTAGACTGGTGGACCTTTGGTATCTTTCTATATGAGTTACTGTTTGGCAAAACACCCTTCAAGGGATCAGGAAATCGACAAACTCTTTTCAACGTTGTTGGTCAGCCCTTGCGGTTTCCAGAATCTCCAGTGGTCAGTTTCTCAGCTAGAGATCTTATCCGAGGCTTGCTCGTGAAGGAGCCTCAGCATAGACTGGCATACAAAAGAGGAGCCACAGAAATCAAGCAACATCCTTTCTTTGAAGGTGTAAATTGGGCTTTGATACGCTGCGCGAGCCCTCCTGAGATCCCAAGGCCTGTGGAATTCGAGAGAATTTCAGTTCCACCAGCAGCATCAACCAGTGAGAAAGGTGTAGCTGGAACTGTTCCTTACCAGAAGAATTCAGACAACTATCTTGAGTTTGATTTCTTCTAATCTATTTTTTATATATCTTTTTTTCCGTCGAGGCGATATTGGCTGTTCATCTTCACAAATTGAAACATAGGAAGGCTGTACAACATTTGGAAGATGTTATGTGAAGGTTTGATTAGTTTGATGATCATATTATTGTTTTGAGTTGTAATTCAACAGTTGAAAATTTGTTGCATGCCAAAACACTACAAGTTTGATGCTACCAATCGATAATGTGAATTTGTTAGTTTATTT : ACAAAACATTAAAAAAAA</gDNA_template>
            <first_frame> V  L  I  F  F  Y  V  V  F  E  C  S  L  M  S  T  F  *  C  F  A  L  F  *  V  P  V  S  W  R  K  K  R  D  L  V  V  F  E  :  E  L  S  M  L  L  M  E  Q  L  M  L  V  C  F  S  N  K  K  G  I  N  G  L  S  L  E  S  E  *  W  V  W  *  A  Q  C  I  E  V  S  I  F  I  S  M  A  S  T  P  S  S  K  S  L  A  E  K  L  N  K  T  T  G  N  Q  T  T  E  R  S  S  R  R  S  T  P  S  Q  V  P  K  N  N  K  L  E  T  T  I  S  K  E  R  E  V  V  S  K  Q  L  V  V  E  S  T  V  T  Q  K  S  Q  S  S  Q  P  K  G  S  S  N  S  L  A  D  K  F  D  S  N  L  Y  L  G  N  S  K  N  S  A  S  G  V  G  S  M  P  T  E  T  K  G  S  Q  G  T  A  D  Q  E  R  K  N  S  T  K  D  S  S  A  S  A  K  V  S  D  G  A  S  S  I  A  K  T  S  G  S  A  K  I  S  D  R  A  D  F  L  E  S  G  K  S  S  I  C  R  G  S  T  G  T  D  V  S  E  E  S  T  S  S  S  L  S  S  S  V  N  K  P  H  K  A  N  D  S  R  W  E  A  I  Q  A  I  R  T  K  D  G  A  L  D  L  R  H  F  R  L  L  K  K  L  G  S  G  D  I  G  S  V  Y  L  S  E  L  C  G  T  K  C  Y  F  A  M  K  V  M  D  K  A  S  L  A  S  R  K  K  L  L  R  A  Q  T  E  R  E  I  L  Q  S  L  D  H  P  F  L  P  T  L  Y  S  H  F  E  T  E  K  F  S  C  L  V  M  E  F  C  P  G  G  D  L  H  T  L  R  Q  R  Q  P  G  K  H  F  S  E  Q  A  V  K :   F  Y  V  A  E  V  L  L  S  L  E  Y  L  H  M  L  G  I  V  Y  R  D  L  K  P  E  N  V  L  V  R  E  D  G  H  I  M  L  S  D  F  D  L  S  L  R  C  A  V  S  P  T  L  V  K  S  S  S  L  E  G  E  P  L  R  K  N  S  A  Y  C  V  Q  P  A  C  I  E  P  S  C  I  Q  P  S  C  A  V  T  T  T  C  F  G  P  R  L  F  S  S  K  S  K  K  E  K  K  S  K  N  E  I  G  N  Q  V  S  P  L  P  E  L  I  A  E  P  T  G  A  R  S  M  S  F  V  G  T  H  E  Y  L  A  P  E  I  I  K  G  E  G  H  G  S  A  V  D  W  W  T  F  G  I  F  L  Y  E  L  L  F  G  K  T  P  F  K  G  S  G  N  R  Q  T  L  F  N  V  V  G  Q  P  L  R  F  P  E  S  P  V  V  S  F  S  A  R  D  L  I  R  G  L  L  V  K  E  P  Q  H  R  L  A  Y  K  R  G  A  T  E  I  K  Q  H  P  F  F  E  G  V  N  W  A  L  I  R  C  A  S  P  P  E  I  P  R  P  V  E  F  E  R  I  S  V  P  P  A  A  S  T  S  E  K  G  V  A  G  T  V  P  Y  Q  K  N  S  D  N  Y  L  E  F  D  F  F  *  S  I  F  Y  I  S  F  F  P  S  R  R  Y  W  L  F  I  F  T  N  *  N  I  G  R  L  Y  N  I  W  K  M  L  C  E  G  L  I  S  L  M  I  I  L  L  F  *  V  V  I  Q  Q  L  K  I  C  C  M  P  K  H  Y  K  F  D  A  T  N  R  *  C  E  F  V  S  L  F  :  T  K  H  *  K  K </first_frame>
            <second_frame>  F  L  S  S  S  M  W  C  L  S  A  L  *  C  L  H  F  N  V  L  L  C  F  R  F  L  F  P  G  G  K  K  G  I  W  L  F  L  R :   N  F  L  C  C  *  W  S  S  L  C  W  C  V  F  L  I  R  R  G  L  M  A  *  A  W  S  P  S  D  G  F  G  K  H  S  V  L  R  Y  Q  Y  S  F  L  W  P  R  H  L  L  P  R  V  *  P  K  S  *  T  R  Q  L  E  I  R  Q  Q  N  G  V  L  A  G  L  H  L  P  K  F  Q  K  I  T  N  *  R  P  R  F  L  K  N  E  K  L  Y  R  N  S  L  W  *  N  Q  L  S  P  K  S  R  R  A  V  N  L  R  D  L  P  T  H  L  L  I  N  S  I  Q  T  Y  I  W  A  I  L  R  I  Q  L  V  E  *  V  L  C  L  Q  R  Q  K  A  H  K  G  Q  L  I  R  K  E  R  I  L  L  R  T  A  Q  H  Q  P  K  L  V  M  G  L  A  V  L  Q  K  Q  V  E  V  P  K  L  V  I  E  Q  I  F  L  R  V  V  R  A  A  S  V  G  G  A  Q  E  L  T  *  V  R  R  V  L  L  A  A  *  A  A  A  L  T  N  P  T  K  L  M  T  Q  D  G  K  P  F  K  L  S  G  L  K  M  G  H  W  I  *  G  T  S  G  C  *  R  S  W  E  V  V  I  L  E  V  C  I  C  L  S  C  V  E  Q  S  V  I  L  P  *  K  L  W  I  R  R  R  *  L  V  V  R  N  C  F  V  H  R  Q  K  E  R  F  C  S  P  W  T  I  H  F  S  Q  H  Y  I  A  I  L  K  Q  K  S  S  H  V  *  *  W  S  S  A  Q  E  E  T  C  T  H  S  D  K  D  N  Q  G  S  I  F  Q  N  K  R  *   : N  S  T  *  Q  K  C  S  F  P  W  N  T  F  T  C  L  A  L  S  I  V  I  S  S  Q  K  M  C  L  S  E  K  M  D  I  *  C  S  L  I  L  T  S  P  F  A  V  L  S  V  Q  H  *  S  S  H  H  L  L  K  V  S  H  C  A  R  I  Q  L  I  V  C  S  Q  H  A  S  S  P  L  V  F  S  H  P  V  L  L  L  L  H  V  S  G  L  A  S  F  P  A  S  Q  R  K  K  R  N  L  K  M  K  *  V  T  K  L  A  H  Y  Q  S  L  L  L  S  L  L  E  H  G  Q  C  H  L  S  G  L  T  S  T  *  H  P  R  *  S  K  V  K  D  T  A  V  Q  *  T  G  G  P  L  V  S  F  Y  M  S  Y  C  L  A  K  H  P  S  R  D  Q  E  I  D  K  L  F  S  T  L  L  V  S  P  C  G  F  Q  N  L  Q  W  S  V  S  Q  L  E  I  L  S  E  A  C  S  *  R  S  L  S  I  D  W  H  T  K  E  E  P  Q  K  S  S  N  I  L  S  L  K  V  *  I  G  L  *  Y  A  A  R  A  L  L  R  S  Q  G  L  W  N  S  R  E  F  Q  F  H  Q  Q  H  Q  P  V  R  K  V  *  L  E  L  F  L  T  R  R  I  Q  T  T  I  L  S  L  I  S  S  N  L  F  F  I  Y  L  F  F  R  R  G  D  I  G  C  S  S  S  Q  I  E  T  *  E  G  C  T  T  F  G  R  C  Y  V  K  V  *  L  V  *  *  S  Y  Y  C  F  E  L  *  F  N  S  *  K  F  V  A  C  Q  N  T  T  S  L  M  L  P  I  D  N  V  N  L  L  V  Y  L :   Q  N  I  K  K   </second_frame>
            <third_frame>   S  Y  L  L  L  C  G  V  *  V  L  F  N  V  Y  I  L  M  F  C  F  V  L  G  S  C  F  L  E  E  K  K  G  F  G  C  F  *   : G  T  F  Y  V  V  D  G  A  A  Y  V  G  V  F  F  *  *  E  G  D  *  W  L  K  L  G  V  R  V  M  G  L  V  S  T  V  Y  *  G  I  N  I  H  F  Y  G  L  D  T  F  F  Q  E  F  S  R  K  A  E  Q  D  N  W  K  S  D  N  R  T  E  F  S  Q  V  Y  T  F  P  S  S  K  K  *  Q  I  R  D  H  D  F  *  R  T  R  S  C  I  E  T  A  C  G  R  I  N  C  H  P  K  V  A  E  Q  S  T  *  G  I  F  Q  L  T  C  *  *  I  R  F  K  L  I  F  G  Q  F  *  E  F  S  *  W  S  R  F  Y  A  Y  R  D  K  R  L  T  R  D  S  *  S  G  K  K  E  F  Y  *  G  Q  L  S  I  S  Q  S  *  *  W  G  *  Q  Y  C  K  N  K  W  K  C  Q  N  *  *  S  S  R  F  S  *  E  W  *  E  Q  H  L  *  G  E  H  R  N  *  R  K  *  G  E  Y  F  *  Q  L  E  Q  Q  R  *  Q  T  P  Q  S  *  *  L  K  M  G  S  H  S  S  Y  P  D  *  R  W  G  I  G  F  E  A  L  P  V  A  E  E  V  G  K  W  *  Y  W  K  C  V  S  V  *  V  V  W  N  K  V  L  F  C  H  E  S  Y  G  *  G  V  V  S  *  S  *  E  I  A  S  C  T  D  R  K  R  D  F  A  V  P  G  P  S  I  S  P  N  I  I  *  P  F  *  N  R  K  V  L  M  S  S  D  G  V  L  P  R  R  R  P  A  H  T  Q  T  K  T  T  R  E  A  F  F  R  T  S  G  E  :  I  L  R  S  R  S  A  P  F  P  G  I  P  S  H  A  W  H  C  L  S  *  S  Q  A  R  K  C  A  C  Q  R  R  W  T  Y  N  A  L  *  F  *  P  L  P  S  L  C  C  Q  S  N  T  S  Q  V  I  I  S  *  R  *  A  T  A  Q  E  F  S  L  L  C  A  A  S  M  H  R  A  L  L  Y  S  A  I  L  C  C  Y  Y  Y  M  F  R  A  S  P  L  F  Q  Q  V  K  E  R  K  E  I  *  K  *  N  R  *  P  S  *  P  I  T  R  A  Y  C  *  A  Y  W  S  T  V  N  V  I  C  R  D  S  R  V  L  S  T  R  D  N  Q  R  *  R  T  R  Q  C  S  R  L  V  D  L  W  Y  L  S  I  *  V  T  V  W  Q  N  T  L  Q  G  I  R  K  S  T  N  S  F  Q  R  C  W  S  A  L  A  V  S  R  I  S  S  G  Q  F  L  S  *  R  S  Y  P  R  L  A  R  E  G  A  S  A  *  T  G  I  Q  K  R  S  H  R  N  Q  A  T  S  F  L  *  R  C  K  L  G  F  D  T  L  R  E  P  S  *  D  P  K  A  C  G  I  R  E  N  F  S  S  T  S  S  I  N  Q  *  E  R  C  S  W  N  C  S  L  P  E  E  F  R  Q  L  S  *  V  *  F  L  L  I  Y  F  L  Y  I  F  F  S  V  E  A  I  L  A  V  H  L  H  K  L  K  H  R  K  A  V  Q  H  L  E  D  V  M  *  R  F  D  *  F  D  D  H  I  I  V  L  S  C  N  S  T  V  E  N  L  L  H  A  K  T  L  Q  V  *  C  Y  Q  S  I  M  *  I  C  *  F  I   : Y  K  T  L  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86034" stop="85064"/>
                    <exon start="83009" stop="82133"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1845</number_coding_nucleotides>
                  <number_encoded_amino_acids>615</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQCIEVSIFISMASTPSSKSLAEKLNKTTGNQTTERSSRRSTPSQVPKNNKLETTISKEREVVSKQLVVESTVTQKSQSSQPKGSSNSLADKFDSNLYLGNSKNSASGVGSMPTETKGSQGTADQERKNSTKDSSASAKVSDGASSIAKTSGSAKISDRADFLESGKSSICRGSTGTDVSEESTSSSLSSSVNKPHKANDSRWEAIQAIRTKDGALDLRHFRLLKKLGSGDIGSVYLSELCGTKCYFAMKVMDKASLASRKKLLRAQTEREILQSLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFSEQAVKFYVAEVLLSLEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSSLEGEPLRKNSAYCVQPACIEPSCIQPSCAVTTTCFGPRLFSSKSKKEKKSKNEIGNQVSPLPELIAEPTGARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRQTLFNVVGQPLRFPESPVVSFSARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEIPRPVEFERISVPPAASTSEKGVAGTVPYQKNSDNYLEFDFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="91834" PGL_stop="87996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91834" e_stop="91591"/>
            <exon e_start="90066" e_stop="89947"/>
            <exon e_start="89197" e_stop="88739"/>
            <exon e_start="88023" e_stop="87996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.879" e_score="0.996"/>
          <exon-only e_score="0.607"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91834" e_stop="91591" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91590" i_stop="90067" i_length="1524"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90066" e_stop="89947" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.869" acc_prob="0.951">
            <gDNA_intron_boundary i_start="89946" i_stop="89198" i_length="749"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="89197" e_stop="88739" e_length="459"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.879">
            <gDNA_intron_boundary i_start="88738" i_stop="88024" i_length="715"/>
          </intron>
          <exon e_serial="4" e_score="0.607">
            <gDNA_exon_boundary e_start="88023" e_stop="87996" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91834" stop="91591"/>
              <exon start="90066" stop="89947"/>
              <exon start="89197" stop="88739"/>
              <exon start="88023" stop="87996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGCAGAAATGGGATCTTCTGAAGGTCGAAGAGCAACTTTAATGGTGTACAGAAATTTACTGAAAGCAGTGAAAAAACATATAGGGAAGGAAGAACACAAATCTCATTTTACTGATTTCAGCAGGGAAGAATTCAAGAAGAACATAAATCTGGAATACTCAAAAGACTCTTCTTTTATTCAGCAAAGAATTAATCTTGCTCAAAATTATACTTATCTTCTCAATAGTATCCATCATCATAAG : GACTTGCTATTTTCTTACAACATTGCAGTGGATAGATCAAATGAGATGACAAAAGTGCTGGGCAAATCTGCTGCAAGTGTGGGTCTACGCCTTCCTGATGTTTATCAGCATTAAAAGTTG : CATATGCATCACCGAGTCATATATACACATTTGCTCAATGTACGCGTTGTTTGCATTACTGGTATCATTTCGAAGGTGGTTTTAGATGATTCAACAAAACTGGAAGCTGATATCACAGATATCTCCTAGACCAACTTTCATTCATATCTCCTTAGGATAACAATTTCGCGGATCTGTCCTATGTTGGACAGAATGTTTTTGGTTCGATGAACACCAAACCAGGAAAGTCAATCAGAAAAATGAAGAATTCTCCGCGTTTGTGAAGACTGCCTCAGAAATTGCCAAGCTAGAGATAGTTGTGCCTGATAAGTTTCATTTCATGTGAGAACTCATTAGTCCATTTGAGCCTGTTGTTTCTGTTTGTTACTGTTGTCTCTTTTTTCACTATTCGTTCATTCTACTGACGATCTTTCATAAACAACTTCTCTACCTACTTTATCATTCCTGGACTTACACTGA : GAAAAAAAGGAAAAATTTGACATTATTC</gDNA_template>
            <first_frame> F  C  R  N  G  I  F  *  R  S  K  S  N  F  N  G  V  Q  K  F  T  E  S  S  E  K  T  Y  R  E  G  R  T  Q  I  S  F  Y  *  F  Q  Q  G  R  I  Q  E  E  H  K  S  G  I  L  K  R  L  F  F  Y  S  A  K  N  *  S  C  S  K  L  Y  L  S  S  Q  *  Y  P  S  S  *   : G  L  A  I  F  L  Q  H  C  S  G  *  I  K  *  D  D  K  S  A  G  Q  I  C  C  K  C  G  S  T  P  S  *  C  L  S  A  L  K  V   : A  Y  A  S  P  S  H  I  Y  T  F  A  Q  C  T  R  C  L  H  Y  W  Y  H  F  E  G  G  F  R  *  F  N  K  T  G  S  *  Y  H  R  Y  L  L  D  Q  L  S  F  I  S  P  *  D  N  N  F  A  D  L  S  Y  V  G  Q  N  V  F  G  S  M  N  T  K  P  G  K  S  I  R  K  M  K  N  S  P  R  L  *  R  L  P  Q  K  L  P  S  *  R  *  L  C  L  I  S  F  I  S  C  E  N  S  L  V  H  L  S  L  L  F  L  F  V  T  V  V  S  F  F  T  I  R  S  F  Y  *  R  S  F  I  N  N  F  S  T  Y  F  I  I  P  G  L  T  L   : R  K  K  G  K  I  *  H  Y   </first_frame>
            <second_frame>  F  A  E  M  G  S  S  E  G  R  R  A  T  L  M  V  Y  R  N  L  L  K  A  V  K  K  H  I  G  K  E  E  H  K  S  H  F  T  D  F  S  R  E  E  F  K  K  N  I  N  L  E  Y  S  K  D  S  S  F  I  Q  Q  R  I  N  L  A  Q  N  Y  T  Y  L  L  N  S  I  H  H  H  K  :  D  L  L  F  S  Y  N  I  A  V  D  R  S  N  E  M  T  K  V  L  G  K  S  A  A  S  V  G  L  R  L  P  D  V  Y  Q  H  *  K  L  :  H  M  H  H  R  V  I  Y  T  H  L  L  N  V  R  V  V  C  I  T  G  I  I  S  K  V  V  L  D  D  S  T  K  L  E  A  D  I  T  D  I  S  *  T  N  F  H  S  Y  L  L  R  I  T  I  S  R  I  C  P  M  L  D  R  M  F  L  V  R  *  T  P  N  Q  E  S  Q  S  E  K  *  R  I  L  R  V  C  E  D  C  L  R  N  C  Q  A  R  D  S  C  A  *  *  V  S  F  H  V  R  T  H  *  S  I  *  A  C  C  F  C  L  L  L  L  S  L  F  S  L  F  V  H  S  T  D  D  L  S  *  T  T  S  L  P  T  L  S  F  L  D  L  H  *  :  E  K  K  E  K  F  D  I  I  </second_frame>
            <third_frame>   L  Q  K  W  D  L  L  K  V  E  E  Q  L  *  W  C  T  E  I  Y  *  K  Q  *  K  N  I  *  G  R  K  N  T  N  L  I  L  L  I  S  A  G  K  N  S  R  R  T  *  I  W  N  T  Q  K  T  L  L  L  F  S  K  E  L  I  L  L  K  I  I  L  I  F  S  I  V  S  I  I  I  R :   T  C  Y  F  L  T  T  L  Q  W  I  D  Q  M  R  *  Q  K  C  W  A  N  L  L  Q  V  W  V  Y  A  F  L  M  F  I  S  I  K  S  C :   I  C  I  T  E  S  Y  I  H  I  C  S  M  Y  A  L  F  A  L  L  V  S  F  R  R  W  F  *  M  I  Q  Q  N  W  K  L  I  S  Q  I  S  P  R  P  T  F  I  H  I  S  L  G  *  Q  F  R  G  S  V  L  C  W  T  E  C  F  W  F  D  E  H  Q  T  R  K  V  N  Q  K  N  E  E  F  S  A  F  V  K  T  A  S  E  I  A  K  L  E  I  V  V  P  D  K  F  H  F  M  *  E  L  I  S  P  F  E  P  V  V  S  V  C  Y  C  C  L  F  F  H  Y  S  F  I  L  L  T  I  F  H  K  Q  L  L  Y  L  L  Y  H  S  W  T  Y  T  E :   K  K  R  K  N  L  T  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91833" stop="91591"/>
                    <exon start="90066" stop="89953"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAEMGSSEGRRATLMVYRNLLKAVKKHIGKEEHKSHFTDFSREEFKKNINLEYSKDSSFIQQRINLAQNYTYLLNSIHHHKDLLFSYNIAVDRSNEMTKVLGKSAASVGLRLPDVYQH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="92470" PGL_stop="93187"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92470" e_stop="93187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="92470" e_stop="93187" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92470" stop="93187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTCATTTGAATCAAGAAACAATATATTGTGCAAGAGATGTTACCAATAGTCTTTACAAGAACAAAATCCATCTTTAAAACAATGAAACCTATTCCTATCGCGCACAACTATCTCTCTCTTGACAATTTCTGAAATTACTTTGAAAGCCTCATGACAATCTTCACAAACACGAAGATTCTTCATTATTCTGATCGTTTCTCCTGGCTTTATGTTCATCAAACCGTAAACAAGAGCCAATTTTTCACTATGTCGATACACATATTTTTCTTTCTCATTTTCTTCTATGTCAAGCAGAACCACTGAAGTATTTGGTACATACCCTTTGGACTTCATTTGTTCCAACAGTTCATCCCATCTCTTAAAGATCTGCTCAGCCTGAGGATGGTTATCATCTCCAGCCACAAATTCGTGCGTTGTTCCTGCTATAGTAATTGAACTCCAACCTGGAGTTTTCTTTACTCCGCGATCCTTCATCAACTTCCTCACCATTGCTGCATCTTCCCAACGCTTAGCTTCTGCATAGATGTTAGACATGATAATGTAGTATCCATCGTTAAGAGGGTCTAGGACACCTAGTTGCCTGATAGCTTCCTCAGCCATTTTTACGTCCTTTTGAGTTCTACATCCACCAAGAAAAGAACCCCATACAACAGCATTTGGTTTTATAGGCATGCTTGTGATGAGCTCATACGCGTCTTCAAGAAGTCCTGCTCGA</gDNA_template>
            <first_frame> C  F  I  *  I  K  K  Q  Y  I  V  Q  E  M  L  P  I  V  F  T  R  T  K  S  I  F  K  T  M  K  P  I  P  I  A  H  N  Y  L  S  L  D  N  F  *  N  Y  F  E  S  L  M  T  I  F  T  N  T  K  I  L  H  Y  S  D  R  F  S  W  L  Y  V  H  Q  T  V  N  K  S  Q  F  F  T  M  S  I  H  I  F  F  F  L  I  F  F  Y  V  K  Q  N  H  *  S  I  W  Y  I  P  F  G  L  H  L  F  Q  Q  F  I  P  S  L  K  D  L  L  S  L  R  M  V  I  I  S  S  H  K  F  V  R  C  S  C  Y  S  N  *  T  P  T  W  S  F  L  Y  S  A  I  L  H  Q  L  P  H  H  C  C  I  F  P  T  L  S  F  C  I  D  V  R  H  D  N  V  V  S  I  V  K  R  V  *  D  T  *  L  P  D  S  F  L  S  H  F  Y  V  L  L  S  S  T  S  T  K  K  R  T  P  Y  N  S  I  W  F  Y  R  H  A  C  D  E  L  I  R  V  F  K  K  S  C  S  </first_frame>
            <second_frame>  A  S  F  E  S  R  N  N  I  L  C  K  R  C  Y  Q  *  S  L  Q  E  Q  N  P  S  L  K  Q  *  N  L  F  L  S  R  T  T  I  S  L  L  T  I  S  E  I  T  L  K  A  S  *  Q  S  S  Q  T  R  R  F  F  I  I  L  I  V  S  P  G  F  M  F  I  K  P  *  T  R  A  N  F  S  L  C  R  Y  T  Y  F  S  F  S  F  S  S  M  S  S  R  T  T  E  V  F  G  T  Y  P  L  D  F  I  C  S  N  S  S  S  H  L  L  K  I  C  S  A  *  G  W  L  S  S  P  A  T  N  S  C  V  V  P  A  I  V  I  E  L  Q  P  G  V  F  F  T  P  R  S  F  I  N  F  L  T  I  A  A  S  S  Q  R  L  A  S  A  *  M  L  D  M  I  M  *  Y  P  S  L  R  G  S  R  T  P  S  C  L  I  A  S  S  A  I  F  T  S  F  *  V  L  H  P  P  R  K  E  P  H  T  T  A  F  G  F  I  G  M  L  V  M  S  S  Y  A  S  S  R  S  P  A  R </second_frame>
            <third_frame>   L  H  L  N  Q  E  T  I  Y  C  A  R  D  V  T  N  S  L  Y  K  N  K  I  H  L  *  N  N  E  T  Y  S  Y  R  A  Q  L  S  L  S  *  Q  F  L  K  L  L  *  K  P  H  D  N  L  H  K  H  E  D  S  S  L  F  *  S  F  L  L  A  L  C  S  S  N  R  K  Q  E  P  I  F  H  Y  V  D  T  H  I  F  L  S  H  F  L  L  C  Q  A  E  P  L  K  Y  L  V  H  T  L  W  T  S  F  V  P  T  V  H  P  I  S  *  R  S  A  Q  P  E  D  G  Y  H  L  Q  P  Q  I  R  A  L  F  L  L  *  *  L  N  S  N  L  E  F  S  L  L  R  D  P  S  S  T  S  S  P  L  L  H  L  P  N  A  *  L  L  H  R  C  *  T  *  *  C  S  I  H  R  *  E  G  L  G  H  L  V  A  *  *  L  P  Q  P  F  L  R  P  F  E  F  Y  I  H  Q  E  K  N  P  I  Q  Q  H  L  V  L  *  A  C  L  *  *  A  H  T  R  L  Q  E  V  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0309B15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="97630" PGL_stop="93083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97630" e_stop="97505"/>
            <exon e_start="95925" e_stop="95612"/>
            <exon e_start="95056" e_stop="94816"/>
            <exon e_start="94465" e_stop="94448"/>
            <exon e_start="93091" e_stop="93083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.541" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-intron don_prob="0.884" acc_prob="0.746" e_score="0.667"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="97630" e_stop="97505" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.541">
            <gDNA_intron_boundary i_start="97504" i_stop="95926" i_length="1579"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95925" e_stop="95612" e_length="314"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.962">
            <gDNA_intron_boundary i_start="95611" i_stop="95057" i_length="555"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="95056" e_stop="94816" e_length="241"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94815" i_stop="94466" i_length="350"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="94465" e_stop="94448" e_length="18"/>
          </exon>
          <intron i_serial="4" don_prob="0.884" acc_prob="0.746">
            <gDNA_intron_boundary i_start="94447" i_stop="93092" i_length="1356"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="93091" e_stop="93083" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97630" stop="97505"/>
              <exon start="95925" stop="95612"/>
              <exon start="95056" stop="94816"/>
              <exon start="94465" stop="94448"/>
              <exon start="93091" stop="93083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATATTGCAGTATCGGGTCAAAATTGGGCGCTATTTCTCGGGTCTACTGTAATCGTCGCCGGTCAGCTTCCGTCGGTGTTCCGGTCACCTTGTTAGGTGAATTTGAGCTTTCTTTCTCATCAAG : ACATCTATTCCAATTCAAAGACTGGGAATTCTAGTGTATGGCTTCTAGGCGGAATATTAATTACAGTCGTCTCGCTGTGGATGATGATGACGACTATTATGGATATTCTGGCAAGCGAGCTGACCCTAGATTTGATTATTCACCAAAATCGTTAGATAGAATCCCCTGGAAGTCCATTGCCCTTGCTCTTTTTCTGCTCTTTCTGGGATGTTTGCTTCTCTTACTATCCTACTTCATCTTATCTGGTCATATGGAAGGAGAGAGTTCCCAGGCATATGGTCTCCTTGGACTCGGAATCCTCACTTTTCTCCCTG : GTTTCTATGAGACGCGTATTGCATATTACTCTTGGAGAGGTGCTCAAGGTTATCGATTTACTGCAATCCCTGACTATTGAGGTTTTCACATTTCATGTAAACGCTAAATGTAGTTACTAGCTTCTGTAATGAGCTTTATGATAGTTTTTATTGTAACACACATTGCCCTATACATTTCGAATAACATCTGAATGTAGTTACTGGTTTTCATAATGAGTTCGAGTTTGATGAGTTTGCAGCA : CCAAACAACAACAAAAAG : AACTCAAAA</gDNA_template>
            <first_frame> E  I  L  Q  Y  R  V  K  I  G  R  Y  F  S  G  L  L  *  S  S  P  V  S  F  R  R  C  S  G  H  L  V  R  *  I  *  A  F  F  L  I  K  :  T  S  I  P  I  Q  R  L  G  I  L  V  Y  G  F  *  A  E  Y  *  L  Q  S  S  R  C  G  *  *  *  R  L  L  W  I  F  W  Q  A  S  *  P  *  I  *  L  F  T  K  I  V  R  *  N  P  L  E  V  H  C  P  C  S  F  S  A  L  S  G  M  F  A  S  L  T  I  L  L  H  L  I  W  S  Y  G  R  R  E  F  P  G  I  W  S  P  W  T  R  N  P  H  F  S  P  W :   F  L  *  D  A  Y  C  I  L  L  L  E  R  C  S  R  L  S  I  Y  C  N  P  *  L  L  R  F  S  H  F  M  *  T  L  N  V  V  T  S  F  C  N  E  L  Y  D  S  F  Y  C  N  T  H  C  P  I  H  F  E  *  H  L  N  V  V  T  G  F  H  N  E  F  E  F  D  E  F  A  A  :  P  N  N  N  K  K  :  N  S  K </first_frame>
            <second_frame>  R  Y  C  S  I  G  S  K  L  G  A  I  S  R  V  Y  C  N  R  R  R  S  A  S  V  G  V  P  V  T  L  L  G  E  F  E  L  S  F  S  S  R :   H  L  F  Q  F  K  D  W  E  F  *  C  M  A  S  R  R  N  I  N  Y  S  R  L  A  V  D  D  D  D  D  Y  Y  G  Y  S  G  K  R  A  D  P  R  F  D  Y  S  P  K  S  L  D  R  I  P  W  K  S  I  A  L  A  L  F  L  L  F  L  G  C  L  L  L  L  L  S  Y  F  I  L  S  G  H  M  E  G  E  S  S  Q  A  Y  G  L  L  G  L  G  I  L  T  F  L  P   : G  F  Y  E  T  R  I  A  Y  Y  S  W  R  G  A  Q  G  Y  R  F  T  A  I  P  D  Y  *  G  F  H  I  S  C  K  R  *  M  *  L  L  A  S  V  M  S  F  M  I  V  F  I  V  T  H  I  A  L  Y  I  S  N  N  I  *  M  *  L  L  V  F  I  M  S  S  S  L  M  S  L  Q  H :   Q  T  T  T  K  R :   T  Q   </second_frame>
            <third_frame>   D  I  A  V  S  G  Q  N  W  A  L  F  L  G  S  T  V  I  V  A  G  Q  L  P  S  V  F  R  S  P  C  *  V  N  L  S  F  L  S  H  Q   : D  I  Y  S  N  S  K  T  G  N  S  S  V  W  L  L  G  G  I  L  I  T  V  V  S  L  W  M  M  M  T  T  I  M  D  I  L  A  S  E  L  T  L  D  L  I  I  H  Q  N  R  *  I  E  S  P  G  S  P  L  P  L  L  F  F  C  S  F  W  D  V  C  F  S  Y  Y  P  T  S  S  Y  L  V  I  W  K  E  R  V  P  R  H  M  V  S  L  D  S  E  S  S  L  F  S  L  :  V  S  M  R  R  V  L  H  I  T  L  G  E  V  L  K  V  I  D  L  L  Q  S  L  T  I  E  V  F  T  F  H  V  N  A  K  C  S  Y  *  L  L  *  *  A  L  *  *  F  L  L  *  H  T  L  P  Y  T  F  R  I  T  S  E  C  S  Y  W  F  S  *  *  V  R  V  *  *  V  C  S   : T  K  Q  Q  Q  K   : E  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95891" stop="95612"/>
                    <exon start="95056" stop="94977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CMASRRNINYSRLAVDDDDDYYGYSGKRADPRFDYSPKSLDRIPWKSIALALFLLFLGCLLLLLSYFILSGHMEGESSQAYGLLGLGILTFLPGFYETRIAYYSWRGAQGYRFTAIPDY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95770" stop="95612"/>
                    <exon start="95056" stop="94937"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IESPGSPLPLLFFCSFWDVCFSYYPTSSYLVIWKERVPRHMVSLDSESSLFSLVSMRRVLHITLGEVLKVIDLLQSLTIEVFTFHVNAKCSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94307" e_stop="93135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="94307" e_stop="93135" e_length="1173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94307" stop="93135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACCCTTCACCATTTCACTTCTCCATTCGAGCTCAAACAAGCTGTTGCCTTTCTCATCAAAACCAATAAACCTCTTTCACTACTCCCACTTTCTCGGGTAGCTTCCATTTGCGCACTTACTCCCGATTTCCCCTTTGCTCAACAGATTTTCAGCTCTGTTGATCAGCAAGAAGTTGCTATATGGAATAGCTGTTTGAGAAATCTTGCTGAAGGTAGTTCCTTAATTGATGCAATTTTCTTGTTTCAGCAAATGCGTAGTTACAATGTGAGTCTTGACTGTTTCACTTGCTCGTTTGTTCTTAAGGCTTGTGTGGGGTTACGGGATCTTTTACGTGGGAGAATTGTTCATGGGTATATAGAGAAACTTGGGTTTCAATCGAATTTAGTTTTGCTAAATGCACTTCTTCATTTATATGCTACTTGTGGAGCAACGGATGATGCCATCCTTCTGTTCGATAAAATGCCTCAACGAGATGTTGTGTCTTGGAATATAATGATTACCCAATTATCAAAGAAGGGTGATGTTGATGGGGCGTTTGACTTGTTTGGGAAAATGCCTGAGAGAAATTTAAGGTCTTGGACAGCCATGATTACTGGTTTTGTTCATTGCGTGAAGGCTAAAGAGGCTATTAGACTTTTCGTAGAAATGGAAGAAACGGGGTTGAGGGCGAATGAGGTAACTGTAGTGGCTGTTCTTGCAGCTTGTGCTGATTTGGGTGCACTTGACTTGGGTAGGAGGATTCATGAGTATTCAAATAAGAGCGGGTTCAGGAGAAACGTTCACATTTGTAACACTCTGATTGACATGTACATTAAGTGTGGCTGCTTAGAGGCTGCAAAAGCTGTTTTCGATGAAATGAAGGAACCAACAATTGTATCATGGTCAGCCATGATCCAGGGTTTAGCTATCCATGGACACGGGGATGAAGCCTTAGAACTCTTTAACGAGATGATCAAAATGGGAATGAAGCCTAACGAGGTCACGTTTCTTGGAATCTTGCATGCTTGTAGCCATATGGGGTTGATCAATAAGGGGCGAGAATTCTTTACTAGCATGAGTAGAGACTACAACATTTCTCCTCAAATCGAGCATTATGGTTGTATGGTTGATCTCTTGAGTCGAGCAGGACTTCTTGAAGACGCGTATGAGCTCATCACAAGCATGCCTATAA</gDNA_template>
            <first_frame> L  P  F  T  I  S  L  L  H  S  S  S  N  K  L  L  P  F  S  S  K  P  I  N  L  F  H  Y  S  H  F  L  G  *  L  P  F  A  H  L  L  P  I  S  P  L  L  N  R  F  S  A  L  L  I  S  K  K  L  L  Y  G  I  A  V  *  E  I  L  L  K  V  V  P  *  L  M  Q  F  S  C  F  S  K  C  V  V  T  M  *  V  L  T  V  S  L  A  R  L  F  L  R  L  V  W  G  Y  G  I  F  Y  V  G  E  L  F  M  G  I  *  R  N  L  G  F  N  R  I  *  F  C  *  M  H  F  F  I  Y  M  L  L  V  E  Q  R  M  M  P  S  F  C  S  I  K  C  L  N  E  M  L  C  L  G  I  *  *  L  P  N  Y  Q  R  R  V  M  L  M  G  R  L  T  C  L  G  K  C  L  R  E  I  *  G  L  G  Q  P  *  L  L  V  L  F  I  A  *  R  L  K  R  L  L  D  F  S  *  K  W  K  K  R  G  *  G  R  M  R  *  L  *  W  L  F  L  Q  L  V  L  I  W  V  H  L  T  W  V  G  G  F  M  S  I  Q  I  R  A  G  S  G  E  T  F  T  F  V  T  L  *  L  T  C  T  L  S  V  A  A  *  R  L  Q  K  L  F  S  M  K  *  R  N  Q  Q  L  Y  H  G  Q  P  *  S  R  V  *  L  S  M  D  T  G  M  K  P  *  N  S  L  T  R  *  S  K  W  E  *  S  L  T  R  S  R  F  L  E  S  C  M  L  V  A  I  W  G  *  S  I  R  G  E  N  S  L  L  A  *  V  E  T  T  T  F  L  L  K  S  S  I  M  V  V  W  L  I  S  *  V  E  Q  D  F  L  K  T  R  M  S  S  S  Q  A  C  L  * </first_frame>
            <second_frame>  Y  P  S  P  F  H  F  S  I  R  A  Q  T  S  C  C  L  S  H  Q  N  Q  *  T  S  F  T  T  P  T  F  S  G  S  F  H  L  R  T  Y  S  R  F  P  L  C  S  T  D  F  Q  L  C  *  S  A  R  S  C  Y  M  E  *  L  F  E  K  S  C  *  R  *  F  L  N  *  C  N  F  L  V  S  A  N  A  *  L  Q  C  E  S  *  L  F  H  L  L  V  C  S  *  G  L  C  G  V  T  G  S  F  T  W  E  N  C  S  W  V  Y  R  E  T  W  V  S  I  E  F  S  F  A  K  C  T  S  S  F  I  C  Y  L  W  S  N  G  *  C  H  P  S  V  R  *  N  A  S  T  R  C  C  V  L  E  Y  N  D  Y  P  I  I  K  E  G  *  C  *  W  G  V  *  L  V  W  E  N  A  *  E  K  F  K  V  L  D  S  H  D  Y  W  F  C  S  L  R  E  G  *  R  G  Y  *  T  F  R  R  N  G  R  N  G  V  E  G  E  *  G  N  C  S  G  C  S  C  S  L  C  *  F  G  C  T  *  L  G  *  E  D  S  *  V  F  K  *  E  R  V  Q  E  K  R  S  H  L  *  H  S  D  *  H  V  H  *  V  W  L  L  R  G  C  K  S  C  F  R  *  N  E  G  T  N  N  C  I  M  V  S  H  D  P  G  F  S  Y  P  W  T  R  G  *  S  L  R  T  L  *  R  D  D  Q  N  G  N  E  A  *  R  G  H  V  S  W  N  L  A  C  L  *  P  Y  G  V  D  Q  *  G  A  R  I  L  Y  *  H  E  *  R  L  Q  H  F  S  S  N  R  A  L  W  L  Y  G  *  S  L  E  S  S  R  T  S  *  R  R  V  *  A  H  H  K  H  A  Y   </second_frame>
            <third_frame>   T  L  H  H  F  T  S  P  F  E  L  K  Q  A  V  A  F  L  I  K  T  N  K  P  L  S  L  L  P  L  S  R  V  A  S  I  C  A  L  T  P  D  F  P  F  A  Q  Q  I  F  S  S  V  D  Q  Q  E  V  A  I  W  N  S  C  L  R  N  L  A  E  G  S  S  L  I  D  A  I  F  L  F  Q  Q  M  R  S  Y  N  V  S  L  D  C  F  T  C  S  F  V  L  K  A  C  V  G  L  R  D  L  L  R  G  R  I  V  H  G  Y  I  E  K  L  G  F  Q  S  N  L  V  L  L  N  A  L  L  H  L  Y  A  T  C  G  A  T  D  D  A  I  L  L  F  D  K  M  P  Q  R  D  V  V  S  W  N  I  M  I  T  Q  L  S  K  K  G  D  V  D  G  A  F  D  L  F  G  K  M  P  E  R  N  L  R  S  W  T  A  M  I  T  G  F  V  H  C  V  K  A  K  E  A  I  R  L  F  V  E  M  E  E  T  G  L  R  A  N  E  V  T  V  V  A  V  L  A  A  C  A  D  L  G  A  L  D  L  G  R  R  I  H  E  Y  S  N  K  S  G  F  R  R  N  V  H  I  C  N  T  L  I  D  M  Y  I  K  C  G  C  L  E  A  A  K  A  V  F  D  E  M  K  E  P  T  I  V  S  W  S  A  M  I  Q  G  L  A  I  H  G  H  G  D  E  A  L  E  L  F  N  E  M  I  K  M  G  M  K  P  N  E  V  T  F  L  G  I  L  H  A  C  S  H  M  G  L  I  N  K  G  R  E  F  F  T  S  M  S  R  D  Y  N  I  S  P  Q  I  E  H  Y  G  C  M  V  D  L  L  S  R  A  G  L  L  E  D  A  Y  E  L  I  T  S  M  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94305" stop="93136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLHHFTSPFELKQAVAFLIKTNKPLSLLPLSRVASICALTPDFPFAQQIFSSVDQQEVAIWNSCLRNLAEGSSLIDAIFLFQQMRSYNVSLDCFTCSFVLKACVGLRDLLRGRIVHGYIEKLGFQSNLVLLNALLHLYATCGATDDAILLFDKMPQRDVVSWNIMITQLSKKGDVDGAFDLFGKMPERNLRSWTAMITGFVHCVKAKEAIRLFVEMEETGLRANEVTVVAVLAACADLGALDLGRRIHEYSNKSGFRRNVHICNTLIDMYIKCGCLEAAKAVFDEMKEPTIVSWSAMIQGLAIHGHGDEALELFNEMIKMGMKPNEVTFLGILHACSHMGLINKGREFFTSMSRDYNISPQIEHYGCMVDLLSRAGLLEDAYELITSMPI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="108265" PGL_stop="107101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108265" e_stop="108211"/>
            <exon e_start="107983" e_stop="107760"/>
            <exon e_start="107657" e_stop="107511"/>
            <exon e_start="107272" e_stop="107101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.686" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.904" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108265" e_stop="108211" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.686">
            <gDNA_intron_boundary i_start="108210" i_stop="107984" i_length="227"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107983" e_stop="107760" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="107759" i_stop="107658" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107657" e_stop="107511" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.904">
            <gDNA_intron_boundary i_start="107510" i_stop="107273" i_length="238"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107272" e_stop="107101" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108265" stop="108211"/>
              <exon start="107983" stop="107760"/>
              <exon start="107657" stop="107511"/>
              <exon start="107272" stop="107101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAGTATGGACAAGGACAACAATCAACTTCACCATGTGAGCATTTGCCTCAG : ACGAACTGCAAGACGGAAACTTTACGAGATCAAAAGGAAATGCTTGTGGAGAATTCAGTCTCAAGCTCTGTTCAATTACAAGAACTGCAAGAAAAACTTGATTTATTGAAAGCAGCAGTTGAAATGGCTTCTGATCACAAACATCCCAGTGACTTTTATGTGAATCAGCTAAACGATCAGGTGGAAGTGAAAAGGGGCAAAATTGTTGAAATGGAAAGTCACTG : CATTGATAGAAGCAAGGCCCTTGAGCAAAAGAAGGTTTCTCTTGAGGAAAAGTTAAGAGCAACAAATCCAGAGACCTATGAAAAATATAAAAAGGTGGAAGAGATTGAGTTGAAGTTGGAGAATATATTAGCCGAAAACAAAAGAAG : AGAGGAAGAACTCATTGTACTCTCAGCCAAGGCTGAGAAGCAGCCCAAATTACAACCTAGAAGAACCTACATTCAGCGTGTTGAAGAGATCACCAAAAACAGCCGGAAGCAGGATGTGGACATAGAAAGAATATTAAAAGAAACAAGGGAGCTTCAGTTAGAGAGCAACTTT</gDNA_template>
            <first_frame> F  *  V  W  T  R  T  T  I  N  F  T  M  *  A  F  A  S   : D  E  L  Q  D  G  N  F  T  R  S  K  G  N  A  C  G  E  F  S  L  K  L  C  S  I  T  R  T  A  R  K  T  *  F  I  E  S  S  S  *  N  G  F  *  S  Q  T  S  Q  *  L  L  C  E  S  A  K  R  S  G  G  S  E  K  G  Q  N  C  *  N  G  K  S  L  :  H  *  *  K  Q  G  P  *  A  K  E  G  F  S  *  G  K  V  K  S  N  K  S  R  D  L  *  K  I  *  K  G  G  R  D  *  V  E  V  G  E  Y  I  S  R  K  Q  K  K  :  R  G  R  T  H  C  T  L  S  Q  G  *  E  A  A  Q  I  T  T  *  K  N  L  H  S  A  C  *  R  D  H  Q  K  Q  P  E  A  G  C  G  H  R  K  N  I  K  R  N  K  G  A  S  V  R  E  Q  L  </first_frame>
            <second_frame>  F  E  Y  G  Q  G  Q  Q  S  T  S  P  C  E  H  L  P  Q  :  T  N  C  K  T  E  T  L  R  D  Q  K  E  M  L  V  E  N  S  V  S  S  S  V  Q  L  Q  E  L  Q  E  K  L  D  L  L  K  A  A  V  E  M  A  S  D  H  K  H  P  S  D  F  Y  V  N  Q  L  N  D  Q  V  E  V  K  R  G  K  I  V  E  M  E  S  H  C :   I  D  R  S  K  A  L  E  Q  K  K  V  S  L  E  E  K  L  R  A  T  N  P  E  T  Y  E  K  Y  K  K  V  E  E  I  E  L  K  L  E  N  I  L  A  E  N  K  R  R :   E  E  E  L  I  V  L  S  A  K  A  E  K  Q  P  K  L  Q  P  R  R  T  Y  I  Q  R  V  E  E  I  T  K  N  S  R  K  Q  D  V  D  I  E  R  I  L  K  E  T  R  E  L  Q  L  E  S  N  F </second_frame>
            <third_frame>   L  S  M  D  K  D  N  N  Q  L  H  H  V  S  I  C  L  R :   R  T  A  R  R  K  L  Y  E  I  K  R  K  C  L  W  R  I  Q  S  Q  A  L  F  N  Y  K  N  C  K  K  N  L  I  Y  *  K  Q  Q  L  K  W  L  L  I  T  N  I  P  V  T  F  M  *  I  S  *  T  I  R  W  K  *  K  G  A  K  L  L  K  W  K  V  T   : A  L  I  E  A  R  P  L  S  K  R  R  F  L  L  R  K  S  *  E  Q  Q  I  Q  R  P  M  K  N  I  K  R  W  K  R  L  S  *  S  W  R  I  Y  *  P  K  T  K  E   : E  R  K  N  S  L  Y  S  Q  P  R  L  R  S  S  P  N  Y  N  L  E  E  P  T  F  S  V  L  K  R  S  P  K  T  A  G  S  R  M  W  T  *  K  E  Y  *  K  K  Q  G  S  F  S  *  R  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309B15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108264" stop="108211"/>
                    <exon start="107983" stop="107760"/>
                    <exon start="107657" stop="107511"/>
                    <exon start="107272" stop="107101"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEYGQGQQSTSPCEHLPQTNCKTETLRDQKEMLVENSVSSSVQLQELQEKLDLLKAAVEMASDHKHPSDFYVNQLNDQVEVKRGKIVEMESHCIDRSKALEQKKVSLEEKLRATNPETYEKYKKVEEIELKLENILAENKRREEELIVLSAKAEKQPKLQPRRTYIQRVEEITKNSRKQDVDIERILKETRELQLESNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 28 chains have been computed
$ 
$ memory statistics:
$ 505600 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 28088 bytes was the average size of a spliced alignment
$ 21568 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1659 bytes was the average size of a predicted gene location
$ 8 megabytes was the average size of the backtrace matrix
$ 30 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 02:52:40
-->
