<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:24:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U589255" ref_strand="+" ref_description="SGN-U589255 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caatcgttttcactaatcttcaaaagcaaaagtaaaacacgattacaccaaacgtaagaaagagttatgaatcttaccgttaagcaatagtcctctattgcttaacaagcctaagtagaaaacaatctacccactaagctatcccacctggacaacctagacttttaacacaacacaccaaatcctttatagattcaggaatggtttacagtttaagaacaagagaatatattcctaaacaactagacgaaaagctcaagatattgctgttgttcttggaataattctgcctttactttgtagagcctttgcaagagttcttgaaaagtttttatcaagttgcaaaaactgaagaaaagtgtttaggaaagtgccttttatatgggcaagtcactttcctaaacttctttgccattggttggaagggtcactttctgacgccatcgggaagtgtgcacctactttctgcaccatctccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3459" stop="4538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3759" g_stop="4247" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U589255" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3759" e_stop="4247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCGTTTTCACTAATCTTCAAATGCAAAAGCGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAGACCTCTATTGCTCAACAGGCCAGCCAAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACGCAACACACCAATTCCTTTATAGATTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACCAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTAGGAATGATTCTGCCTTTTCTTTGTGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTGGAACACAAATGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAAGGTCACACTTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTA-CGTCTCCAGC</genome_strand>
        <mrna_strand>CAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATGAATCTTACCGTTAAGCAATAGTCCTCTATTGCTTAACA----AGCCTAAGTAG-AAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAAATCCTTTATAGATTCAGGAATGGTTTACAGTTTAAGAACAAGAGAATATATTCCTAAACAACTAGACGAAAAGCTCAAGATATTGCTGTTGTTCTTGGAATAATTCTGCCTTTACTTTGTAGAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACT-GAAGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAGGGT--CAC-TTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGCACCATCTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571109" ref_strand="+" ref_description="SGN-U571109 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157358922|emb|CAO66818.1| (e_value=3e-73) unnamed; (*ATH) AT1G55790.1 (e_value=1e-61) | Symbol: None | expressed protein | chr1:20857458-20859735 REVERSE | Aliases: F20N2.17; (*SWP) sp|O94480|YC6D_SCHPO (e_value=9e-21) UPF0617 protein C1919.13c OS=Schizosaccharomyces pombe GN=SPCC1919.13c; ">
      <seq>gcactagctatggcggaagtagaagaaaacccaaaagtgatcaatgaagaagatgaatataaagaagaagagaaaattattcaacattactcttcatttcatcggatactcttagtgggtgatggagatttctctttttctctctgtttagctcagttttttggttctgcatcgaatattgttgcttcgtctttacaattatatgatgaagtgatcaaaatgtacaagaatgggcaatcgaacttggaaaagctgaaatctttgggaggaactgtgttgcatggtgtggatgcaactgaaatacagcttcatactgatctcagtaaccagaaatttgataggattatctataattttcctcatgcagggttttatggcagtgaagatcgtgatcatgtaatacaaatgcacaagaatcttgtgggaagtttttttgggagtgccaagaaaatgttgcgagttgatggtcaaattcatgtaacacataaaattgctcctccatatgaccgttgggatcttgttggacttggatggagaaactccttgatttgtatcgaatgtgctgatttcaagattgaaaattacccgggttacaacaataaaagaggagctggttcaaaatgtgatgagccttttcatttgggtgagtgcaataccttcaagtttatattcaacccatctctgaagaatgtgccaagaacaaaacacaagaaacgctttttacatgcgccatctcagaatcttcaaaatacccccaacntcataagtcctccgttttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8411" stop="11014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8711" g_stop="8915" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8916" i_stop="9039" i_length="124">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9040" g_stop="9238" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="404" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9239" i_stop="10336" i_length="1098">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10337" g_stop="10714" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="782" r_length="378" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U571109" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8711" e_stop="8915"/>
          <exon e_start="9040" e_stop="9238"/>
          <exon e_start="10337" e_stop="10714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTAGCTATGGCGGAAGTAGAAGAAAACCCAAAAGTGATCAATGAAGAAGATGAATATAAAGAAGAAGAGAAAATTATTCAACATTACTCTTCATTTCATCGGATACTCTTAGTGGGTGATGGAGATTTCTCTTTTTCTCTCTGTTTAGCTCAGTTTTTTGGTTCTGCATCGAATATTGTTGCTTCGTCTTTACAATTATATGGTAACTTTTTTTTGCTCTATTTCTTATCTGGGTTGTGTTTATTTTGCTTAATCTATGATGGGGTTTTCGCAAAATATGAAATTTTGGAGTTAACTTTTTTTCCCTTTTTTGTTGTTGTGTGCAGATGAAGTGATCAAAATGTACAAGAATGGGCAATCGAACTTGGAAAAGCTGAAATCTTTGGGAGGAACTGTGTTGCATGGTGTGGATGCAACTGAAATACAGCTTCATACTGATCTCAGTAACCAGAAATTTGATAGGATTATCTATAATTTTCCTCATGCAGGGTTTTATGGCAGTGAAGATCGTGATCATGTAATACAGTAAGGTTTCCTCTTTTTTGTTGTGTTGTTTATTTCTGCTTGTATTGTTTATGTAGTGCCATCACGCAAATGGGGTTTATGTGTATAGTTTTTGTGTGAGGGTCTATCGGAAACAACTATGTAACTTCTCAAGGTGGGGGTAAGGCTTGTGTATACACTACTCTGTTCAGACCCCAGTTGTGGGATTGCATTGGGTTTGTTGTTGCTGTAGGGTTCATGTATATACATAAAAAGAAATTAATAAACCTTGTATATATGGTGTGATATAACAAAAAGGATGTTTAACATGGCGAATGAGGTTCGTATGTACCTCTTACATGCCTCTTGTTTTGCATCCTTGATGCATGTAACATTTTTCCGTGGGATTGTTGAAAAGAAATATACATTTTCAAGTTATTTTTGTGTTAGGGGAAGGTAGCATGTATAAGAGTAGAAGGTGGAGTTTGTAGCCTAGTGATCAATAAAGTGGATGAAAAATGTGGGAGACCATGATTCAAACTCTTGAAGAGAAAAAAGGCTTAGGTATTTTCTTCTTATTTCCCAAGTGTTGGTGGTTAGAATCACCTAATCACACGGTAAAATAGTCGAGTTGCATTGACATCACCCTTAAAGAAAATGAGTAGAAGGTGGAGGGATAGGGTTGTATTTAGGTTTTAAATTAGTGCCTCTACTCTGCACCCATACCAAATATACAGTTTTGACAGTTTTGTAACAAACAATGAGTGTGGTGTACCATTGTGGATGAGGACAGGAATAGATGGAGTAGGATGTTTAGGATATCTATAGTGAAGATTCACGGCAATGAGTTAGAAGCTTGTAGAGGACTTGTACCCTTAAAAGACAAAGTTGTTTTCTTCATCCAAGCAAGCGAATATTGTAAAGTGCTTTCATCAACAAAGAAGCCAAACACTCTTGTTAGTGGGACATACCATTCTTTTTTGGCTCATTCAGGCCAATTTTTATCACACTGGGAAGGGAATAAATTCTGGATGCTGTGGAAGTATTGGCTTTTATCATCTAGGCTAGTTTCTTAATTGCCTTTTTTGCACTGGATTTTGCATTTCTCAATGTATTGTGTGCCTTTTTGTCTTTGAGCAGAATGCACAAGAATCTTGTGGGAAGTTTTTTTGGGAGTGCCAAGAAAATGTTGCGAGTTGATGGTCAAATTCATGTAACACATAAAATTGCTCCTCCATATGACCGTTGGGATCTTGTTGGACTTGGATGGAGAAACTCCTTGATTTGTATCGAATGTGCTGATTTCAAGATTGAAAATTACCCGGGTTACAACAATAAAAGAGGAGCTGGTTCAAAATGTGATGAGCCTTTTCATTTGGGTGAGTGCAATACCTTCAAGTTTATATTCAACCCATCTCTGAAGAATGTGCCAAGAACAAAACACAAGAAACGCTTTTTACATGCGCCATCTCAGAATCTTCAAAATGCCCCCAACTCCATAAGTCCTCCGTTTTACTC</genome_strand>
        <mrna_strand>GCACTAGCTATGGCGGAAGTAGAAGAAAACCCAAAAGTGATCAATGAAGAAGATGAATATAAAGAAGAAGAGAAAATTATTCAACATTACTCTTCATTTCATCGGATACTCTTAGTGGGTGATGGAGATTTCTCTTTTTCTCTCTGTTTAGCTCAGTTTTTTGGTTCTGCATCGAATATTGTTGCTTCGTCTTTACAATTATATG............................................................................................................................ATGAAGTGATCAAAATGTACAAGAATGGGCAATCGAACTTGGAAAAGCTGAAATCTTTGGGAGGAACTGTGTTGCATGGTGTGGATGCAACTGAAATACAGCTTCATACTGATCTCAGTAACCAGAAATTTGATAGGATTATCTATAATTTTCCTCATGCAGGGTTTTATGGCAGTGAAGATCGTGATCATGTAATACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCACAAGAATCTTGTGGGAAGTTTTTTTGGGAGTGCCAAGAAAATGTTGCGAGTTGATGGTCAAATTCATGTAACACATAAAATTGCTCCTCCATATGACCGTTGGGATCTTGTTGGACTTGGATGGAGAAACTCCTTGATTTGTATCGAATGTGCTGATTTCAAGATTGAAAATTACCCGGGTTACAACAATAAAAGAGGAGCTGGTTCAAAATGTGATGAGCCTTTTCATTTGGGTGAGTGCAATACCTTCAAGTTTATATTCAACCCATCTCTGAAGAATGTGCCAAGAACAAAACACAAGAAACGCTTTTTACATGCGCCATCTCAGAATCTTCAAAATACCCCCAACNTCATAAGTCCTCCGTTTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U604727" ref_strand="+" ref_description="SGN-U604727 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caccaagctcttcaaattacttatttatgattaagggctttcagcatacttaagagagacatttgttttggcactcccatgtaagaagtagttaattaacaacaaatacttgcataagcatatctagttattcacataatttataggtaatttccaataccaggttgctcatgcataagcatatctagttattcacataatttataggtaatttccaataccatgttgctcaatcagccttcgatgaatctctgttgtaacttcagaattcttgaccggctccaacaatgaagctcttccaaagtttccaagtaatctccagggggcctcccggtctcatccctgaacatcacagcaccatgatgtagagctcgacgaactgaatcttcaacattagtgtccactcttccagatgtttcttggatataagtgaaatacgtcttaaagatcctgaaaagttcacttctggagtcatgtcttgcaggtaaaccaacatgacttggaaaacattcacgtcattcacataagatggacggaaggagtaaatcggaggacttatggagttgggaactttttggagttctgatatgcataattcggaaaactgttcatgccattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="-" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11814" stop="10592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11515" g_stop="10892" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="-" ref_id="SGN-U604727" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11515" e_stop="10892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAGCTCTTCAAATTATTTATTTATGATTAAGGTCTTTCAGCATACTTAAGAGAGACATTTGTTTTGGCACTCCCATGTAAGGAGTAGTTAATTAACAACAAATACTGGCATAAGCATATCTAGTTATTCACATAATTTATAGGTAATTTTCAATACCATGTTGCTCATGCATAAGCATATCTAGTTATTCACATAATTTATAGGTAATTTCCAATACCACGTTGCTCAATCAGCCTTCGATGAATCTCTGTTGTAAATTCAGAATTCTTGACCGGCACCAACAATGAAGCTCTTCCAAAGTTTCCAAGTAATCTCCAGGGGGCCTCCCGGTCTCATCCCTGAACATCACAGCACCATGATGTAGAGCTCGACAAACTGAATCTTCAACATTAGTGTCCACTCTTCCAAATGTTTCTTGAATATAAGTGAAATACTTTTTAAAGATCCTGAAAAGTTCACTTCTGGAGTCATGCCTTGCAGGTAAACCAACATGACTTGGAAAATCATTCACGTCATTCACATAAGATGGACGGAAGGAGTAAATAGGAGGACTTATGGAGTTGGGAACTTTTTGGAAGTTCTGATATGCATAATTTGGAGAACTGTTAATGCCATTGATG</genome_strand>
        <mrna_strand>CACCAAGCTCTTCAAATTACTTATTTATGATTAAGGGCTTTCAGCATACTTAAGAGAGACATTTGTTTTGGCACTCCCATGTAAGAAGTAGTTAATTAACAACAAATACTTGCATAAGCATATCTAGTTATTCACATAATTTATAGGTAATTTCCAATACCAGGTTGCTCATGCATAAGCATATCTAGTTATTCACATAATTTATAGGTAATTTCCAATACCATGTTGCTCAATCAGCCTTCGATGAATCTCTGTTGTAACTTCAGAATTCTTGACCGGCTCCAACAATGAAGCTCTTCCAAAGTTTCCAAGTAATCTCCAGGGGGCCTCCCGGTCTCATCCCTGAACATCACAGCACCATGATGTAGAGCTCGACGAACTGAATCTTCAACATTAGTGTCCACTCTTCCAGATGTTTCTTGGATATAAGTGAAATACGTCTTAAAGATCCTGAAAAGTTCACTTCTGGAGTCATGTCTTGCAGGTAAACCAACATGACTTGGAAAA-CATTCACGTCATTCACATAAGATGGACGGAAGGAGTAAATCGGAGGACTTATGGAGTTGGGAACTTTTTGG-AGTTCTGATATGCATAATTCGGAAAACTGTTCATGCCATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U581947" ref_strand="+" ref_description="SGN-U581947 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>gcaagaacatgaagaaaaaaattgtgattgatcttcctatcaacactgataaatgtagatctaaagctatgcaaattgctgttggaagtccaggggtgatatcagtgaatatagataaggaaaaaggtcatttggtggtaataggaattggtgtcgatttctttaggttgatgcattgcataagaaggaaattcaagtgttctcgaattgtgagtgttgaagaagtaaaacaagaagaaaaaaagcctgaaccccctaaacctaaggatccttgtacttgtacttgtacttgtccttcaacatgtaatccatgtgtacaatactatccaatatgtcaacccgtttatgacacttacgataattcaaattgctctattatgtgatatattgggcatagatcgaactagagagaaagctacgaattttataataagattttagtaattatatttatttaaaaatttagtttttagaattaaaattctctatcttcaatatgttgttttggtctgtttattaattttctttttattaattcttgatttcatgatatgtaatgcacaattttcaattgtatttatatatagagagagatgttaaataatattgttggtagataataattaatgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16259" stop="18421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16448" g_stop="16461" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16462" i_stop="16566" i_length="105">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16567" g_stop="16645" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="93" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16646" i_stop="17581" i_length="936">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17582" g_stop="18121" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="633" r_length="540" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U581947" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16448" e_stop="16461"/>
          <exon e_start="16567" e_stop="16645"/>
          <exon e_start="17582" e_stop="18121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAACATGAAGGTAAGCAAGTCTTTTAAATTATTCTTAGTTTGATTAGTATTTTTTTTTATGTTCTTCATTTGATATAATTTTGTTCTAATTAATGATTAATTATGTGATATACAGAAAAAAATTGTGATTGATCTTCCTATCAACACTGATAAATGTAGATCTAAAGCTATGCAAATTGCTGTTGGAAGTCCAGGTATTTAATTAACTTCGAAAAATATTATTCATCAAAATGAAAGAAATTTACTTTCCTTTAGTACTTTTGAACATAATTAGTTAATTTTTTAGGAAAATGTATAAGTATTTCCTAAATTATAATTGAAATTTCAAAGACGCGTCTTAATTAAACTAAGATTCTATTATCACTGAATTTTTATTTTTATTTTTGTAATTTTGTGCACCTTTTGTTTTACGTGGAACACTCCGTAACTCCACGCAATTGAGGCGCGTGGGAGATATTTGGATATCACGTAAGCCAAAAAAATGCACAAAATTATGAAAAAAAAATAAGATCAAAAGGATAATACAACCTTATTTTAATTAAAATGTGTCTCTAAAATTTTGATCATAGTTCAGAGGAATATTTATACATTTTCCCTTTTTTTTATAATCATCTCGATTACTTTATGATCTTATGACACTTTTAGACATTATTATTGATATTCATAATATCATCTGATTTGTTAAAACCTTGTTATCAATCTTTAAGAAAATATATTTTTTTCTGATAAACATTTTTTTGAAGAAAAAAAAAAGTCATTTTCAGAAGCACATGCATATTCAAAAATGTGACTTTTACTGTGGCAAATACACTAACACACCTTTATATATAAGTACTCTAATATGTTTGCGCCCTTTTTTATTTTACGTGTCACACTCCATGACTCTACGCAATTAAGATGCGTGAGAGATATTTGGATATCACGTAAGTCAAAAAGATGCACAAAATTATAAAAAAAATAAGTTCAGATGGATAATACGACCTTATTTTAATTAAAGTGTATCTCTGAAATTTCAATCATAATCCAAAGGGATACTCGTGCATTCTCTCTCTCTCACACACACACACCAATGAATGTTTGTTTTCCCTGTAGATCATGGCCTTACCACTCGATCTTTGATGACCATGCAGGGGTGATATCAGTGAATATAGATAAGGAAAAAGGTCATTTGGTGGTAATAGGAATTGGTGTCGATTTCTTTAGGTTGATGCATTGCATAAGAAGGAAATTCAAGTGTTCTCGAATTGTGAGTGTTGAAGAAGTAAAACAAGAAGAAAAAAAGCCTGAACCCCCTAAACCTAAGGATCCTTGTACTTGTACTTGTACTTGTCCTTCAACATGTAATCCATGTGTACAATACTATCCAATATGTCAACCCGTTTATGACACTTACGATAATTCAAATTGCTCTATTATGTGATATATTGGGCATAGATCGAACTAGAGAGAAAGCTACGAATTTTATAATAAGATTTTAGTAATTATATTTATTTAAAAATTTAGTTTTTAGAATTAAAATTCTCTATCTTCAATATGTTGTTTTGGTCTGTTTATTAATTTTCTTTTTATTAATTCTTGATTTCATGATATGTAATGCACAATTTTCAATTGTATTTATATATAGAGAGAGATGTATAAATAATA-TGTTGGTAGATAATAATTAATGATAA</genome_strand>
        <mrna_strand>GCAAGAACATGAAG.........................................................................................................AAAAAAATTGTGATTGATCTTCCTATCAACACTGATAAATGTAGATCTAAAGCTATGCAAATTGCTGTTGGAAGTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGATATCAGTGAATATAGATAAGGAAAAAGGTCATTTGGTGGTAATAGGAATTGGTGTCGATTTCTTTAGGTTGATGCATTGCATAAGAAGGAAATTCAAGTGTTCTCGAATTGTGAGTGTTGAAGAAGTAAAACAAGAAGAAAAAAAGCCTGAACCCCCTAAACCTAAGGATCCTTGTACTTGTACTTGTACTTGTCCTTCAACATGTAATCCATGTGTACAATACTATCCAATATGTCAACCCGTTTATGACACTTACGATAATTCAAATTGCTCTATTATGTGATATATTGGGCATAGATCGAACTAGAGAGAAAGCTACGAATTTTATAATAAGATTTTAGTAATTATATTTATTTAAAAATTTAGTTTTTAGAATTAAAATTCTCTATCTTCAATATGTTGTTTTGGTCTGTTTATTAATTTTCTTTTTATTAATTCTTGATTTCATGATATGTAATGCACAATTTTCAATTGTATTTATATATAGAGAGAGATGT-TAAATAATATTGTTGGTAGATAATAATTAATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U572854" ref_strand="+" ref_description="SGN-U572854 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157353296|emb|CAO45219.1| (e_value=6e-107) unnamed; (*ATH) AT1G55760.1 (e_value=4e-94) | Symbol: None | BTB/POZ domain-containing protein, Interpro IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56 protein (GI:17483747) (Mus musculus) | chr1:20850592-20852720 REVERSE | Aliases: F20N2.15; ">
      <seq>gaacaaatcacccaaaagaaaaagaataaaaaacctttctttttctcccaattttttctcaaaacaaaaccaaaaccaaaacctctctgcaaaacttcactatcaatggcgtaaagcaatatcaagagaccctcttgcgtgtccaaaatctttacacaattggggccatacccacaagaaaagaaggaaaaaaaaaaccttaaaagatacctatttacagtggaagtaaaagcatttaaaaattgatttgtgtatgaggaatatagagaaaaaaagcaaagctgggaaagcacggagatttattgttggaaggtttattcgattgtatccatgaaatcacgtcggcgcttgtgttttcgaagatgagtgattctgcttatcgtgttgatactacttctcgtcttgctcaatggcgaatcgacaatttggcttcttgtacttatcgcaaatcagatcctttcaagatcggaaaatggaattggcatttagctgtggagaagaacaggacattgtctattaaattatatccagagatatcaaatttcacaagagagaatcctccagttgcatcttttattattagattaatctcgtcgttgggagatcgccagactttgattcaccctgaagttgtagacaagcaactcaagagtagcgaagattttgtttggcctattgaaatccccttaaccgggaagttcatcatcgacgttgaattccttgatctcaagactgcaacgcctaatagtggggagctgtgctcaatctgggctgaaggattaaccgagaaacaatcgaatgcaactgctctgtcatcacttggccggatgttgtctgagagcattcacacggacatcataatcaatgcttcagatggaagcattggagcgcatcgtgcagttcttgctgcaaggtcacctgtcttccgaagcatgttctcccatgacctcaaagagaaagaattatctgctataaacatctccgacatgtcaatagaagcttgccaatgctttctgaattacatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="20709" stop="23268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21008" g_stop="21488" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21489" i_stop="21735" i_length="247">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21736" g_stop="21881" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="627" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21882" i_stop="21966" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21967" g_stop="22085" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="746" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22086" i_stop="22686" i_length="601">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22687" g_stop="22968" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="1028" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U572854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1028</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21008" e_stop="21488"/>
          <exon e_start="21736" e_stop="21881"/>
          <exon e_start="21967" e_stop="22085"/>
          <exon e_start="22687" e_stop="22968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAATCACCCAAAAGAAAAAGAATAAAAAACCTTTCTTTTTCTCCCAATTTTTTCTCAAAACAAAACCAAAACCAAAACCTCTCTGCAAAACTTCACTATCAATGGCGTAAAGCAATATCAAGAGACCCTCTTGCGTGTCCAAAATCTTTACACAATTGGGGCCATACCCACAAGAAAAGAAGGAAAAAAAAAACCTTAAAAGATACCTATTTACAGTGGAAGTAGAAGCATTTAAAAATTGATTTGTGTATGAGGAATATAGAGAAAAAAAGCAAAGCTGGGAAAGCACGGAGATTTATTGTTGGAAGGTTTATTCGATTGTATCCATGAAATCACGTCGGCGCTTGTGTTTTCGAAGATGAGTGATTCTGCTTATCGTGTTGATACTACTTCTCGTCTTGCTCAATGGCGAATCGACAATTTGGCTTCTTGTACTTATCGCAAATCAGATCCTTTCAAGATCGGAAAATGGAATTGGTCAGTTTTTTTGTACTCAAAATCCACCAATTTATTGAATTTGTAGCTCCACCTCTGTTTTAATGCCTAAAATTAGCTGCAACGATAACATATTCAGTATAATTCTACGAGTAGGGTTTTGAAAATGATAGAGTAGAGATAGAAAAATTGTTTATGATAGAAAAAGGGGAGATAGTGTAATTGAATGAGGTTTGGAGGAGTGTATGTTATGTTGATTGAATTTTTTTGTTGTTGTTTGATTGTGAAGGCATTTAGCTGTGGAGAAGAACAGGACATTGTCTATTAAATTATATCCAGAGATATCAAATTTCACAAGAGAGAATCCTCCAGTTGCATCTTTTATTATTAGATTAATCTCGTCGTTGGGAGATCGCCAGACTTTGATTCACCCTGGTAAAATTGTCTTAAAATTCATCAATCTTTTTTTATGTGTTTTTGTGATTAAAGCTGTCTTCTTTTTTGTGTTGGTTTTTTGTAGAAGTTGTAGACAAGCAACTCAAGAGTAGCGAAGATTTTGTTTGGCCTATTGAAATCCCCTTAACCGGGAAGTTCATCATCGACGTTGAATTCCTTGATCTCAAGACTGCAACGCCTAATGTACTGTTTCCTCATTTCCTCGTCTTTTACAGTTATTACTATGTTCATATATTCATATTATCGAGCATGTTTTTCTTAATATAATGACGTAAACAATTCTTTTGATACACAAAAACTTAATTTTGGATGCATCATAGTTAATTGACTTTCTGTGAGAAAAAGCAATAGTTGAGTGACTTTCTAAGAGAAGAACTCATAGTTGAGTGACTCTCTAAGAATAACGTGTAGTTAAGTGACCATCTGAGATATTATCTCATTAGATTTTTCCTATCAAATATAATGTCAGTGGTGGATCTAACCATCAGTTCACGGGTTCTGCAGAACCCGGTGTCTTGGTGTCTAACACTGTATATGTCGAAAATCAAGTATAGATAGAGTTAGATTATACTTTTCAGAACTCAATGTCTTGATTGTGGATTAGTCACGTACTGCCTAACGTGGTGTTCTGCTCCACGAGTAAGGATAAAGTTTGTTCAATGGATGAGATGTTTCTGTTTCTAATGTTACATTTCAGAACTTCTCTAACCATGTGGAAACTTATGCGTGGAAGATTACTGTAGTGTTCCTCATTCATGTTCATTTGTGTTTTGTTAACTGGCAGAGTGGGGAGCTGTGCTCAATCTGGGCTGAAGGATTAACCGAGAAACAATCGAATGCAACTGCTCTGTCATCACTTGGCCGGATGTTGTCTGAGAGCATTCACACGGACATCATAATCAATGCTTCAGATGGAAGCATTGGAGCGCATCGTGCAGTTCTTGCTGCAAGGTCACCTGTCTTCCGAAGCATGTTCTCCCATGACCTCAAAGAGAAAGAATTATCTGCTATAAACATCTCCGACATGTCAATAGAAGCTTGCCAATGCTTTCTGAATTACATTTAC</genome_strand>
        <mrna_strand>GAACAAATCACCCAAAAGAAAAAGAATAAAAAACCTTTCTTTTTCTCCCAATTTTTTCTCAAAACAAAACCAAAACCAAAACCTCTCTGCAAAACTTCACTATCAATGGCGTAAAGCAATATCAAGAGACCCTCTTGCGTGTCCAAAATCTTTACACAATTGGGGCCATACCCACAAGAAAAGAAGGAAAAAAAAAACCTTAAAAGATACCTATTTACAGTGGAAGTAAAAGCATTTAAAAATTGATTTGTGTATGAGGAATATAGAGAAAAAAAGCAAAGCTGGGAAAGCACGGAGATTTATTGTTGGAAGGTTTATTCGATTGTATCCATGAAATCACGTCGGCGCTTGTGTTTTCGAAGATGAGTGATTCTGCTTATCGTGTTGATACTACTTCTCGTCTTGCTCAATGGCGAATCGACAATTTGGCTTCTTGTACTTATCGCAAATCAGATCCTTTCAAGATCGGAAAATGGAATTG.......................................................................................................................................................................................................................................................GCATTTAGCTGTGGAGAAGAACAGGACATTGTCTATTAAATTATATCCAGAGATATCAAATTTCACAAGAGAGAATCCTCCAGTTGCATCTTTTATTATTAGATTAATCTCGTCGTTGGGAGATCGCCAGACTTTGATTCACCCTG.....................................................................................AAGTTGTAGACAAGCAACTCAAGAGTAGCGAAGATTTTGTTTGGCCTATTGAAATCCCCTTAACCGGGAAGTTCATCATCGACGTTGAATTCCTTGATCTCAAGACTGCAACGCCTAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGGGAGCTGTGCTCAATCTGGGCTGAAGGATTAACCGAGAAACAATCGAATGCAACTGCTCTGTCATCACTTGGCCGGATGTTGTCTGAGAGCATTCACACGGACATCATAATCAATGCTTCAGATGGAAGCATTGGAGCGCATCGTGCAGTTCTTGCTGCAAGGTCACCTGTCTTCCGAAGCATGTTCTCCCATGACCTCAAAGAGAAAGAATTATCTGCTATAAACATCTCCGACATGTCAATAGAAGCTTGCCAATGCTTTCTGAATTACATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U570439" ref_strand="+" ref_description="SGN-U570439 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>tggcggctctgctcccaagtctgcatctttctctcttcagtcggatctcaaaggtatccataaaccgatccatcttcttcttcttcaacgattcaatccaaatccctaattttctctgcaaatctatacgtatagtatatctgtatctatccattttccccttaattaagcacctttgagttgtcactatcaattatggcttcttctcctggtaatccgaaccagccaggtggtactggttcaggaccatttgatatacacaaattcttcaaaccctcaaccccaacaaaccctaatccccaaaaccctataatttcatcccattatccatctccaaacgcttcatacccaccacccacccccggagccggtgctggagtcggtggggtttacccttaccaaactcagactacaaccccttttcgtcatcaccctcaattcactcacaacttgccgcaatacagtacaccacatgatacccagttaatgcatcagcagagatccatgtctttccccactccaccgcttcaaccaccaccacctactagtagtcctcatcaattccctaaccctaatcctggtgctacgcttatggcactgttgagtcctcaaccgtctacttcggaagttcagatacagtccactatgcctatgcctcctatacaacctacctcttcggggtctgagctttcanatttttcctctggaccgaangttggtgttgctcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="28654" stop="29984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28954" g_stop="29684" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U570439" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28954" e_stop="29684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGGCTCTGCTCCCAAGTCTGCATCTTTCTCTCTTCAGTCGGATCTCAAAGGTATCCATAAACCGATCCATCTTCTTCTTCTTCAACGATTCAATCCAAATCCCTAATTTTCTCTGCAAATCTATACGTATAGTATATCTGTATCTATCCATTTTCCCCTTAATTAAGCACCTTTGAGTTGTCACTATCAATTATGGCTTCTTCTCCTGGTAATCCGAACCAGCCAGGTGGTACTGGTTCAGGACCATTTGATATACACAAATTCTTCAAACCCTCAACCCCAACAAACCCTAATCCCCAAAACCCTATAATTTCATCCCATTATCCATCTCCAAACGCTTCATACCCACCACCCACCCCCGGAGCCGGTGCTGGAGTCGGTGGGGTTTACCCTTACCAAACTCAGACTACAACCCCTTTTCGTCATCACCCTCAATTCACTCACAACTTGCCGCAATACAGTACACCACATGATACCCAGTTAATGCATCAGCAGAGATCCATGTCTTTCCCCACTCCACCGCTTCAACCACCACCACCTACTAGTAGTCCTCATCAATTCCCTAACCCTAATCCTGGTGCTACGCTTATGGCACTGTTGAGTCCTCAACCGTCTACTTCGGAAGTTCAGATACAGTCCACTATGCCTATGCCTCCTATACAACCTACCTCTTCGGGGTCTGAGCTTTCAGATTTTTCCTCTGGACCGAATGTTGGTGTTGCTCATTC</genome_strand>
        <mrna_strand>TGGCGGCTCTGCTCCCAAGTCTGCATCTTTCTCTCTTCAGTCGGATCTCAAAGGTATCCATAAACCGATCCATCTTCTTCTTCTTCAACGATTCAATCCAAATCCCTAATTTTCTCTGCAAATCTATACGTATAGTATATCTGTATCTATCCATTTTCCCCTTAATTAAGCACCTTTGAGTTGTCACTATCAATTATGGCTTCTTCTCCTGGTAATCCGAACCAGCCAGGTGGTACTGGTTCAGGACCATTTGATATACACAAATTCTTCAAACCCTCAACCCCAACAAACCCTAATCCCCAAAACCCTATAATTTCATCCCATTATCCATCTCCAAACGCTTCATACCCACCACCCACCCCCGGAGCCGGTGCTGGAGTCGGTGGGGTTTACCCTTACCAAACTCAGACTACAACCCCTTTTCGTCATCACCCTCAATTCACTCACAACTTGCCGCAATACAGTACACCACATGATACCCAGTTAATGCATCAGCAGAGATCCATGTCTTTCCCCACTCCACCGCTTCAACCACCACCACCTACTAGTAGTCCTCATCAATTCCCTAACCCTAATCCTGGTGCTACGCTTATGGCACTGTTGAGTCCTCAACCGTCTACTTCGGAAGTTCAGATACAGTCCACTATGCCTATGCCTCCTATACAACCTACCTCTTCGGGGTCTGAGCTTTCANATTTTTCCTCTGGACCGAANGTTGGTGTTGCTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584146" ref_strand="+" ref_description="SGN-U584146 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157353291|emb|CAO45214.1| (e_value=4e-167) unnamed; (*ATH) AT3G13300.2 (e_value=2e-142)  Symbol: None | transducin family protein / WD-40 repeat family protein, contains 2 WD-40 repeats (PF00400); autoantigen locus HUMAUTANT (GI:533202) (Homo sapiens) and autoantigen locus HSU17474 (GI:596134) (Homo sapiens) | chr3:4303881-4310220 FORWA... ; (*SWP) sp|Q7ZXT3|EDC4_XENLA (e_value=1e-16) Enhancer of mRNA-decapping protein 4 OS=Xenopus laevis GN=edc4; ">
      <seq>ggtcgcaccttatctcccgagacctatactgtagaggaatctaggcagtttgatggggttagtggaagtgagggaccatctcaaccttcagttacaccagaggaagatcatgactctgcaaaggacatctctgaaaaagatttagactcaactatgtcagtcactgttcatcaaccaccagctcccagtgtaaaagggaaaaagcaaaaggggaagaattctcaagtgtctggcccatcttcagcatcgcctagtgcttttaattcaacagattctccaaatgaggctgttgtcagctcaagtaccccttctatggaaagtgctttctcacaaattttgtccatgcgtgagatgcttaatcaggttctgactatgcaaaaagaaacacaaaagcagatggaagtgatggtcgctgttccagtgaccaaagaaggaagaagacttgaagctgccttgggaaggagcatggaaaaatctgtcaaggccaattctgatgctttatgggctcgtttacaagaagagagtgcaaaacaggagaagtctctccgtgatcgtacacaacaaataaccaatttgatctctaactgcttaaataaggacatgccaggtctgatggaaaaattaatgaagaaagagctagcagctgttggacaagctgtagcacgcagcattacccctgctatagagaaaacaatatcatctgcaattttagaggccttccagaaaggagttggtgacaaggcagtgaaccaactagagaaagcagtaaactccaaacttgaagctactgtagctagacaaatccaagcacagttccaaacctctggcaagcaagctcttcaggaaacactgaaatctactctggaagtctcagtgatccctgccttcgagatgtcatgcaaggcaatgtttgagcaagtaaattcaacatttcagaaaggcattgctgaccacacagttgctgcacaacagcaatttgagtccgtgcattcacctttggcaatcgctctgagagatgccatcaattcagcatcggcaatgacacagacactgagcggagagcttgctgatagtcagagacagttgcttgctcttgcagtttctggagcaaattcccaatcagcaaatccactcaaccacatgaataatggatcattgctacatgaaaagattgagacacctccagatccaaccaaagagatatctagacagttaggggagcacaagtatgaggaagcattcactgcagcattacaaatgagtgatgtgtcaattgtgtcatggttatgctctcaggttgatttggctgggattttatcgttgaatcccctccctctgagccaaggagtgctcctttcccttcttcagcagttatcgtgtggtattagctcagagacggtccaaaaactctcttggatgagggatgtgctctctgccatcaatccaaatgacccactgattgtagtgcatgttcggcccatctttgagcaagtatatcagatgttagtacaacgcagaaacgctgctaccactcctcctgctgaactttcaatcattcggcttcttgtgcatgttatcaattcgatgatgatggctgttaaatgatgatcctatttggtgaacgtagtaaaagcccccaaatcccagtggatttcatgaaaaggcttcaagtcttacccgacaattgaagtgtacagtgtacaccaacctccaattatctcttctctcctttggttcaactctttctacataaaatctgtaatcgttttgcctaaattctcaagttgtagacacttacttagcaaaagaaaaacaaaaagtaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="34204" stop="38796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34503" g_stop="34865" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34866" i_stop="35517" i_length="652">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35518" g_stop="35877" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="723" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35878" i_stop="35948" i_length="71">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35949" g_stop="36068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="843" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36069" i_stop="36335" i_length="267">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36336" g_stop="36506" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="844" r_stop="1014" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36507" i_stop="37072" i_length="566">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37073" g_stop="37228" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1015" r_stop="1170" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37229" i_stop="37402" i_length="174">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37403" g_stop="37528" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1171" r_stop="1296" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37529" i_stop="37966" i_length="438">
            <donor d_prob="0.577" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37967" g_stop="38498" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1297" r_stop="1828" r_length="532" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U584146" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34503" e_stop="34865"/>
          <exon e_start="35518" e_stop="35877"/>
          <exon e_start="35949" e_stop="36068"/>
          <exon e_start="36336" e_stop="36506"/>
          <exon e_start="37073" e_stop="37228"/>
          <exon e_start="37403" e_stop="37528"/>
          <exon e_start="37967" e_stop="38498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGCACCTTATCTCCCGAGACCTATACTGTAGAGGAATCTAGGCAGTTTGATGGGGTTAGTGGAAGTGAGGGACCATCTCAACCTTCAGTTACACCAGAGGAAGATCATGACTCTGCAAAGGACATCTCTGAAAAAGATTTAGACTCAACTATGTCAGTCACTGTTCATCAACCACCAGCTCCCAGTGTAAAAGGGAAAAAGCAAAAGGGGAAGAATTCTCAAGTGTCTGGCCCATCTTCAGCATCGCCTAGTGCTTTTAATTCAACAGATTCTCCAAATGAGGCTGTTGTCAGCTCAAGTACCCCTTCTATGGAAAGTGCTTTCTCACAAATTTTGTCCATGCGTGAGATGCTTAATCAGGTGCTTGCCTTTTGTCCTAATAGCATATGTACTTATGTATGTTTAGTTTAGTGCACTTCTCATTTTTTTATGCCACTATAATTGTATATATCTTTCTTCATTTTTTTGTTTTAATTTTATTGTTACCTGTGTTGGTACTTAGTTTGACATATTCTCACTGTTTATGCATTAGTATTCAATGTAATTATAATTGTTGCTTTCATCATTCTCATCATTCATGAACGGTATCTTCATACTTTCCTTGCTCTTTATGCGTCCTCTAACTTCCTTCTGCAGTATTTCTTAGCCTGGCTGATTATCCTCCTGAATTCTGTTGGACAATTTTTCCAAATTCCATAATTTTGGTGGTTTTTTACTTGTTCATCTTCTGCAACTATTTTTATCTCAGAATTTTCATTAAGTAACTCTTCCTCAATGGTGGAAGCTGATTTTCTTTTATATGCTTCTCTGCGTGGGAAGAACATTCTTTACATAATTGAAATGTGTCATGTATTGAAGATATTTTTAAGATGCTGACATTTCAACCGTCAGTTCTATTGATTTGATTACACCAATCCAAACCAAAAAATAAATAAAATACTCATTGTAGTAATGTTCTTCGATATCTTATTCTTATGTGTTGTCTTTTTAATCTGTTTGCTGTTCCATTTAGGTTCTGACTATGCAAAAAGAAACACAAAAGCAGATGGAAGTGATGGTCGCTGTTCCAGTGACCAAAGAAGGAAGAAGACTTGAAGCTGCCTTGGGAAGGAGCATGGAAAAATCTGTCAAGGCCAATTCTGATGCTTTATGGGCTCGTTTACAAGAAGAGAGTGCAAAACAGGAGAAGTCTCTCCGTGATCGTACACAACAAATAACCAATTTGATCTCTAACTGCTTAAATAAGGACATGCCAGGTCTGATGGAAAAATTAATGAAGAAAGAGCTAGCAGCTGTTGGACAAGCTGTAGCACGCAGCATTACCCCTGCTATAGAGAAAACAATATCATCTGCAATTTTAGAGGCCTTCCAGGTTATTATTATGAAAGTATGAAGCTTTTCTTGTCTGGATTTGCTTGTGCTTGACTGAATGTTATGGTGCAGAAAGGAGTTGGTGACAAGGCAGTGAACCAACTAGAGAAAGCAGTAAACTCCAAACTTGAAGCTACTGTAGCTAGACAAATCCAAGCACAGTTCCAAACCTCTGGCAAGCAAGCTCTTCAGGTGAGCTGAAAGTCTCTGATTGAGCAATACCAGTAGTGTGTACAAAAACATTTTTCTTGCAATGTCATGCTGCTCGTGTTTTTTTTTTAATGTATGGTTTATGATGCTGGATTTGTAGTTACTCTTGTCATCTATAATATCACCAAGAGTGTAACTTGATGATCCTCTCAGCATGCTTCCCTTCCTGCTGCCCACCTCATTTTAGGGGGATACTGTACTCCTCTAATAAGTGTTGAATGTTTCTTATCTGATGGTACTGTCATGCAGGAAACACTGAAATCTACTCTGGAAGTCTCAGTGATCCCTGCCTTCGAGATGTCATGCAAGGCAATGTTTGAGCAAGTAAATTCAACATTTCAGAAAGGCATTGCTGACCACACAGTTGCTGCACAACAGCAATTTGAGTCCGTGCATTCACCTTTGGCAATCGCTCTGAGAGTACGGACCTTTATATTTTGATTAATCCTTTTGTTATCTTGCTAATCTTTTGTTGAACTGTTCTTTTTATGCTCTTACTTTATCTAAACTACATCAATTAATCATGCCTTCAAAATGCAAAGTTGGTTGACTAAGCCCTTCATGCTACTTTTCACTGTTATTCTCCAAAAACAAGCATCCAATCTATTACGCAGCTTGTTTCATTATACTCGGTTCTCAATTCAACTTTTTATTACACTCATGTTTCTGAAACAAGACAAATCACTTGTTCCTCTCGTGTTAATAGTTGAGTGGAGTTACTGATCTTCTCAAAATGGGAAGGGGGGAGTGGAATCTTTGTTATGTGTAAATCTATTTATTTTTTTCCCAACAGATAATTAAATTTGTCTTTGTTCAAGTGGATGTTTCATTTCTTTCTTTTTTCCTCCCTCCATGCTTCCATACTTGGTGAATGTGTTGATGCGATTTTGCGTGGACTCTGAGATATTTAAATCATGGATACATTTCGGAATTGACTGGAATCACATTCTCCTTAAAATTGGATACTCATTAGGCTCAATTTTCAGGATGCCATCAATTCAGCATCGGCAATGACACAGACACTGAGCGGAGAGCTTGCTGATAGTCAGAGACAGTTGCTTGCTCTTGCAGTTTCTGGAGCAAATTCCCAATCAGCAAATCCACTCAACCACATGAATAATGGATCATTGCTACATGAAAAGGTTCTTCCCATACCTTAGTGGATCAAAGAGTTAGCTGTTTATATTTTGATATTAAGAATTTAGTAGTTCTTTTTTGTTATTAAGAATTTGCTACTTATACTTTGCTATCACCCTCTTCTTCTTCTTTGTCTTTACTTACTTTGATATCATCATGTTTTTATGTCTGCAATATAGATTGAGACACCTCCAGATCCAACCAAAGAGATATCTAGACAGTTAGGGGAGCACAAGTATGAGGAAGCATTCACTGCAGCATTACAAATGAGTGATGTGTCAATTGTGTCATGGTTATGCTCTCAGGTATACTGATTACATTGGCACTTATTTATATGATTATATCAGGTAGAACCCCGTTTCTGTGAAATATTGTTTTATGAGGAATAAAGGAGATCAATAAAATCCAGGAAAAGAGGCACAGTTGTGGGAGAGAGAAAAAAGTAAACGGGGTATCTTAATGGTGTTAAATGTTTTTGTACAAAAATGAAAAACTTGGTTTTTGCCATTAGTTTAGAGCATATGTTTTTTTTTTTTTTAACCTTAGATCAAATAAAATTGGTATGATACACAGAGAAGAATGTTCTTTTACCTCAGAACCTATTCAAAGAAGTAACTCAAATTTCTGTTGTAAAGAATTTTATGTGCTGAGTTATGTAATGGGGGATAAAATGATCTTGCTGATTTTGATGGCATTATGTGGTAAGGTCTTATTCCTGATTGTTTCCTGGTGTGTTATGCCAGGTTGATTTGGCTGGGATTTTATCGTTGAATCCCCTCCCTCTGAGCCAAGGAGTGCTCCTTTCCCTTCTTCAGCAGTTATCGTGTGGTATTAGCTCAGAGACGGTCCAAAAACTCTCTTGGATGAGGGATGTGCTCTCTGCCATCAATCCAAATGACCCACTGATTGTAGTGCATGTTCGGCCCATCTTTGAGCAAGTATATCAGATGTTAGTACAACGCAGAAACGCTGCTACCACTCCTCCTGCTGAACTTTCAATCATTCGGCTTCTTGTGCATGTTATCAATTCGATGATGATGGCTGTTAAATGATGATCCTATTTGGTGAACGTAGTAAAAGCCCCCAAATCCCAGTGGATTTCATGAAAAGGCTTCAAGTCTTACCCGACAATTGAAGTGTACAGTGTACACCAACCTCCAATTATCTCTTCTCTCCTTTGGTTCAACTCTTTCTACATAAAATCTGTAATCGTTTTGCCTAAATTCTCAAGTTGTAGACACTTACTTAGCAAAAGAAAAACAAAAAGTAATTTTC</genome_strand>
        <mrna_strand>GGTCGCACCTTATCTCCCGAGACCTATACTGTAGAGGAATCTAGGCAGTTTGATGGGGTTAGTGGAAGTGAGGGACCATCTCAACCTTCAGTTACACCAGAGGAAGATCATGACTCTGCAAAGGACATCTCTGAAAAAGATTTAGACTCAACTATGTCAGTCACTGTTCATCAACCACCAGCTCCCAGTGTAAAAGGGAAAAAGCAAAAGGGGAAGAATTCTCAAGTGTCTGGCCCATCTTCAGCATCGCCTAGTGCTTTTAATTCAACAGATTCTCCAAATGAGGCTGTTGTCAGCTCAAGTACCCCTTCTATGGAAAGTGCTTTCTCACAAATTTTGTCCATGCGTGAGATGCTTAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGACTATGCAAAAAGAAACACAAAAGCAGATGGAAGTGATGGTCGCTGTTCCAGTGACCAAAGAAGGAAGAAGACTTGAAGCTGCCTTGGGAAGGAGCATGGAAAAATCTGTCAAGGCCAATTCTGATGCTTTATGGGCTCGTTTACAAGAAGAGAGTGCAAAACAGGAGAAGTCTCTCCGTGATCGTACACAACAAATAACCAATTTGATCTCTAACTGCTTAAATAAGGACATGCCAGGTCTGATGGAAAAATTAATGAAGAAAGAGCTAGCAGCTGTTGGACAAGCTGTAGCACGCAGCATTACCCCTGCTATAGAGAAAACAATATCATCTGCAATTTTAGAGGCCTTCCAG.......................................................................AAAGGAGTTGGTGACAAGGCAGTGAACCAACTAGAGAAAGCAGTAAACTCCAAACTTGAAGCTACTGTAGCTAGACAAATCCAAGCACAGTTCCAAACCTCTGGCAAGCAAGCTCTTCAG...........................................................................................................................................................................................................................................................................GAAACACTGAAATCTACTCTGGAAGTCTCAGTGATCCCTGCCTTCGAGATGTCATGCAAGGCAATGTTTGAGCAAGTAAATTCAACATTTCAGAAAGGCATTGCTGACCACACAGTTGCTGCACAACAGCAATTTGAGTCCGTGCATTCACCTTTGGCAATCGCTCTGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCATCAATTCAGCATCGGCAATGACACAGACACTGAGCGGAGAGCTTGCTGATAGTCAGAGACAGTTGCTTGCTCTTGCAGTTTCTGGAGCAAATTCCCAATCAGCAAATCCACTCAACCACATGAATAATGGATCATTGCTACATGAAAAG..............................................................................................................................................................................ATTGAGACACCTCCAGATCCAACCAAAGAGATATCTAGACAGTTAGGGGAGCACAAGTATGAGGAAGCATTCACTGCAGCATTACAAATGAGTGATGTGTCAATTGTGTCATGGTTATGCTCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATTTGGCTGGGATTTTATCGTTGAATCCCCTCCCTCTGAGCCAAGGAGTGCTCCTTTCCCTTCTTCAGCAGTTATCGTGTGGTATTAGCTCAGAGACGGTCCAAAAACTCTCTTGGATGAGGGATGTGCTCTCTGCCATCAATCCAAATGACCCACTGATTGTAGTGCATGTTCGGCCCATCTTTGAGCAAGTATATCAGATGTTAGTACAACGCAGAAACGCTGCTACCACTCCTCCTGCTGAACTTTCAATCATTCGGCTTCTTGTGCATGTTATCAATTCGATGATGATGGCTGTTAAATGATGATCCTATTTGGTGAACGTAGTAAAAGCCCCCAAATCCCAGTGGATTTCATGAAAAGGCTTCAAGTCTTACCCGACAATTGAAGTGTACAGTGTACACCAACCTCCAATTATCTCTTCTCTCCTTTGGTTCAACTCTTTCTACATAAAATCTGTAATCGTTTTGCCTAAATTCTCAAGTTGTAGACACTTACTTAGCAAAAGAAAAACAAAAAGTAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U575932" ref_strand="+" ref_description="SGN-U575932 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157353290|emb|CAO45213.1| (e_value=9e-27) unnamed; (*ATH) AT3G13310.1 (e_value=1e-23) | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, similar to J11 protein (Arabidopsis thaliana) GI:9843641; contains Pfam profile: PF00226 DnaJ domain | chr3:4310615-4311448 REVERSE | Aliases: MDC11.6; (*SWP) sp|Q9FYB5|DNJ11_ARATH (e_value=2e-16) Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11; ">
      <seq>gctaaaacaaaatttgaaatgattcaatccctaaccctaatttcttcatctcccttcccctttccccttcatcaatcctccaattccgccgacgcggcgatacagtctaatcgctacagtttattcaacggaaagagtaatcggagggggagaatatgtgcatctgccgttgccgaagctccgatgatgatggagaaaagatcggtgagtttatatgagattttaagagttaaaagagatgcatcaccgaaagagattaaagctgcttaccggaatttagcgaaattgtatcatcctgactctgcttctctgccggaggaatcgtccgacggacggaatttcattgagattcacgatgcttatgtcacgctatctgatccttcagctagagctctctacgatctgaagctgagcgttggctctcgccggcgaggttttgcccggtcggttgatggatttcgtatatacccgacccggagatgggaaacggatcaatgctggtgataggagatgatttaggaacctgcatttctccgcactctactttttttttttgtctaatggcatttttatggagatttagctaatgtatatactatatcctgcttttaattattatttttttggttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="-" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39780" stop="38549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39481" g_stop="38849" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="-" ref_id="SGN-U575932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39481" e_stop="38849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAAACAAAATTTGAAATGATTCAATCCCTAACCCTAATTTCTTCATCTCCCTTCCCCTTTCCCCTTCATCAATCCTCCAATTCCGCCGACGCGGCGATACAGTCTAATCGCTACAGTTTATTCAACGGAAAGAGTAATCGGAGGGGGAGAATATGTGCATCTGCCGTTGCCGAAGCTCCGATGATGATGGAGAAAAGATCGGTGAGTTTATATGAGATTTTAAGAGTTAAAAGAGATGCATCACCGAAAGAGATTAAAGCTGCTTACCGGAATTTAGCGAAATTGTATCATCCTGACTCTGCTTCTCTGCCGGAGGAATCGTCCGACGGACGGAATTTCATTGAGATTCACGATGCTTATGTCACGCTATCTGATCCTTCAGCTAGAGCTCTCTACGATCTGAAGCTGAGCGTTGGCTCTCGCCGGCGAGGTTTTGCCCGGTCGGTTGATGGATTTCGTATATACCCGACCCGGAGATGGGAAACGGATCAATGCTGGTGATAGGAGATGATTTAGGAACCTGCATTTCTCCGCACTCTACTTTTTTTTTTTGTCTAATGGCATTTTTATGGAGATTTAGCTAATGTATATACTATATCCTGCTTTTAATTATTATTTTTTTGGTTCCTT</genome_strand>
        <mrna_strand>GCTAAAACAAAATTTGAAATGATTCAATCCCTAACCCTAATTTCTTCATCTCCCTTCCCCTTTCCCCTTCATCAATCCTCCAATTCCGCCGACGCGGCGATACAGTCTAATCGCTACAGTTTATTCAACGGAAAGAGTAATCGGAGGGGGAGAATATGTGCATCTGCCGTTGCCGAAGCTCCGATGATGATGGAGAAAAGATCGGTGAGTTTATATGAGATTTTAAGAGTTAAAAGAGATGCATCACCGAAAGAGATTAAAGCTGCTTACCGGAATTTAGCGAAATTGTATCATCCTGACTCTGCTTCTCTGCCGGAGGAATCGTCCGACGGACGGAATTTCATTGAGATTCACGATGCTTATGTCACGCTATCTGATCCTTCAGCTAGAGCTCTCTACGATCTGAAGCTGAGCGTTGGCTCTCGCCGGCGAGGTTTTGCCCGGTCGGTTGATGGATTTCGTATATACCCGACCCGGAGATGGGAAACGGATCAATGCTGGTGATAGGAGATGATTTAGGAACCTGCATTTCTCCGCACTCTACTTTTTTTTTTTGTCTAATGGCATTTTTATGGAGATTTAGCTAATGTATATACTATATCCTGCTTTTAATTATTATTTTTTTGGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584197" ref_strand="+" ref_description="SGN-U584197 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157353290|emb|CAO45213.1| (e_value=2e-25) unnamed; (*ATH) AT3G13310.1 (e_value=2e-22) | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, similar to J11 protein (Arabidopsis thaliana) GI:9843641; contains Pfam profile: PF00226 DnaJ domain | chr3:4310615-4311448 REVERSE | Aliases: MDC11.6; (*SWP) sp|Q9FYB5|DNJ11_ARATH (e_value=3e-16) Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11; ">
      <seq>acaattttcttccttcttctcactccactgaaaatatcattttccgatggttcaatccctaacactaccggccggaaatactttccgtttttctctacacaaccttccttcttccacagccggtttcagatccggagtcacatttccccgaaggaataatcgaacagcagcggtatatgccgccgccgttgcggaagcaccgccggaattgcaaaggagaacaccggcgagtctctacgatgtactaagggtaaaatcaaatgcgtcacccaaagagataaaaacagcttaccggaatttagctaagctataccatcccgatgctgcgtctctgtcggaggaatcttccgacggacggcatttcattgagattcacgaagcttatgctacgttatcagatcctgtttctagagatctctatgatctcaagctaaacatgagctccggccgacgaggttttgggagctccggcgatggaattcgtaggaatgggtcagagttttacccgacccgaaggtgggaaacggatcagtgttggtgacgtcagatgattaggatttaggggacccactttgccgcgttaacactgtatatatcctgtaattttttttcaatggaatttaaaaaaaaacaggtcttgtttgaggataatgagtaaaatgtatatttgtcaatattatctcttattcataataaattaggttaattctttttaaaaaatgagtaaggtgaattatgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="-" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42399" stop="41058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42099" g_stop="41358" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="-" ref_id="SGN-U584197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42099" e_stop="41358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTTCTTCCTTCTTCTCACTCCACTGAAAATATCATTTTCCGATGGTTCAATCCCTAACACTACCGGCCGGAAATACTTTCCGTTTTTCTCTACACAACCTTCCTTCTTCCACAGCCGGTTTCAGATCCGGAGTCACATTTCCCCGAAGGAATAATCGAACAGCAGCGGTATATGCCGCCGCCGTTGCGGAAGCACCGCCGGAATTGCAAAGGAGAACACCGGCGAGTCTCTACGATGTACTAAGGGTAAAATCAAATGCGTCACCCAAAGAGATAAAAACAGCTTACCGGAATTTAGCTAAGCTATACCATCCCGATGCTGCGTCTCTGTCGGAGGAATCTTCCGACGGACGGCATTTCATTGAGATTCACGAAGCTTATGCTACGTTATCAGATCCTGTTTCTAGAGATCTCTATGATCTCAAGCTAAACATGAGCTCCGGCCGACGAGGTTTTGGGAGCTCCGGCGATGGAATTCGTAGGAATGGGTCAGAGTTTTACCCGACCCGAAGGTGGGAAACGGATCAGTGTTGGTGACGTCAGATGATTAGGATTTAGGGGACCCACTTTGCCGCGTTAACACTGTATATATCCTGTAATTTTTTTTCAATGGAATTTAAAAAAAAACAGGTCTTGTTTGAGGATAATGAGTAAAATGTATATTTGTCAATATTATCTCTTATTCATAATAAATTAGGTTAATTCTTTTTAAAAAATGAGTAAGGTGAATTATGATAA</genome_strand>
        <mrna_strand>ACAATTTTCTTCCTTCTTCTCACTCCACTGAAAATATCATTTTCCGATGGTTCAATCCCTAACACTACCGGCCGGAAATACTTTCCGTTTTTCTCTACACAACCTTCCTTCTTCCACAGCCGGTTTCAGATCCGGAGTCACATTTCCCCGAAGGAATAATCGAACAGCAGCGGTATATGCCGCCGCCGTTGCGGAAGCACCGCCGGAATTGCAAAGGAGAACACCGGCGAGTCTCTACGATGTACTAAGGGTAAAATCAAATGCGTCACCCAAAGAGATAAAAACAGCTTACCGGAATTTAGCTAAGCTATACCATCCCGATGCTGCGTCTCTGTCGGAGGAATCTTCCGACGGACGGCATTTCATTGAGATTCACGAAGCTTATGCTACGTTATCAGATCCTGTTTCTAGAGATCTCTATGATCTCAAGCTAAACATGAGCTCCGGCCGACGAGGTTTTGGGAGCTCCGGCGATGGAATTCGTAGGAATGGGTCAGAGTTTTACCCGACCCGAAGGTGGGAAACGGATCAGTGTTGGTGACGTCAGATGATTAGGATTTAGGGGACCCACTTTGCCGCGTTAACACTGTATATATCCTGTAATTTTTTTTCAATGGAATTTAAAAAAAAACAGGTCTTGTTTGAGGATAATGAGTAAAATGTATATTTGTCAATATTATCTCTTATTCATAATAAATTAGGTTAATTCTTTTTAAAAAATGAGTAAGGTGAATTATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U577462" ref_strand="+" ref_description="SGN-U577462 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|23452226|gb|AAN32954.1| (e_value=0) alkaline alpha-galactosidase seed imbibition protein [Lycopersicon esculentum]; (*ATH) AT1G55740.1 (e_value=0)  Symbol: None | alkaline alpha galactosidase, putative, similar to alkaline alpha galactosidase I (Cucumis melo) GI:29838629; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1 | chr1:20839033-20842442 REVERSE | Aliases... ; (*SWP) sp|Q84VX0|Y5740_ARATH (e_value=0) Uncharacterized glycosyltransferase At1g55740 OS=Arabidopsis thaliana GN=At1g55740; ">
      <seq>ggccattatattaacctcccaagcttttcttttctcagctctcaaaatttaattgctatacaagttttgattttgtcattgtatattccttgtgtttttttttttttggttttagaaaagataaagataatattttttttttcatttgggtgttttcttgtttatttggttatagaaagaaaaaagatgacagtaggagcaggaatttgtgtggctgaaagaaagcttaatgtattggggcaaagcattctaagtgatgttgatgaaaatattattgttactcagccaaatggtaaagcttttactaatggggcatttcttggtgttaattcagacagaattggtagtcatagagtcttccctattggcaaactacaaggattgagatttatgtgtggtttccggttcaagttatggtggatgacacagagaatgggtacatctggccaagatataccattcgagactcagtttttgattgtagaaggaaatgatggttcaaattttgatcaagacaaccagcaaaattcagcattgtatgttgttttcttgcctattctagaaggtgattttagggccgttcttcaagggaattcaaacgatgagttagagatatgtttggaaagtggagatcctgctgtgcaagatttcgagggaagccatttggtttacgtagcagctggaccagacccttttgatgtcatcactaatgctgtcaagacggtggagaggcatttacagacattttgtcaccgtgatagaaagaagatgccagacatgttgaactggttcggatggtgcacgtgggatgctttctatactaccgttacttcagagggagtgaagcaagggttagagagtttggagaaaggaggtattcccccaaagtttgtactcattgatgatggatggcaatcagtgagtatggatcccgatggtatcgaatccattgctgataaccatgcaaactttgctaacaggttaactcatatcaaagagaaccataagtttcagaaaaatggaaaagaaggtcatagggttaacgatcctgcaatgggacttcgacatgttgttaccaatatcaaagaccaacacaatttgaagtatgtgtacatgtggcatgcacttgctggttactggggcggtgtgagacccggggtccctgggatggaacactatgaatccaagttatctttcccagtttcatctcccgggactgagtcacaggaacctgatgatgctttgagcagcttgataaagaacggtcttggtctagtgaaccctgagaaagttttatacttctataatgaactgcactcataccttgcttctgcgggtatagatggggttaaagtagatgttcagaacatccttgaaacacttggagctggtcatggtggaagggtaaaactcgcaaggaagtatcatcaagcattagaggcatctattgctcgaaattttcctgataatggaattatttcatgcatgagccatagtaatgatagtttgttcagtgcaaagcgttcagctgtaattagagcatcggatgatttctggccacgagaccctgcatcacacacaattcacatagcatcagtggcgtacaacaccattttccttggtgaattcatgcagcctgattgggatatgtttcacagtgtgcatcccatggctgaataccacggagctgcacgagctgttggaggctgtgctatttacgttagtgacaagcctggacagcacgactttaatcttctgaagaagcttgtacttccagatggttccatattacgcgccaaacttccaggaaggccaactagagactgcttgttttctgatccagcaagagacgggataagtcttttaaaaatctggaatctcaacgatttcaatggagtagtcggtgtattcaactgtcaaggtgctggatggtgtaaggttggcaagaagaatctaatccacgattgtcaaccagggacaataactgggattgttcgtgctaatgatgtcaattacttaccaaggattgctcatgatggatggaccggcgatgccattctgtattctcatcttcatagggaattgatcaatcttcctaaaaatacttcgattccaatcactctaaacgcgagagaatatgaagtctttacagttgttccaatcaatgaaatgtctacaggatcaagatttgctccgattggtcttgtgaatatgttcaattcaggaggagcaatcaaagaggtgaaatatgaaacagagggaaaatgtggactagtttccatgaaggttcgcggatgtggaacgtttggagcttattcatctgggaagcctaaacgaattcatgttgacaacgaagaagtacagtttgattacgacgaatcctctggattgttcaccattaacattacagttcctgatcaagaattatacctttgggatgttaaagttgaaacgtgaaaactgcaagatgaccatgagttgaagacttctcatagtttttaaaatttagacactgttatttaaattttatcgcacaaggacgaaaattctcaatttagtctattgttatcctattagtacttaaaaaatcatattcttttctttatagtaattctacgctatgtatagacttattatttaatgtgtgatctagatacatatattacattggataaacaatgaaactgtactctataacgccacgataactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45988" stop="51392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46288" g_stop="46664" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46665" i_stop="47415" i_length="751">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47416" g_stop="47666" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="628" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47667" i_stop="47759" i_length="93">
            <donor d_prob="0.171" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47760" g_stop="47850" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="719" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47851" i_stop="48272" i_length="422">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48273" g_stop="48321" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="768" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48322" i_stop="48411" i_length="90">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48412" g_stop="48503" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="860" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48504" i_stop="48587" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48588" g_stop="48695" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="968" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48696" i_stop="48779" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48780" g_stop="48914" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="969" r_stop="1103" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48915" i_stop="49000" i_length="86">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49001" g_stop="49411" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1104" r_stop="1514" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="49412" i_stop="49542" i_length="131">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="49543" g_stop="49684" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1515" r_stop="1656" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="49685" i_stop="49777" i_length="93">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="49778" g_stop="49845" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1657" r_stop="1724" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="49846" i_stop="49938" i_length="93">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="49939" g_stop="50073" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1725" r_stop="1859" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="50074" i_stop="50149" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="50150" g_stop="50367" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1860" r_stop="2077" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="50368" i_stop="50458" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="50459" g_stop="51092" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="2078" r_stop="2711" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U577462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46288" e_stop="46664"/>
          <exon e_start="47416" e_stop="47666"/>
          <exon e_start="47760" e_stop="47850"/>
          <exon e_start="48273" e_stop="48321"/>
          <exon e_start="48412" e_stop="48503"/>
          <exon e_start="48588" e_stop="48695"/>
          <exon e_start="48780" e_stop="48914"/>
          <exon e_start="49001" e_stop="49411"/>
          <exon e_start="49543" e_stop="49684"/>
          <exon e_start="49778" e_stop="49845"/>
          <exon e_start="49939" e_stop="50073"/>
          <exon e_start="50150" e_stop="50367"/>
          <exon e_start="50459" e_stop="51092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCATTATATTAACCTCCCAAGCTTTTCTTTTCTCAGCTCTCAAAATTTAATTGCTATACAAGTTTTGATTTTGTCATTGTATATTCCTTGTGTTTTTTTTTTTTTGGTTTTAGAAAAGATAAAGATAATATTTTTTTTTTCATTTGGGTGTTTTCTTGTTTATTTGGTTATAGAAAGAAAAAAGATGACAGTAGGAGCAGGAATTTGTGTGGCTGAAAGAAAGCTTAATGTATTGGGGCAAAGCATTCTAAGTGATGTTGATGAAAATATTATTGTTACTCAGCCAAATGGTAAAGCTTTTACTAATGGGGCATTTCTTGGTGTTAATTCAGACAGAATTGGTAGTCATAGAGTCTTCCCTATTGGCAAACTACAGTATGTTCCTTCTTCATCTTCATAGTTATTTTCTCCGTCTGGTTTTAATTTTTGAATTTTTGTTTATGAATCTAAGGATTCTTTGATGATAATGGCGTTTTATGTTTTAACTTCATTATATGTGTTTTATCTAAATGTTGAGATTGTTTGTTCTTATGTAAAGATTGCATTTTTGTTGTAAAGATTGTTTTTTTGTTGTAAAGATTGCATTTTTATTGTAAAGATTGTTTCTTTGTTGTAAAGATTGCATTTTTGGTTCCTTGATTTTCATGTGAGGTTTTACTAGGAAGTTATTTACTTGTTGAATGCTTGATTATGGTTTGTAGAGGATATTGTGTATTAACTTCATTAAAACTTTCCATGTTCTTAATCTAAGCCAGCGTTTGACCATAGATTTTGAAAGCTTTGTCTTTAAATATATGTCTAGCCATGAATTTTGGTCAGGTTTTGGAAATTTGATCTTCAAATGTTTTCAAGTTCCCAAAATCTACTCCAACCCAGTTTTTGAAACTTCTACTCACAAAACTTCAAAAATTTTCCAAGTAAGATTCATGTCCAAACACAACTTCAAAATTTCAAATTTTCTAGTTACAAGTTTCAACTTTAAAATCTACCAGACCAAATGGGGGCTAAATGTTGAGAATCCTTGGGAATTTTGAAGTACAATTTGCAATTTTTTTGTTGTAATGATTGCTTTGTGATTTGTTTGGTTTTAACAAGGAAATTATTTACGTGTTTGAATGGTTTGCAGAGGATTGAGATTTATGTGTGGTTTCCGGTTCAAGTTATGGTGGATGACACAGAGAATGGGTACATCTGGCCAAGATATACCATTCGAGACTCAGTTTTTGATTGTAGAAGGAAATGATGGTTCAAATTTTGATCAAGACAACCAGCAAAATTCAGCATTGTATGTTGTTTTCTTGCCTATTCTAGAAGGTGATTTTAGGGCCGTTCTTCAAGGGAATTCAAACGATGAGTTAGAGATATGTTTGGAAAGTGGTATGGATATTACGATCTCCATTGATACGTTTTGGATCTTGTCGTATGGTCTTTACCAATTTTCGTGATGCTAATGATGATGGTTGATTGCAGGAGATCCTGCTGTGCAAGATTTCGAGGGAAGCCATTTGGTTTACGTAGCAGCTGGACCAGACCCTTTTGATGTCATCACTAATGCTGTCAAGTATGTTTTAGTCCTTTCTTTCATGGTTTCCATTCTTGAAGAAATTTCCTTAGTCAACTGTGCAACTCATTGTCTTCACATAACTATAGAGTCGTCCCAAGGACAACTATATGGTAATGGGGAAAACGGAGTCCTTTCCGAAAAATGCCTAGAGAAAAAGGAAGATGTATACAACCTTTTGATGATCTAGTGCTATTTCTACTCAACAAAAATATGATTGTCTCGAATATATATGCTATGTTCCTCAATTGTATAACTATTTTGATCTTTAAATGCCTTTCCTGGCCTATTTTCATTGTAATAATCAAATTTTATCTATGTTTTGCTTGAGATTTCATATGTTCCACCAATTTGATAACTGTACCATAGACATTTTGCCTTGCTGAAATGCAAATGATTGTTAAAATTCTTCATCAACACAGGACGGTGGAGAGGCATTTACAGACATTTTGTCACCGTGATAGAAAGAAGGTACATTTTGAATGTCTTCTAATTTCTGCAAGCGCGATTGACATCATTACTTCTGAATATATGTAATATTATGTTTTTATCATGATTCAGATGCCAGACATGTTGAACTGGTTCGGATGGTGCACGTGGGATGCTTTCTATACTACCGTTACTTCAGAGGGAGTGAAGCAAGGGTTAGAGAGGTAATCGACTTCAATTATTTGATAGTGATTAGCTTCTAAATTCCTGCATTGCATAGGGTGCTGAAACTTTTATCTCTTTTTTAGTTTGGAGAAAGGAGGTATTCCCCCAAAGTTTGTACTCATTGATGATGGATGGCAATCAGTGAGTATGGATCCCGATGGTATCGAATCCATTGCTGATAACCATGCAAAGTGAGTAGATGGAACACATTAAATATCATCATCATTGTTTAGCGACCCCTTAAAATGTTCTGATCGTTCTTTGGTTGTTTTCAGCTTTGCTAACAGGTTAACTCATATCAAAGAGAACCATAAGTTTCAGAAAAATGGAAAAGAAGGTCATAGGGTTAACGATCCTGCAATGGGACTTCGACATGTTGTTACCAATATCAAAGACCAACACAATTTGAAGTATGTTCTTCAATATCTTCAACTATCAGGTGCTGTCCTTTTAATTATCAACTAAGCGTTTTCCTTCTTTGGATCATGCACTTTAGGTATGTGTACATGTGGCATGCACTTGCTGGTTACTGGGGCGGTGTGAGACCCGGGGTCCCTGGGATGGAACACTATGAATCCAAGTTATCTTTCCCAGTTTCATCTCCCGGGACTGAGTCACAGGAACCTGATGATGCTTTGAGCAGCTTGATAAAGAACGGTCTTGGTCTAGTGAACCCTGAGAAAGTTTTATACTTCTATAATGAACTGCACTCATACCTTGCTTCTGCGGGTATAGATGGGGTTAAAGTAGATGTTCAGAACATCCTTGAAACACTTGGAGCTGGTCATGGTGGAAGGGTAAAACTCGCAAGGAAGTATCATCAAGCATTAGAGGCATCTATTGCTCGAAATTTTCCTGATAATGGAATTATTTCATGCATGAGCCATAGTAATGATAGTTTGTTCAGGTAATTTTTTCTTGCTTGTAATTGTTATAAACTGAATTAGTTCTAAGAAATGGAGAATCGTCGTAAAGAGATGCTAGATACTCTTACCATATATGTTCTGATCCAGTTTTTATTTCCCTTGCTTTGTGTAGTGCAAAGCGTTCAGCTGTAATTAGAGCATCGGATGATTTCTGGCCACGAGACCCTGCATCACACACAATTCACATAGCATCAGTGGCGTACAACACCATTTTCCTTGGTGAATTCATGCAGCCTGATTGGGATATGTTTCACGTGAGTTGATGATATGAATCTCAGTTTCTTAGTATACTTTCCAACTTATCAAAAAAAAGGTTGAACTCACTAAAATGCTTGTAATATGTTAAGAGTGTGCATCCCATGGCTGAATACCACGGAGCTGCACGAGCTGTTGGAGGCTGTGCTATTTACGTTAGGTACTGCTTATATATACCTTAAGAACAGCTAGTTATTTGGTGTATGATCCGATTTTCATTAATATTTTCTCAATACTGCCTATTTCCATGTAGTGACAAGCCTGGACAGCACGACTTTAATCTTCTGAAGAAGCTTGTACTTCCAGATGGTTCCATATTACGCGCCAAACTTCCAGGAAGGCCAACTAGAGACTGCTTGTTTTCTGATCCAGCAAGAGACGGGATAAGGTAATTGCTTGATCAGATACTTTCACCATCATTTCCAACTGTGATGTATTTTGTAATGTACCTTATGTATATGCAGTCTTTTAAAAATCTGGAATCTCAACGATTTCAATGGAGTAGTCGGTGTATTCAACTGTCAAGGTGCTGGATGGTGTAAGGTTGGCAAGAAGAATCTAATCCACGATTGTCAACCAGGGACAATAACTGGGATTGTTCGTGCTAATGATGTCAATTACTTACCAAGGATTGCTCATGATGGATGGACCGGCGATGCCATTCTGTATTCTCATCTTCATAGTAAGCTGTTTCAATCACTTCTATCATCCTATACTGCATTCTGGTTTAAAAAAAAATACACATTATGCTCACCTGATTGTAACCAATGCAGGGGAATTGATCAATCTTCCTAAAAATACTTCGATTCCAATCACTCTAAACGCGAGAGAATATGAAGTCTTTACAGTTGTTCCAATCAATGAAATGTCTACAGGATCAAGATTTGCTCCGATTGGTCTTGTGAATATGTTCAATTCAGGAGGAGCAATCAAAGAGGTGAAATATGAAACAGAGGGAAAATGTGGACTAGTTTCCATGAAGGTTCGCGGATGTGGAACGTTTGGAGCTTATTCATCTGGGAAGCCTAAACGAATTCATGTTGACAACGAAGAAGTACAGTTTGATTACGACGAATCCTCTGGATTGTTCACCATTAACATTACAGTTCCTGATCAAGAATTATACCTTTGGGATGTTAAAGTTGAAACGTGAAAACTGCAAGATGACCATGAGTTGAAGACTTCTCATAGTTTTTAAAATTTAGACACTGTTATTTAAATTTTATCGCACAAGGACGAAAATTCTCAATTTAGTCTATTGTTATCCTATTAGTACTTAAAAAATCATATTCTTTTCTTTATAGTAATTCTACGCTATGTATAGACTTATTATTTAATGTGTGATCTAGATACATATATTACATTGGATAAACAATGAAACTGTACTCTATAACGCCACGATAACTT</genome_strand>
        <mrna_strand>GGCCATTATATTAACCTCCCAAGCTTTTCTTTTCTCAGCTCTCAAAATTTAATTGCTATACAAGTTTTGATTTTGTCATTGTATATTCCTTGTGTTTTTTTTTTTTTGGTTTTAGAAAAGATAAAGATAATATTTTTTTTTTCATTTGGGTGTTTTCTTGTTTATTTGGTTATAGAAAGAAAAAAGATGACAGTAGGAGCAGGAATTTGTGTGGCTGAAAGAAAGCTTAATGTATTGGGGCAAAGCATTCTAAGTGATGTTGATGAAAATATTATTGTTACTCAGCCAAATGGTAAAGCTTTTACTAATGGGGCATTTCTTGGTGTTAATTCAGACAGAATTGGTAGTCATAGAGTCTTCCCTATTGGCAAACTACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTGAGATTTATGTGTGGTTTCCGGTTCAAGTTATGGTGGATGACACAGAGAATGGGTACATCTGGCCAAGATATACCATTCGAGACTCAGTTTTTGATTGTAGAAGGAAATGATGGTTCAAATTTTGATCAAGACAACCAGCAAAATTCAGCATTGTATGTTGTTTTCTTGCCTATTCTAGAAGGTGATTTTAGGGCCGTTCTTCAAGGGAATTCAAACGATGAGTTAGAGATATGTTTGGAAAGTG.............................................................................................GAGATCCTGCTGTGCAAGATTTCGAGGGAAGCCATTTGGTTTACGTAGCAGCTGGACCAGACCCTTTTGATGTCATCACTAATGCTGTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTGGAGAGGCATTTACAGACATTTTGTCACCGTGATAGAAAGAAG..........................................................................................ATGCCAGACATGTTGAACTGGTTCGGATGGTGCACGTGGGATGCTTTCTATACTACCGTTACTTCAGAGGGAGTGAAGCAAGGGTTAGAGAG....................................................................................TTTGGAGAAAGGAGGTATTCCCCCAAAGTTTGTACTCATTGATGATGGATGGCAATCAGTGAGTATGGATCCCGATGGTATCGAATCCATTGCTGATAACCATGCAAA....................................................................................CTTTGCTAACAGGTTAACTCATATCAAAGAGAACCATAAGTTTCAGAAAAATGGAAAAGAAGGTCATAGGGTTAACGATCCTGCAATGGGACTTCGACATGTTGTTACCAATATCAAAGACCAACACAATTTGAA......................................................................................GTATGTGTACATGTGGCATGCACTTGCTGGTTACTGGGGCGGTGTGAGACCCGGGGTCCCTGGGATGGAACACTATGAATCCAAGTTATCTTTCCCAGTTTCATCTCCCGGGACTGAGTCACAGGAACCTGATGATGCTTTGAGCAGCTTGATAAAGAACGGTCTTGGTCTAGTGAACCCTGAGAAAGTTTTATACTTCTATAATGAACTGCACTCATACCTTGCTTCTGCGGGTATAGATGGGGTTAAAGTAGATGTTCAGAACATCCTTGAAACACTTGGAGCTGGTCATGGTGGAAGGGTAAAACTCGCAAGGAAGTATCATCAAGCATTAGAGGCATCTATTGCTCGAAATTTTCCTGATAATGGAATTATTTCATGCATGAGCCATAGTAATGATAGTTTGTTCAG...................................................................................................................................TGCAAAGCGTTCAGCTGTAATTAGAGCATCGGATGATTTCTGGCCACGAGACCCTGCATCACACACAATTCACATAGCATCAGTGGCGTACAACACCATTTTCCTTGGTGAATTCATGCAGCCTGATTGGGATATGTTTCAC.............................................................................................AGTGTGCATCCCATGGCTGAATACCACGGAGCTGCACGAGCTGTTGGAGGCTGTGCTATTTACGTTAG.............................................................................................TGACAAGCCTGGACAGCACGACTTTAATCTTCTGAAGAAGCTTGTACTTCCAGATGGTTCCATATTACGCGCCAAACTTCCAGGAAGGCCAACTAGAGACTGCTTGTTTTCTGATCCAGCAAGAGACGGGATAAG............................................................................TCTTTTAAAAATCTGGAATCTCAACGATTTCAATGGAGTAGTCGGTGTATTCAACTGTCAAGGTGCTGGATGGTGTAAGGTTGGCAAGAAGAATCTAATCCACGATTGTCAACCAGGGACAATAACTGGGATTGTTCGTGCTAATGATGTCAATTACTTACCAAGGATTGCTCATGATGGATGGACCGGCGATGCCATTCTGTATTCTCATCTTCATA...........................................................................................GGGAATTGATCAATCTTCCTAAAAATACTTCGATTCCAATCACTCTAAACGCGAGAGAATATGAAGTCTTTACAGTTGTTCCAATCAATGAAATGTCTACAGGATCAAGATTTGCTCCGATTGGTCTTGTGAATATGTTCAATTCAGGAGGAGCAATCAAAGAGGTGAAATATGAAACAGAGGGAAAATGTGGACTAGTTTCCATGAAGGTTCGCGGATGTGGAACGTTTGGAGCTTATTCATCTGGGAAGCCTAAACGAATTCATGTTGACAACGAAGAAGTACAGTTTGATTACGACGAATCCTCTGGATTGTTCACCATTAACATTACAGTTCCTGATCAAGAATTATACCTTTGGGATGTTAAAGTTGAAACGTGAAAACTGCAAGATGACCATGAGTTGAAGACTTCTCATAGTTTTTAAAATTTAGACACTGTTATTTAAATTTTATCGCACAAGGACGAAAATTCTCAATTTAGTCTATTGTTATCCTATTAGTACTTAAAAAATCATATTCTTTTCTTTATAGTAATTCTACGCTATGTATAGACTTATTATTTAATGTGTGATCTAGATACATATATTACATTGGATAAACAATGAAACTGTACTCTATAACGCCACGATAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U592208" ref_strand="+" ref_description="SGN-U592208 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|23452226|gb|AAN32954.1| (e_value=2e-32) alkaline alpha-galactosidase seed imbibition protein [Lycopersicon esculentum]; (*ATH) AT1G55740.1 (e_value=8e-18)  Symbol: None | alkaline alpha galactosidase, putative, similar to alkaline alpha galactosidase I (Cucumis melo) GI:29838629; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1 | chr1:20839033-20842442 REVERSE | Aliases... ; (*SWP) sp|Q84VX0|Y5740_ARATH (e_value=7e-17) Uncharacterized glycosyltransferase At1g55740 OS=Arabidopsis thaliana GN=At1g55740; ">
      <seq>tcagctctcaaaattttcacacattttttgaattgctatacaagttttggttttgtcattgtatattccttgtgggttttttttttgttttagaaggataaagataatattttttttttcatttgggtgttttcttgtttatttggttatagaaagaaaaaagatgacagtaggagcaggaatttgtgtggctgaaagaaagcttaatgtattggggcaaagcattctaagtgatgttgatgaaaatattattgttactcagccaaatggtgaagctttcactaatggggcatttcttggtgttaattcagacagaattggtagtcatagggtcttccctattggcaaactacaaggattgagatttatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="46035" stop="47734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46338" g_stop="46664" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="354" r_length="324" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46665" i_stop="47415" i_length="751">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47416" g_stop="47434" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="373" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U592208" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46338" e_stop="46664"/>
          <exon e_start="47416" e_stop="47434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTATACAAGTTTTGATTTTGTCATTGTATATTCCTTGTGTTTTTTTTTTTTTGGTTTTAGAAAAGATAAAGATAATATTTTTTTTTTCATTTGGGTGTTTTCTTGTTTATTTGGTTATAGAAAGAAAAAAGATGACAGTAGGAGCAGGAATTTGTGTGGCTGAAAGAAAGCTTAATGTATTGGGGCAAAGCATTCTAAGTGATGTTGATGAAAATATTATTGTTACTCAGCCAAATGGTAAAGCTTTTACTAATGGGGCATTTCTTGGTGTTAATTCAGACAGAATTGGTAGTCATAGAGTCTTCCCTATTGGCAAACTACAGTATGTTCCTTCTTCATCTTCATAGTTATTTTCTCCGTCTGGTTTTAATTTTTGAATTTTTGTTTATGAATCTAAGGATTCTTTGATGATAATGGCGTTTTATGTTTTAACTTCATTATATGTGTTTTATCTAAATGTTGAGATTGTTTGTTCTTATGTAAAGATTGCATTTTTGTTGTAAAGATTGTTTTTTTGTTGTAAAGATTGCATTTTTATTGTAAAGATTGTTTCTTTGTTGTAAAGATTGCATTTTTGGTTCCTTGATTTTCATGTGAGGTTTTACTAGGAAGTTATTTACTTGTTGAATGCTTGATTATGGTTTGTAGAGGATATTGTGTATTAACTTCATTAAAACTTTCCATGTTCTTAATCTAAGCCAGCGTTTGACCATAGATTTTGAAAGCTTTGTCTTTAAATATATGTCTAGCCATGAATTTTGGTCAGGTTTTGGAAATTTGATCTTCAAATGTTTTCAAGTTCCCAAAATCTACTCCAACCCAGTTTTTGAAACTTCTACTCACAAAACTTCAAAAATTTTCCAAGTAAGATTCATGTCCAAACACAACTTCAAAATTTCAAATTTTCTAGTTACAAGTTTCAACTTTAAAATCTACCAGACCAAATGGGGGCTAAATGTTGAGAATCCTTGGGAATTTTGAAGTACAATTTGCAATTTTTTTGTTGTAATGATTGCTTTGTGATTTGTTTGGTTTTAACAAGGAAATTATTTACGTGTTTGAATGGTTTGCAGAGGATTGAGATTTATGTGT</genome_strand>
        <mrna_strand>AATTGCTATACAAGTTTTGGTTTTGTCATTGTATATTCCTTGTG-GGTTTTTTTTTT-GTTTTAG-AAGGATAAAGATAATATTTTTTTTTTCATTTGGGTGTTTTCTTGTTTATTTGGTTATAGAAAGAAAAAAGATGACAGTAGGAGCAGGAATTTGTGTGGCTGAAAGAAAGCTTAATGTATTGGGGCAAAGCATTCTAAGTGATGTTGATGAAAATATTATTGTTACTCAGCCAAATGGTGAAGCTTTCACTAATGGGGCATTTCTTGGTGTTAATTCAGACAGAATTGGTAGTCATAGGGTCTTCCCTATTGGCAAACTACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTGAGATTTATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U598549" ref_strand="+" ref_description="SGN-U598549 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>atcggccgaattgagagaaaaaaaaaattattatggctgaaaacagggaattgatggaggttaatccgacccgaaagacgaaaatttgggcagcaatagctggaattgcaattgaagccccaattttggggttcatgtgttttagttttctcacttcaattatacttttggtagtaacttctccgttgctagttatatttagtcctctcttaattggggctgctgcggtgctgggagttgctatggcgggatttggggtggccggagttacggcgggtttaggattgtcttcgtttgttttggtgtataggtcggtaattaaaggtagaattaccagcgaaaagtatggcggcggtggtgctgatgaagcgccggttgttgtggataaaatgattgaaccggaggaggagcgtgacaaaaaagtagccggtactggaaataaaacaaatgtgcaggcgcaagagggcaaccctagttcaaaggcagttcatgtaaataaaatagttgagttatttgagtctttaaaggaacatccacatgatcaaaatgaaacagctactattgtccacatagttactgtaaaggttgatgatgatgatgatgatcaacacaaaatcagttctggtgactatttgcagcaaaatgtaccaagacagatcccactagagacttgaatcaatcaagaaaatctatatatgtaggttcagaagtggctagtttatgctttttactgagttgcaggttatgatttgtcttcatttcttagtttttgtggcactgtgtgtatagactttttgtcattttacttcttctctacagtatgaacatatttgttgctgtttttaaaacatgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="50916" stop="52362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51221" g_stop="52062" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="857" r_length="842" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U598549" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51221" e_stop="52062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAAAAATTATTATGGCTGAAAACAGGGAATTGATGGAGGTTAATCCGACCCGAAAGACGAAGATTTGGGCAGCAATAGCTGGAATTGCAATTGAAGCCCCAATTTTGGGGTTCATGTGTTTTAGTTTTCTCACTTCAATTATACTTTTGGTAGTAACTTCTCCGTTGCTAGTTATATTTAGTCCTCTCTTAATTGGTGCTGCTGCGGTGCTGGGAGTTGCTATGGCGGGATTTGGGGTGGCCGGAGTTACGGCGGGTTTAGGATTGTCTTCGTTTGTTTTGGTGTATAGGTCGGTAATTAAAGGTAGAATTACCAGCGGAGAGTATGGCGGCGGTGGTGCTGATGAAGCGCCGGTTGTTGTGGATAAAATGATTGAACCGGAGGAGGAGCGTGACAGAGAAGTAGCCGGTACTGGAGATAAAACAGATGTGCAGGCGCAAGAGGGCAACCCTAGTTCAGAGGCAGTTCATGTAGATAAAATAGTTGAGTTATTTGAGTCTTTAAAGGAACATCCACATGATCAAAATGAAACAGCTACTATTGTCCACATAGTTACTGTAGAGGTTGATGATGATGATGATGATCAACACAAAATCAGTTCTGGTGACTATTTGCAGCAAAATGTACCAAGACAGATCCCACTAGAGACTTGAATCAATCAAGAAAATCTATATATGTAGGTTCAGAAGTGGCTAGTTTATGCTTTTTACTGAGTTGCAGGTTATGATTTGTCTTCATTTCTTAGTTTTTGTGGCACTGTGTGTATAGACTTTTTGTCATTTTACTTCTTCTCTACAGTATGAACATATTTGTTGCTGTTTTTAAAACATGTTTTT</genome_strand>
        <mrna_strand>AGAAAAAAAAAATTATTATGGCTGAAAACAGGGAATTGATGGAGGTTAATCCGACCCGAAAGACGAAAATTTGGGCAGCAATAGCTGGAATTGCAATTGAAGCCCCAATTTTGGGGTTCATGTGTTTTAGTTTTCTCACTTCAATTATACTTTTGGTAGTAACTTCTCCGTTGCTAGTTATATTTAGTCCTCTCTTAATTGGGGCTGCTGCGGTGCTGGGAGTTGCTATGGCGGGATTTGGGGTGGCCGGAGTTACGGCGGGTTTAGGATTGTCTTCGTTTGTTTTGGTGTATAGGTCGGTAATTAAAGGTAGAATTACCAGCGAAAAGTATGGCGGCGGTGGTGCTGATGAAGCGCCGGTTGTTGTGGATAAAATGATTGAACCGGAGGAGGAGCGTGACAAAAAAGTAGCCGGTACTGGAAATAAAACAAATGTGCAGGCGCAAGAGGGCAACCCTAGTTCAAAGGCAGTTCATGTAAATAAAATAGTTGAGTTATTTGAGTCTTTAAAGGAACATCCACATGATCAAAATGAAACAGCTACTATTGTCCACATAGTTACTGTAAAGGTTGATGATGATGATGATGATCAACACAAAATCAGTTCTGGTGACTATTTGCAGCAAAATGTACCAAGACAGATCCCACTAGAGACTTGAATCAATCAAGAAAATCTATATATGTAGGTTCAGAAGTGGCTAGTTTATGCTTTTTACTGAGTTGCAGGTTATGATTTGTCTTCATTTCTTAGTTTTTGTGGCACTGTGTGTATAGACTTTTTGTCATTTTACTTCTTCTCTACAGTATGAACATATTTGTTGCTGTTTTTAAAACATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U600632" ref_strand="+" ref_description="SGN-U600632 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaaaaaataaaaaaaatctactaagaagaacataaaatataaatataatcatgttattgagaactcaagtggctttaagaaattgagatttactgtatcataattgaaacaatgtaaagattatggattattttacatactctagatttttgttgaccttattgtgacattacaggcagtctagtggtcccatggtctagtgattaggacattggatactgaatccagtaacccgagttcaaatctaagtgggacctttagttttgggtctatcagaaacaacctctacccaaaaaagatatgagtaaggtctgcatacatcctaccctctctggaccccactagtgggattacactgagtgtgttgttggtgttacttgacagttccaatcacatcgaccaaatttgtgattttccattgattttaatatctttttgttttcatactagcatccaaaaaaaccaaacattgatttgaacctaagtttggcttgacctgttaggctttgaaaaagacatgcacatggagtctgagaatgtaaatatattatgtacatagtgacgagatccaaaaatgggtaaaagttactggactctatgtttaaatagtcatccccccttgtgagttgtgaaatgtctatctcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="55011" stop="56258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55311" g_stop="55958" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U600632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55311" e_stop="55958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATAAAAAAAATCTACTAAGAAGAACATAAAATATAAATATAATCATGTTATTGAGAACTCAAGTGGCTTTAAGAAATTGAGATTTACTGTATCATAATTGAAACAATGTAAAGATTATGGATTATTTTACATACTCTAGATTTTTGTTGACCTTATTGTGACATTACAGGCAGTCTAGTGGTCCCATGGTCTAGTGATTAGGACATTGGATACTGAATCCAGTAACCCGAGTTCAAATCTAAGTGGGACCTTTAGTTTTGGGTCTATCAGAAACAACCTCTACCCAAAAAAGATATGAGTAAGGTCTGCATACATCCTACCCTCTCTGGACCCCACTAGTGGGATTACACTGAGTGTGTTGTTGGTGTTACTTGACAGTTCCAATCACATCGACCAAATTTGTGATTTTCCATTGATTTTAATATCTTTTTGTTTTCATACTAGCATCCAAAAAAACCAAACATTGATTTGAACCTAAGTTTGGCTTGACCTGTTAGGCTTTGAAAAAGACATGCACATGGAGTCTGAGAATGTAAATATATTATGTACATAGTGACGAGATCCAAAAATGGGTAAAAGTTACTGGACTCTATGTTTAAATAGTCATCCCCCCTTGTGAGTTGTGAAATGTCTATCTCATTG</genome_strand>
        <mrna_strand>GAAAAAATAAAAAAAATCTACTAAGAAGAACATAAAATATAAATATAATCATGTTATTGAGAACTCAAGTGGCTTTAAGAAATTGAGATTTACTGTATCATAATTGAAACAATGTAAAGATTATGGATTATTTTACATACTCTAGATTTTTGTTGACCTTATTGTGACATTACAGGCAGTCTAGTGGTCCCATGGTCTAGTGATTAGGACATTGGATACTGAATCCAGTAACCCGAGTTCAAATCTAAGTGGGACCTTTAGTTTTGGGTCTATCAGAAACAACCTCTACCCAAAAAAGATATGAGTAAGGTCTGCATACATCCTACCCTCTCTGGACCCCACTAGTGGGATTACACTGAGTGTGTTGTTGGTGTTACTTGACAGTTCCAATCACATCGACCAAATTTGTGATTTTCCATTGATTTTAATATCTTTTTGTTTTCATACTAGCATCCAAAAAAACCAAACATTGATTTGAACCTAAGTTTGGCTTGACCTGTTAGGCTTTGAAAAAGACATGCACATGGAGTCTGAGAATGTAAATATATTATGTACATAGTGACGAGATCCAAAAATGGGTAAAAGTTACTGGACTCTATGTTTAAATAGTCATCCCCCCTTGTGAGTTGTGAAATGTCTATCTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571400" ref_strand="+" ref_description="SGN-U571400 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157353282|emb|CAO45205.1| (e_value=4e-86) unnamed; (*ATH) AT5G23810.2 (e_value=7e-72)  Symbol: None | similar to amino acid carrier, putative / amino acid permease, putative [Arabidopsis thaliana] (TAIR:At1g77380.1); similar to putative amino acid transport protein AAP2 [Oryza sativa (japonica cultivar-group)] (GB:AAL87189.1); contain... ; ">
      <seq>gaagaactacagccaaacatttctttatagaggaagttccatcattgttgactaaatttgtgcctaactccaacaaagacattctttccccccatctttttcattatatgatgacttatgagaacttagcactactacatggttcaatatagtatatagtgctgttgttgcgaagggaggagtattgtctttgaacgtttctacttataggtgaaggctttatgtagtatcattgagccacctgcatattttcaaagagttgctttaaggtttttagggtccgtgtctaagaatatatcagtcggatatggaagttcaatgttctcttgaacaagagaaatcttcaggcaaagatgatgcagatacaattagaactggtaagttttaagttgtctcaaaattttctagagggactgagttttataacattgactaggattaaatctaagaaacaatagtcgacgtgtattttcctgccaggaactttgtggactgcagttgcgcacatcatttcagctgtaatcggagctggtgttctatctctagcctggtgtacagcacaattaggatggattgcagggccaatcaccatgctttgttttgcagttgttacatacatatctgcatctctcatatgtgattgttacaggtcacctgatcccataacaggaacgcgaaatccctcttacattgatgccgttagagttaatcttgggaagaaatggacgtggttgtgtggtttgcttcagtatgtgagcttctatgggactggtattgcttatgtaattacaagtgcaacaagtatgagataacattatatccattatagtaatgcctagcctgcaagagacagtgtatgcaattcaagctgaatgagatatgcttctgttaagttattcatccgaccgaaagtttctgcagagaaattcagagatcaaattgttaccataaaggaggagaaaaagctgtttgccagactgggacaaataatttcatgctgatttttggcattattcagatagtaacatcgcagataccaaattttcataacatggcatggttgtctgttgttgctgcgctaatgtcattttgttactctttcatcggattgggccttgggttctctaaagtgatcgataataggggtatcaagggaagcattgtgggagtaccaacaaagagtgctgctcagaagatttggttagttttccaggcactcggagacattgcttttgcctatccttattcgattattcctcctcgagatacagagctcggcttgtttggaactgaggcatagttgtcgccatgtatagttttcccaaaaaaaaaattcaagatcaatatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="55760" stop="58244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56059" g_stop="56772" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56773" i_stop="56907" i_length="135">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56908" g_stop="57001" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="808" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57002" i_stop="57116" i_length="115">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57117" g_stop="57444" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="1136" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57445" i_stop="57599" i_length="155">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57600" g_stop="57733" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1137" r_stop="1271" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57734" i_stop="57865" i_length="132">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.520" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57866" g_stop="57944" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1272" r_stop="1350" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U571400" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1349</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56059" e_stop="56772"/>
          <exon e_start="56908" e_stop="57001"/>
          <exon e_start="57117" e_stop="57444"/>
          <exon e_start="57600" e_stop="57733"/>
          <exon e_start="57866" e_stop="57944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACTACAGCCAAACATTTCTTTATAGAGGAAGTTCCATCATTGTTGACTAAATTTGTGCCTAACTCCAACAAAGACATTCTTTCCCCCCATCTTTTTCATTATATGATGACTTATGAGAACTTAGCACTACTACATGGTTCAATATAGTATATAGTGCTGTTGTTGTGAAGGGAGGAGTATTGTCTTTGAACGTTTCTACTTATAGGTGAAGGCTTTATGTAGTATCATTGAGCCACCTGCATATTTTCAAAGAGTTGCTTTAAGGTTTTTAGGGTCCGTGTCTAAGAATATATCAGTCGGATATGGAAGTTCAATGTTCTCTTGAACAAGAGAAATCTTCAGGCAAAGATGATGCAGATACAATTAGAACTGGTAAGTTTTAAGTTGTCTCAAAATTTTCTAGAGGGACTGAGTTTTATAACATTGACTAGGATTAAATCTAAGAAACAATAGTCGACGTGTATTTTCCTGCCAGGAACTTTGTGGACTGCAGTTGCGCACATCATTTCAGCTGTAATCGGAGCTGGTGTTCTATCTCTAGCCTGGTGTACAGCACAATTAGGATGGATTGCAGGGCCAATCACCATGCTTTGTTTTGCAGTTGTTACATACATATCTGCATCTCTCATATGTGATTGTTACAGGTCACCTGATCCCATAACAGGAACGCGAAATCCCTCTTACATTGATGCCGTTAGAGTTAATCTTGGTAGACTGTTCCATCCTACAACATAGAATTTGTAACTCTTTTAGAAGTTTCTCATATGAGGATTCCTCTTTTACATTATTTTGGGGGGAGGGGATTAGACGCGTCTTTTATGTATTTTGACTTATACTCGTTCAGGGAAGAAATGGACGTGGTTGTGTGGTTTGCTTCAGTATGTGAGCTTCTATGGGACTGGTATTGCTTATGTAATTACAAGTGCAACAAGTATGAGGTTAGTTAGCTATATACATATATATGCAGTTCAGATTTTTGCCTCTCTGAATTCTTAAGTGTCTCGATAGCAGTATCTAAAACATTTTTCTTTGGTCATTTGGTCGGGTTATTAGATAACATTATATCCATTATAGTAATGCCTAGCCTGCAAGAGACAGTGTATGCAATTCAAGCTGAATGAGATATGCTTCTGTTAAGTTATTCATCCGACCGAAAGTTTCTGCAGAGAAATTCAGAGATCAAATTGTTACCATAAAGGAGGAGAAAAAGCTGTTTGCCAGACTGGGACAAATAATTTCATGCTGATTTTTGGCATTATTCAGATAGTAACATCGCAGATACCAAATTTTCATAACATGGCATGGTTGTCTGTTGTTGCTGCGCTAATGTCATTTTGTTACTCTTTCATCGGATTGGGCCTTGGGTTCTCTAAAGTGATCGGTAAAGCCTTGACTGTTCTTTTTCTCATTCTGTTTCTTGTTATTTCATCTCGATTTCCAAAAATATATCAAAGAATCTCGTGTATTTTGATTTTAGTTCTGATCATGGAGCAAGCATTTTCTTGTCTCATTTCCCCATTGATGTTGGATCTGCAGATAATAGGGGTATCAAGGGAAGCATTGTGGGAGTACCAACAAAGAGTGCTGCTCAGAAGATTTGGTTAGTTTTCCAGGCACTCGGAGACATTGCTTTTGCCTATCCTTATTCGATTATT-CTCCTCGAGATACAGGTATTGATATTCCGCAACTATACAAGTCTTAACTTGTGGCATTTCTTAATATATCAATAGTCAGATATAAATAGATTCAGCTCTTAGAATTTGCCCTGATACTCGGTCATTTAATATTGATTTATTTAGCAGAGCTCGGCTTGTTTGGAACTGAGGCATAGTTGTCGTCATGTATAGTTTTCCAAAAAAAATAATTCAAGATCAATATCGG</genome_strand>
        <mrna_strand>GAAGAACTACAGCCAAACATTTCTTTATAGAGGAAGTTCCATCATTGTTGACTAAATTTGTGCCTAACTCCAACAAAGACATTCTTTCCCCCCATCTTTTTCATTATATGATGACTTATGAGAACTTAGCACTACTACATGGTTCAATATAGTATATAGTGCTGTTGTTGCGAAGGGAGGAGTATTGTCTTTGAACGTTTCTACTTATAGGTGAAGGCTTTATGTAGTATCATTGAGCCACCTGCATATTTTCAAAGAGTTGCTTTAAGGTTTTTAGGGTCCGTGTCTAAGAATATATCAGTCGGATATGGAAGTTCAATGTTCTCTTGAACAAGAGAAATCTTCAGGCAAAGATGATGCAGATACAATTAGAACTGGTAAGTTTTAAGTTGTCTCAAAATTTTCTAGAGGGACTGAGTTTTATAACATTGACTAGGATTAAATCTAAGAAACAATAGTCGACGTGTATTTTCCTGCCAGGAACTTTGTGGACTGCAGTTGCGCACATCATTTCAGCTGTAATCGGAGCTGGTGTTCTATCTCTAGCCTGGTGTACAGCACAATTAGGATGGATTGCAGGGCCAATCACCATGCTTTGTTTTGCAGTTGTTACATACATATCTGCATCTCTCATATGTGATTGTTACAGGTCACCTGATCCCATAACAGGAACGCGAAATCCCTCTTACATTGATGCCGTTAGAGTTAATCTTG.......................................................................................................................................GGAAGAAATGGACGTGGTTGTGTGGTTTGCTTCAGTATGTGAGCTTCTATGGGACTGGTATTGCTTATGTAATTACAAGTGCAACAAGTATGAG...................................................................................................................ATAACATTATATCCATTATAGTAATGCCTAGCCTGCAAGAGACAGTGTATGCAATTCAAGCTGAATGAGATATGCTTCTGTTAAGTTATTCATCCGACCGAAAGTTTCTGCAGAGAAATTCAGAGATCAAATTGTTACCATAAAGGAGGAGAAAAAGCTGTTTGCCAGACTGGGACAAATAATTTCATGCTGATTTTTGGCATTATTCAGATAGTAACATCGCAGATACCAAATTTTCATAACATGGCATGGTTGTCTGTTGTTGCTGCGCTAATGTCATTTTGTTACTCTTTCATCGGATTGGGCCTTGGGTTCTCTAAAGTGATCG...........................................................................................................................................................ATAATAGGGGTATCAAGGGAAGCATTGTGGGAGTACCAACAAAGAGTGCTGCTCAGAAGATTTGGTTAGTTTTCCAGGCACTCGGAGACATTGCTTTTGCCTATCCTTATTCGATTATTCCTCCTCGAGATACAG....................................................................................................................................AGCTCGGCTTGTTTGGAACTGAGGCATAGTTGTCGCCATGTATAGTTTTCCCAAAAAAAAAATTCAAGATCAATATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571401" ref_strand="+" ref_description="SGN-U571401 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157353282|emb|CAO45205.1| (e_value=3e-66) unnamed; (*ATH) AT1G77380.1 (e_value=2e-51)  Symbol: None | amino acid carrier, putative / amino acid permease, putative, strong similarity to amino acid carrier GI:3293031 from (Ricinus communis); contains Pfam profile PF01490: Transmembrane amino acid transporter protein; identical to cDNA A... ; ">
      <seq>agaggaagttccatcattgttgactaaatttgtgcctaactccaacaaagacattctttccccccatctttttcattatatgatgacttatgagaacttagcactactacatggttcaatatagtatatagtgctgttgttgtgaagggaggagtattgtctttgaacgtttctacttataggtgaaggctttatgtagtatcattgagccacctgcatattttcaaagagttgctttaaggtttttagggtccgtgtctaagaatatatcagtcggatatggaagttcaatgttctcttgaacaagagaaatcttcaggcaaagatgatgcagatacaattagaactggaactttgtggactgcagttgcgcacatcatttcagctgtaatcggagctggtgttctatctctagcctggtgtacagcacaattaggatggattgcagggccaatcaccatgctttgttttgcagttgttacatacatatctgcatctctcatatgtgattgttacaggtcacctgatcccataacaggaacgcgaaatccctcttacattgatgccgttagagttaatcttgggaagaaatggacgtggttgtgtggtttgcttcagtatgtgagcttctatgggactggtattgcttatgtaattacaagtgcaacaagtatgagagaaattcagagatcaaattgttaccataaaggaggagaaaaagctgtttgccagactgggacaaataatttcatgctgatttttggcattattcagatagtaacatcgcagataccaaattttcataacatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="55787" stop="57665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56087" g_stop="56435" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56436" i_stop="56538" i_length="103">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56539" g_stop="56772" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="583" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56773" i_stop="56907" i_length="135">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56908" g_stop="57001" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="677" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57002" i_stop="57229" i_length="228">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57230" g_stop="57365" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="813" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U571401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56087" e_stop="56435"/>
          <exon e_start="56539" e_stop="56772"/>
          <exon e_start="56908" e_stop="57001"/>
          <exon e_start="57230" e_stop="57365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAGTTCCATCATTGTTGACTAAATTTGTGCCTAACTCCAACAAAGACATTCTTTCCCCCCATCTTTTTCATTATATGATGACTTATGAGAACTTAGCACTACTACATGGTTCAATATAGTATATAGTGCTGTTGTTGTGAAGGGAGGAGTATTGTCTTTGAACGTTTCTACTTATAGGTGAAGGCTTTATGTAGTATCATTGAGCCACCTGCATATTTTCAAAGAGTTGCTTTAAGGTTTTTAGGGTCCGTGTCTAAGAATATATCAGTCGGATATGGAAGTTCAATGTTCTCTTGAACAAGAGAAATCTTCAGGCAAAGATGATGCAGATACAATTAGAACTGGTAAGTTTTAAGTTGTCTCAAAATTTTCTAGAGGGACTGAGTTTTATAACATTGACTAGGATTAAATCTAAGAAACAATAGTCGACGTGTATTTTCCTGCCAGGAACTTTGTGGACTGCAGTTGCGCACATCATTTCAGCTGTAATCGGAGCTGGTGTTCTATCTCTAGCCTGGTGTACAGCACAATTAGGATGGATTGCAGGGCCAATCACCATGCTTTGTTTTGCAGTTGTTACATACATATCTGCATCTCTCATATGTGATTGTTACAGGTCACCTGATCCCATAACAGGAACGCGAAATCCCTCTTACATTGATGCCGTTAGAGTTAATCTTGGTAGACTGTTCCATCCTACAACATAGAATTTGTAACTCTTTTAGAAGTTTCTCATATGAGGATTCCTCTTTTACATTATTTTGGGGGGAGGGGATTAGACGCGTCTTTTATGTATTTTGACTTATACTCGTTCAGGGAAGAAATGGACGTGGTTGTGTGGTTTGCTTCAGTATGTGAGCTTCTATGGGACTGGTATTGCTTATGTAATTACAAGTGCAACAAGTATGAGGTTAGTTAGCTATATACATATATATGCAGTTCAGATTTTTGCCTCTCTGAATTCTTAAGTGTCTCGATAGCAGTATCTAAAACATTTTTCTTTGGTCATTTGGTCGGGTTATTAGATAACATTATATCCATTATAGTAATGCCTAGCCTGCAAGAGACAGTGTATGCAATTCAAGCTGAATGAGATATGCTTCTGTTAAGTTATTCATCCGACCGAAAGTTTCTGCAGAGAAATTCAGAGATCAAATTGTTACCATAAAGGAGGAGAAAAAGCTGTTTGCCAGACTGGGACAAATAATTTCATGCTGATTTTTGGCATTATTCAGATAGTAACATCGCAGATACCAAATTTTCATAACATGGCA</genome_strand>
        <mrna_strand>AGAGGAAGTTCCATCATTGTTGACTAAATTTGTGCCTAACTCCAACAAAGACATTCTTTCCCCCCATCTTTTTCATTATATGATGACTTATGAGAACTTAGCACTACTACATGGTTCAATATAGTATATAGTGCTGTTGTTGTGAAGGGAGGAGTATTGTCTTTGAACGTTTCTACTTATAGGTGAAGGCTTTATGTAGTATCATTGAGCCACCTGCATATTTTCAAAGAGTTGCTTTAAGGTTTTTAGGGTCCGTGTCTAAGAATATATCAGTCGGATATGGAAGTTCAATGTTCTCTTGAACAAGAGAAATCTTCAGGCAAAGATGATGCAGATACAATTAGAACTG.......................................................................................................GAACTTTGTGGACTGCAGTTGCGCACATCATTTCAGCTGTAATCGGAGCTGGTGTTCTATCTCTAGCCTGGTGTACAGCACAATTAGGATGGATTGCAGGGCCAATCACCATGCTTTGTTTTGCAGTTGTTACATACATATCTGCATCTCTCATATGTGATTGTTACAGGTCACCTGATCCCATAACAGGAACGCGAAATCCCTCTTACATTGATGCCGTTAGAGTTAATCTTG.......................................................................................................................................GGAAGAAATGGACGTGGTTGTGTGGTTTGCTTCAGTATGTGAGCTTCTATGGGACTGGTATTGCTTATGTAATTACAAGTGCAACAAGTATGAG....................................................................................................................................................................................................................................AGAAATTCAGAGATCAAATTGTTACCATAAAGGAGGAGAAAAAGCTGTTTGCCAGACTGGGACAAATAATTTCATGCTGATTTTTGGCATTATTCAGATAGTAACATCGCAGATACCAAATTTTCATAACATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571399" ref_strand="+" ref_description="SGN-U571399 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157353281|emb|CAO45204.1| (e_value=7e-27) unnamed; (*ATH) AT5G23810.2 (e_value=3e-27)  Symbol: None | similar to amino acid carrier, putative / amino acid permease, putative [Arabidopsis thaliana] (TAIR:At1g77380.1); similar to putative amino acid transport protein AAP2 [Oryza sativa (japonica cultivar-group)] (GB:AAL87189.1); contain... ; ">
      <seq>ggtagactgttccatcctacaacatagaatttgtaactcttttagaagtttctcatatgaggattcctcttttacattattttggggggaggggattagacgcgtcttttatgtattttgacttatactcgttcagggaagaaatggacgtggttgtgtggtttgcttcagtatgtgagcttctatgggactggtattgcttatgtaattacaagtgcaacaagtatgaggttagttagctatatacatatatatgcagttcagatttttgcctctctgaattcttaagtgtctcgatagcagtatctaaaacatttttctttggtcatttggtcgggttattagataacattatatccattatagtaatgcctagcctgcaagagacagtgtatgcaattcaagctgaatgagatatgcttctgttaagttattcatccgaccgaaagtttctgcagagaaattcagagatcaaattgttaccataaaggaggagaaaaagctgtttgccagactgggacaaataatttcatgctgatttttggcattattcagatagtaacatcgcagataccaaattttcataacatggcatggttgtctgttgttgctgcgctaatgtcattttgttactctttcatcggattgggccttgggttctctaaagtgatcgataataggggtatcaagggaagcattgtgggagtaccaacaaagagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="56472" stop="57950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56772" g_stop="57444" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57445" i_stop="57599" i_length="155">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57600" g_stop="57650" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="724" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U571399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56772" e_stop="57444"/>
          <exon e_start="57600" e_stop="57650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGACTGTTCCATCCTACAACATAGAATTTGTAACTCTTTTAGAAGTTTCTCATATGAGGATTCCTCTTTTACATTATTTTGGGGGGAGGGGATTAGACGCGTCTTTTATGTATTTTGACTTATACTCGTTCAGGGAAGAAATGGACGTGGTTGTGTGGTTTGCTTCAGTATGTGAGCTTCTATGGGACTGGTATTGCTTATGTAATTACAAGTGCAACAAGTATGAGGTTAGTTAGCTATATACATATATATGCAGTTCAGATTTTTGCCTCTCTGAATTCTTAAGTGTCTCGATAGCAGTATCTAAAACATTTTTCTTTGGTCATTTGGTCGGGTTATTAGATAACATTATATCCATTATAGTAATGCCTAGCCTGCAAGAGACAGTGTATGCAATTCAAGCTGAATGAGATATGCTTCTGTTAAGTTATTCATCCGACCGAAAGTTTCTGCAGAGAAATTCAGAGATCAAATTGTTACCATAAAGGAGGAGAAAAAGCTGTTTGCCAGACTGGGACAAATAATTTCATGCTGATTTTTGGCATTATTCAGATAGTAACATCGCAGATACCAAATTTTCATAACATGGCATGGTTGTCTGTTGTTGCTGCGCTAATGTCATTTTGTTACTCTTTCATCGGATTGGGCCTTGGGTTCTCTAAAGTGATCGGTAAAGCCTTGACTGTTCTTTTTCTCATTCTGTTTCTTGTTATTTCATCTCGATTTCCAAAAATATATCAAAGAATCTCGTGTATTTTGATTTTAGTTCTGATCATGGAGCAAGCATTTTCTTGTCTCATTTCCCCATTGATGTTGGATCTGCAGATAATAGGGGTATCAAGGGAAGCATTGTGGGAGTACCAACAAAGAGTGCTG</genome_strand>
        <mrna_strand>GGTAGACTGTTCCATCCTACAACATAGAATTTGTAACTCTTTTAGAAGTTTCTCATATGAGGATTCCTCTTTTACATTATTTTGGGGGGAGGGGATTAGACGCGTCTTTTATGTATTTTGACTTATACTCGTTCAGGGAAGAAATGGACGTGGTTGTGTGGTTTGCTTCAGTATGTGAGCTTCTATGGGACTGGTATTGCTTATGTAATTACAAGTGCAACAAGTATGAGGTTAGTTAGCTATATACATATATATGCAGTTCAGATTTTTGCCTCTCTGAATTCTTAAGTGTCTCGATAGCAGTATCTAAAACATTTTTCTTTGGTCATTTGGTCGGGTTATTAGATAACATTATATCCATTATAGTAATGCCTAGCCTGCAAGAGACAGTGTATGCAATTCAAGCTGAATGAGATATGCTTCTGTTAAGTTATTCATCCGACCGAAAGTTTCTGCAGAGAAATTCAGAGATCAAATTGTTACCATAAAGGAGGAGAAAAAGCTGTTTGCCAGACTGGGACAAATAATTTCATGCTGATTTTTGGCATTATTCAGATAGTAACATCGCAGATACCAAATTTTCATAACATGGCATGGTTGTCTGTTGTTGCTGCGCTAATGTCATTTTGTTACTCTTTCATCGGATTGGGCCTTGGGTTCTCTAAAGTGATCG...........................................................................................................................................................ATAATAGGGGTATCAAGGGAAGCATTGTGGGAGTACCAACAAAGAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U565139" ref_strand="+" ref_description="SGN-U565139 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157353282|emb|CAO45205.1| (e_value=2e-91) unnamed; (*ATH) AT5G23810.1 (e_value=8e-79)  Symbol: None | amino acid transporter family protein, similar to amino acid carrier (Ricinus communis) GI:3293031; contains Pfam profile PF01490: Transmembrane amino acid transporter protein | chr5:8028381-8030817 FORWARD | Aliases: MRO11.15, MRO11_... ; ">
      <seq>attatcttcctcgagatacaggatacactaaaatctcctcccccagaaaatcagaccatgaagaaggcgtcaataaatgcgatagttatcaccactttcttctatctatgctgtagttgcttcggatatgcagcctttgggaacgacacaccagggaacctcttgacaggtttctacgagccgttttggcttgttgattttgccaatgcctgcatagtcctccatctggttggagggtatcaggtatacagccagccagtattcgcatttgttgaaaaatgggcaactcagaagtaccctcagaacagattcataaataatttctacgccatcaaactcccagtgttgccagctctccagttgaacctcttccggttatgttttcgaactctatatgttatatctacaacagcaatagcaatggcatttccatatttcaaccaggtattaggaatcttgggagcattgaacttttggcctatgaccatatattttccagtggaaatgtacattgtgcaaagaaaaattggagcttggacaagaaaatggatacttcttgaaggtttcagtatggtttgtttgattgtatctttactggggttgattggatcaattgagggaatagttaaagctaaattagcttgaaatgtaaaatcttacaattaaatagctagctagtaagatttgtaagccaaaagacactctattcatgccattcttctaatggaatttacacatctcattcagtaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="57780" stop="59218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58097" g_stop="58318" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="243" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58319" i_stop="58409" i_length="91">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58410" g_stop="58919" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="753" r_length="510" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U565139" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58097" e_stop="58318"/>
          <exon e_start="58410" e_stop="58919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACACTAAAATCTCCTCCACCAGAAAATCAGACCATGAAGAAGGCGTCAATAAATGCGATAGTTATCACCACTTTCTTCTATCTATGCTGTAGTTGCTTCGGATATGCAGCCTTTGGGAACGACACACCAGGGAACCTCTTGACAGGTTTCTACGAGCCGTTTTGGCTTGTTGATTTTGCCAATGCCTGCATAGTCCTCCATCTGGTTGGAGGGTATCAGGTAGTACTAAAACCCGAGTCTTTTCCTTCCACCCTTTACTTGGTATACGACAATTCTAACCTTAACACGAACAAAATGCTTGTTTCCTTAGGTATACAGCCAGCCAGTATTCGCATTTGTTGAAAAATGGGCAACTCAGAAGTACCCTCAGAACAGATTCATAAATAATTTCTACGCCATCAAACTCCCAGTGTTGCCAGCTCTCCAGTTGAACCTCTTCCGGTTATGTTTTCGAACTCTATATGTTATATCTACAACAGCAATAGCAATGGCATTTCCATATTTCAACCAGGTATTAGGAATCTTGGGAGCATTGAACTTTTGGCCTATGACCATATATTTTCCAGTGGAAATGTACATTGTGCAAAGAAAAATTGGAGCTTGGACAAGAAAATGGATACTTCTTGAAGGTTTCAGTATGGTTTGTTTGATTGTATCTTTACTGGGGTTGATTGGATCAATTGAGGGAATAGTTAAAGCTAAATTAGCTTGAAATGTAAAATCTTACAATTAAATAGCTAGCTAGTAAGATTTGTAAGCCAAAAGACACTCTATTCATGCCATTCTTCTAATGGAATTTACACATCTCATTCAGTAACTT</genome_strand>
        <mrna_strand>GATACACTAAAATCTCCTCCCCCAGAAAATCAGACCATGAAGAAGGCGTCAATAAATGCGATAGTTATCACCACTTTCTTCTATCTATGCTGTAGTTGCTTCGGATATGCAGCCTTTGGGAACGACACACCAGGGAACCTCTTGACAGGTTTCTACGAGCCGTTTTGGCTTGTTGATTTTGCCAATGCCTGCATAGTCCTCCATCTGGTTGGAGGGTATCAG...........................................................................................GTATACAGCCAGCCAGTATTCGCATTTGTTGAAAAATGGGCAACTCAGAAGTACCCTCAGAACAGATTCATAAATAATTTCTACGCCATCAAACTCCCAGTGTTGCCAGCTCTCCAGTTGAACCTCTTCCGGTTATGTTTTCGAACTCTATATGTTATATCTACAACAGCAATAGCAATGGCATTTCCATATTTCAACCAGGTATTAGGAATCTTGGGAGCATTGAACTTTTGGCCTATGACCATATATTTTCCAGTGGAAATGTACATTGTGCAAAGAAAAATTGGAGCTTGGACAAGAAAATGGATACTTCTTGAAGGTTTCAGTATGGTTTGTTTGATTGTATCTTTACTGGGGTTGATTGGATCAATTGAGGGAATAGTTAAAGCTAAATTAGCTTGAAATGTAAAATCTTACAATTAAATAGCTAGCTAGTAAGATTTGTAAGCCAAAAGACACTCTATTCATGCCATTCTTCTAATGGAATTTACACATCTCATTCAGTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U569531" ref_strand="+" ref_description="SGN-U569531 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157353282|emb|CAO45205.1| (e_value=5e-86) unnamed; (*ATH) AT5G23810.2 (e_value=2e-80)  Symbol: None | similar to amino acid carrier, putative / amino acid permease, putative [Arabidopsis thaliana] (TAIR:At1g77380.1); similar to putative amino acid transport protein AAP2 [Oryza sativa (japonica cultivar-group)] (GB:AAL87189.1); contain... ; ">
      <seq>tgaagaaagtgactctcaaatgccatttttggacccaaattatgtttcttcttcttcttcccaatcatctaagcttgccctcaaaagaacaggaaatgaatggacagctttggcacatttaattacagcagtaattggttctggtgttctatcattagcatggagcatggcacagctaggttgggttgctggtccattgactatgctcgtatttgcttgtgtctctcttacttctgtatttcttctctgcaattgctataagtctcctgatccagaaactggccctgataggaatggctgttatcttgatgctgtacagaagattttaggaaaaagaaatgcctggttttgtggaatcgctgttcgtataaatttcatcaagcttgcaattatatatacaattacatccgcctccagcatacaagctatccagaaatcaaactgctatcatgatcaaggtcacaaggctacctgtggatatgaaagtactaggtatatggtaatatttggattaatccaagttatagtgtctcaaattcctgattttccgaatatgaagtggctctccgtagttgctgctgtcatgtccttcacatattcaattatcggatcagcacttggcttagccaaagtaatagaaaatggagaaatcaaaggaagcattacaggactgccaagttctacagctgctgagaaagtatggttggttgctcaagcgctcgggaacattgcctttgcctttccattctctcttatatttctggaggttcaggacacattaaaggcacctcctccagaaaagatcaccatgaagaaggtctcaattatgacatcctgtattacaacttttttctacctttgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="59674" stop="63185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59974" g_stop="60065" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60066" i_stop="60549" i_length="484">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.422" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60550" g_stop="60786" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="329" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60787" i_stop="61152" i_length="366">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61153" g_stop="61246" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="423" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61247" i_stop="62216" i_length="970">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62217" g_stop="62431" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="638" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62432" i_stop="62569" i_length="138">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62570" g_stop="62703" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="772" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62704" i_stop="62792" i_length="89">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62793" g_stop="62885" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="865" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U569531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59974" e_stop="60065"/>
          <exon e_start="60550" e_stop="60786"/>
          <exon e_start="61153" e_stop="61246"/>
          <exon e_start="62217" e_stop="62431"/>
          <exon e_start="62570" e_stop="62703"/>
          <exon e_start="62793" e_stop="62885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAAGTGACTCTCAAATGCCATTTTTGGACCCAAATTATGTTTCTTCTTCTTCTTCCCAATCATCTAAGCTTGCCCTCAAAAGAACAGGTAACAAAAATTCCCTTTTTATTTTACTTCAATTATATTTTTCCCAATATACTATAAGGTCAAAATATTTGTTTTTGGTATCATACTTCACTTTTTCCTTTTTTCTGGAAACCCCTTTTTATCTCCATTTGACCATTTAAGCTTCATTTTACACAAAAAGTTTGGATCTTGACAATAAAAAATTGGGTCCATAGTGAACCCATCTCAAGAATCTTGATGAGATGAAACTTTTCGTTCCATAACAATGAATTTGACAATACAAAGCAATAGAGTAAATTTAAGTAACAATCAAAAAACAAATAATGTATTTAAAGTAACAATAGATAAACCATCCAAACAAGCTGTAAAAAGGGTTAATCATCTTGATCTTTTCTTGTGTTAATTTAGTAGTATTAGTTTCTAATAGTTTCTTTCAATAATTGAAACCTGTACAAGTTGATGATACTCACAGAAGCTAATATGTGTACTCACCGTGAAAATTCAGGAAATGAATGGACAGCTTTGGCACATTTAATTACAGCAGTAATTGGTTCTGGTGTTCTATCATTAGCATGGAGCATGGCACAGCTAGGTTGGGTTGCTGGTCCATTGACTATGCTCGTATTTGCTTGTGTCTCTCTTACTTCTGTATTTCTTCTCTGCAATTGCTATAAGTCTCCTGATCCAGAAACTGGCCCTGATAGGAATGGCTGTTATCTTGATGCTGTACAGAAGATTTTAGGTGAGAATTCAAGCTAAGAATAAATTAGAAAAAATCCTATGTCCTGCACTTTTTCAGTTCAGATGAACCATTTATTTACTTCTCGTTTTCCTTACTTTTCGTGGAAATAAATTATGTTCAAGTAAGCAAGCACGTCGTTCTTCCAGGAGTCTATATATAGATTTTAAGGACATGGTGGCCTAACCATCGTAAAACTTTAGTTTTCTCTTAATTGGAGGACCAACTGGATAGTTCATGGGATGCCAAAATTAACTGTCCTTATGTAGAACTTGACTTGGCAGCAAGGGTCTTCTTACCTTACTGAATTCAAGAGGGCTGTTATATACTTGGGCTTACGCAACAAATTCCTTTTTTCTGGCATCTCAGGAAAAAGAAATGCCTGGTTTTGTGGAATCGCTGTTCGTATAAATTTCATCAAGCTTGCAATTATATATACAATTACATCCGCCTCCAGCATACAGTATGTCATTGATCTTCTCTCTACTAGTATTATCAATGTCTCCTTCTGACAATTTATGCACGTACATTTCCTTTATGAGCTTTGCTGCTTATCATACTGAATTTTTGTTTGGGTTATCCTAGTTTACATGGTTGCATTTCCATACTATCAGACAACTTAATTTCCTCTTGCCAAATTCATGCTTCAGACCTATTATCTCCTCTAAAGTCCAGTGGCGGAGCCAAGAGTTTGGGAAAGAGTATGCAGATTTTCTTCTCAGTTGTGTTAAGGGTGTGCAAAATCAAACATACACTCATAATATCTCACAGTTAACATTTAACCTTTGTACACCACATAATATTTCAGCGAAGGGTGTGCACGGGACCATCCTTAGCCTAAGGTGGCCCAGCCAATGCTCTAAACTAATGAGGTTTTTATTTTACACTATCTTCTGAGATTCCTTTGACTGCTAACAGTTCATAAATAAACTTGTTAAGGATTCTTAAGGGTTCAAGAATTACCAAACAATATAGTCCGAACCGTACGAATCTAGCTATAAGCAGAGATTTGTATCCATGTCATCATTCTAATCAGATAACTAGAGGGGGATACAGAAGTATATGTCATAATTAGTGAAATTAGGATAGGTGTTCCATTATCAAGGAGATAAAAGTTCCATAACCAATGGGATTAGGAATATTAAAAAGGATACACAGTACTTAGTGTACATATAAAGTTGATATTGCTATCATATATTCTCAAAATTAAACTTACATTCGATGTATATTAGTGGATTAAGGGAATGTGTCCCTAAATGATTTTAGGAGTCCCATATAACCAATGAAATAAAGAATCATAGATAATAAGGCTATAATGCATAGCACATATACATAAGAATTGAGAGTTGTTACTCCTGTGCATTCTCAAACTATCTATTGGGAGGGTTTTTTCTAAAGCTGATATTAATAATGCATCCTCTAAATGCTTCCAGAGCTATCCAGAAATCAAACTGCTATCATGATCAAGGTCACAAGGCTACCTGTGGATATGAAAGTACTAGGTATATGGTAATATTTGGATTAATCCAAGTTATAGTGTCTCAAATTCCTGATTTTCCGAATATGAAGTGGCTCTCCGTAGTTGCTGCTGTCATGTCCTTCACATATTCAATTATCGGATCAGCACTTGGCTTAGCCAAAGTAATAGGTAGGTTACCTTTTTGCATGCTTTTAGAGTCCTAAAATCTTCACAATAACAAGCATGTTCAGGCCTAGAATCTCAGGTAATATAGATGATCAAACTTGTCATTATCTTAAAATTCCATTCCGCAATCTTGATATGCAGAAAATGGAGAAATCAAAGGAAGCATTACAGGACTGCCAAGTTCTACAGCTGCTGAGAAAGTATGGTTGGTTGCTCAAGCGCTCGGGAACATTGCCTTTGCCTTTCCATTCTCTCTTATATTTCTGGAGGTTCAGGTGCTGCAATTTGGCTTTCTAAATTAAATAATTTTCTTAATCAGCATTAAGCTGCACTAAACAATTAATGAAAACTTCCAAATATGTAGGACACATTAAAGGCACCTCCTCCAGAAAAGATCACCATGAAGAAGGTCTCAATTATGACATCCTGTATTACAACTTTTTTCTACCTTTGCTGT</genome_strand>
        <mrna_strand>TGAAGAAAGTGACTCTCAAATGCCATTTTTGGACCCAAATTATGTTTCTTCTTCTTCTTCCCAATCATCTAAGCTTGCCCTCAAAAGAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGAATGGACAGCTTTGGCACATTTAATTACAGCAGTAATTGGTTCTGGTGTTCTATCATTAGCATGGAGCATGGCACAGCTAGGTTGGGTTGCTGGTCCATTGACTATGCTCGTATTTGCTTGTGTCTCTCTTACTTCTGTATTTCTTCTCTGCAATTGCTATAAGTCTCCTGATCCAGAAACTGGCCCTGATAGGAATGGCTGTTATCTTGATGCTGTACAGAAGATTTTAG..............................................................................................................................................................................................................................................................................................................................................................................GAAAAAGAAATGCCTGGTTTTGTGGAATCGCTGTTCGTATAAATTTCATCAAGCTTGCAATTATATATACAATTACATCCGCCTCCAGCATACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATCCAGAAATCAAACTGCTATCATGATCAAGGTCACAAGGCTACCTGTGGATATGAAAGTACTAGGTATATGGTAATATTTGGATTAATCCAAGTTATAGTGTCTCAAATTCCTGATTTTCCGAATATGAAGTGGCTCTCCGTAGTTGCTGCTGTCATGTCCTTCACATATTCAATTATCGGATCAGCACTTGGCTTAGCCAAAGTAATAG..........................................................................................................................................AAAATGGAGAAATCAAAGGAAGCATTACAGGACTGCCAAGTTCTACAGCTGCTGAGAAAGTATGGTTGGTTGCTCAAGCGCTCGGGAACATTGCCTTTGCCTTTCCATTCTCTCTTATATTTCTGGAGGTTCAG.........................................................................................GACACATTAAAGGCACCTCCTCCAGAAAAGATCACCATGAAGAAGGTCTCAATTATGACATCCTGTATTACAACTTTTTTCTACCTTTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U574803" ref_strand="+" ref_description="SGN-U574803 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gaactcagaaaagaattgaaagttggaaaagcaaagctatcatgcttcgcgtctttacaatggtatgtctggttgtgatattgtacgcatttgttgggtctatcagaggagttattgttgctaggttcaggtaaaaatgcttcttcacgtttctacaaggtttgcgtacatgctatcctctccgaacccccacttgtgagattatactagatatgttatttaaaaaagaaatgtaaataaattctttatagttttaaaatgttcggtatgtaaacaatgccttacgttgtcaacaaccaaatatgtattataaaatttcatcgattttcgtgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="+" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="63626" stop="64560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63925" g_stop="64260" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="+" ref_id="SGN-U574803" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63925" e_stop="64260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCAGAAAAGAATTGAAAGTTGGAAAAGCAAAGCTATCATGCTTCGCGTCTTTACAATGGTATGTCTGGTTGTGATATTGTACGCATTTGTTGGGTCTATCAGAGGAGTTATTGTTGCTAGGTTCAGGTAAAAATGCTTCTTCACGTTTCTACAAGGTTTGCGTACATGCTATCCTCTCCGAACCCCCACTTGTGAGATTATACTAGATATGTTATTTAAAAAAGAAATGTAAATAAATTCTTTATAGTTTTAAAATGTTCGGTATGTAAACAATGCCTTACGTTGTCAACAACCAAATATGTATTATAAAATTTCATCGATTTTCGTGTACT</genome_strand>
        <mrna_strand>GAACTCAGAAAAGAATTGAAAGTTGGAAAAGCAAAGCTATCATGCTTCGCGTCTTTACAATGGTATGTCTGGTTGTGATATTGTACGCATTTGTTGGGTCTATCAGAGGAGTTATTGTTGCTAGGTTCAGGTAAAAATGCTTCTTCACGTTTCTACAAGGTTTGCGTACATGCTATCCTCTCCGAACCCCCACTTGTGAGATTATACTAGATATGTTATTTAAAAAAGAAATGTAAATAAATTCTTTATAGTTTTAAAATGTTCGGTATGTAAACAATGCCTTACGTTGTCAACAACCAAATATGTATTATAAAATTTCATCGATTTTCGTGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U576669" ref_strand="+" ref_description="SGN-U576669 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|30682618|ref|NP_187941.2| (e_value=0) expressed protein [Arabidopsis thaliana]; (*ATH) AT3G13330.1 (e_value=0) | Symbol: None | expressed protein | chr3:4319654-4330068 REVERSE | Aliases: MDC11.16; (*SWP) sp|Q6NRP2|PSME4_XENLA (e_value=2e-28) Proteasome activator complex subunit 4 OS=Xenopus laevis GN=psme4; ">
      <seq>ggataaatccaagtcttctctcgaagaagctttaagtaatatattccaggaagaggggtttttcaatgaaaccctgaatagtctttctcatgttcatataattgacactgatggtgcttcttctaaaggaaatcatggcacctcctcatttcagagtgtggctgacaaatccattactcgattttattttgaattttcttcatcatggccccgtactcccaattggatatctttgtttggaaatgacacattctactcaagctttgcccgaatttttaaacgtctagtacaggaatgtggtgctcctgttatactggcactaaaagatgcattagcagactacataaatgcaaaggagaggacaaagcagtgtgttgctgctgaggcaatggcaggtgtgctacattctgatgtttccggtgtttcagaagcatgggatagctggttgatgacccattttcagagtattattcaagcaccaacagttgagtccatacctgagtgggcagcttgtattcgttatgcagttactggaaaaggaaaacatggaacaaaaattccactcttgagacaaaaggtcatggactgtttaatgaaccccttgcctgaaacagttagtactactgtagttgccaagcgatacatgtttctttcagctgcactaatagaagtttccccaccaaaaatgccagttactgaactagcgcttcactataagcttcttgaagaattgcttggcagtatgagccattcatctccacaagtgagggaatccattggtgtcaccctctctgttttatgctcaaacattcggctccaggtgtcctgcaatcaagctcatccacatgaagtaggaacaagtaatgtgaacaggaaagttgaagcagggaattgggatcattatctagtagaacgtgcatctgagcttgtggtgaagatccaaagttttagccagtcagacactctggatgtgcaaacggacatgatttctgacaatggagtattaaccgaacagtctcatgatgatgttaaatggatggagacgctatttcatttcattatctcatctctaaagtcaggaagatcctcggttctgctggatgttgttgttggtcttttgtatcctgtaatatctctacaggagacgtcaaataaggatttgtcgacactggccaaaatagcttttgaattgctaaagtggagagtttattcagagtcccatttaaggaaagttgtgctcaccattctttctatagccaatgataccaattggcgtacaagatctacgactctgacctatttacggagtttcatgtataggcacactttcgtcctctctaaggtggacaaacaacaaatttggcaaactgtcgagaagctactcgcagataatcaagttgaggtaagggagcatgcggcagcagtcttggctggcctaatgaagggcggagatgaagatttagctcaggatttccgtcatagagcttatacagaagcaagtatcattcagaagaagaggaaacaaagaagcatgcgttctggattctctgtagcatccctacatggaaagatacttgctttggctgcttgcgtgctatcagttccttatgatattcccagttggttaccagaacaggttacactattggctcaatttgtttctgaatcatcacctgtaaaatctaccgtgacaaaagctgtggcagagtttcgacgcactcatgcggacacatggaatgttcagaaagattccttcactgaagaacaacttgaggtcctggctgatacatcatcatcctcatcatactttgcttgacattcatggtgtgccttacatgagagatagaattataccatatcatatatctcatatattgtaagtgggaagcctccaagtctaaagttgaactacaaaaatgctcatacaattttttattaaaaattttgttctacaccaaaaattaaaagaaaaaacttttagacagaaaatcattcattttctacattgaatttgaacgtagaaaattgtgttgtcatcttcccacaattgttaaatgtttatttcaattttaaggttttggtttttcatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="-" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77961" stop="69001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77661" g_stop="76899" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76898" i_stop="75982" i_length="917">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75981" g_stop="75700" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="1045" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75699" i_stop="75623" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75622" g_stop="75527" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1046" r_stop="1141" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75526" i_stop="74075" i_length="1452">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74074" g_stop="73896" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1142" r_stop="1320" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73895" i_stop="73644" i_length="252">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73643" g_stop="73562" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1321" r_stop="1402" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73561" i_stop="72714" i_length="848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72713" g_stop="72589" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1403" r_stop="1527" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="72588" i_stop="71607" i_length="982">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71606" g_stop="71514" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1528" r_stop="1620" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71513" i_stop="70191" i_length="1323">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.713" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70190" g_stop="70037" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1621" r_stop="1774" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70036" i_stop="69645" i_length="392">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="69644" g_stop="69367" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1775" r_stop="2052" r_length="278" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="-" ref_id="SGN-U576669" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2052</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77661" e_stop="76899"/>
          <exon e_start="75981" e_stop="75700"/>
          <exon e_start="75622" e_stop="75527"/>
          <exon e_start="74074" e_stop="73896"/>
          <exon e_start="73643" e_stop="73562"/>
          <exon e_start="72713" e_stop="72589"/>
          <exon e_start="71606" e_stop="71514"/>
          <exon e_start="70190" e_stop="70037"/>
          <exon e_start="69644" e_stop="69367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAAATTCAAGTCTTCTCTCGAAGAAGCTTTAAGTAATATATTCCAGGAAGAGGGGTTTTTCAATGAAACCCTGAATAGTCTTTCTCATGTTCATATAATTGACACTGATGGTGCTTCTTCTAAAGGAAATCATGGCACCTCCTCATTTCAGAGTGTGGCTGACAAATCCATTACTCGATTTTATTTTGAATTTTCTTCATCATGGCCCCGTACTCCCAATTGGATATCTTTGTTTGGAAATGACACATTCTACTCAAGCTTTGCCCGAATTTTTAAACGTTTAGTACAGGAATGTGGTGCTCCTGTTATACTGGCACTAAAAGATGCATTAGCAGACTACATAAATGCAAAGGAGAGGACAAAGCAGTGTGTTGCTGCTGAGGCAGTGGCAGGTGTGCTACATTCTGATGTTTCCGGTGTTTCAGAAGCATGGGATAGCTGGTTGATGACCCATTTTCAGAGTATTATTCAAGCACCAACAGTTGAGTCCATACCTGAGTGGGCTGCTTGTATTCGTTATGCAGTTACTGGAAAAGGAAAACATGGAACAAAAATTCCACTCTTGAGACAAAAGGTCATGGACTGTTTAATGAACCCCTTGCCTGAAACAGTTAGTACTACTGTAGTTGCCAAGCGATACATGTTTCTTTCAGCTGCACTAATAGAAGTTTCCCCACCAAAAATGCCAGTTACTGAACTAGCGCTTCACTATAAGCTTCTTGAAGAATTGCTTGGCAGTATGAGCCATTCATCTCCACAAGTGAGTATTCAACGTTTCAATTTTCTGCTTAGGATCACAATTTATCATTTTCAGTTTCTCTATTATTTTTCTGGTTATGCTAAGAGTTGCTTGGTTACATGAGCCATTTGATATTTGATTTGATTGTCAAAGGAAGCATACGTTTATCTGTCGATCAACTCAAATCGCATACCTCTTTGATGAATTGCTTTGCTTGATAGGACTTTCCTTCTCGATCAGTTTTAGTTTTACAAGTTGAACTGGTTCTTCTCAGTTGTTCTACTGGAAAGACAAGCTTGTTAGTCTCAGCTTTTCCAGATCAATAGGTTCAGCTCTGAGCATCATTGTTGGGTCCCTTCTAAGATCTTCTAAAATATATTTTTCAATAACCTTTTTGCTCCTCATGGTTATGGATCCACATCTGATCTTGATCCCATTTTTTTTGTGCTTCCTCTCTTTTAATCTCGAAGGCATTATGGCCCCCACGTACATTCTCTTTGACCATTCTTCTTTTCAAGTTGTACATACATTGAGGCTATATCTTTGAGCTGATCTCGACTTCATAGTTTCATTACATTCCTTGTATCCAAAGTTGTTGAACTTTGAGGATCAAAAAGGTATTCTTTGACTCCTGTTCACCAAGAAAGATCTTTGACTACAACTTTTAATGTATAATGTCATCACTTATTTTGTTTTTGTTTAAGATTATTTTTTCATTTGTAAACGAGAACATTGTTACTTACTGTTCTTCATATCTAGTTTCTAACAAAAAGTTTATCTTTCAAAGACAAATTAATCTATGTTTAAGGGAAATTGATAAAATTGACCACCCCAGAAAAAGGAGTGGATCCTTTCACAGTTTCATCAATCTCCTTCAAAGTCTTCTGTAGAGTTTGTTGTTTCTGTGGTGACAGATAATGAAACAATTTCTGGAACAGGTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACGGTACAGTCAGCCAACTCATCTATTGGGCTTTTTGCACCTAAGACCTTTTATTGATTACTTGTTTTGGTGATATGCAGCTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAGGTTAGTTGCAACATCACATCATTCCCGTTGCTTGTCTTTTCAGTTGTTTTGACATTTTGAAGGGATGAAATTACTGTCTGAAGAACTTGGCATATACACACTTTCCCTCCATTTACGGATGAAAATGGTAAATCTTGTAACTGAGGTCTCTTGGAGTTGGAGAAAAGAAACTTTGATTTTTGTTTTTTGTCAATTTCTGTGATTGAGATCTCTTAGAAGAACAAACTTTGACTTATGATTTTTGACAAATTGATAAGAAGCATCTTGTTTATCTCATGGTGATAAGGCTATACTTTTAAGTTTTCTGTAATTTTTCTTGTCTTCAACAGCTATTTCTTGCAGTTCCTCACATTTGGCTGGTTGTTCTTTTTTTACCAACTACATATTTGTACCATTGGAACTAGAGGTCTGCCTTTCTTAGGTAATGAGGATGGAGAAATCTATGAAGGCAGGATATTATTGGAAATAGATGATTGGATTTAGTTGTTTCCATAGTTGAAATATAAGAGGAACTTCTGTGAGCCAAGTTAATAGGCTGATAATGCTGAAATTACATGTTTTTCTTCTTCTTCATCTCATCATTTGGCGTCTAAGATAGTTTTTTGAGTTACTGCTTTTTAGCTTGTTCAAATTTTACAAATGAGTGTGTACGAAATGTTGTGACCTAAGAAAATAACTAATTATCTCCTCTCTTTAAGGACTTAAGATTTTAGATGAGGTGACACCAATCAGGTTTGATTTTCGTTCCAATTAGTCAACCTTACTTGCCTATAAGAGTTAAGCCTGCATATCGTGGTATTGATGAAATCTTTAAAGAAATAAATCTCTCAACTTTAACAACATAGCTTTTAGGGAAGGTATAGCCACATCGTAAGAACTATTGCATTAAACTGTTGTCACATAAACTTCTCCTTGCCGAATTTTGATTCTTATCTCTCTCCGAGTCTTTAACTAAACTGACCTTTTCCCTTAACTGACGGGAGCTACTGTATATCAACAAGAAAGGATTAAATCGAAAAGACTCCTGTTGAAGAGTTCCATTTTTGGATTAAATTCTGACTGCAAGGCATCTCCATTGTTAATTTCCTATGGTTTTATGCTTGGTACACGAGCCATAGCCATTGAACTTGTATCCTGTACAAAGAAGGAGAATTGTGAGTCTGTGCTCCCTTCATGTTTTGGTGATATTTCGGGTGTATATATTATCCCAGACCATATTAGATCTGCATGTTTCTAATTCTTTCGTTCAGTTTTTGTCTTGATTTATATCTACATATGAAGTAAGTCCTAGTTAATTTTGTTCAAACGAATGATACTGAAAATTTGAATTATTGACATTTTTTCAGCTGTTGCACACGTGAAGAAATTGATACACTATAAATTAATATATTCTCATTGGAGGTGTTTATAATAGAAGTGCATTTCTCTTTTGATACTGTTGATTTTTTGTAGGAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTTAAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAGGTATGATCTTTCCGTTTTGATCTTCCCTCCTCTCTCCTCCTTCGGTGAAAAAAAGTCATTTTGGTTCTTGAAGAGAAAATGAGGTACTTTGAAAGAAACAAGTATTGTTATCATCACTCTACACTGAATCATTGTTATTTTTATTTCAAACTCAGTCTTCAGGTGTTGCGGTGGTCTAGAATAGCTAAGTGATGCAAAAATAAACTTGTAATATCCTGAATAAATGAGTTGCTATCTTGTTGCACCATACAGGCACACTTTCGTCCTCTCTAAGGTGGACAAACAACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAGGTAAGTTCACATAAATGTTAGCTGAAATATTTGCGGTATCAACTATGTAAATAATTAAAATGTTGTGCATTACCATATGATGTCTAGTCTTGGAGAAAGTAAGTGGATCTCTTGATGCTCTTTGCTTGTTTTGTTCAATGGTTGATATACAACAAATATATTATTGATTTCTCAAACCCCATATCCCTATAATAATGGTGAAGTAAGGGGTGGACCCAAAGGGAATTAACTGGTGGTTCTTGCTCGTAGCTTATTTAGGTAGCTTTTTTTGCCTTTTTAATTTCCTAAACTTACTGGATCATGTTTGATTACATAGAAGAGGAAAGGCTAGGATAATATACAATTTACCTCTTTGTCTATCCTATCATATGTTTGATGCACCAAAAGACAACCTTTTTTCAAAGATCACTCCTGCTTATCCTATGTCAGTATGTCTTGTTTAATTCTTTATAGTATTATCAAAGTCATCCATTTCTTATGGCCGTTCCTCTTCTATTGCTGTAGCCTGTAAGTGTGTCATGTGCTTAATATAGGACCATGAACTTATAGGTAGTAGATGTTATGTGTTTGATTGTAGACCTTTTTCAACCCTTCCTGTTCTGATCTAGTGAGATTATTATGCTTTTAAGTTGCTTGGTGTCTGAAAGTTTTTTAGTTTGAACGTACAATTGATTATCGCACCCCCATTTACTTAAGGCTTCATGCTCCCATTACTAAGTGGTGGTTCAAGTAGTCATTTAATATCCTTTCGATGATAAAAATAGCTTTAGTTCTCCCTGATTACTTAAATATGGAGATTATGGTGATTTAAAGAAGCTCATTTGAATTCTTCTGAATATTTTGGTCAGGTAAGGGAGCATGCGGCAGCAGTCTTGGCTGGCCTAATGAAGGGCGGAGATGAAGATTTAGCTCAGGATTTCCGTCATAGAGCTTATACAGAAGCAAGTATCATTCAGAAGAAGAGGAAACAAAGGTTCTTTTATTGTTTTAGTTTTACTCAATTTTGGCTAGTTATTATTACTATGCTTATATAATTTGTTGGGTTATTACTGATGATCATCCTAGAGAGGTCACATCTATCTGTATATTCTAACTCCATTTGCCTGGGATGGGCTTGTAACATTAATGATGATAACCTTAGAGAGATGAAGCCTGTCTTTATTATGTGAGATATGACATAAGGGGCTAACTCATCCCCAAAAACTAGCTCATGAGTGGAGGATTTTTCAAGTCCATATAAGCAAATCATTGTTTCCCTTCTCCAACCAATGTGGGACTTTAACACACTAAGTGCACCCTTCCACACCTAGGCCCAATTGGAGCATGGATCGGGAGCCCAAAGGGACCAGAGCGTAACTTAGTCCCAAAAGCTAACTCATGAGGGGAGGACTGCCAAGTCTAGACCACCGGTCCATTCCCCAACCGATGTGGGACTTTAACCCACTCTCACCATGCACCTGGCATGTTTTTGTTAAGTCCTTCCTGATGATCATTCTAGAGAGATCAAGCCTTTGTGCATATGAATTAACACCATGGTTTTGTTGCTCAAGATGTGTATATATATAATAATCATTTGCAATTCTACTAAAAGAATTCCTGTGAATTGTTTTGGTTTTGTAGTAGCTAATATTACGAAGATATTACACAAACATCAATTAAGCGACTAATTTGATTTGGATACCTAGGGCACCTAGAAAAGTGTGTTTCTATGTGTGGTTGGCAGCTAGGGGAGCGATACTGACAACCAAGAATCGTAGGAAGAGAAGGATCATACACATCACCGGATGTTGTATGTGTAGATTTTCTTGCAAACACAGTAGTGTTAGGATCCTTGTAAGATGAACAAGGATGATATAACTATCATTTTGTATTCCAAAACAAATGTTGTACTGATGGTTATATATTTACATATAATCAATGTGTTACCATTCTCAAAAATGAAATTGCTATTGCAGAAGCATGCGTTCTGGATTCTCTGTAGCATCCCTACATGGAAAGATACTTGCTTTGGCTGCTTGCGTGCTATCAGTTCCTTATGATATTCCCAGGTACGTCCATTGTCTGATATAGTTTCATATATTCAAGATATATTTCACTATCAGTTTCTTATAATATTCCCAGGCACACCGCCCATTATATAACATAAATTCATATGTTCAAAGATATATATGACCAAGTGTTATCCTAGGAAGTTCCTGGAAGTAGCAATCCACTGCAGGAATGATAAACAGCATTTTAACTTGTCACAAAAGATGAAGTAAAATAAAACGAAATGTAACTTAAACTGCGTTTGAGATGACCCTGATGATTAGGGCCAGCAATCTGATAAAATATTAAATTGATCAACTTATGCTGGTCCAAATTAATTGAGTGTGTGGAGATCGTGCTTAATGTTTTGAAGTATTCTAGCAGACAGTTTCTTTCAAGCAGTCTTTACAAAAGTGTAGGATAATCATGTTTATGGATTTCACATCCTAAGTATGGGGTCATAATTGTCGCTAACACGACGTCAACTTTTTTTCCACATGGTATATTGCTTTTAATTTCCATTGTATATTACCTATTCAATTTTATTTTGTTATATCTACTTGAATGTAGCTTGACATTCTAAACTTTCAAATTAGGAGTTAGTAATTTTGTTAATACAAAAGAGTCAAGTTACTTTCCATGCATTACATTTTATTAGTCAAGTTTCATATGCCATTCAGTGTATTGAATAGTAGCTGCTAGCTAGTGTCTTTCTTTTTCGAATTTTTTGGTTTTGTATAACTAAGATTTGTTAAAAGAAATAAATATATAAGCAAATTTTTTCTTTAATTTAGAGACTTATAAGTTTTAATACTTGATGGAAATACTGTATTTGTCTCCTGTCTTGTTTTACGTGATGTTGTTTGATTATGCATGAAGTTTAAGAAAGAAATGAAGGAAGACTTTTGAAACTTGTTGTCTAAAACAAGCCAAAAATGTTTGTGAGGCTATAAAACGTCTCATCAGAAAACAAACAAATCAGTCTATTAGTTAAAGAGTGTATTGTGTTATTTCACTTTTGCTGTTAAAAGAAATATGTAAGTGACGCAGAAGCATCGCTAGAACTCATAGAGTTTCTTAAGGATTAGAAGAGGGCAATGTGCTTGCTTACTGTATAGAAATTCCAGCACTAACTTTGTGCTGTTTACAAATAAAATTATTACCTTTTCAAAATATAATTCTTTTAAAGTTATAACTTATTTCTACATGTACAAAGATATCATTATTCTTTTTGAGATGGTCCAAAGTAGTGTACTACTATTAATCTTTAGATATTTTCAGTAATATGGATTACTCTAGAGAAATGTTTCTCATTAGTGACAAATTGCCAAATTTTATCGCAGTTGGTTACCAGAACAGGTTACACTATTGGCTCAATTTGTTTCTGAATCATCACCTGTAAAATCTACCGTGACAAAAGCTGTGGCAGAGTTTCGACGCACTCATGCGGACACATGGAATGTTCAGAAAGATTCCTTCACTGAAGAACAACTTGAGGTATGGTTCGCACGTACATTTATTGTTATTTTGTACATTTCGCTGATGTAGGTTCCTCTCCAAACTAAATTCTTTAACCAAATATTGACATACAAGCAAGGGTAATGTCAAAATTTAGATCCATGGGTACGACCTTGTTGAGATCTTTTGGCCAAGAGGGCTCTGTATTAAATTCCATCCAAAACTGGTTACTTGTTTAATGTGAAAAAGAAGTTTTTTTCTGAAGCTCTATAGAAGACTTGAACTTTTTTTTTACATCAAATCCTAGTTCCATATGGGATTTGAGATTTTGGCAAGAGAATTAGAAGAATTGAGTTGTTCAGCAAGCCACCTCTTATAATTGATGATTGGTGTTTTCTTAGCTAACAAGATCATTTGTGACATCTTTGCAGGTCCTGGCTGATACATCATCATCCTCATCATACTTTGCTTGACATTCATGGTGTGCCTTACATGAGAGATAGAATTATACCATATCATATATCTCATATATTGTAAGTGGGAAGTCTCCAAGTCTAAAGTTGAACTACAAAAATGCTCATACAATTTTTTATTAAAAATTTTGTTCTACACTAAAAATTAAAAGAAAAAACTTTTAGACAGAAAATCATTCATTTTCTACATTGAATTTGAACGTAGAAAATTGTGTTGTCATCTTCCCACAATTGTT</genome_strand>
        <mrna_strand>GGATAAATCCAAGTCTTCTCTCGAAGAAGCTTTAAGTAATATATTCCAGGAAGAGGGGTTTTTCAATGAAACCCTGAATAGTCTTTCTCATGTTCATATAATTGACACTGATGGTGCTTCTTCTAAAGGAAATCATGGCACCTCCTCATTTCAGAGTGTGGCTGACAAATCCATTACTCGATTTTATTTTGAATTTTCTTCATCATGGCCCCGTACTCCCAATTGGATATCTTTGTTTGGAAATGACACATTCTACTCAAGCTTTGCCCGAATTTTTAAACGTCTAGTACAGGAATGTGGTGCTCCTGTTATACTGGCACTAAAAGATGCATTAGCAGACTACATAAATGCAAAGGAGAGGACAAAGCAGTGTGTTGCTGCTGAGGCAATGGCAGGTGTGCTACATTCTGATGTTTCCGGTGTTTCAGAAGCATGGGATAGCTGGTTGATGACCCATTTTCAGAGTATTATTCAAGCACCAACAGTTGAGTCCATACCTGAGTGGGCAGCTTGTATTCGTTATGCAGTTACTGGAAAAGGAAAACATGGAACAAAAATTCCACTCTTGAGACAAAAGGTCATGGACTGTTTAATGAACCCCTTGCCTGAAACAGTTAGTACTACTGTAGTTGCCAAGCGATACATGTTTCTTTCAGCTGCACTAATAGAAGTTTCCCCACCAAAAATGCCAGTTACTGAACTAGCGCTTCACTATAAGCTTCTTGAAGAATTGCTTGGCAGTATGAGCCATTCATCTCCACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACG.............................................................................CTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTTAAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAG............................................................................................................................................................................................................................................................GCACACTTTCGTCCTCTCTAAGGTGGACAAACAACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGGAGCATGCGGCAGCAGTCTTGGCTGGCCTAATGAAGGGCGGAGATGAAGATTTAGCTCAGGATTTCCGTCATAGAGCTTATACAGAAGCAAGTATCATTCAGAAGAAGAGGAAACAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATGCGTTCTGGATTCTCTGTAGCATCCCTACATGGAAAGATACTTGCTTTGGCTGCTTGCGTGCTATCAGTTCCTTATGATATTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTACCAGAACAGGTTACACTATTGGCTCAATTTGTTTCTGAATCATCACCTGTAAAATCTACCGTGACAAAAGCTGTGGCAGAGTTTCGACGCACTCATGCGGACACATGGAATGTTCAGAAAGATTCCTTCACTGAAGAACAACTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGCTGATACATCATCATCCTCATCATACTTTGCTTGACATTCATGGTGTGCCTTACATGAGAGATAGAATTATACCATATCATATATCTCATATATTGTAAGTGGGAAGCCTCCAAGTCTAAAGTTGAACTACAAAAATGCTCATACAATTTTTTATTAAAAATTTTGTTCTACACCAAAAATTAAAAGAAAAAACTTTTAGACAGAAAATCATTCATTTTCTACATTGAATTTGAACGTAGAAAATTGTGTTGTCATCTTCCCACAATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U589246" ref_strand="+" ref_description="SGN-U589246 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157353278|emb|CAO45201.1| (e_value=1e-49) unnamed; (*ATH) AT3G13330.1 (e_value=2e-28) | Symbol: None | expressed protein | chr3:4319654-4330068 REVERSE | Aliases: MDC11.16; ">
      <seq>ctccacaagtgagggaatccattggtgtcaccctctctgttttatgctcaaacattcggctccaggtgtcctgcaatcaagctcatccacatgaagtaggaacaagtaatgtgaacaggaaagttgaagcagggaattgggatcattatctagtagaacgtgcatctgagcttgtggtgaagatccaaagttttagccagtcagacactctggatgtgcaaacggacatgatttctgacaatggagtattaaccgaacagtctcatgatgatgttaaatggatggagacgctatttcatttcattatctcatctctaaagtcaggaagatcctcggttctgctggatgttgttgttggtcttttgtatcctgtaatatctctacaggttagttgcaacatcacatcattcccgttgcttgtcttttcagttgttttgacattttgaagggatgaaattactgtctgaagaacttggcatatacacactttccctccatttacggatgaaaatggagacgtcaaataaggatttgtcgacactggccaaaatagcttttgaattgctaaagtggagagtttattcagagtcccatttaaaggaaagttgtgctcaccattctttctatagccaatgataccaattggcgtacaagatctacgactctgacctatttacggagtttcatgtataggcacactttcgtcctctctaaagtgacaaacacaaatttggcaaactgtcgagaagctactcgcagataatcaagttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="-" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76285" stop="73262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75981" g_stop="75700" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="290" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75699" i_stop="75623" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75622" g_stop="75400" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="513" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75399" i_stop="74075" i_length="1325">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74074" g_stop="73896" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="693" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73895" i_stop="73644" i_length="252">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73643" g_stop="73562" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="773" r_length="80" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="-" ref_id="SGN-U589246" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75981" e_stop="75700"/>
          <exon e_start="75622" e_stop="75400"/>
          <exon e_start="74074" e_stop="73896"/>
          <exon e_start="73643" e_stop="73562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACGGTACAGTCAGCCAACTCATCTATTGGGCTTTTTGCACCTAAGACCTTTTATTGATTACTTGTTTTGGTGATATGCAGCTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAGGTTAGTTGCAACATCACATCATTCCCGTTGCTTGTCTTTTCAGTTGTTTTGACATTTTGAAGGGATGAAATTACTGTCTGAAGAACTTGGCATATACACACTTTCCCTCCATTTACGGATGAAAATGGTAAATCTTGTAACTGAGGTCTCTTGGAGTTGGAGAAAAGAAACTTTGATTTTTGTTTTTTGTCAATTTCTGTGATTGAGATCTCTTAGAAGAACAAACTTTGACTTATGATTTTTGACAAATTGATAAGAAGCATCTTGTTTATCTCATGGTGATAAGGCTATACTTTTAAGTTTTCTGTAATTTTTCTTGTCTTCAACAGCTATTTCTTGCAGTTCCTCACATTTGGCTGGTTGTTCTTTTTTTACCAACTACATATTTGTACCATTGGAACTAGAGGTCTGCCTTTCTTAGGTAATGAGGATGGAGAAATCTATGAAGGCAGGATATTATTGGAAATAGATGATTGGATTTAGTTGTTTCCATAGTTGAAATATAAGAGGAACTTCTGTGAGCCAAGTTAATAGGCTGATAATGCTGAAATTACATGTTTTTCTTCTTCTTCATCTCATCATTTGGCGTCTAAGATAGTTTTTTGAGTTACTGCTTTTTAGCTTGTTCAAATTTTACAAATGAGTGTGTACGAAATGTTGTGACCTAAGAAAATAACTAATTATCTCCTCTCTTTAAGGACTTAAGATTTTAGATGAGGTGACACCAATCAGGTTTGATTTTCGTTCCAATTAGTCAACCTTACTTGCCTATAAGAGTTAAGCCTGCATATCGTGGTATTGATGAAATCTTTAAAGAAATAAATCTCTCAACTTTAACAACATAGCTTTTAGGGAAGGTATAGCCACATCGTAAGAACTATTGCATTAAACTGTTGTCACATAAACTTCTCCTTGCCGAATTTTGATTCTTATCTCTCTCCGAGTCTTTAACTAAACTGACCTTTTCCCTTAACTGACGGGAGCTACTGTATATCAACAAGAAAGGATTAAATCGAAAAGACTCCTGTTGAAGAGTTCCATTTTTGGATTAAATTCTGACTGCAAGGCATCTCCATTGTTAATTTCCTATGGTTTTATGCTTGGTACACGAGCCATAGCCATTGAACTTGTATCCTGTACAAAGAAGGAGAATTGTGAGTCTGTGCTCCCTTCATGTTTTGGTGATATTTCGGGTGTATATATTATCCCAGACCATATTAGATCTGCATGTTTCTAATTCTTTCGTTCAGTTTTTGTCTTGATTTATATCTACATATGAAGTAAGTCCTAGTTAATTTTGTTCAAACGAATGATACTGAAAATTTGAATTATTGACATTTTTTCAGCTGTTGCACACGTGAAGAAATTGATACACTATAAATTAATATATTCTCATTGGAGGTGTTTATAATAGAAGTGCATTTCTCTTTTGATACTGTTGATTTTTTGTAGGAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTT-AAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAGGTATGATCTTTCCGTTTTGATCTTCCCTCCTCTCTCCTCCTTCGGTGAAAAAAAGTCATTTTGGTTCTTGAAGAGAAAATGAGGTACTTTGAAAGAAACAAGTATTGTTATCATCACTCTACACTGAATCATTGTTATTTTTATTTCAAACTCAGTCTTCAGGTGTTGCGGTGGTCTAGAATAGCTAAGTGATGCAAAAATAAACTTGTAATATCCTGAATAAATGAGTTGCTATCTTGTTGCACCATACAGGCACACTTTCGTCCTCTCTAAGGTGGACAAACAACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAG</genome_strand>
        <mrna_strand>GTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACG.............................................................................CTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAGGTTAGTTGCAACATCACATCATTCCCGTTGCTTGTCTTTTCAGTTGTTTTGACATTTTGAAGGGATGAAATTACTGTCTGAAGAACTTGGCATATACACACTTTCCCTCCATTTACGGATGAAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTTAAAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAG............................................................................................................................................................................................................................................................GCACACTTTCGTCCTCTCTAAAGT-GACAAAC-ACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U604423" ref_strand="+" ref_description="SGN-U604423 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157353278|emb|CAO45201.1| (e_value=2e-52) unnamed; (*ATH) AT3G13330.1 (e_value=1e-34) | Symbol: None | expressed protein | chr3:4319654-4330068 REVERSE | Aliases: MDC11.16; ">
      <seq>aagggaaaaaaaggcctagttgggcacttattgacaaagcatgcatgcagggtacttggagagcctcacaatcatcatatcatatcttccggctgagtgcaaatgtatctccttcagatcatatcattcatttgacggatgatcttcttaatctctccttgcatagttatgaaacagtccgtggacttgctggaaaatctctcttgaagatgatgaagagatggccctctacaatctcaaaatgtgtgctcagtctgagtcagaacttgaaaaattctagctcaccagaatgcgcagtcttaagttcctgtgcagtccttgcaacgcaaactgttcttaaatgtttaacaacggatttgaaggcactttcttccttcctgcttggaattctgtcaagctctcatcatgaaacactaaaagctcagaaagccatcaatgagcttttcattaagtacaacattcatttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0019G22-U60Xu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0019G22.3" temp_strand="-" temp_description="C07SLe0019G22.3  AC212644.3 htgs_phase:2 submitted_to_sgn_as:gi|238909036|gb|AC212644.3| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0019G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="80784" stop="78993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80582" g_stop="80570" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80569" i_stop="80483" i_length="87">
            <donor d_prob="0.921" d_score="0.00"/>
            <acceptor a_prob="0.703" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80482" g_stop="80312" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="184" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80311" i_stop="79837" i_length="475">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79836" g_stop="79668" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="353" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79667" i_stop="79591" i_length="77">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79590" g_stop="79547" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="397" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79546" i_stop="79454" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79453" g_stop="79411" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="440" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79410" i_stop="79323" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.583" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79322" g_stop="79293" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="470" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0019G22.3" gen_strand="-" ref_id="SGN-U604423" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0019G22.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80582" e_stop="80570"/>
          <exon e_start="80482" e_stop="80312"/>
          <exon e_start="79836" e_stop="79668"/>
          <exon e_start="79590" e_stop="79547"/>
          <exon e_start="79453" e_stop="79411"/>
          <exon e_start="79322" e_stop="79293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAAAAAAAGGTAAATTTAGCTATGTTTTTGTATGTAAGACTCACGGCCATATTGAATATGGTGTTTCCGTCTTTGAAGATAACACCAATTTTGCAGGCCTAGTTGGGCACTTATTGACAAAGCATGCATGCATAGTACTTGGAGAGCCTCACAATCATCATATCATATCTTCCGGCTGAGTGCAAATGTATCTCCTTCAGATCATATCATTCATTTGACGGATGATCTTCTTAATCTCTCCTTGCATAGTTATGAAACAGTCCGTGGGTGAGTTCTAATCTTTCAATCATATTGTCTGAACATGTGTCCTCTTTGCCTTAAATGAGGTCAAAGTTTATAAATTCTTTGAATTTGAAATATTTCTACATCAACGAATAGAATAGCTGCAACAGGAGCTTCACAGTCGCTCTATATTGGACATACGGAAGCCTTTAAACCTTTTACTCATTCACTTAGTACTCATATATTAAATAGGTGCTTAAGCTAATATAATTACATGCTATTTTATCCTGTTGTAGGGAAGTCATGGAAGTAGAATAATGATATAATCTTTTGAGTGATTTAAGCAATACAATGAGGAGTACTAACTGTGTGCATATCTCTCATGGTCATTGTCCTGTCATTCTTAATTTCCATTGGGAAGACCATTTTTATGTTGATTGCTAATGATTAGGTCCCATAACCAAGTTGCATCTTCTGGAAGATTTTTTGTATCTCATCTATCTACTCCTCATTTCCTCAGACTTGCTGGAAAATCTCTCTTGAAGATGATGAAGAGATGGCCCTCTACAATCTCAAAATGTGTGCTCAGTCTGAGTCAGAACTTGAAAAATTCTAGCTCACCAGAATGCGCAGTCTTAGGTTCCTGTGCAGTCCTTGCAACGCAAACTGTTCTTAAATGTTTAACAACGGTACTGATCTTCATACTACATGCATTATTCTTTAGGAAGTGAGTACCTGACTTTGTTTTTGCTCTTCATGACACAAGGATTTGAAGGCACTTTCTTCCTTCCTGCTTGGAATTCTGTCAAGGTAAATTTTTTTGCTTGCATCTTGTTTAGCTTGTGATTCCTTATAGCCCAATGTTGGTGTTGACTCTTTGTTACCGAATCTTTATTGCTCAAGCTCTCATCATGAAACACTAAAAGCTCAGAAAGCCATCAATGAGGTGAGATATACATTCAAAGTCGAGTCTTTTCATTTCTCTTTTCTATGTTGACAAAAGAAAGTTTATTTTTTTATTGGATATCTTACAGCTTTTCATTAAGTACAACATTCATTTTTCT</genome_strand>
        <mrna_strand>AAGGGAAAAAAAG.......................................................................................GCCTAGTTGGGCACTTATTGACAAAGCATGCATGCAGGGTACTTGGAGAGCCTCACAATCATCATATCATATCTTCCGGCTGAGTGCAAATGTATCTCCTTCAGATCATATCATTCATTTGACGGATGATCTTCTTAATCTCTCCTTGCATAGTTATGAAACAGTCCGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGCTGGAAAATCTCTCTTGAAGATGATGAAGAGATGGCCCTCTACAATCTCAAAATGTGTGCTCAGTCTGAGTCAGAACTTGAAAAATTCTAGCTCACCAGAATGCGCAGTCTTAAGTTCCTGTGCAGTCCTTGCAACGCAAACTGTTCTTAAATGTTTAACAACG.............................................................................GATTTGAAGGCACTTTCTTCCTTCCTGCTTGGAATTCTGTCAAG.............................................................................................CTCTCATCATGAAACACTAAAAGCTCAGAAAGCCATCAATGAG........................................................................................CTTTTCATTAAGTACAACATTCATTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3759" PGL_stop="4247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3759" e_stop="4247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="3759" e_stop="4247" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3759" stop="4247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCGTTTTCACTAATCTTCAAATGCAAAAGCGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAGACCTCTATTGCTCAACAGGCCAGCCAAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACGCAACACACCAATTCCTTTATAGATTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACCAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTAGGAATGATTCTGCCTTTTCTTTGTGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTGGAACACAAATGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAAGGTCACACTTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACGTCTCCAGC</gDNA_template>
            <first_frame> Q  S  F  S  L  I  F  K  C  K  S  E  T  R  L  H  Q  T  *  E  R  V  I  N  L  T  V  K  Q  *  T  S  I  A  Q  Q  A  S  Q  S  R  K  T  I  Y  P  L  S  Y  P  T  W  T  T  *  T  F  N  A  T  H  Q  F  L  Y  R  F  R  S  G  L  Q  F  K  N  K  R  I  N  S  *  T  T  R  R  K  A  P  D  V  A  V  V  L  G  M  I  L  P  F  L  C  V  A  F  A  R  V  L  E  K  F  L  S  S  C  K  N  W  N  T  N  V  *  E  S  A  F  Y  M  G  K  S  L  S  *  T  S  L  P  L  V  G  K  V  T  L  F  *  R  H  R  E  V  C  T  Y  F  L  Y  V  S  S </first_frame>
            <second_frame>  N  R  F  H  *  S  S  N  A  K  A  K  H  D  Y  T  K  R  K  K  E  L  S  I  L  P  L  S  N  R  P  L  L  L  N  R  P  A  K  V  E  K  Q  S  T  H  *  A  I  P  P  G  Q  P  R  L  L  T  Q  H  T  N  S  F  I  D  L  G  V  V  Y  N  L  R  T  R  E  *  I  P  K  Q  P  D  E  K  L  Q  M  L  L  L  S  *  E  *  F  C  L  F  F  V  *  P  L  Q  E  F  L  K  S  F  Y  Q  V  A  K  T  G  T  Q  M  F  R  K  V  P  F  I  W  A  S  H  F  P  K  L  L  C  H  W  L  E  R  S  H  F  S  D  A  I  G  K  C  A  P  T  F  C  T  S  P   </second_frame>
            <third_frame>   I  V  F  T  N  L  Q  M  Q  K  R  N  T  I  T  P  N  V  R  K  S  Y  Q  S  Y  R  *  A  I  D  L  Y  C  S  T  G  Q  P  K  *  K  N  N  L  P  T  K  L  S  H  L  D  N  L  D  F  *  R  N  T  P  I  P  L  *  I  *  E  W  F  T  I  *  E  Q  E  N  K  F  L  N  N  Q  T  K  S  S  R  C  C  C  C  P  R  N  D  S  A  F  S  L  C  S  L  C  K  S  S  *  K  V  F  I  K  L  Q  K  L  E  H  K  C  L  G  K  C  L  L  Y  G  Q  V  T  F  L  N  F  F  A  I  G  W  K  G  H  T  F  L  T  P  S  G  S  V  H  L  L  S  V  R  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0019G22.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8711" PGL_stop="10714"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8711" e_stop="8915"/>
            <exon e_start="9040" e_stop="9238"/>
            <exon e_start="10337" e_stop="10714"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.678" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8711" e_stop="8915" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.678" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8916" i_stop="9039" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9040" e_stop="9238" e_length="199"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.925">
            <gDNA_intron_boundary i_start="9239" i_stop="10336" i_length="1098"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="10337" e_stop="10714" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8711" stop="8915"/>
              <exon start="9040" stop="9238"/>
              <exon start="10337" stop="10714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACTAGCTATGGCGGAAGTAGAAGAAAACCCAAAAGTGATCAATGAAGAAGATGAATATAAAGAAGAAGAGAAAATTATTCAACATTACTCTTCATTTCATCGGATACTCTTAGTGGGTGATGGAGATTTCTCTTTTTCTCTCTGTTTAGCTCAGTTTTTTGGTTCTGCATCGAATATTGTTGCTTCGTCTTTACAATTATATG : ATGAAGTGATCAAAATGTACAAGAATGGGCAATCGAACTTGGAAAAGCTGAAATCTTTGGGAGGAACTGTGTTGCATGGTGTGGATGCAACTGAAATACAGCTTCATACTGATCTCAGTAACCAGAAATTTGATAGGATTATCTATAATTTTCCTCATGCAGGGTTTTATGGCAGTGAAGATCGTGATCATGTAATACA : AATGCACAAGAATCTTGTGGGAAGTTTTTTTGGGAGTGCCAAGAAAATGTTGCGAGTTGATGGTCAAATTCATGTAACACATAAAATTGCTCCTCCATATGACCGTTGGGATCTTGTTGGACTTGGATGGAGAAACTCCTTGATTTGTATCGAATGTGCTGATTTCAAGATTGAAAATTACCCGGGTTACAACAATAAAAGAGGAGCTGGTTCAAAATGTGATGAGCCTTTTCATTTGGGTGAGTGCAATACCTTCAAGTTTATATTCAACCCATCTCTGAAGAATGTGCCAAGAACAAAACACAAGAAACGCTTTTTACATGCGCCATCTCAGAATCTTCAAAATGCCCCCAACTCCATAAGTCCTCCGTTTTACTC</gDNA_template>
            <first_frame> A  L  A  M  A  E  V  E  E  N  P  K  V  I  N  E  E  D  E  Y  K  E  E  E  K  I  I  Q  H  Y  S  S  F  H  R  I  L  L  V  G  D  G  D  F  S  F  S  L  C  L  A  Q  F  F  G  S  A  S  N  I  V  A  S  S  L  Q  L  Y   : D  E  V  I  K  M  Y  K  N  G  Q  S  N  L  E  K  L  K  S  L  G  G  T  V  L  H  G  V  D  A  T  E  I  Q  L  H  T  D  L  S  N  Q  K  F  D  R  I  I  Y  N  F  P  H  A  G  F  Y  G  S  E  D  R  D  H  V  I  Q :   M  H  K  N  L  V  G  S  F  F  G  S  A  K  K  M  L  R  V  D  G  Q  I  H  V  T  H  K  I  A  P  P  Y  D  R  W  D  L  V  G  L  G  W  R  N  S  L  I  C  I  E  C  A  D  F  K  I  E  N  Y  P  G  Y  N  N  K  R  G  A  G  S  K  C  D  E  P  F  H  L  G  E  C  N  T  F  K  F  I  F  N  P  S  L  K  N  V  P  R  T  K  H  K  K  R  F  L  H  A  P  S  Q  N  L  Q  N  A  P  N  S  I  S  P  P  F  Y   </first_frame>
            <second_frame>  H  *  L  W  R  K  *  K  K  T  Q  K  *  S  M  K  K  M  N  I  K  K  K  R  K  L  F  N  I  T  L  H  F  I  G  Y  S  *  W  V  M  E  I  S  L  F  L  S  V  *  L  S  F  L  V  L  H  R  I  L  L  L  R  L  Y  N  Y  M  :  M  K  *  S  K  C  T  R  M  G  N  R  T  W  K  S  *  N  L  W  E  E  L  C  C  M  V  W  M  Q  L  K  Y  S  F  I  L  I  S  V  T  R  N  L  I  G  L  S  I  I  F  L  M  Q  G  F  M  A  V  K  I  V  I  M  *  Y   : K  C  T  R  I  L  W  E  V  F  L  G  V  P  R  K  C  C  E  L  M  V  K  F  M  *  H  I  K  L  L  L  H  M  T  V  G  I  L  L  D  L  D  G  E  T  P  *  F  V  S  N  V  L  I  S  R  L  K  I  T  R  V  T  T  I  K  E  E  L  V  Q  N  V  M  S  L  F  I  W  V  S  A  I  P  S  S  L  Y  S  T  H  L  *  R  M  C  Q  E  Q  N  T  R  N  A  F  Y  M  R  H  L  R  I  F  K  M  P  P  T  P  *  V  L  R  F  T  </second_frame>
            <third_frame>   T  S  Y  G  G  S  R  R  K  P  K  S  D  Q  *  R  R  *  I  *  R  R  R  E  N  Y  S  T  L  L  F  I  S  S  D  T  L  S  G  *  W  R  F  L  F  F  S  L  F  S  S  V  F  W  F  C  I  E  Y  C  C  F  V  F  T  I  I  * :   *  S  D  Q  N  V  Q  E  W  A  I  E  L  G  K  A  E  I  F  G  R  N  C  V  A  W  C  G  C  N  *  N  T  A  S  Y  *  S  Q  *  P  E  I  *  *  D  Y  L  *  F  S  S  C  R  V  L  W  Q  *  R  S  *  S  C  N  T  :  N  A  Q  E  S  C  G  K  F  F  W  E  C  Q  E  N  V  A  S  *  W  S  N  S  C  N  T  *  N  C  S  S  I  *  P  L  G  S  C  W  T  W  M  E  K  L  L  D  L  Y  R  M  C  *  F  Q  D  *  K  L  P  G  L  Q  Q  *  K  R  S  W  F  K  M  *  *  A  F  S  F  G  *  V  Q  Y  L  Q  V  Y  I  Q  P  I  S  E  E  C  A  K  N  K  T  Q  E  T  L  F  T  C  A  I  S  E  S  S  K  C  P  Q  L  H  K  S  S  V  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8711" stop="8915"/>
                    <exon start="9040" stop="9238"/>
                    <exon start="10337" stop="10712"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALAMAEVEENPKVINEEDEYKEEEKIIQHYSSFHRILLVGDGDFSFSLCLAQFFGSASNIVASSLQLYDEVIKMYKNGQSNLEKLKSLGGTVLHGVDATEIQLHTDLSNQKFDRIIYNFPHAGFYGSEDRDHVIQMHKNLVGSFFGSAKKMLRVDGQIHVTHKIAPPYDRWDLVGLGWRNSLICIECADFKIENYPGYNNKRGAGSKCDEPFHLGECNTFKFIFNPSLKNVPRTKHKKRFLHAPSQNLQNAPNSISPPFY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11515" PGL_stop="10892"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11515" e_stop="10892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="11515" e_stop="10892" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11515" stop="10892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAAGCTCTTCAAATTATTTATTTATGATTAAGGTCTTTCAGCATACTTAAGAGAGACATTTGTTTTGGCACTCCCATGTAAGGAGTAGTTAATTAACAACAAATACTGGCATAAGCATATCTAGTTATTCACATAATTTATAGGTAATTTTCAATACCATGTTGCTCATGCATAAGCATATCTAGTTATTCACATAATTTATAGGTAATTTCCAATACCACGTTGCTCAATCAGCCTTCGATGAATCTCTGTTGTAAATTCAGAATTCTTGACCGGCACCAACAATGAAGCTCTTCCAAAGTTTCCAAGTAATCTCCAGGGGGCCTCCCGGTCTCATCCCTGAACATCACAGCACCATGATGTAGAGCTCGACAAACTGAATCTTCAACATTAGTGTCCACTCTTCCAAATGTTTCTTGAATATAAGTGAAATACTTTTTAAAGATCCTGAAAAGTTCACTTCTGGAGTCATGCCTTGCAGGTAAACCAACATGACTTGGAAAATCATTCACGTCATTCACATAAGATGGACGGAAGGAGTAAATAGGAGGACTTATGGAGTTGGGAACTTTTTGGAAGTTCTGATATGCATAATTTGGAGAACTGTTAATGCCATTGATG</gDNA_template>
            <first_frame> K  Q  A  L  Q  I  I  Y  L  *  L  R  S  F  S  I  L  K  R  D  I  C  F  G  T  P  M  *  G  V  V  N  *  Q  Q  I  L  A  *  A  Y  L  V  I  H  I  I  Y  R  *  F  S  I  P  C  C  S  C  I  S  I  S  S  Y  S  H  N  L  *  V  I  S  N  T  T  L  L  N  Q  P  S  M  N  L  C  C  K  F  R  I  L  D  R  H  Q  Q  *  S  S  S  K  V  S  K  *  S  P  G  G  L  P  V  S  S  L  N  I  T  A  P  *  C  R  A  R  Q  T  E  S  S  T  L  V  S  T  L  P  N  V  S  *  I  *  V  K  Y  F  L  K  I  L  K  S  S  L  L  E  S  C  L  A  G  K  P  T  *  L  G  K  S  F  T  S  F  T  *  D  G  R  K  E  *  I  G  G  L  M  E  L  G  T  F  W  K  F  *  Y  A  *  F  G  E  L  L  M  P  L  M </first_frame>
            <second_frame>  N  K  L  F  K  L  F  I  Y  D  *  G  L  S  A  Y  L  R  E  T  F  V  L  A  L  P  C  K  E  *  L  I  N  N  K  Y  W  H  K  H  I  *  L  F  T  *  F  I  G  N  F  Q  Y  H  V  A  H  A  *  A  Y  L  V  I  H  I  I  Y  R  *  F  P  I  P  R  C  S  I  S  L  R  *  I  S  V  V  N  S  E  F  L  T  G  T  N  N  E  A  L  P  K  F  P  S  N  L  Q  G  A  S  R  S  H  P  *  T  S  Q  H  H  D  V  E  L  D  K  L  N  L  Q  H  *  C  P  L  F  Q  M  F  L  E  Y  K  *  N  T  F  *  R  S  *  K  V  H  F  W  S  H  A  L  Q  V  N  Q  H  D  L  E  N  H  S  R  H  S  H  K  M  D  G  R  S  K  *  E  D  L  W  S  W  E  L  F  G  S  S  D  M  H  N  L  E  N  C  *  C  H  *   </second_frame>
            <third_frame>   T  S  S  S  N  Y  L  F  M  I  K  V  F  Q  H  T  *  E  R  H  L  F  W  H  S  H  V  R  S  S  *  L  T  T  N  T  G  I  S  I  S  S  Y  S  H  N  L  *  V  I  F  N  T  M  L  L  M  H  K  H  I  *  L  F  T  *  F  I  G  N  F  Q  Y  H  V  A  Q  S  A  F  D  E  S  L  L  *  I  Q  N  S  *  P  A  P  T  M  K  L  F  Q  S  F  Q  V  I  S  R  G  P  P  G  L  I  P  E  H  H  S  T  M  M  *  S  S  T  N  *  I  F  N  I  S  V  H  S  S  K  C  F  L  N  I  S  E  I  L  F  K  D  P  E  K  F  T  S  G  V  M  P  C  R  *  T  N  M  T  W  K  I  I  H  V  I  H  I  R  W  T  E  G  V  N  R  R  T  Y  G  V  G  N  F  L  E  V  L  I  C  I  I  W  R  T  V  N  A  I  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0019G22.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="16448" PGL_stop="18121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16448" e_stop="16461"/>
            <exon e_start="16567" e_stop="16645"/>
            <exon e_start="17582" e_stop="18121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.920" e_score="0.929"/>
          <exon-intron don_prob="0.995" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="16448" e_stop="16461" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.920">
            <gDNA_intron_boundary i_start="16462" i_stop="16566" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16567" e_stop="16645" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.967">
            <gDNA_intron_boundary i_start="16646" i_stop="17581" i_length="936"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="17582" e_stop="18121" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16448" stop="16461"/>
              <exon start="16567" stop="16645"/>
              <exon start="17582" stop="18121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581947" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGAACATGAAG : AAAAAAATTGTGATTGATCTTCCTATCAACACTGATAAATGTAGATCTAAAGCTATGCAAATTGCTGTTGGAAGTCCAG : GGGTGATATCAGTGAATATAGATAAGGAAAAAGGTCATTTGGTGGTAATAGGAATTGGTGTCGATTTCTTTAGGTTGATGCATTGCATAAGAAGGAAATTCAAGTGTTCTCGAATTGTGAGTGTTGAAGAAGTAAAACAAGAAGAAAAAAAGCCTGAACCCCCTAAACCTAAGGATCCTTGTACTTGTACTTGTACTTGTCCTTCAACATGTAATCCATGTGTACAATACTATCCAATATGTCAACCCGTTTATGACACTTACGATAATTCAAATTGCTCTATTATGTGATATATTGGGCATAGATCGAACTAGAGAGAAAGCTACGAATTTTATAATAAGATTTTAGTAATTATATTTATTTAAAAATTTAGTTTTTAGAATTAAAATTCTCTATCTTCAATATGTTGTTTTGGTCTGTTTATTAATTTTCTTTTTATTAATTCTTGATTTCATGATATGTAATGCACAATTTTCAATTGTATTTATATATAGAGAGAGATGTATAAATAATATGTTGGTAGATAATAATTAATGATAA</gDNA_template>
            <first_frame> T  R  T  *  R :   K  K  L  *  L  I  F  L  S  T  L  I  N  V  D  L  K  L  C  K  L  L  L  E  V  Q  :  G  *  Y  Q  *  I  *  I  R  K  K  V  I  W  W  *  *  E  L  V  S  I  S  L  G  *  C  I  A  *  E  G  N  S  S  V  L  E  L  *  V  L  K  K  *  N  K  K  K  K  S  L  N  P  L  N  L  R  I  L  V  L  V  L  V  L  V  L  Q  H  V  I  H  V  Y  N  T  I  Q  Y  V  N  P  F  M  T  L  T  I  I  Q  I  A  L  L  C  D  I  L  G  I  D  R  T  R  E  K  A  T  N  F  I  I  R  F  *  *  L  Y  L  F  K  N  L  V  F  R  I  K  I  L  Y  L  Q  Y  V  V  L  V  C  L  L  I  F  F  L  L  I  L  D  F  M  I  C  N  A  Q  F  S  I  V  F  I  Y  R  E  R  C  I  N  N  M  L  V  D  N  N  *  *  * </first_frame>
            <second_frame>  Q  E  H  E   : E  K  N  C  D  *  S  S  Y  Q  H  *  *  M  *  I  *  S  Y  A  N  C  C  W  K  S  R :   G  D  I  S  E  Y  R  *  G  K  R  S  F  G  G  N  R  N  W  C  R  F  L  *  V  D  A  L  H  K  K  E  I  Q  V  F  S  N  C  E  C  *  R  S  K  T  R  R  K  K  A  *  T  P  *  T  *  G  S  L  Y  L  Y  L  Y  L  S  F  N  M  *  S  M  C  T  I  L  S  N  M  S  T  R  L  *  H  L  R  *  F  K  L  L  Y  Y  V  I  Y  W  A  *  I  E  L  E  R  K  L  R  I  L  *  *  D  F  S  N  Y  I  Y  L  K  I  *  F  L  E  L  K  F  S  I  F  N  M  L  F  W  S  V  Y  *  F  S  F  Y  *  F  L  I  S  *  Y  V  M  H  N  F  Q  L  Y  L  Y  I  E  R  D  V  *  I  I  C  W  *  I  I  I  N  D   </second_frame>
            <third_frame>   K  N  M  K  :  K  K  I  V  I  D  L  P  I  N  T  D  K  C  R  S  K  A  M  Q  I  A  V  G  S  P   : G  V  I  S  V  N  I  D  K  E  K  G  H  L  V  V  I  G  I  G  V  D  F  F  R  L  M  H  C  I  R  R  K  F  K  C  S  R  I  V  S  V  E  E  V  K  Q  E  E  K  K  P  E  P  P  K  P  K  D  P  C  T  C  T  C  T  C  P  S  T  C  N  P  C  V  Q  Y  Y  P  I  C  Q  P  V  Y  D  T  Y  D  N  S  N  C  S  I  M  *  Y  I  G  H  R  S  N  *  R  E  S  Y  E  F  Y  N  K  I  L  V  I  I  F  I  *  K  F  S  F  *  N  *  N  S  L  S  S  I  C  C  F  G  L  F  I  N  F  L  F  I  N  S  *  F  H  D  M  *  C  T  I  F  N  C  I  Y  I  *  R  E  M  Y  K  *  Y  V  G  R  *  *  L  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16450" stop="16461"/>
                    <exon start="16567" stop="16645"/>
                    <exon start="17582" stop="17871"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNMKKKIVIDLPINTDKCRSKAMQIAVGSPGVISVNIDKEKGHLVVIGIGVDFFRLMHCIRRKFKCSRIVSVEEVKQEEKKPEPPKPKDPCTCTCTCPSTCNPCVQYYPICQPVYDTYDNSNCSIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21008" PGL_stop="22968"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21008" e_stop="21488"/>
            <exon e_start="21736" e_stop="21881"/>
            <exon e_start="21967" e_stop="22085"/>
            <exon e_start="22687" e_stop="22968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="21008" e_stop="21488" e_length="481"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21489" i_stop="21735" i_length="247"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21736" e_stop="21881" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21882" i_stop="21966" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21967" e_stop="22085" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22086" i_stop="22686" i_length="601"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22687" e_stop="22968" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21008" stop="21488"/>
              <exon start="21736" stop="21881"/>
              <exon start="21967" stop="22085"/>
              <exon start="22687" stop="22968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAAATCACCCAAAAGAAAAAGAATAAAAAACCTTTCTTTTTCTCCCAATTTTTTCTCAAAACAAAACCAAAACCAAAACCTCTCTGCAAAACTTCACTATCAATGGCGTAAAGCAATATCAAGAGACCCTCTTGCGTGTCCAAAATCTTTACACAATTGGGGCCATACCCACAAGAAAAGAAGGAAAAAAAAAACCTTAAAAGATACCTATTTACAGTGGAAGTAGAAGCATTTAAAAATTGATTTGTGTATGAGGAATATAGAGAAAAAAAGCAAAGCTGGGAAAGCACGGAGATTTATTGTTGGAAGGTTTATTCGATTGTATCCATGAAATCACGTCGGCGCTTGTGTTTTCGAAGATGAGTGATTCTGCTTATCGTGTTGATACTACTTCTCGTCTTGCTCAATGGCGAATCGACAATTTGGCTTCTTGTACTTATCGCAAATCAGATCCTTTCAAGATCGGAAAATGGAATTG : GCATTTAGCTGTGGAGAAGAACAGGACATTGTCTATTAAATTATATCCAGAGATATCAAATTTCACAAGAGAGAATCCTCCAGTTGCATCTTTTATTATTAGATTAATCTCGTCGTTGGGAGATCGCCAGACTTTGATTCACCCTG : AAGTTGTAGACAAGCAACTCAAGAGTAGCGAAGATTTTGTTTGGCCTATTGAAATCCCCTTAACCGGGAAGTTCATCATCGACGTTGAATTCCTTGATCTCAAGACTGCAACGCCTAAT : AGTGGGGAGCTGTGCTCAATCTGGGCTGAAGGATTAACCGAGAAACAATCGAATGCAACTGCTCTGTCATCACTTGGCCGGATGTTGTCTGAGAGCATTCACACGGACATCATAATCAATGCTTCAGATGGAAGCATTGGAGCGCATCGTGCAGTTCTTGCTGCAAGGTCACCTGTCTTCCGAAGCATGTTCTCCCATGACCTCAAAGAGAAAGAATTATCTGCTATAAACATCTCCGACATGTCAATAGAAGCTTGCCAATGCTTTCTGAATTACATTTAC</gDNA_template>
            <first_frame> K  Q  I  T  Q  K  K  K  N  K  K  P  F  F  F  S  Q  F  F  L  K  T  K  P  K  P  K  P  L  C  K  T  S  L  S  M  A  *  S  N  I  K  R  P  S  C  V  S  K  I  F  T  Q  L  G  P  Y  P  Q  E  K  K  E  K  K  N  L  K  R  Y  L  F  T  V  E  V  E  A  F  K  N  *  F  V  Y  E  E  Y  R  E  K  K  Q  S  W  E  S  T  E  I  Y  C  W  K  V  Y  S  I  V  S  M  K  S  R  R  R  L  C  F  R  R  *  V  I  L  L  I  V  L  I  L  L  L  V  L  L  N  G  E  S  T  I  W  L  L  V  L  I  A  N  Q  I  L  S  R  S  E  N  G  I   : G  I  *  L  W  R  R  T  G  H  C  L  L  N  Y  I  Q  R  Y  Q  I  S  Q  E  R  I  L  Q  L  H  L  L  L  L  D  *  S  R  R  W  E  I  A  R  L  *  F  T  L  :  K  L  *  T  S  N  S  R  V  A  K  I  L  F  G  L  L  K  S  P  *  P  G  S  S  S  S  T  L  N  S  L  I  S  R  L  Q  R  L  I :   V  G  S  C  A  Q  S  G  L  K  D  *  P  R  N  N  R  M  Q  L  L  C  H  H  L  A  G  C  C  L  R  A  F  T  R  T  S  *  S  M  L  Q  M  E  A  L  E  R  I  V  Q  F  L  L  Q  G  H  L  S  S  E  A  C  S  P  M  T  S  K  R  K  N  Y  L  L  *  T  S  P  T  C  Q  *  K  L  A  N  A  F  *  I  T  F   </first_frame>
            <second_frame>  N  K  S  P  K  R  K  R  I  K  N  L  S  F  S  P  N  F  F  S  K  Q  N  Q  N  Q  N  L  S  A  K  L  H  Y  Q  W  R  K  A  I  S  R  D  P  L  A  C  P  K  S  L  H  N  W  G  H  T  H  K  K  R  R  K  K  K  T  L  K  D  T  Y  L  Q  W  K  *  K  H  L  K  I  D  L  C  M  R  N  I  E  K  K  S  K  A  G  K  A  R  R  F  I  V  G  R  F  I  R  L  Y  P  *  N  H  V  G  A  C  V  F  E  D  E  *  F  C  L  S  C  *  Y  Y  F  S  S  C  S  M  A  N  R  Q  F  G  F  L  Y  L  S  Q  I  R  S  F  Q  D  R  K  M  E  L  :  A  F  S  C  G  E  E  Q  D  I  V  Y  *  I  I  S  R  D  I  K  F  H  K  R  E  S  S  S  C  I  F  Y  Y  *  I  N  L  V  V  G  R  S  P  D  F  D  S  P  * :   S  C  R  Q  A  T  Q  E  *  R  R  F  C  L  A  Y  *  N  P  L  N  R  E  V  H  H  R  R  *  I  P  *  S  Q  D  C  N  A  *   : *  W  G  A  V  L  N  L  G  *  R  I  N  R  E  T  I  E  C  N  C  S  V  I  T  W  P  D  V  V  *  E  H  S  H  G  H  H  N  Q  C  F  R  W  K  H  W  S  A  S  C  S  S  C  C  K  V  T  C  L  P  K  H  V  L  P  *  P  Q  R  E  R  I  I  C  Y  K  H  L  R  H  V  N  R  S  L  P  M  L  S  E  L  H  L  </second_frame>
            <third_frame>   T  N  H  P  K  E  K  E  *  K  T  F  L  F  L  P  I  F  S  Q  N  K  T  K  T  K  T  S  L  Q  N  F  T  I  N  G  V  K  Q  Y  Q  E  T  L  L  R  V  Q  N  L  Y  T  I  G  A  I  P  T  R  K  E  G  K  K  K  P  *  K  I  P  I  Y  S  G  S  R  S  I  *  K  L  I  C  V  *  G  I  *  R  K  K  A  K  L  G  K  H  G  D  L  L  L  E  G  L  F  D  C  I  H  E  I  T  S  A  L  V  F  S  K  M  S  D  S  A  Y  R  V  D  T  T  S  R  L  A  Q  W  R  I  D  N  L  A  S  C  T  Y  R  K  S  D  P  F  K  I  G  K  W  N  W :   H  L  A  V  E  K  N  R  T  L  S  I  K  L  Y  P  E  I  S  N  F  T  R  E  N  P  P  V  A  S  F  I  I  R  L  I  S  S  L  G  D  R  Q  T  L  I  H  P   : E  V  V  D  K  Q  L  K  S  S  E  D  F  V  W  P  I  E  I  P  L  T  G  K  F  I  I  D  V  E  F  L  D  L  K  T  A  T  P  N  :  S  G  E  L  C  S  I  W  A  E  G  L  T  E  K  Q  S  N  A  T  A  L  S  S  L  G  R  M  L  S  E  S  I  H  T  D  I  I  I  N  A  S  D  G  S  I  G  A  H  R  A  V  L  A  A  R  S  P  V  F  R  S  M  F  S  H  D  L  K  E  K  E  L  S  A  I  N  I  S  D  M  S  I  E  A  C  Q  C  F  L  N  Y  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21274" stop="21488"/>
                    <exon start="21736" stop="21881"/>
                    <exon start="21967" stop="22085"/>
                    <exon start="22687" stop="22968"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKAKLGKHGDLLLEGLFDCIHEITSALVFSKMSDSAYRVDTTSRLAQWRIDNLASCTYRKSDPFKIGKWNWHLAVEKNRTLSIKLYPEISNFTRENPPVASFIIRLISSLGDRQTLIHPEVVDKQLKSSEDFVWPIEIPLTGKFIIDVEFLDLKTATPNSGELCSIWAEGLTEKQSNATALSSLGRMLSESIHTDIIINASDGSIGAHRAVLAARSPVFRSMFSHDLKEKELSAINISDMSIEACQCFLNYIY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21009" stop="21236"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKSPKRKRIKNLSFSPNFFSKQNQNQNLSAKLHYQWRKAISRDPLACPKSLHNWGHTHKKRRKKKTLKDTYLQWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="28954" PGL_stop="29684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28954" e_stop="29684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="28954" e_stop="29684" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28954" stop="29684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCGGCTCTGCTCCCAAGTCTGCATCTTTCTCTCTTCAGTCGGATCTCAAAGGTATCCATAAACCGATCCATCTTCTTCTTCTTCAACGATTCAATCCAAATCCCTAATTTTCTCTGCAAATCTATACGTATAGTATATCTGTATCTATCCATTTTCCCCTTAATTAAGCACCTTTGAGTTGTCACTATCAATTATGGCTTCTTCTCCTGGTAATCCGAACCAGCCAGGTGGTACTGGTTCAGGACCATTTGATATACACAAATTCTTCAAACCCTCAACCCCAACAAACCCTAATCCCCAAAACCCTATAATTTCATCCCATTATCCATCTCCAAACGCTTCATACCCACCACCCACCCCCGGAGCCGGTGCTGGAGTCGGTGGGGTTTACCCTTACCAAACTCAGACTACAACCCCTTTTCGTCATCACCCTCAATTCACTCACAACTTGCCGCAATACAGTACACCACATGATACCCAGTTAATGCATCAGCAGAGATCCATGTCTTTCCCCACTCCACCGCTTCAACCACCACCACCTACTAGTAGTCCTCATCAATTCCCTAACCCTAATCCTGGTGCTACGCTTATGGCACTGTTGAGTCCTCAACCGTCTACTTCGGAAGTTCAGATACAGTCCACTATGCCTATGCCTCCTATACAACCTACCTCTTCGGGGTCTGAGCTTTCAGATTTTTCCTCTGGACCGAATGTTGGTGTTGCTCATTC</gDNA_template>
            <first_frame> W  R  L  C  S  Q  V  C  I  F  L  S  S  V  G  S  Q  R  Y  P  *  T  D  P  S  S  S  S  S  T  I  Q  S  K  S  L  I  F  S  A  N  L  Y  V  *  Y  I  C  I  Y  P  F  S  P  *  L  S  T  F  E  L  S  L  S  I  M  A  S  S  P  G  N  P  N  Q  P  G  G  T  G  S  G  P  F  D  I  H  K  F  F  K  P  S  T  P  T  N  P  N  P  Q  N  P  I  I  S  S  H  Y  P  S  P  N  A  S  Y  P  P  P  T  P  G  A  G  A  G  V  G  G  V  Y  P  Y  Q  T  Q  T  T  T  P  F  R  H  H  P  Q  F  T  H  N  L  P  Q  Y  S  T  P  H  D  T  Q  L  M  H  Q  Q  R  S  M  S  F  P  T  P  P  L  Q  P  P  P  P  T  S  S  P  H  Q  F  P  N  P  N  P  G  A  T  L  M  A  L  L  S  P  Q  P  S  T  S  E  V  Q  I  Q  S  T  M  P  M  P  P  I  Q  P  T  S  S  G  S  E  L  S  D  F  S  S  G  P  N  V  G  V  A  H   </first_frame>
            <second_frame>  G  G  S  A  P  K  S  A  S  F  S  L  Q  S  D  L  K  G  I  H  K  P  I  H  L  L  L  L  Q  R  F  N  P  N  P  *  F  S  L  Q  I  Y  T  Y  S  I  S  V  S  I  H  F  P  L  N  *  A  P  L  S  C  H  Y  Q  L  W  L  L  L  L  V  I  R  T  S  Q  V  V  L  V  Q  D  H  L  I  Y  T  N  S  S  N  P  Q  P  Q  Q  T  L  I  P  K  T  L  *  F  H  P  I  I  H  L  Q  T  L  H  T  H  H  P  P  P  E  P  V  L  E  S  V  G  F  T  L  T  K  L  R  L  Q  P  L  F  V  I  T  L  N  S  L  T  T  C  R  N  T  V  H  H  M  I  P  S  *  C  I  S  R  D  P  C  L  S  P  L  H  R  F  N  H  H  H  L  L  V  V  L  I  N  S  L  T  L  I  L  V  L  R  L  W  H  C  *  V  L  N  R  L  L  R  K  F  R  Y  S  P  L  C  L  C  L  L  Y  N  L  P  L  R  G  L  S  F  Q  I  F  P  L  D  R  M  L  V  L  L  I  </second_frame>
            <third_frame>   A  A  L  L  P  S  L  H  L  S  L  F  S  R  I  S  K  V  S  I  N  R  S  I  F  F  F  F  N  D  S  I  Q  I  P  N  F  L  C  K  S  I  R  I  V  Y  L  Y  L  S  I  F  P  L  I  K  H  L  *  V  V  T  I  N  Y  G  F  F  S  W  *  S  E  P  A  R  W  Y  W  F  R  T  I  *  Y  T  Q  I  L  Q  T  L  N  P  N  K  P  *  S  P  K  P  Y  N  F  I  P  L  S  I  S  K  R  F  I  P  T  T  H  P  R  S  R  C  W  S  R  W  G  L  P  L  P  N  S  D  Y  N  P  F  S  S  S  P  S  I  H  S  Q  L  A  A  I  Q  Y  T  T  *  Y  P  V  N  A  S  A  E  I  H  V  F  P  H  S  T  A  S  T  T  T  T  Y  *  *  S  S  S  I  P  *  P  *  S  W  C  Y  A  Y  G  T  V  E  S  S  T  V  Y  F  G  S  S  D  T  V  H  Y  A  Y  A  S  Y  T  T  Y  L  F  G  V  *  A  F  R  F  F  L  W  T  E  C  W  C  C  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29119" stop="29682"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSTFELSLSIMASSPGNPNQPGGTGSGPFDIHKFFKPSTPTNPNPQNPIISSHYPSPNASYPPPTPGAGAGVGGVYPYQTQTTTPFRHHPQFTHNLPQYSTPHDTQLMHQQRSMSFPTPPLQPPPPTSSPHQFPNPNPGATLMALLSPQPSTSEVQIQSTMPMPPIQPTSSGSELSDFSSGPNVGVAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="34503" PGL_stop="38498"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34503" e_stop="34865"/>
            <exon e_start="35518" e_stop="35877"/>
            <exon e_start="35949" e_stop="36068"/>
            <exon e_start="36336" e_stop="36506"/>
            <exon e_start="37073" e_stop="37228"/>
            <exon e_start="37403" e_stop="37528"/>
            <exon e_start="37967" e_stop="38498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="0.997"/>
          <exon-intron don_prob="0.953" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.577" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="34503" e_stop="34865" e_length="363"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34866" i_stop="35517" i_length="652"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35518" e_stop="35877" e_length="360"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.986">
            <gDNA_intron_boundary i_start="35878" i_stop="35948" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35949" e_stop="36068" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="36069" i_stop="36335" i_length="267"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36336" e_stop="36506" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.950">
            <gDNA_intron_boundary i_start="36507" i_stop="37072" i_length="566"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37073" e_stop="37228" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37229" i_stop="37402" i_length="174"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37403" e_stop="37528" e_length="126"/>
          </exon>
          <intron i_serial="6" don_prob="0.577" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37529" i_stop="37966" i_length="438"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="37967" e_stop="38498" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34503" stop="34865"/>
              <exon start="35518" stop="35877"/>
              <exon start="35949" stop="36068"/>
              <exon start="36336" stop="36506"/>
              <exon start="37073" stop="37228"/>
              <exon start="37403" stop="37528"/>
              <exon start="37967" stop="38498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCGCACCTTATCTCCCGAGACCTATACTGTAGAGGAATCTAGGCAGTTTGATGGGGTTAGTGGAAGTGAGGGACCATCTCAACCTTCAGTTACACCAGAGGAAGATCATGACTCTGCAAAGGACATCTCTGAAAAAGATTTAGACTCAACTATGTCAGTCACTGTTCATCAACCACCAGCTCCCAGTGTAAAAGGGAAAAAGCAAAAGGGGAAGAATTCTCAAGTGTCTGGCCCATCTTCAGCATCGCCTAGTGCTTTTAATTCAACAGATTCTCCAAATGAGGCTGTTGTCAGCTCAAGTACCCCTTCTATGGAAAGTGCTTTCTCACAAATTTTGTCCATGCGTGAGATGCTTAATCAG : GTTCTGACTATGCAAAAAGAAACACAAAAGCAGATGGAAGTGATGGTCGCTGTTCCAGTGACCAAAGAAGGAAGAAGACTTGAAGCTGCCTTGGGAAGGAGCATGGAAAAATCTGTCAAGGCCAATTCTGATGCTTTATGGGCTCGTTTACAAGAAGAGAGTGCAAAACAGGAGAAGTCTCTCCGTGATCGTACACAACAAATAACCAATTTGATCTCTAACTGCTTAAATAAGGACATGCCAGGTCTGATGGAAAAATTAATGAAGAAAGAGCTAGCAGCTGTTGGACAAGCTGTAGCACGCAGCATTACCCCTGCTATAGAGAAAACAATATCATCTGCAATTTTAGAGGCCTTCCAG : AAAGGAGTTGGTGACAAGGCAGTGAACCAACTAGAGAAAGCAGTAAACTCCAAACTTGAAGCTACTGTAGCTAGACAAATCCAAGCACAGTTCCAAACCTCTGGCAAGCAAGCTCTTCAG : GAAACACTGAAATCTACTCTGGAAGTCTCAGTGATCCCTGCCTTCGAGATGTCATGCAAGGCAATGTTTGAGCAAGTAAATTCAACATTTCAGAAAGGCATTGCTGACCACACAGTTGCTGCACAACAGCAATTTGAGTCCGTGCATTCACCTTTGGCAATCGCTCTGAGA : GATGCCATCAATTCAGCATCGGCAATGACACAGACACTGAGCGGAGAGCTTGCTGATAGTCAGAGACAGTTGCTTGCTCTTGCAGTTTCTGGAGCAAATTCCCAATCAGCAAATCCACTCAACCACATGAATAATGGATCATTGCTACATGAAAAG : ATTGAGACACCTCCAGATCCAACCAAAGAGATATCTAGACAGTTAGGGGAGCACAAGTATGAGGAAGCATTCACTGCAGCATTACAAATGAGTGATGTGTCAATTGTGTCATGGTTATGCTCTCAG : GTTGATTTGGCTGGGATTTTATCGTTGAATCCCCTCCCTCTGAGCCAAGGAGTGCTCCTTTCCCTTCTTCAGCAGTTATCGTGTGGTATTAGCTCAGAGACGGTCCAAAAACTCTCTTGGATGAGGGATGTGCTCTCTGCCATCAATCCAAATGACCCACTGATTGTAGTGCATGTTCGGCCCATCTTTGAGCAAGTATATCAGATGTTAGTACAACGCAGAAACGCTGCTACCACTCCTCCTGCTGAACTTTCAATCATTCGGCTTCTTGTGCATGTTATCAATTCGATGATGATGGCTGTTAAATGATGATCCTATTTGGTGAACGTAGTAAAAGCCCCCAAATCCCAGTGGATTTCATGAAAAGGCTTCAAGTCTTACCCGACAATTGAAGTGTACAGTGTACACCAACCTCCAATTATCTCTTCTCTCCTTTGGTTCAACTCTTTCTACATAAAATCTGTAATCGTTTTGCCTAAATTCTCAAGTTGTAGACACTTACTTAGCAAAAGAAAAACAAAAAGTAATTTTC</gDNA_template>
            <first_frame> C  R  T  L  S  P  E  T  Y  T  V  E  E  S  R  Q  F  D  G  V  S  G  S  E  G  P  S  Q  P  S  V  T  P  E  E  D  H  D  S  A  K  D  I  S  E  K  D  L  D  S  T  M  S  V  T  V  H  Q  P  P  A  P  S  V  K  G  K  K  Q  K  G  K  N  S  Q  V  S  G  P  S  S  A  S  P  S  A  F  N  S  T  D  S  P  N  E  A  V  V  S  S  S  T  P  S  M  E  S  A  F  S  Q  I  L  S  M  R  E  M  L  N  Q  :  V  L  T  M  Q  K  E  T  Q  K  Q  M  E  V  M  V  A  V  P  V  T  K  E  G  R  R  L  E  A  A  L  G  R  S  M  E  K  S  V  K  A  N  S  D  A  L  W  A  R  L  Q  E  E  S  A  K  Q  E  K  S  L  R  D  R  T  Q  Q  I  T  N  L  I  S  N  C  L  N  K  D  M  P  G  L  M  E  K  L  M  K  K  E  L  A  A  V  G  Q  A  V  A  R  S  I  T  P  A  I  E  K  T  I  S  S  A  I  L  E  A  F  Q  :  K  G  V  G  D  K  A  V  N  Q  L  E  K  A  V  N  S  K  L  E  A  T  V  A  R  Q  I  Q  A  Q  F  Q  T  S  G  K  Q  A  L  Q  :  E  T  L  K  S  T  L  E  V  S  V  I  P  A  F  E  M  S  C  K  A  M  F  E  Q  V  N  S  T  F  Q  K  G  I  A  D  H  T  V  A  A  Q  Q  Q  F  E  S  V  H  S  P  L  A  I  A  L  R  :  D  A  I  N  S  A  S  A  M  T  Q  T  L  S  G  E  L  A  D  S  Q  R  Q  L  L  A  L  A  V  S  G  A  N  S  Q  S  A  N  P  L  N  H  M  N  N  G  S  L  L  H  E  K  :  I  E  T  P  P  D  P  T  K  E  I  S  R  Q  L  G  E  H  K  Y  E  E  A  F  T  A  A  L  Q  M  S  D  V  S  I  V  S  W  L  C  S  Q  :  V  D  L  A  G  I  L  S  L  N  P  L  P  L  S  Q  G  V  L  L  S  L  L  Q  Q  L  S  C  G  I  S  S  E  T  V  Q  K  L  S  W  M  R  D  V  L  S  A  I  N  P  N  D  P  L  I  V  V  H  V  R  P  I  F  E  Q  V  Y  Q  M  L  V  Q  R  R  N  A  A  T  T  P  P  A  E  L  S  I  I  R  L  L  V  H  V  I  N  S  M  M  M  A  V  K  *  *  S  Y  L  V  N  V  V  K  A  P  K  S  Q  W  I  S  *  K  G  F  K  S  Y  P  T  I  E  V  Y  S  V  H  Q  P  P  I  I  S  S  L  L  W  F  N  S  F  Y  I  K  S  V  I  V  L  P  K  F  S  S  C  R  H  L  L  S  K  R  K  T  K  S  N  F  </first_frame>
            <second_frame>  V  A  P  Y  L  P  R  P  I  L  *  R  N  L  G  S  L  M  G  L  V  E  V  R  D  H  L  N  L  Q  L  H  Q  R  K  I  M  T  L  Q  R  T  S  L  K  K  I  *  T  Q  L  C  Q  S  L  F  I  N  H  Q  L  P  V  *  K  G  K  S  K  R  G  R  I  L  K  C  L  A  H  L  Q  H  R  L  V  L  L  I  Q  Q  I  L  Q  M  R  L  L  S  A  Q  V  P  L  L  W  K  V  L  S  H  K  F  C  P  C  V  R  C  L  I  R :   F  *  L  C  K  K  K  H  K  S  R  W  K  *  W  S  L  F  Q  *  P  K  K  E  E  D  L  K  L  P  W  E  G  A  W  K  N  L  S  R  P  I  L  M  L  Y  G  L  V  Y  K  K  R  V  Q  N  R  R  S  L  S  V  I  V  H  N  K  *  P  I  *  S  L  T  A  *  I  R  T  C  Q  V  *  W  K  N  *  *  R  K  S  *  Q  L  L  D  K  L  *  H  A  A  L  P  L  L  *  R  K  Q  Y  H  L  Q  F  *  R  P  S  R :   K  E  L  V  T  R  Q  *  T  N  *  R  K  Q  *  T  P  N  L  K  L  L  *  L  D  K  S  K  H  S  S  K  P  L  A  S  K  L  F  R :   K  H  *  N  L  L  W  K  S  Q  *  S  L  P  S  R  C  H  A  R  Q  C  L  S  K  *  I  Q  H  F  R  K  A  L  L  T  T  Q  L  L  H  N  S  N  L  S  P  C  I  H  L  W  Q  S  L  *  E :   M  P  S  I  Q  H  R  Q  *  H  R  H  *  A  E  S  L  L  I  V  R  D  S  C  L  L  L  Q  F  L  E  Q  I  P  N  Q  Q  I  H  S  T  T  *  I  M  D  H  C  Y  M  K  R :   L  R  H  L  Q  I  Q  P  K  R  Y  L  D  S  *  G  S  T  S  M  R  K  H  S  L  Q  H  Y  K  *  V  M  C  Q  L  C  H  G  Y  A  L  R :   L  I  W  L  G  F  Y  R  *  I  P  S  L  *  A  K  E  C  S  F  P  F  F  S  S  Y  R  V  V  L  A  Q  R  R  S  K  N  S  L  G  *  G  M  C  S  L  P  S  I  Q  M  T  H  *  L  *  C  M  F  G  P  S  L  S  K  Y  I  R  C  *  Y  N  A  E  T  L  L  P  L  L  L  L  N  F  Q  S  F  G  F  L  C  M  L  S  I  R  *  *  W  L  L  N  D  D  P  I  W  *  T  *  *  K  P  P  N  P  S  G  F  H  E  K  A  S  S  L  T  R  Q  L  K  C  T  V  Y  T  N  L  Q  L  S  L  L  S  F  G  S  T  L  S  T  *  N  L  *  S  F  C  L  N  S  Q  V  V  D  T  Y  L  A  K  E  K  Q  K  V  I  F </second_frame>
            <third_frame>   S  H  L  I  S  R  D  L  Y  C  R  G  I  *  A  V  *  W  G  *  W  K  *  G  T  I  S  T  F  S  Y  T  R  G  R  S  *  L  C  K  G  H  L  *  K  R  F  R  L  N  Y  V  S  H  C  S  S  T  T  S  S  Q  C  K  R  E  K  A  K  G  E  E  F  S  S  V  W  P  I  F  S  I  A  *  C  F  *  F  N  R  F  S  K  *  G  C  C  Q  L  K  Y  P  F  Y  G  K  C  F  L  T  N  F  V  H  A  *  D  A  *  S   : G  S  D  Y  A  K  R  N  T  K  A  D  G  S  D  G  R  C  S  S  D  Q  R  R  K  K  T  *  S  C  L  G  K  E  H  G  K  I  C  Q  G  Q  F  *  C  F  M  G  S  F  T  R  R  E  C  K  T  G  E  V  S  P  *  S  Y  T  T  N  N  Q  F  D  L  *  L  L  K  *  G  H  A  R  S  D  G  K  I  N  E  E  R  A  S  S  C  W  T  S  C  S  T  Q  H  Y  P  C  Y  R  E  N  N  I  I  C  N  F  R  G  L  P   : E  R  S  W  *  Q  G  S  E  P  T  R  E  S  S  K  L  Q  T  *  S  Y  C  S  *  T  N  P  S  T  V  P  N  L  W  Q  A  S  S  S   : G  N  T  E  I  Y  S  G  S  L  S  D  P  C  L  R  D  V  M  Q  G  N  V  *  A  S  K  F  N  I  S  E  R  H  C  *  P  H  S  C  C  T  T  A  I  *  V  R  A  F  T  F  G  N  R  S  E   : R  C  H  Q  F  S  I  G  N  D  T  D  T  E  R  R  A  C  *  *  S  E  T  V  A  C  S  C  S  F  W  S  K  F  P  I  S  K  S  T  Q  P  H  E  *  W  I  I  A  T  *  K   : D  *  D  T  S  R  S  N  Q  R  D  I  *  T  V  R  G  A  Q  V  *  G  S  I  H  C  S  I  T  N  E  *  C  V  N  C  V  M  V  M  L  S   : G  *  F  G  W  D  F  I  V  E  S  P  P  S  E  P  R  S  A  P  F  P  S  S  A  V  I  V  W  Y  *  L  R  D  G  P  K  T  L  L  D  E  G  C  A  L  C  H  Q  S  K  *  P  T  D  C  S  A  C  S  A  H  L  *  A  S  I  S  D  V  S  T  T  Q  K  R  C  Y  H  S  S  C  *  T  F  N  H  S  A  S  C  A  C  Y  Q  F  D  D  D  G  C  *  M  M  I  L  F  G  E  R  S  K  S  P  Q  I  P  V  D  F  M  K  R  L  Q  V  L  P  D  N  *  S  V  Q  C  T  P  T  S  N  Y  L  F  S  P  L  V  Q  L  F  L  H  K  I  C  N  R  F  A  *  I  L  K  L  *  T  L  T  *  Q  K  K  N  K  K  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34503" stop="34865"/>
                    <exon start="35518" stop="35877"/>
                    <exon start="35949" stop="36068"/>
                    <exon start="36336" stop="36506"/>
                    <exon start="37073" stop="37228"/>
                    <exon start="37403" stop="37528"/>
                    <exon start="37967" stop="38275"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1602</number_coding_nucleotides>
                  <number_encoded_amino_acids>534</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRTLSPETYTVEESRQFDGVSGSEGPSQPSVTPEEDHDSAKDISEKDLDSTMSVTVHQPPAPSVKGKKQKGKNSQVSGPSSASPSAFNSTDSPNEAVVSSSTPSMESAFSQILSMREMLNQVLTMQKETQKQMEVMVAVPVTKEGRRLEAALGRSMEKSVKANSDALWARLQEESAKQEKSLRDRTQQITNLISNCLNKDMPGLMEKLMKKELAAVGQAVARSITPAIEKTISSAILEAFQKGVGDKAVNQLEKAVNSKLEATVARQIQAQFQTSGKQALQETLKSTLEVSVIPAFEMSCKAMFEQVNSTFQKGIADHTVAAQQQFESVHSPLAIALRDAINSASAMTQTLSGELADSQRQLLALAVSGANSQSANPLNHMNNGSLLHEKIETPPDPTKEISRQLGEHKYEEAFTAALQMSDVSIVSWLCSQVDLAGILSLNPLPLSQGVLLSLLQQLSCGISSETVQKLSWMRDVLSAINPNDPLIVVHVRPIFEQVYQMLVQRRNAATTPPAELSIIRLLVHVINSMMMAVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="39481" PGL_stop="38849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39481" e_stop="38849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="39481" e_stop="38849" e_length="633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39481" stop="38849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAAAACAAAATTTGAAATGATTCAATCCCTAACCCTAATTTCTTCATCTCCCTTCCCCTTTCCCCTTCATCAATCCTCCAATTCCGCCGACGCGGCGATACAGTCTAATCGCTACAGTTTATTCAACGGAAAGAGTAATCGGAGGGGGAGAATATGTGCATCTGCCGTTGCCGAAGCTCCGATGATGATGGAGAAAAGATCGGTGAGTTTATATGAGATTTTAAGAGTTAAAAGAGATGCATCACCGAAAGAGATTAAAGCTGCTTACCGGAATTTAGCGAAATTGTATCATCCTGACTCTGCTTCTCTGCCGGAGGAATCGTCCGACGGACGGAATTTCATTGAGATTCACGATGCTTATGTCACGCTATCTGATCCTTCAGCTAGAGCTCTCTACGATCTGAAGCTGAGCGTTGGCTCTCGCCGGCGAGGTTTTGCCCGGTCGGTTGATGGATTTCGTATATACCCGACCCGGAGATGGGAAACGGATCAATGCTGGTGATAGGAGATGATTTAGGAACCTGCATTTCTCCGCACTCTACTTTTTTTTTTTGTCTAATGGCATTTTTATGGAGATTTAGCTAATGTATATACTATATCCTGCTTTTAATTATTATTTTTTTGGTTCCTT</gDNA_template>
            <first_frame> P  K  T  K  F  E  M  I  Q  S  L  T  L  I  S  S  S  P  F  P  F  P  L  H  Q  S  S  N  S  A  D  A  A  I  Q  S  N  R  Y  S  L  F  N  G  K  S  N  R  R  G  R  I  C  A  S  A  V  A  E  A  P  M  M  M  E  K  R  S  V  S  L  Y  E  I  L  R  V  K  R  D  A  S  P  K  E  I  K  A  A  Y  R  N  L  A  K  L  Y  H  P  D  S  A  S  L  P  E  E  S  S  D  G  R  N  F  I  E  I  H  D  A  Y  V  T  L  S  D  P  S  A  R  A  L  Y  D  L  K  L  S  V  G  S  R  R  R  G  F  A  R  S  V  D  G  F  R  I  Y  P  T  R  R  W  E  T  D  Q  C  W  *  *  E  M  I  *  E  P  A  F  L  R  T  L  L  F  F  F  V  *  W  H  F  Y  G  D  L  A  N  V  Y  T  I  S  C  F  *  L  L  F  F  W  F  L </first_frame>
            <second_frame>  L  K  Q  N  L  K  *  F  N  P  *  P  *  F  L  H  L  P  S  P  F  P  F  I  N  P  P  I  P  P  T  R  R  Y  S  L  I  A  T  V  Y  S  T  E  R  V  I  G  G  G  E  Y  V  H  L  P  L  P  K  L  R  *  *  W  R  K  D  R  *  V  Y  M  R  F  *  E  L  K  E  M  H  H  R  K  R  L  K  L  L  T  G  I  *  R  N  C  I  I  L  T  L  L  L  C  R  R  N  R  P  T  D  G  I  S  L  R  F  T  M  L  M  S  R  Y  L  I  L  Q  L  E  L  S  T  I  *  S  *  A  L  A  L  A  G  E  V  L  P  G  R  L  M  D  F  V  Y  T  R  P  G  D  G  K  R  I  N  A  G  D  R  R  *  F  R  N  L  H  F  S  A  L  Y  F  F  F  L  S  N  G  I  F  M  E  I  *  L  M  Y  I  L  Y  P  A  F  N  Y  Y  F  F  G  S   </second_frame>
            <third_frame>   *  N  K  I  *  N  D  S  I  P  N  P  N  F  F  I  S  L  P  L  S  P  S  S  I  L  Q  F  R  R  R  G  D  T  V  *  S  L  Q  F  I  Q  R  K  E  *  S  E  G  E  N  M  C  I  C  R  C  R  S  S  D  D  D  G  E  K  I  G  E  F  I  *  D  F  K  S  *  K  R  C  I  T  E  R  D  *  S  C  L  P  E  F  S  E  I  V  S  S  *  L  C  F  S  A  G  G  I  V  R  R  T  E  F  H  *  D  S  R  C  L  C  H  A  I  *  S  F  S  *  S  S  L  R  S  E  A  E  R  W  L  S  P  A  R  F  C  P  V  G  *  W  I  S  Y  I  P  D  P  E  M  G  N  G  S  M  L  V  I  G  D  D  L  G  T  C  I  S  P  H  S  T  F  F  F  C  L  M  A  F  L  W  R  F  S  *  C  I  Y  Y  I  L  L  L  I  I  I  F  L  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39481" stop="38978"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKTKFEMIQSLTLISSSPFPFPLHQSSNSADAAIQSNRYSLFNGKSNRRGRICASAVAEAPMMMEKRSVSLYEILRVKRDASPKEIKAAYRNLAKLYHPDSASLPEESSDGRNFIEIHDAYVTLSDPSARALYDLKLSVGSRRRGFARSVDGFRIYPTRRWETDQCW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="42099" PGL_stop="41358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42099" e_stop="41358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42099" e_stop="41358" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42099" stop="41358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584197" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATTTTCTTCCTTCTTCTCACTCCACTGAAAATATCATTTTCCGATGGTTCAATCCCTAACACTACCGGCCGGAAATACTTTCCGTTTTTCTCTACACAACCTTCCTTCTTCCACAGCCGGTTTCAGATCCGGAGTCACATTTCCCCGAAGGAATAATCGAACAGCAGCGGTATATGCCGCCGCCGTTGCGGAAGCACCGCCGGAATTGCAAAGGAGAACACCGGCGAGTCTCTACGATGTACTAAGGGTAAAATCAAATGCGTCACCCAAAGAGATAAAAACAGCTTACCGGAATTTAGCTAAGCTATACCATCCCGATGCTGCGTCTCTGTCGGAGGAATCTTCCGACGGACGGCATTTCATTGAGATTCACGAAGCTTATGCTACGTTATCAGATCCTGTTTCTAGAGATCTCTATGATCTCAAGCTAAACATGAGCTCCGGCCGACGAGGTTTTGGGAGCTCCGGCGATGGAATTCGTAGGAATGGGTCAGAGTTTTACCCGACCCGAAGGTGGGAAACGGATCAGTGTTGGTGACGTCAGATGATTAGGATTTAGGGGACCCACTTTGCCGCGTTAACACTGTATATATCCTGTAATTTTTTTTCAATGGAATTTAAAAAAAAACAGGTCTTGTTTGAGGATAATGAGTAAAATGTATATTTGTCAATATTATCTCTTATTCATAATAAATTAGGTTAATTCTTTTTAAAAAATGAGTAAGGTGAATTATGATAA</gDNA_template>
            <first_frame> T  I  F  F  L  L  L  T  P  L  K  I  S  F  S  D  G  S  I  P  N  T  T  G  R  K  Y  F  P  F  F  S  T  Q  P  S  F  F  H  S  R  F  Q  I  R  S  H  I  S  P  K  E  *  S  N  S  S  G  I  C  R  R  R  C  G  S  T  A  G  I  A  K  E  N  T  G  E  S  L  R  C  T  K  G  K  I  K  C  V  T  Q  R  D  K  N  S  L  P  E  F  S  *  A  I  P  S  R  C  C  V  S  V  G  G  I  F  R  R  T  A  F  H  *  D  S  R  S  L  C  Y  V  I  R  S  C  F  *  R  S  L  *  S  Q  A  K  H  E  L  R  P  T  R  F  W  E  L  R  R  W  N  S  *  E  W  V  R  V  L  P  D  P  K  V  G  N  G  S  V  L  V  T  S  D  D  *  D  L  G  D  P  L  C  R  V  N  T  V  Y  I  L  *  F  F  F  N  G  I  *  K  K  T  G  L  V  *  G  *  *  V  K  C  I  F  V  N  I  I  S  Y  S  *  *  I  R  L  I  L  F  K  K  *  V  R  *  I  M  I  </first_frame>
            <second_frame>  Q  F  S  S  F  F  S  L  H  *  K  Y  H  F  P  M  V  Q  S  L  T  L  P  A  G  N  T  F  R  F  S  L  H  N  L  P  S  S  T  A  G  F  R  S  G  V  T  F  P  R  R  N  N  R  T  A  A  V  Y  A  A  A  V  A  E  A  P  P  E  L  Q  R  R  T  P  A  S  L  Y  D  V  L  R  V  K  S  N  A  S  P  K  E  I  K  T  A  Y  R  N  L  A  K  L  Y  H  P  D  A  A  S  L  S  E  E  S  S  D  G  R  H  F  I  E  I  H  E  A  Y  A  T  L  S  D  P  V  S  R  D  L  Y  D  L  K  L  N  M  S  S  G  R  R  G  F  G  S  S  G  D  G  I  R  R  N  G  S  E  F  Y  P  T  R  R  W  E  T  D  Q  C  W  *  R  Q  M  I  R  I  *  G  T  H  F  A  A  L  T  L  Y  I  S  C  N  F  F  S  M  E  F  K  K  K  Q  V  L  F  E  D  N  E  *  N  V  Y  L  S  I  L  S  L  I  H  N  K  L  G  *  F  F  L  K  N  E  *  G  E  L  *  * </second_frame>
            <third_frame>   N  F  L  P  S  S  H  S  T  E  N  I  I  F  R  W  F  N  P  *  H  Y  R  P  E  I  L  S  V  F  L  Y  T  T  F  L  L  P  Q  P  V  S  D  P  E  S  H  F  P  E  G  I  I  E  Q  Q  R  Y  M  P  P  P  L  R  K  H  R  R  N  C  K  G  E  H  R  R  V  S  T  M  Y  *  G  *  N  Q  M  R  H  P  K  R  *  K  Q  L  T  G  I  *  L  S  Y  T  I  P  M  L  R  L  C  R  R  N  L  P  T  D  G  I  S  L  R  F  T  K  L  M  L  R  Y  Q  I  L  F  L  E  I  S  M  I  S  S  *  T  *  A  P  A  D  E  V  L  G  A  P  A  M  E  F  V  G  M  G  Q  S  F  T  R  P  E  G  G  K  R  I  S  V  G  D  V  R  *  L  G  F  R  G  P  T  L  P  R  *  H  C  I  Y  P  V  I  F  F  Q  W  N  L  K  K  N  R  S  C  L  R  I  M  S  K  M  Y  I  C  Q  Y  Y  L  L  F  I  I  N  *  V  N  S  F  *  K  M  S  K  V  N  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42068" stop="41559"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYHFPMVQSLTLPAGNTFRFSLHNLPSSTAGFRSGVTFPRRNNRTAAVYAAAVAEAPPELQRRTPASLYDVLRVKSNASPKEIKTAYRNLAKLYHPDAASLSEESSDGRHFIEIHEAYATLSDPVSRDLYDLKLNMSSGRRGFGSSGDGIRRNGSEFYPTRRWETDQCW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="46288" PGL_stop="51092"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46288" e_stop="46664"/>
            <exon e_start="47416" e_stop="47666"/>
            <exon e_start="47760" e_stop="47850"/>
            <exon e_start="48273" e_stop="48321"/>
            <exon e_start="48412" e_stop="48503"/>
            <exon e_start="48588" e_stop="48695"/>
            <exon e_start="48780" e_stop="48914"/>
            <exon e_start="49001" e_stop="49411"/>
            <exon e_start="49543" e_stop="49684"/>
            <exon e_start="49778" e_stop="49845"/>
            <exon e_start="49939" e_stop="50073"/>
            <exon e_start="50150" e_stop="50367"/>
            <exon e_start="50459" e_stop="51092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.171" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.861" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46288" e_stop="46664" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.992">
            <gDNA_intron_boundary i_start="46665" i_stop="47415" i_length="751"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47416" e_stop="47666" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.171" acc_prob="0.993">
            <gDNA_intron_boundary i_start="47667" i_stop="47759" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47760" e_stop="47850" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="47851" i_stop="48272" i_length="422"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48273" e_stop="48321" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48322" i_stop="48411" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48412" e_stop="48503" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.971">
            <gDNA_intron_boundary i_start="48504" i_stop="48587" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48588" e_stop="48695" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="48696" i_stop="48779" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="48780" e_stop="48914" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.932">
            <gDNA_intron_boundary i_start="48915" i_stop="49000" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="49001" e_stop="49411" e_length="411"/>
          </exon>
          <intron i_serial="8" don_prob="0.914" acc_prob="0.982">
            <gDNA_intron_boundary i_start="49412" i_stop="49542" i_length="131"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="49543" e_stop="49684" e_length="142"/>
          </exon>
          <intron i_serial="9" don_prob="0.988" acc_prob="0.979">
            <gDNA_intron_boundary i_start="49685" i_stop="49777" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="49778" e_stop="49845" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.947" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49846" i_stop="49938" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="49939" e_stop="50073" e_length="135"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="50074" i_stop="50149" i_length="76"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="50150" e_stop="50367" e_length="218"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.861">
            <gDNA_intron_boundary i_start="50368" i_stop="50458" i_length="91"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="50459" e_stop="51092" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46288" stop="46664"/>
              <exon start="47416" stop="47666"/>
              <exon start="47760" stop="47850"/>
              <exon start="48273" stop="48321"/>
              <exon start="48412" stop="48503"/>
              <exon start="48588" stop="48695"/>
              <exon start="48780" stop="48914"/>
              <exon start="49001" stop="49411"/>
              <exon start="49543" stop="49684"/>
              <exon start="49778" stop="49845"/>
              <exon start="49939" stop="50073"/>
              <exon start="50150" stop="50367"/>
              <exon start="50459" stop="51092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46338" stop="46664"/>
              <exon start="47416" stop="47434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCATTATATTAACCTCCCAAGCTTTTCTTTTCTCAGCTCTCAAAATTTAATTGCTATACAAGTTTTGATTTTGTCATTGTATATTCCTTGTGTTTTTTTTTTTTTGGTTTTAGAAAAGATAAAGATAATATTTTTTTTTTCATTTGGGTGTTTTCTTGTTTATTTGGTTATAGAAAGAAAAAAGATGACAGTAGGAGCAGGAATTTGTGTGGCTGAAAGAAAGCTTAATGTATTGGGGCAAAGCATTCTAAGTGATGTTGATGAAAATATTATTGTTACTCAGCCAAATGGTAAAGCTTTTACTAATGGGGCATTTCTTGGTGTTAATTCAGACAGAATTGGTAGTCATAGAGTCTTCCCTATTGGCAAACTACA : AGGATTGAGATTTATGTGTGGTTTCCGGTTCAAGTTATGGTGGATGACACAGAGAATGGGTACATCTGGCCAAGATATACCATTCGAGACTCAGTTTTTGATTGTAGAAGGAAATGATGGTTCAAATTTTGATCAAGACAACCAGCAAAATTCAGCATTGTATGTTGTTTTCTTGCCTATTCTAGAAGGTGATTTTAGGGCCGTTCTTCAAGGGAATTCAAACGATGAGTTAGAGATATGTTTGGAAAGTG : GAGATCCTGCTGTGCAAGATTTCGAGGGAAGCCATTTGGTTTACGTAGCAGCTGGACCAGACCCTTTTGATGTCATCACTAATGCTGTCAA : GACGGTGGAGAGGCATTTACAGACATTTTGTCACCGTGATAGAAAGAAG : ATGCCAGACATGTTGAACTGGTTCGGATGGTGCACGTGGGATGCTTTCTATACTACCGTTACTTCAGAGGGAGTGAAGCAAGGGTTAGAGAG : TTTGGAGAAAGGAGGTATTCCCCCAAAGTTTGTACTCATTGATGATGGATGGCAATCAGTGAGTATGGATCCCGATGGTATCGAATCCATTGCTGATAACCATGCAAA : CTTTGCTAACAGGTTAACTCATATCAAAGAGAACCATAAGTTTCAGAAAAATGGAAAAGAAGGTCATAGGGTTAACGATCCTGCAATGGGACTTCGACATGTTGTTACCAATATCAAAGACCAACACAATTTGAA : GTATGTGTACATGTGGCATGCACTTGCTGGTTACTGGGGCGGTGTGAGACCCGGGGTCCCTGGGATGGAACACTATGAATCCAAGTTATCTTTCCCAGTTTCATCTCCCGGGACTGAGTCACAGGAACCTGATGATGCTTTGAGCAGCTTGATAAAGAACGGTCTTGGTCTAGTGAACCCTGAGAAAGTTTTATACTTCTATAATGAACTGCACTCATACCTTGCTTCTGCGGGTATAGATGGGGTTAAAGTAGATGTTCAGAACATCCTTGAAACACTTGGAGCTGGTCATGGTGGAAGGGTAAAACTCGCAAGGAAGTATCATCAAGCATTAGAGGCATCTATTGCTCGAAATTTTCCTGATAATGGAATTATTTCATGCATGAGCCATAGTAATGATAGTTTGTTCAG : TGCAAAGCGTTCAGCTGTAATTAGAGCATCGGATGATTTCTGGCCACGAGACCCTGCATCACACACAATTCACATAGCATCAGTGGCGTACAACACCATTTTCCTTGGTGAATTCATGCAGCCTGATTGGGATATGTTTCAC : AGTGTGCATCCCATGGCTGAATACCACGGAGCTGCACGAGCTGTTGGAGGCTGTGCTATTTACGTTAG : TGACAAGCCTGGACAGCACGACTTTAATCTTCTGAAGAAGCTTGTACTTCCAGATGGTTCCATATTACGCGCCAAACTTCCAGGAAGGCCAACTAGAGACTGCTTGTTTTCTGATCCAGCAAGAGACGGGATAAG : TCTTTTAAAAATCTGGAATCTCAACGATTTCAATGGAGTAGTCGGTGTATTCAACTGTCAAGGTGCTGGATGGTGTAAGGTTGGCAAGAAGAATCTAATCCACGATTGTCAACCAGGGACAATAACTGGGATTGTTCGTGCTAATGATGTCAATTACTTACCAAGGATTGCTCATGATGGATGGACCGGCGATGCCATTCTGTATTCTCATCTTCATA : GGGAATTGATCAATCTTCCTAAAAATACTTCGATTCCAATCACTCTAAACGCGAGAGAATATGAAGTCTTTACAGTTGTTCCAATCAATGAAATGTCTACAGGATCAAGATTTGCTCCGATTGGTCTTGTGAATATGTTCAATTCAGGAGGAGCAATCAAAGAGGTGAAATATGAAACAGAGGGAAAATGTGGACTAGTTTCCATGAAGGTTCGCGGATGTGGAACGTTTGGAGCTTATTCATCTGGGAAGCCTAAACGAATTCATGTTGACAACGAAGAAGTACAGTTTGATTACGACGAATCCTCTGGATTGTTCACCATTAACATTACAGTTCCTGATCAAGAATTATACCTTTGGGATGTTAAAGTTGAAACGTGAAAACTGCAAGATGACCATGAGTTGAAGACTTCTCATAGTTTTTAAAATTTAGACACTGTTATTTAAATTTTATCGCACAAGGACGAAAATTCTCAATTTAGTCTATTGTTATCCTATTAGTACTTAAAAAATCATATTCTTTTCTTTATAGTAATTCTACGCTATGTATAGACTTATTATTTAATGTGTGATCTAGATACATATATTACATTGGATAAACAATGAAACTGTACTCTATAACGCCACGATAACTT</gDNA_template>
            <first_frame> G  H  Y  I  N  L  P  S  F  S  F  L  S  S  Q  N  L  I  A  I  Q  V  L  I  L  S  L  Y  I  P  C  V  F  F  F  L  V  L  E  K  I  K  I  I  F  F  F  S  F  G  C  F  L  V  Y  L  V  I  E  R  K  K  M  T  V  G  A  G  I  C  V  A  E  R  K  L  N  V  L  G  Q  S  I  L  S  D  V  D  E  N  I  I  V  T  Q  P  N  G  K  A  F  T  N  G  A  F  L  G  V  N  S  D  R  I  G  S  H  R  V  F  P  I  G  K  L  Q :   G  L  R  F  M  C  G  F  R  F  K  L  W  W  M  T  Q  R  M  G  T  S  G  Q  D  I  P  F  E  T  Q  F  L  I  V  E  G  N  D  G  S  N  F  D  Q  D  N  Q  Q  N  S  A  L  Y  V  V  F  L  P  I  L  E  G  D  F  R  A  V  L  Q  G  N  S  N  D  E  L  E  I  C  L  E  S   : G  D  P  A  V  Q  D  F  E  G  S  H  L  V  Y  V  A  A  G  P  D  P  F  D  V  I  T  N  A  V  K :   T  V  E  R  H  L  Q  T  F  C  H  R  D  R  K  K  :  M  P  D  M  L  N  W  F  G  W  C  T  W  D  A  F  Y  T  T  V  T  S  E  G  V  K  Q  G  L  E  S :   L  E  K  G  G  I  P  P  K  F  V  L  I  D  D  G  W  Q  S  V  S  M  D  P  D  G  I  E  S  I  A  D  N  H  A  N :   F  A  N  R  L  T  H  I  K  E  N  H  K  F  Q  K  N  G  K  E  G  H  R  V  N  D  P  A  M  G  L  R  H  V  V  T  N  I  K  D  Q  H  N  L  K :   Y  V  Y  M  W  H  A  L  A  G  Y  W  G  G  V  R  P  G  V  P  G  M  E  H  Y  E  S  K  L  S  F  P  V  S  S  P  G  T  E  S  Q  E  P  D  D  A  L  S  S  L  I  K  N  G  L  G  L  V  N  P  E  K  V  L  Y  F  Y  N  E  L  H  S  Y  L  A  S  A  G  I  D  G  V  K  V  D  V  Q  N  I  L  E  T  L  G  A  G  H  G  G  R  V  K  L  A  R  K  Y  H  Q  A  L  E  A  S  I  A  R  N  F  P  D  N  G  I  I  S  C  M  S  H  S  N  D  S  L  F  S :   A  K  R  S  A  V  I  R  A  S  D  D  F  W  P  R  D  P  A  S  H  T  I  H  I  A  S  V  A  Y  N  T  I  F  L  G  E  F  M  Q  P  D  W  D  M  F  H  :  S  V  H  P  M  A  E  Y  H  G  A  A  R  A  V  G  G  C  A  I  Y  V  S :   D  K  P  G  Q  H  D  F  N  L  L  K  K  L  V  L  P  D  G  S  I  L  R  A  K  L  P  G  R  P  T  R  D  C  L  F  S  D  P  A  R  D  G  I  S :   L  L  K  I  W  N  L  N  D  F  N  G  V  V  G  V  F  N  C  Q  G  A  G  W  C  K  V  G  K  K  N  L  I  H  D  C  Q  P  G  T  I  T  G  I  V  R  A  N  D  V  N  Y  L  P  R  I  A  H  D  G  W  T  G  D  A  I  L  Y  S  H  L  H   : R  E  L  I  N  L  P  K  N  T  S  I  P  I  T  L  N  A  R  E  Y  E  V  F  T  V  V  P  I  N  E  M  S  T  G  S  R  F  A  P  I  G  L  V  N  M  F  N  S  G  G  A  I  K  E  V  K  Y  E  T  E  G  K  C  G  L  V  S  M  K  V  R  G  C  G  T  F  G  A  Y  S  S  G  K  P  K  R  I  H  V  D  N  E  E  V  Q  F  D  Y  D  E  S  S  G  L  F  T  I  N  I  T  V  P  D  Q  E  L  Y  L  W  D  V  K  V  E  T  *  K  L  Q  D  D  H  E  L  K  T  S  H  S  F  *  N  L  D  T  V  I  *  I  L  S  H  K  D  E  N  S  Q  F  S  L  L  L  S  Y  *  Y  L  K  N  H  I  L  F  F  I  V  I  L  R  Y  V  *  T  Y  Y  L  M  C  D  L  D  T  Y  I  T  L  D  K  Q  *  N  C  T  L  *  R  H  D  N   </first_frame>
            <second_frame>  A  I  I  L  T  S  Q  A  F  L  F  S  A  L  K  I  *  L  L  Y  K  F  *  F  C  H  C  I  F  L  V  F  F  F  F  W  F  *  K  R  *  R  *  Y  F  F  F  H  L  G  V  F  L  F  I  W  L  *  K  E  K  R  *  Q  *  E  Q  E  F  V  W  L  K  E  S  L  M  Y  W  G  K  A  F  *  V  M  L  M  K  I  L  L  L  L  S  Q  M  V  K  L  L  L  M  G  H  F  L  V  L  I  Q  T  E  L  V  V  I  E  S  S  L  L  A  N  Y   : K  D  *  D  L  C  V  V  S  G  S  S  Y  G  G  *  H  R  E  W  V  H  L  A  K  I  Y  H  S  R  L  S  F  *  L  *  K  E  M  M  V  Q  I  L  I  K  T  T  S  K  I  Q  H  C  M  L  F  S  C  L  F  *  K  V  I  L  G  P  F  F  K  G  I  Q  T  M  S  *  R  Y  V  W  K  V  :  E  I  L  L  C  K  I  S  R  E  A  I  W  F  T  *  Q  L  D  Q  T  L  L  M  S  S  L  M  L  S   : R  R  W  R  G  I  Y  R  H  F  V  T  V  I  E  R  R :   C  Q  T  C  *  T  G  S  D  G  A  R  G  M  L  S  I  L  P  L  L  Q  R  E  *  S  K  G  *  R   : V  W  R  K  E  V  F  P  Q  S  L  Y  S  L  M  M  D  G  N  Q  *  V  W  I  P  M  V  S  N  P  L  L  I  T  M  Q   : T  L  L  T  G  *  L  I  S  K  R  T  I  S  F  R  K  M  E  K  K  V  I  G  L  T  I  L  Q  W  D  F  D  M  L  L  P  I  S  K  T  N  T  I  *   : S  M  C  T  C  G  M  H  L  L  V  T  G  A  V  *  D  P  G  S  L  G  W  N  T  M  N  P  S  Y  L  S  Q  F  H  L  P  G  L  S  H  R  N  L  M  M  L  *  A  A  *  *  R  T  V  L  V  *  *  T  L  R  K  F  Y  T  S  I  M  N  C  T  H  T  L  L  L  R  V  *  M  G  L  K  *  M  F  R  T  S  L  K  H  L  E  L  V  M  V  E  G  *  N  S  Q  G  S  I  I  K  H  *  R  H  L  L  L  E  I  F  L  I  M  E  L  F  H  A  *  A  I  V  M  I  V  C  S   : V  Q  S  V  Q  L  *  L  E  H  R  M  I  S  G  H  E  T  L  H  H  T  Q  F  T  *  H  Q  W  R  T  T  P  F  S  L  V  N  S  C  S  L  I  G  I  C  F  T :   V  C  I  P  W  L  N  T  T  E  L  H  E  L  L  E  A  V  L  F  T  L   : V  T  S  L  D  S  T  T  L  I  F  *  R  S  L  Y  F  Q  M  V  P  Y  Y  A  P  N  F  Q  E  G  Q  L  E  T  A  C  F  L  I  Q  Q  E  T  G  *   : V  F  *  K  S  G  I  S  T  I  S  M  E  *  S  V  Y  S  T  V  K  V  L  D  G  V  R  L  A  R  R  I  *  S  T  I  V  N  Q  G  Q  *  L  G  L  F  V  L  M  M  S  I  T  Y  Q  G  L  L  M  M  D  G  P  A  M  P  F  C  I  L  I  F  I  :  G  N  *  S  I  F  L  K  I  L  R  F  Q  S  L  *  T  R  E  N  M  K  S  L  Q  L  F  Q  S  M  K  C  L  Q  D  Q  D  L  L  R  L  V  L  *  I  C  S  I  Q  E  E  Q  S  K  R  *  N  M  K  Q  R  E  N  V  D  *  F  P  *  R  F  A  D  V  E  R  L  E  L  I  H  L  G  S  L  N  E  F  M  L  T  T  K  K  Y  S  L  I  T  T  N  P  L  D  C  S  P  L  T  L  Q  F  L  I  K  N  Y  T  F  G  M  L  K  L  K  R  E  N  C  K  M  T  M  S  *  R  L  L  I  V  F  K  I  *  T  L  L  F  K  F  Y  R  T  R  T  K  I  L  N  L  V  Y  C  Y  P  I  S  T  *  K  I  I  F  F  S  L  *  *  F  Y  A  M  Y  R  L  I  I  *  C  V  I  *  I  H  I  L  H  W  I  N  N  E  T  V  L  Y  N  A  T  I  T  </second_frame>
            <third_frame>   P  L  Y  *  P  P  K  L  F  F  S  Q  L  S  K  F  N  C  Y  T  S  F  D  F  V  I  V  Y  S  L  C  F  F  F  F  G  F  R  K  D  K  D  N  I  F  F  F  I  W  V  F  S  C  L  F  G  Y  R  K  K  K  D  D  S  R  S  R  N  L  C  G  *  K  K  A  *  C  I  G  A  K  H  S  K  *  C  *  *  K  Y  Y  C  Y  S  A  K  W  *  S  F  Y  *  W  G  I  S  W  C  *  F  R  Q  N  W  *  S  *  S  L  P  Y  W  Q  T  T  :  R  I  E  I  Y  V  W  F  P  V  Q  V  M  V  D  D  T  E  N  G  Y  I  W  P  R  Y  T  I  R  D  S  V  F  D  C  R  R  K  *  W  F  K  F  *  S  R  Q  P  A  K  F  S  I  V  C  C  F  L  A  Y  S  R  R  *  F  *  G  R  S  S  R  E  F  K  R  *  V  R  D  M  F  G  K  W :   R  S  C  C  A  R  F  R  G  K  P  F  G  L  R  S  S  W  T  R  P  F  *  C  H  H  *  C  C  Q  :  D  G  G  E  A  F  T  D  I  L  S  P  *  *  K  E   : D  A  R  H  V  E  L  V  R  M  V  H  V  G  C  F  L  Y  Y  R  Y  F  R  G  S  E  A  R  V  R  E  :  F  G  E  R  R  Y  S  P  K  V  C  T  H  *  *  W  M  A  I  S  E  Y  G  S  R  W  Y  R  I  H  C  *  *  P  C  K  :  L  C  *  Q  V  N  S  Y  Q  R  E  P  *  V  S  E  K  W  K  R  R  S  *  G  *  R  S  C  N  G  T  S  T  C  C  Y  Q  Y  Q  R  P  T  Q  F  E  :  V  C  V  H  V  A  C  T  C  W  L  L  G  R  C  E  T  R  G  P  W  D  G  T  L  *  I  Q  V  I  F  P  S  F  I  S  R  D  *  V  T  G  T  *  *  C  F  E  Q  L  D  K  E  R  S  W  S  S  E  P  *  E  S  F  I  L  L  *  *  T  A  L  I  P  C  F  C  G  Y  R  W  G  *  S  R  C  S  E  H  P  *  N  T  W  S  W  S  W  W  K  G  K  T  R  K  E  V  S  S  S  I  R  G  I  Y  C  S  K  F  S  *  *  W  N  Y  F  M  H  E  P  *  *  *  *  F  V  Q  :  C  K  A  F  S  C  N  *  S  I  G  *  F  L  A  T  R  P  C  I  T  H  N  S  H  S  I  S  G  V  Q  H  H  F  P  W  *  I  H  A  A  *  L  G  Y  V  S   : Q  C  A  S  H  G  *  I  P  R  S  C  T  S  C  W  R  L  C  Y  L  R  *  :  *  Q  A  W  T  A  R  L  *  S  S  E  E  A  C  T  S  R  W  F  H  I  T  R  Q  T  S  R  K  A  N  *  R  L  L  V  F  *  S  S  K  R  R  D  K  :  S  F  K  N  L  E  S  Q  R  F  Q  W  S  S  R  C  I  Q  L  S  R  C  W  M  V  *  G  W  Q  E  E  S  N  P  R  L  S  T  R  D  N  N  W  D  C  S  C  *  *  C  Q  L  L  T  K  D  C  S  *  W  M  D  R  R  C  H  S  V  F  S  S  S  * :   G  I  D  Q  S  S  *  K  Y  F  D  S  N  H  S  K  R  E  R  I  *  S  L  Y  S  C  S  N  Q  *  N  V  Y  R  I  K  I  C  S  D  W  S  C  E  Y  V  Q  F  R  R  S  N  Q  R  G  E  I  *  N  R  G  K  M  W  T  S  F  H  E  G  S  R  M  W  N  V  W  S  L  F  I  W  E  A  *  T  N  S  C  *  Q  R  R  S  T  V  *  L  R  R  I  L  W  I  V  H  H  *  H  Y  S  S  *  S  R  I  I  P  L  G  C  *  S  *  N  V  K  T  A  R  *  P  *  V  E  D  F  S  *  F  L  K  F  R  H  C  Y  L  N  F  I  A  Q  G  R  K  F  S  I  *  S  I  V  I  L  L  V  L  K  K  S  Y  S  F  L  Y  S  N  S  T  L  C  I  D  L  L  F  N  V  *  S  R  Y  I  Y  Y  I  G  *  T  M  K  L  Y  S  I  T  P  R  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46288" stop="46664"/>
                    <exon start="47416" stop="47666"/>
                    <exon start="47760" stop="47850"/>
                    <exon start="48273" stop="48321"/>
                    <exon start="48412" stop="48503"/>
                    <exon start="48588" stop="48695"/>
                    <exon start="48780" stop="48914"/>
                    <exon start="49001" stop="49411"/>
                    <exon start="49543" stop="49684"/>
                    <exon start="49778" stop="49845"/>
                    <exon start="49939" stop="50073"/>
                    <exon start="50150" stop="50367"/>
                    <exon start="50459" stop="50838"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2454</number_coding_nucleotides>
                  <number_encoded_amino_acids>818</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GHYINLPSFSFLSSQNLIAIQVLILSLYIPCVFFFLVLEKIKIIFFFSFGCFLVYLVIERKKMTVGAGICVAERKLNVLGQSILSDVDENIIVTQPNGKAFTNGAFLGVNSDRIGSHRVFPIGKLQGLRFMCGFRFKLWWMTQRMGTSGQDIPFETQFLIVEGNDGSNFDQDNQQNSALYVVFLPILEGDFRAVLQGNSNDELEICLESGDPAVQDFEGSHLVYVAAGPDPFDVITNAVKTVERHLQTFCHRDRKKMPDMLNWFGWCTWDAFYTTVTSEGVKQGLESLEKGGIPPKFVLIDDGWQSVSMDPDGIESIADNHANFANRLTHIKENHKFQKNGKEGHRVNDPAMGLRHVVTNIKDQHNLKYVYMWHALAGYWGGVRPGVPGMEHYESKLSFPVSSPGTESQEPDDALSSLIKNGLGLVNPEKVLYFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASIARNFPDNGIISCMSHSNDSLFSAKRSAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSVHPMAEYHGAARAVGGCAIYVSDKPGQHDFNLLKKLVLPDGSILRAKLPGRPTRDCLFSDPARDGISLLKIWNLNDFNGVVGVFNCQGAGWCKVGKKNLIHDCQPGTITGIVRANDVNYLPRIAHDGWTGDAILYSHLHRELINLPKNTSIPITLNAREYEVFTVVPINEMSTGSRFAPIGLVNMFNSGGAIKEVKYETEGKCGLVSMKVRGCGTFGAYSSGKPKRIHVDNEEVQFDYDESSGLFTINITVPDQELYLWDVKVET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="51221" PGL_stop="52062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51221" e_stop="52062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="51221" e_stop="52062" e_length="842"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51221" stop="52062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAAAAAAAATTATTATGGCTGAAAACAGGGAATTGATGGAGGTTAATCCGACCCGAAAGACGAAGATTTGGGCAGCAATAGCTGGAATTGCAATTGAAGCCCCAATTTTGGGGTTCATGTGTTTTAGTTTTCTCACTTCAATTATACTTTTGGTAGTAACTTCTCCGTTGCTAGTTATATTTAGTCCTCTCTTAATTGGTGCTGCTGCGGTGCTGGGAGTTGCTATGGCGGGATTTGGGGTGGCCGGAGTTACGGCGGGTTTAGGATTGTCTTCGTTTGTTTTGGTGTATAGGTCGGTAATTAAAGGTAGAATTACCAGCGGAGAGTATGGCGGCGGTGGTGCTGATGAAGCGCCGGTTGTTGTGGATAAAATGATTGAACCGGAGGAGGAGCGTGACAGAGAAGTAGCCGGTACTGGAGATAAAACAGATGTGCAGGCGCAAGAGGGCAACCCTAGTTCAGAGGCAGTTCATGTAGATAAAATAGTTGAGTTATTTGAGTCTTTAAAGGAACATCCACATGATCAAAATGAAACAGCTACTATTGTCCACATAGTTACTGTAGAGGTTGATGATGATGATGATGATCAACACAAAATCAGTTCTGGTGACTATTTGCAGCAAAATGTACCAAGACAGATCCCACTAGAGACTTGAATCAATCAAGAAAATCTATATATGTAGGTTCAGAAGTGGCTAGTTTATGCTTTTTACTGAGTTGCAGGTTATGATTTGTCTTCATTTCTTAGTTTTTGTGGCACTGTGTGTATAGACTTTTTGTCATTTTACTTCTTCTCTACAGTATGAACATATTTGTTGCTGTTTTTAAAACATGTTTTT</gDNA_template>
            <first_frame> R  K  K  K  L  L  W  L  K  T  G  N  *  W  R  L  I  R  P  E  R  R  R  F  G  Q  Q  *  L  E  L  Q  L  K  P  Q  F  W  G  S  C  V  L  V  F  S  L  Q  L  Y  F  W  *  *  L  L  R  C  *  L  Y  L  V  L  S  *  L  V  L  L  R  C  W  E  L  L  W  R  D  L  G  W  P  E  L  R  R  V  *  D  C  L  R  L  F  W  C  I  G  R  *  L  K  V  E  L  P  A  E  S  M  A  A  V  V  L  M  K  R  R  L  L  W  I  K  *  L  N  R  R  R  S  V  T  E  K  *  P  V  L  E  I  K  Q  M  C  R  R  K  R  A  T  L  V  Q  R  Q  F  M  *  I  K  *  L  S  Y  L  S  L  *  R  N  I  H  M  I  K  M  K  Q  L  L  L  S  T  *  L  L  *  R  L  M  M  M  M  M  I  N  T  K  S  V  L  V  T  I  C  S  K  M  Y  Q  D  R  S  H  *  R  L  E  S  I  K  K  I  Y  I  C  R  F  R  S  G  *  F  M  L  F  T  E  L  Q  V  M  I  C  L  H  F  L  V  F  V  A  L  C  V  *  T  F  C  H  F  T  S  S  L  Q  Y  E  H  I  C  C  C  F  *  N  M  F   </first_frame>
            <second_frame>  E  K  K  N  Y  Y  G  *  K  Q  G  I  D  G  G  *  S  D  P  K  D  E  D  L  G  S  N  S  W  N  C  N  *  S  P  N  F  G  V  H  V  F  *  F  S  H  F  N  Y  T  F  G  S  N  F  S  V  A  S  Y  I  *  S  S  L  N  W  C  C  C  G  A  G  S  C  Y  G  G  I  W  G  G  R  S  Y  G  G  F  R  I  V  F  V  C  F  G  V  *  V  G  N  *  R  *  N  Y  Q  R  R  V  W  R  R  W  C  *  *  S  A  G  C  C  G  *  N  D  *  T  G  G  G  A  *  Q  R  S  S  R  Y  W  R  *  N  R  C  A  G  A  R  G  Q  P  *  F  R  G  S  S  C  R  *  N  S  *  V  I  *  V  F  K  G  T  S  T  *  S  K  *  N  S  Y  Y  C  P  H  S  Y  C  R  G  *  *  *  *  *  *  S  T  Q  N  Q  F  W  *  L  F  A  A  K  C  T  K  T  D  P  T  R  D  L  N  Q  S  R  K  S  I  Y  V  G  S  E  V  A  S  L  C  F  L  L  S  C  R  L  *  F  V  F  I  S  *  F  L  W  H  C  V  Y  R  L  F  V  I  L  L  L  L  Y  S  M  N  I  F  V  A  V  F  K  T  C  F  </second_frame>
            <third_frame>   K  K  K  I  I  M  A  E  N  R  E  L  M  E  V  N  P  T  R  K  T  K  I  W  A  A  I  A  G  I  A  I  E  A  P  I  L  G  F  M  C  F  S  F  L  T  S  I  I  L  L  V  V  T  S  P  L  L  V  I  F  S  P  L  L  I  G  A  A  A  V  L  G  V  A  M  A  G  F  G  V  A  G  V  T  A  G  L  G  L  S  S  F  V  L  V  Y  R  S  V  I  K  G  R  I  T  S  G  E  Y  G  G  G  G  A  D  E  A  P  V  V  V  D  K  M  I  E  P  E  E  E  R  D  R  E  V  A  G  T  G  D  K  T  D  V  Q  A  Q  E  G  N  P  S  S  E  A  V  H  V  D  K  I  V  E  L  F  E  S  L  K  E  H  P  H  D  Q  N  E  T  A  T  I  V  H  I  V  T  V  E  V  D  D  D  D  D  D  Q  H  K  I  S  S  G  D  Y  L  Q  Q  N  V  P  R  Q  I  P  L  E  T  *  I  N  Q  E  N  L  Y  M  *  V  Q  K  W  L  V  Y  A  F  Y  *  V  A  G  Y  D  L  S  S  F  L  S  F  C  G  T  V  C  I  D  F  L  S  F  Y  F  F  S  T  V  *  T  Y  L  L  L  F  L  K  H  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51223" stop="51879"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKIIMAENRELMEVNPTRKTKIWAAIAGIAIEAPILGFMCFSFLTSIILLVVTSPLLVIFSPLLIGAAAVLGVAMAGFGVAGVTAGLGLSSFVLVYRSVIKGRITSGEYGGGGADEAPVVVDKMIEPEEERDREVAGTGDKTDVQAQEGNPSSEAVHVDKIVELFESLKEHPHDQNETATIVHIVTVEVDDDDDDQHKISSGDYLQQNVPRQIPLET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="55311" PGL_stop="55958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55311" e_stop="55958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55311" e_stop="55958" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55311" stop="55958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600632" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAATAAAAAAAATCTACTAAGAAGAACATAAAATATAAATATAATCATGTTATTGAGAACTCAAGTGGCTTTAAGAAATTGAGATTTACTGTATCATAATTGAAACAATGTAAAGATTATGGATTATTTTACATACTCTAGATTTTTGTTGACCTTATTGTGACATTACAGGCAGTCTAGTGGTCCCATGGTCTAGTGATTAGGACATTGGATACTGAATCCAGTAACCCGAGTTCAAATCTAAGTGGGACCTTTAGTTTTGGGTCTATCAGAAACAACCTCTACCCAAAAAAGATATGAGTAAGGTCTGCATACATCCTACCCTCTCTGGACCCCACTAGTGGGATTACACTGAGTGTGTTGTTGGTGTTACTTGACAGTTCCAATCACATCGACCAAATTTGTGATTTTCCATTGATTTTAATATCTTTTTGTTTTCATACTAGCATCCAAAAAAACCAAACATTGATTTGAACCTAAGTTTGGCTTGACCTGTTAGGCTTTGAAAAAGACATGCACATGGAGTCTGAGAATGTAAATATATTATGTACATAGTGACGAGATCCAAAAATGGGTAAAAGTTACTGGACTCTATGTTTAAATAGTCATCCCCCCTTGTGAGTTGTGAAATGTCTATCTCATTG</gDNA_template>
            <first_frame> E  K  I  K  K  I  Y  *  E  E  H  K  I  *  I  *  S  C  Y  *  E  L  K  W  L  *  E  I  E  I  Y  C  I  I  I  E  T  M  *  R  L  W  I  I  L  H  T  L  D  F  C  *  P  Y  C  D  I  T  G  S  L  V  V  P  W  S  S  D  *  D  I  G  Y  *  I  Q  *  P  E  F  K  S  K  W  D  L  *  F  W  V  Y  Q  K  Q  P  L  P  K  K  D  M  S  K  V  C  I  H  P  T  L  S  G  P  H  *  W  D  Y  T  E  C  V  V  G  V  T  *  Q  F  Q  S  H  R  P  N  L  *  F  S  I  D  F  N  I  F  L  F  S  Y  *  H  P  K  K  P  N  I  D  L  N  L  S  L  A  *  P  V  R  L  *  K  R  H  A  H  G  V  *  E  C  K  Y  I  M  Y  I  V  T  R  S  K  N  G  *  K  L  L  D  S  M  F  K  *  S  S  P  L  V  S  C  E  M  S  I  S  L </first_frame>
            <second_frame>  K  K  *  K  K  S  T  K  K  N  I  K  Y  K  Y  N  H  V  I  E  N  S  S  G  F  K  K  L  R  F  T  V  S  *  L  K  Q  C  K  D  Y  G  L  F  Y  I  L  *  I  F  V  D  L  I  V  T  L  Q  A  V  *  W  S  H  G  L  V  I  R  T  L  D  T  E  S  S  N  P  S  S  N  L  S  G  T  F  S  F  G  S  I  R  N  N  L  Y  P  K  K  I  *  V  R  S  A  Y  I  L  P  S  L  D  P  T  S  G  I  T  L  S  V  L  L  V  L  L  D  S  S  N  H  I  D  Q  I  C  D  F  P  L  I  L  I  S  F  C  F  H  T  S  I  Q  K  N  Q  T  L  I  *  T  *  V  W  L  D  L  L  G  F  E  K  D  M  H  M  E  S  E  N  V  N  I  L  C  T  *  *  R  D  P  K  M  G  K  S  Y  W  T  L  C  L  N  S  H  P  P  L  *  V  V  K  C  L  S  H   </second_frame>
            <third_frame>   K  N  K  K  N  L  L  R  R  T  *  N  I  N  I  I  M  L  L  R  T  Q  V  A  L  R  N  *  D  L  L  Y  H  N  *  N  N  V  K  I  M  D  Y  F  T  Y  S  R  F  L  L  T  L  L  *  H  Y  R  Q  S  S  G  P  M  V  *  *  L  G  H  W  I  L  N  P  V  T  R  V  Q  I  *  V  G  P  L  V  L  G  L  S  E  T  T  S  T  Q  K  R  Y  E  *  G  L  H  T  S  Y  P  L  W  T  P  L  V  G  L  H  *  V  C  C  W  C  Y  L  T  V  P  I  T  S  T  K  F  V  I  F  H  *  F  *  Y  L  F  V  F  I  L  A  S  K  K  T  K  H  *  F  E  P  K  F  G  L  T  C  *  A  L  K  K  T  C  T  W  S  L  R  M  *  I  Y  Y  V  H  S  D  E  I  Q  K  W  V  K  V  T  G  L  Y  V  *  I  V  I  P  P  C  E  L  *  N  V  Y  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0019G22.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="56059" PGL_stop="57944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56059" e_stop="56772"/>
            <exon e_start="56908" e_stop="57001"/>
            <exon e_start="57117" e_stop="57444"/>
            <exon e_start="57600" e_stop="57733"/>
            <exon e_start="57866" e_stop="57944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.845" acc_prob="0.165" e_score="0.997"/>
          <exon-intron don_prob="0.921" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.520" e_score="0.985"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="56059" e_stop="56772" e_length="714"/>
          </exon>
          <intron i_serial="1" don_prob="0.845" acc_prob="0.165">
            <gDNA_intron_boundary i_start="56773" i_stop="56907" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56908" e_stop="57001" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57002" i_stop="57116" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57117" e_stop="57444" e_length="328"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.884">
            <gDNA_intron_boundary i_start="57445" i_stop="57599" i_length="155"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="57600" e_stop="57733" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.520">
            <gDNA_intron_boundary i_start="57734" i_stop="57865" i_length="132"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="57866" e_stop="57944" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56059" stop="56772"/>
              <exon start="56908" stop="57001"/>
              <exon start="57117" stop="57444"/>
              <exon start="57600" stop="57733"/>
              <exon start="57866" stop="57944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAACTACAGCCAAACATTTCTTTATAGAGGAAGTTCCATCATTGTTGACTAAATTTGTGCCTAACTCCAACAAAGACATTCTTTCCCCCCATCTTTTTCATTATATGATGACTTATGAGAACTTAGCACTACTACATGGTTCAATATAGTATATAGTGCTGTTGTTGTGAAGGGAGGAGTATTGTCTTTGAACGTTTCTACTTATAGGTGAAGGCTTTATGTAGTATCATTGAGCCACCTGCATATTTTCAAAGAGTTGCTTTAAGGTTTTTAGGGTCCGTGTCTAAGAATATATCAGTCGGATATGGAAGTTCAATGTTCTCTTGAACAAGAGAAATCTTCAGGCAAAGATGATGCAGATACAATTAGAACTGGTAAGTTTTAAGTTGTCTCAAAATTTTCTAGAGGGACTGAGTTTTATAACATTGACTAGGATTAAATCTAAGAAACAATAGTCGACGTGTATTTTCCTGCCAGGAACTTTGTGGACTGCAGTTGCGCACATCATTTCAGCTGTAATCGGAGCTGGTGTTCTATCTCTAGCCTGGTGTACAGCACAATTAGGATGGATTGCAGGGCCAATCACCATGCTTTGTTTTGCAGTTGTTACATACATATCTGCATCTCTCATATGTGATTGTTACAGGTCACCTGATCCCATAACAGGAACGCGAAATCCCTCTTACATTGATGCCGTTAGAGTTAATCTTG : GGAAGAAATGGACGTGGTTGTGTGGTTTGCTTCAGTATGTGAGCTTCTATGGGACTGGTATTGCTTATGTAATTACAAGTGCAACAAGTATGAG : ATAACATTATATCCATTATAGTAATGCCTAGCCTGCAAGAGACAGTGTATGCAATTCAAGCTGAATGAGATATGCTTCTGTTAAGTTATTCATCCGACCGAAAGTTTCTGCAGAGAAATTCAGAGATCAAATTGTTACCATAAAGGAGGAGAAAAAGCTGTTTGCCAGACTGGGACAAATAATTTCATGCTGATTTTTGGCATTATTCAGATAGTAACATCGCAGATACCAAATTTTCATAACATGGCATGGTTGTCTGTTGTTGCTGCGCTAATGTCATTTTGTTACTCTTTCATCGGATTGGGCCTTGGGTTCTCTAAAGTGATCG : ATAATAGGGGTATCAAGGGAAGCATTGTGGGAGTACCAACAAAGAGTGCTGCTCAGAAGATTTGGTTAGTTTTCCAGGCACTCGGAGACATTGCTTTTGCCTATCCTTATTCGATTATTCTCCTCGAGATACAG : AGCTCGGCTTGTTTGGAACTGAGGCATAGTTGTCGTCATGTATAGTTTTCCAAAAAAAATAATTCAAGATCAATATCGG</gDNA_template>
            <first_frame> K  E  L  Q  P  N  I  S  L  *  R  K  F  H  H  C  *  L  N  L  C  L  T  P  T  K  T  F  F  P  P  I  F  F  I  I  *  *  L  M  R  T  *  H  Y  Y  M  V  Q  Y  S  I  *  C  C  C  C  E  G  R  S  I  V  F  E  R  F  Y  L  *  V  K  A  L  C  S  I  I  E  P  P  A  Y  F  Q  R  V  A  L  R  F  L  G  S  V  S  K  N  I  S  V  G  Y  G  S  S  M  F  S  *  T  R  E  I  F  R  Q  R  *  C  R  Y  N  *  N  W  *  V  L  S  C  L  K  I  F  *  R  D  *  V  L  *  H  *  L  G  L  N  L  R  N  N  S  R  R  V  F  S  C  Q  E  L  C  G  L  Q  L  R  T  S  F  Q  L  *  S  E  L  V  F  Y  L  *  P  G  V  Q  H  N  *  D  G  L  Q  G  Q  S  P  C  F  V  L  Q  L  L  H  T  Y  L  H  L  S  Y  V  I  V  T  G  H  L  I  P  *  Q  E  R  E  I  P  L  T  L  M  P  L  E  L  I  L  :  G  R  N  G  R  G  C  V  V  C  F  S  M  *  A  S  M  G  L  V  L  L  M  *  L  Q  V  Q  Q  V  *   : D  N  I  I  S  I  I  V  M  P  S  L  Q  E  T  V  Y  A  I  Q  A  E  *  D  M  L  L  L  S  Y  S  S  D  R  K  F  L  Q  R  N  S  E  I  K  L  L  P  *  R  R  R  K  S  C  L  P  D  W  D  K  *  F  H  A  D  F  W  H  Y  S  D  S  N  I  A  D  T  K  F  S  *  H  G  M  V  V  C  C  C  C  A  N  V  I  L  L  L  F  H  R  I  G  P  W  V  L  *  S  D  R :   *  *  G  Y  Q  G  K  H  C  G  S  T  N  K  E  C  C  S  E  D  L  V  S  F  P  G  T  R  R  H  C  F  C  L  S  L  F  D  Y  S  P  R  D  T   : E  L  G  L  F  G  T  E  A  *  L  S  S  C  I  V  F  Q  K  K  *  F  K  I  N  I   </first_frame>
            <second_frame>  K  N  Y  S  Q  T  F  L  Y  R  G  S  S  I  I  V  D  *  I  C  A  *  L  Q  Q  R  H  S  F  P  P  S  F  S  L  Y  D  D  L  *  E  L  S  T  T  T  W  F  N  I  V  Y  S  A  V  V  V  K  G  G  V  L  S  L  N  V  S  T  Y  R  *  R  L  Y  V  V  S  L  S  H  L  H  I  F  K  E  L  L  *  G  F  *  G  P  C  L  R  I  Y  Q  S  D  M  E  V  Q  C  S  L  E  Q  E  K  S  S  G  K  D  D  A  D  T  I  R  T  G  K  F  *  V  V  S  K  F  S  R  G  T  E  F  Y  N  I  D  *  D  *  I  *  E  T  I  V  D  V  Y  F  P  A  R  N  F  V  D  C  S  C  A  H  H  F  S  C  N  R  S  W  C  S  I  S  S  L  V  Y  S  T  I  R  M  D  C  R  A  N  H  H  A  L  F  C  S  C  Y  I  H  I  C  I  S  H  M  *  L  L  Q  V  T  *  S  H  N  R  N  A  K  S  L  L  H  *  C  R  *  S  *  S  W :   E  E  M  D  V  V  V  W  F  A  S  V  C  E  L  L  W  D  W  Y  C  L  C  N  Y  K  C  N  K  Y  E  :  I  T  L  Y  P  L  *  *  C  L  A  C  K  R  Q  C  M  Q  F  K  L  N  E  I  C  F  C  *  V  I  H  P  T  E  S  F  C  R  E  I  Q  R  S  N  C  Y  H  K  G  G  E  K  A  V  C  Q  T  G  T  N  N  F  M  L  I  F  G  I  I  Q  I  V  T  S  Q  I  P  N  F  H  N  M  A  W  L  S  V  V  A  A  L  M  S  F  C  Y  S  F  I  G  L  G  L  G  F  S  K  V  I   : D  N  R  G  I  K  G  S  I  V  G  V  P  T  K  S  A  A  Q  K  I  W  L  V  F  Q  A  L  G  D  I  A  F  A  Y  P  Y  S  I  I  L  L  E  I  Q  :  S  S  A  C  L  E  L  R  H  S  C  R  H  V  *  F  S  K  K  N  N  S  R  S  I  S  </second_frame>
            <third_frame>   R  T  T  A  K  H  F  F  I  E  E  V  P  S  L  L  T  K  F  V  P  N  S  N  K  D  I  L  S  P  H  L  F  H  Y  M  M  T  Y  E  N  L  A  L  L  H  G  S  I  *  Y  I  V  L  L  L  *  R  E  E  Y  C  L  *  T  F  L  L  I  G  E  G  F  M  *  Y  H  *  A  T  C  I  F  S  K  S  C  F  K  V  F  R  V  R  V  *  E  Y  I  S  R  I  W  K  F  N  V  L  L  N  K  R  N  L  Q  A  K  M  M  Q  I  Q  L  E  L  V  S  F  K  L  S  Q  N  F  L  E  G  L  S  F  I  T  L  T  R  I  K  S  K  K  Q  *  S  T  C  I  F  L  P  G  T  L  W  T  A  V  A  H  I  I  S  A  V  I  G  A  G  V  L  S  L  A  W  C  T  A  Q  L  G  W  I  A  G  P  I  T  M  L  C  F  A  V  V  T  Y  I  S  A  S  L  I  C  D  C  Y  R  S  P  D  P  I  T  G  T  R  N  P  S  Y  I  D  A  V  R  V  N  L   : G  K  K  W  T  W  L  C  G  L  L  Q  Y  V  S  F  Y  G  T  G  I  A  Y  V  I  T  S  A  T  S  M  R :   *  H  Y  I  H  Y  S  N  A  *  P  A  R  D  S  V  C  N  S  S  *  M  R  Y  A  S  V  K  L  F  I  R  P  K  V  S  A  E  K  F  R  D  Q  I  V  T  I  K  E  E  K  K  L  F  A  R  L  G  Q  I  I  S  C  *  F  L  A  L  F  R  *  *  H  R  R  Y  Q  I  F  I  T  W  H  G  C  L  L  L  L  R  *  C  H  F  V  T  L  S  S  D  W  A  L  G  S  L  K  *  S  :  I  I  G  V  S  R  E  A  L  W  E  Y  Q  Q  R  V  L  L  R  R  F  G  *  F  S  R  H  S  E  T  L  L  L  P  I  L  I  R  L  F  S  S  R  Y  R :   A  R  L  V  W  N  *  G  I  V  V  V  M  Y  S  F  P  K  K  I  I  Q  D  Q  Y  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57201" stop="57444"/>
                    <exon start="57600" stop="57733"/>
                    <exon start="57866" stop="57910"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIHPTESFCREIQRSNCYHKGGEKAVCQTGTNNFMLIFGIIQIVTSQIPNFHNMAWLSVVAALMSFCYSFIGLGLGFSKVIDNRGIKGSIVGVPTKSAAQKIWLVFQALGDIAFAYPYSIILLEIQSSACLELRHSCRHV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56517" stop="56772"/>
                    <exon start="56908" stop="57001"/>
                    <exon start="57117" stop="57120"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STCIFLPGTLWTAVAHIISAVIGAGVLSLAWCTAQLGWIAGPITMLCFAVVTYISASLICDCYRSPDPITGTRNPSYIDAVRVNLGKKWTWLCGLLQYVSFYGTGIAYVITSATSMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56772" e_stop="57444"/>
            <exon e_start="57600" e_stop="57650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.884" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56772" e_stop="57444" e_length="673"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.884">
            <gDNA_intron_boundary i_start="57445" i_stop="57599" i_length="155"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57600" e_stop="57650" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56772" stop="57444"/>
              <exon start="57600" stop="57650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571399" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAGACTGTTCCATCCTACAACATAGAATTTGTAACTCTTTTAGAAGTTTCTCATATGAGGATTCCTCTTTTACATTATTTTGGGGGGAGGGGATTAGACGCGTCTTTTATGTATTTTGACTTATACTCGTTCAGGGAAGAAATGGACGTGGTTGTGTGGTTTGCTTCAGTATGTGAGCTTCTATGGGACTGGTATTGCTTATGTAATTACAAGTGCAACAAGTATGAGGTTAGTTAGCTATATACATATATATGCAGTTCAGATTTTTGCCTCTCTGAATTCTTAAGTGTCTCGATAGCAGTATCTAAAACATTTTTCTTTGGTCATTTGGTCGGGTTATTAGATAACATTATATCCATTATAGTAATGCCTAGCCTGCAAGAGACAGTGTATGCAATTCAAGCTGAATGAGATATGCTTCTGTTAAGTTATTCATCCGACCGAAAGTTTCTGCAGAGAAATTCAGAGATCAAATTGTTACCATAAAGGAGGAGAAAAAGCTGTTTGCCAGACTGGGACAAATAATTTCATGCTGATTTTTGGCATTATTCAGATAGTAACATCGCAGATACCAAATTTTCATAACATGGCATGGTTGTCTGTTGTTGCTGCGCTAATGTCATTTTGTTACTCTTTCATCGGATTGGGCCTTGGGTTCTCTAAAGTGATCG : ATAATAGGGGTATCAAGGGAAGCATTGTGGGAGTACCAACAAAGAGTGCTG</gDNA_template>
            <first_frame> G  R  L  F  H  P  T  T  *  N  L  *  L  F  *  K  F  L  I  *  G  F  L  F  Y  I  I  L  G  G  G  D  *  T  R  L  L  C  I  L  T  Y  T  R  S  G  K  K  W  T  W  L  C  G  L  L  Q  Y  V  S  F  Y  G  T  G  I  A  Y  V  I  T  S  A  T  S  M  R  L  V  S  Y  I  H  I  Y  A  V  Q  I  F  A  S  L  N  S  *  V  S  R  *  Q  Y  L  K  H  F  S  L  V  I  W  S  G  Y  *  I  T  L  Y  P  L  *  *  C  L  A  C  K  R  Q  C  M  Q  F  K  L  N  E  I  C  F  C  *  V  I  H  P  T  E  S  F  C  R  E  I  Q  R  S  N  C  Y  H  K  G  G  E  K  A  V  C  Q  T  G  T  N  N  F  M  L  I  F  G  I  I  Q  I  V  T  S  Q  I  P  N  F  H  N  M  A  W  L  S  V  V  A  A  L  M  S  F  C  Y  S  F  I  G  L  G  L  G  F  S  K  V  I   : D  N  R  G  I  K  G  S  I  V  G  V  P  T  K  S  A  </first_frame>
            <second_frame>  V  D  C  S  I  L  Q  H  R  I  C  N  S  F  R  S  F  S  Y  E  D  S  S  F  T  L  F  W  G  E  G  I  R  R  V  F  Y  V  F  *  L  I  L  V  Q  G  R  N  G  R  G  C  V  V  C  F  S  M  *  A  S  M  G  L  V  L  L  M  *  L  Q  V  Q  Q  V  *  G  *  L  A  I  Y  I  Y  M  Q  F  R  F  L  P  L  *  I  L  K  C  L  D  S  S  I  *  N  I  F  L  W  S  F  G  R  V  I  R  *  H  Y  I  H  Y  S  N  A  *  P  A  R  D  S  V  C  N  S  S  *  M  R  Y  A  S  V  K  L  F  I  R  P  K  V  S  A  E  K  F  R  D  Q  I  V  T  I  K  E  E  K  K  L  F  A  R  L  G  Q  I  I  S  C  *  F  L  A  L  F  R  *  *  H  R  R  Y  Q  I  F  I  T  W  H  G  C  L  L  L  L  R  *  C  H  F  V  T  L  S  S  D  W  A  L  G  S  L  K  *  S  :  I  I  G  V  S  R  E  A  L  W  E  Y  Q  Q  R  V  L </second_frame>
            <third_frame>   *  T  V  P  S  Y  N  I  E  F  V  T  L  L  E  V  S  H  M  R  I  P  L  L  H  Y  F  G  G  R  G  L  D  A  S  F  M  Y  F  D  L  Y  S  F  R  E  E  M  D  V  V  V  W  F  A  S  V  C  E  L  L  W  D  W  Y  C  L  C  N  Y  K  C  N  K  Y  E  V  S  *  L  Y  T  Y  I  C  S  S  D  F  C  L  S  E  F  L  S  V  S  I  A  V  S  K  T  F  F  F  G  H  L  V  G  L  L  D  N  I  I  S  I  I  V  M  P  S  L  Q  E  T  V  Y  A  I  Q  A  E  *  D  M  L  L  L  S  Y  S  S  D  R  K  F  L  Q  R  N  S  E  I  K  L  L  P  *  R  R  R  K  S  C  L  P  D  W  D  K  *  F  H  A  D  F  W  H  Y  S  D  S  N  I  A  D  T  K  F  S  *  H  G  M  V  V  C  C  C  C  A  N  V  I  L  L  L  F  H  R  I  G  P  W  V  L  *  S  D  R :   *  *  G  Y  Q  G  K  H  C  G  S  T  N  K  E  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57201" stop="57444"/>
                    <exon start="57600" stop="57649"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIHPTESFCREIQRSNCYHKGGEKAVCQTGTNNFMLIFGIIQIVTSQIPNFHNMAWLSVVAALMSFCYSFIGLGLGFSKVIDNRGIKGSIVGVPTKSA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56777" stop="57010"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVPSYNIEFVTLLEVSHMRIPLLHYFGGRGLDASFMYFDLYSFREEMDVVVWFASVCELLWDWYCLCNYKCNKYEVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56087" e_stop="56435"/>
            <exon e_start="56539" e_stop="56772"/>
            <exon e_start="56908" e_stop="57001"/>
            <exon e_start="57230" e_stop="57365"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.165" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56087" e_stop="56435" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.919">
            <gDNA_intron_boundary i_start="56436" i_stop="56538" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56539" e_stop="56772" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.845" acc_prob="0.165">
            <gDNA_intron_boundary i_start="56773" i_stop="56907" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56908" e_stop="57001" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.921" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57002" i_stop="57229" i_length="228"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57230" e_stop="57365" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56087" stop="56435"/>
              <exon start="56539" stop="56772"/>
              <exon start="56908" stop="57001"/>
              <exon start="57230" stop="57365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGGAAGTTCCATCATTGTTGACTAAATTTGTGCCTAACTCCAACAAAGACATTCTTTCCCCCCATCTTTTTCATTATATGATGACTTATGAGAACTTAGCACTACTACATGGTTCAATATAGTATATAGTGCTGTTGTTGTGAAGGGAGGAGTATTGTCTTTGAACGTTTCTACTTATAGGTGAAGGCTTTATGTAGTATCATTGAGCCACCTGCATATTTTCAAAGAGTTGCTTTAAGGTTTTTAGGGTCCGTGTCTAAGAATATATCAGTCGGATATGGAAGTTCAATGTTCTCTTGAACAAGAGAAATCTTCAGGCAAAGATGATGCAGATACAATTAGAACTG : GAACTTTGTGGACTGCAGTTGCGCACATCATTTCAGCTGTAATCGGAGCTGGTGTTCTATCTCTAGCCTGGTGTACAGCACAATTAGGATGGATTGCAGGGCCAATCACCATGCTTTGTTTTGCAGTTGTTACATACATATCTGCATCTCTCATATGTGATTGTTACAGGTCACCTGATCCCATAACAGGAACGCGAAATCCCTCTTACATTGATGCCGTTAGAGTTAATCTTG : GGAAGAAATGGACGTGGTTGTGTGGTTTGCTTCAGTATGTGAGCTTCTATGGGACTGGTATTGCTTATGTAATTACAAGTGCAACAAGTATGAG : AGAAATTCAGAGATCAAATTGTTACCATAAAGGAGGAGAAAAAGCTGTTTGCCAGACTGGGACAAATAATTTCATGCTGATTTTTGGCATTATTCAGATAGTAACATCGCAGATACCAAATTTTCATAACATGGCA</gDNA_template>
            <first_frame> R  G  S  S  I  I  V  D  *  I  C  A  *  L  Q  Q  R  H  S  F  P  P  S  F  S  L  Y  D  D  L  *  E  L  S  T  T  T  W  F  N  I  V  Y  S  A  V  V  V  K  G  G  V  L  S  L  N  V  S  T  Y  R  *  R  L  Y  V  V  S  L  S  H  L  H  I  F  K  E  L  L  *  G  F  *  G  P  C  L  R  I  Y  Q  S  D  M  E  V  Q  C  S  L  E  Q  E  K  S  S  G  K  D  D  A  D  T  I  R  T   : G  T  L  W  T  A  V  A  H  I  I  S  A  V  I  G  A  G  V  L  S  L  A  W  C  T  A  Q  L  G  W  I  A  G  P  I  T  M  L  C  F  A  V  V  T  Y  I  S  A  S  L  I  C  D  C  Y  R  S  P  D  P  I  T  G  T  R  N  P  S  Y  I  D  A  V  R  V  N  L   : G  K  K  W  T  W  L  C  G  L  L  Q  Y  V  S  F  Y  G  T  G  I  A  Y  V  I  T  S  A  T  S  M  R :   E  I  Q  R  S  N  C  Y  H  K  G  G  E  K  A  V  C  Q  T  G  T  N  N  F  M  L  I  F  G  I  I  Q  I  V  T  S  Q  I  P  N  F  H  N  M  A </first_frame>
            <second_frame>  E  E  V  P  S  L  L  T  K  F  V  P  N  S  N  K  D  I  L  S  P  H  L  F  H  Y  M  M  T  Y  E  N  L  A  L  L  H  G  S  I  *  Y  I  V  L  L  L  *  R  E  E  Y  C  L  *  T  F  L  L  I  G  E  G  F  M  *  Y  H  *  A  T  C  I  F  S  K  S  C  F  K  V  F  R  V  R  V  *  E  Y  I  S  R  I  W  K  F  N  V  L  L  N  K  R  N  L  Q  A  K  M  M  Q  I  Q  L  E  L  :  E  L  C  G  L  Q  L  R  T  S  F  Q  L  *  S  E  L  V  F  Y  L  *  P  G  V  Q  H  N  *  D  G  L  Q  G  Q  S  P  C  F  V  L  Q  L  L  H  T  Y  L  H  L  S  Y  V  I  V  T  G  H  L  I  P  *  Q  E  R  E  I  P  L  T  L  M  P  L  E  L  I  L  :  G  R  N  G  R  G  C  V  V  C  F  S  M  *  A  S  M  G  L  V  L  L  M  *  L  Q  V  Q  Q  V  *   : E  K  F  R  D  Q  I  V  T  I  K  E  E  K  K  L  F  A  R  L  G  Q  I  I  S  C  *  F  L  A  L  F  R  *  *  H  R  R  Y  Q  I  F  I  T  W   </second_frame>
            <third_frame>   R  K  F  H  H  C  *  L  N  L  C  L  T  P  T  K  T  F  F  P  P  I  F  F  I  I  *  *  L  M  R  T  *  H  Y  Y  M  V  Q  Y  S  I  *  C  C  C  C  E  G  R  S  I  V  F  E  R  F  Y  L  *  V  K  A  L  C  S  I  I  E  P  P  A  Y  F  Q  R  V  A  L  R  F  L  G  S  V  S  K  N  I  S  V  G  Y  G  S  S  M  F  S  *  T  R  E  I  F  R  Q  R  *  C  R  Y  N  *  N  W :   N  F  V  D  C  S  C  A  H  H  F  S  C  N  R  S  W  C  S  I  S  S  L  V  Y  S  T  I  R  M  D  C  R  A  N  H  H  A  L  F  C  S  C  Y  I  H  I  C  I  S  H  M  *  L  L  Q  V  T  *  S  H  N  R  N  A  K  S  L  L  H  *  C  R  *  S  *  S  W :   E  E  M  D  V  V  V  W  F  A  S  V  C  E  L  L  W  D  W  Y  C  L  C  N  Y  K  C  N  K  Y  E  :  R  N  S  E  I  K  L  L  P  *  R  R  R  K  S  C  L  P  D  W  D  K  *  F  H  A  D  F  W  H  Y  S  D  S  N  I  A  D  T  K  F  S  *  H  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56336" stop="56435"/>
                    <exon start="56539" stop="56772"/>
                    <exon start="56908" stop="57001"/>
                    <exon start="57230" stop="57365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPCLRIYQSDMEVQCSLEQEKSSGKDDADTIRTGTLWTAVAHIISAVIGAGVLSLAWCTAQLGWIAGPITMLCFAVVTYISASLICDCYRSPDPITGTRNPSYIDAVRVNLGKKWTWLCGLLQYVSFYGTGIAYVITSATSMREIQRSNCYHKGGEKAVCQTGTNNFMLIFGIIQIVTSQIPNFHNMA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="58097" PGL_stop="58919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58097" e_stop="58318"/>
            <exon e_start="58410" e_stop="58919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.938" e_score="0.995"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="58097" e_stop="58318" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.938">
            <gDNA_intron_boundary i_start="58319" i_stop="58409" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="58410" e_stop="58919" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58097" stop="58318"/>
              <exon start="58410" stop="58919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATACACTAAAATCTCCTCCACCAGAAAATCAGACCATGAAGAAGGCGTCAATAAATGCGATAGTTATCACCACTTTCTTCTATCTATGCTGTAGTTGCTTCGGATATGCAGCCTTTGGGAACGACACACCAGGGAACCTCTTGACAGGTTTCTACGAGCCGTTTTGGCTTGTTGATTTTGCCAATGCCTGCATAGTCCTCCATCTGGTTGGAGGGTATCAG : GTATACAGCCAGCCAGTATTCGCATTTGTTGAAAAATGGGCAACTCAGAAGTACCCTCAGAACAGATTCATAAATAATTTCTACGCCATCAAACTCCCAGTGTTGCCAGCTCTCCAGTTGAACCTCTTCCGGTTATGTTTTCGAACTCTATATGTTATATCTACAACAGCAATAGCAATGGCATTTCCATATTTCAACCAGGTATTAGGAATCTTGGGAGCATTGAACTTTTGGCCTATGACCATATATTTTCCAGTGGAAATGTACATTGTGCAAAGAAAAATTGGAGCTTGGACAAGAAAATGGATACTTCTTGAAGGTTTCAGTATGGTTTGTTTGATTGTATCTTTACTGGGGTTGATTGGATCAATTGAGGGAATAGTTAAAGCTAAATTAGCTTGAAATGTAAAATCTTACAATTAAATAGCTAGCTAGTAAGATTTGTAAGCCAAAAGACACTCTATTCATGCCATTCTTCTAATGGAATTTACACATCTCATTCAGTAACTT</gDNA_template>
            <first_frame> D  T  L  K  S  P  P  P  E  N  Q  T  M  K  K  A  S  I  N  A  I  V  I  T  T  F  F  Y  L  C  C  S  C  F  G  Y  A  A  F  G  N  D  T  P  G  N  L  L  T  G  F  Y  E  P  F  W  L  V  D  F  A  N  A  C  I  V  L  H  L  V  G  G  Y  Q  :  V  Y  S  Q  P  V  F  A  F  V  E  K  W  A  T  Q  K  Y  P  Q  N  R  F  I  N  N  F  Y  A  I  K  L  P  V  L  P  A  L  Q  L  N  L  F  R  L  C  F  R  T  L  Y  V  I  S  T  T  A  I  A  M  A  F  P  Y  F  N  Q  V  L  G  I  L  G  A  L  N  F  W  P  M  T  I  Y  F  P  V  E  M  Y  I  V  Q  R  K  I  G  A  W  T  R  K  W  I  L  L  E  G  F  S  M  V  C  L  I  V  S  L  L  G  L  I  G  S  I  E  G  I  V  K  A  K  L  A  *  N  V  K  S  Y  N  *  I  A  S  *  *  D  L  *  A  K  R  H  S  I  H  A  I  L  L  M  E  F  T  H  L  I  Q  *  L </first_frame>
            <second_frame>  I  H  *  N  L  L  H  Q  K  I  R  P  *  R  R  R  Q  *  M  R  *  L  S  P  L  S  S  I  Y  A  V  V  A  S  D  M  Q  P  L  G  T  T  H  Q  G  T  S  *  Q  V  S  T  S  R  F  G  L  L  I  L  P  M  P  A  *  S  S  I  W  L  E  G  I  R :   Y  T  A  S  Q  Y  S  H  L  L  K  N  G  Q  L  R  S  T  L  R  T  D  S  *  I  I  S  T  P  S  N  S  Q  C  C  Q  L  S  S  *  T  S  S  G  Y  V  F  E  L  Y  M  L  Y  L  Q  Q  Q  *  Q  W  H  F  H  I  S  T  R  Y  *  E  S  W  E  H  *  T  F  G  L  *  P  Y  I  F  Q  W  K  C  T  L  C  K  E  K  L  E  L  G  Q  E  N  G  Y  F  L  K  V  S  V  W  F  V  *  L  Y  L  Y  W  G  *  L  D  Q  L  R  E  *  L  K  L  N  *  L  E  M  *  N  L  T  I  K  *  L  A  S  K  I  C  K  P  K  D  T  L  F  M  P  F  F  *  W  N  L  H  I  S  F  S  N   </second_frame>
            <third_frame>   Y  T  K  I  S  S  T  R  K  S  D  H  E  E  G  V  N  K  C  D  S  Y  H  H  F  L  L  S  M  L  *  L  L  R  I  C  S  L  W  E  R  H  T  R  E  P  L  D  R  F  L  R  A  V  L  A  C  *  F  C  Q  C  L  H  S  P  P  S  G  W  R  V  S   : G  I  Q  P  A  S  I  R  I  C  *  K  M  G  N  S  E  V  P  S  E  Q  I  H  K  *  F  L  R  H  Q  T  P  S  V  A  S  S  P  V  E  P  L  P  V  M  F  S  N  S  I  C  Y  I  Y  N  S  N  S  N  G  I  S  I  F  Q  P  G  I  R  N  L  G  S  I  E  L  L  A  Y  D  H  I  F  S  S  G  N  V  H  C  A  K  K  N  W  S  L  D  K  K  M  D  T  S  *  R  F  Q  Y  G  L  F  D  C  I  F  T  G  V  D  W  I  N  *  G  N  S  *  S  *  I  S  L  K  C  K  I  L  Q  L  N  S  *  L  V  R  F  V  S  Q  K  T  L  Y  S  C  H  S  S  N  G  I  Y  T  S  H  S  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58097" stop="58318"/>
                    <exon start="58410" stop="58811"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTLKSPPPENQTMKKASINAIVITTFFYLCCSCFGYAAFGNDTPGNLLTGFYEPFWLVDFANACIVLHLVGGYQVYSQPVFAFVEKWATQKYPQNRFINNFYAIKLPVLPALQLNLFRLCFRTLYVISTTAIAMAFPYFNQVLGILGALNFWPMTIYFPVEMYIVQRKIGAWTRKWILLEGFSMVCLIVSLLGLIGSIEGIVKAKLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="59974" PGL_stop="62885"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59974" e_stop="60065"/>
            <exon e_start="60550" e_stop="60786"/>
            <exon e_start="61153" e_stop="61246"/>
            <exon e_start="62217" e_stop="62431"/>
            <exon e_start="62570" e_stop="62703"/>
            <exon e_start="62793" e_stop="62885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.422" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59974" e_stop="60065" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.422">
            <gDNA_intron_boundary i_start="60066" i_stop="60549" i_length="484"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60550" e_stop="60786" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.845">
            <gDNA_intron_boundary i_start="60787" i_stop="61152" i_length="366"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61153" e_stop="61246" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.811">
            <gDNA_intron_boundary i_start="61247" i_stop="62216" i_length="970"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62217" e_stop="62431" e_length="215"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.965">
            <gDNA_intron_boundary i_start="62432" i_stop="62569" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62570" e_stop="62703" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.956" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62704" i_stop="62792" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62793" e_stop="62885" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59974" stop="60065"/>
              <exon start="60550" stop="60786"/>
              <exon start="61153" stop="61246"/>
              <exon start="62217" stop="62431"/>
              <exon start="62570" stop="62703"/>
              <exon start="62793" stop="62885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGAAAGTGACTCTCAAATGCCATTTTTGGACCCAAATTATGTTTCTTCTTCTTCTTCCCAATCATCTAAGCTTGCCCTCAAAAGAACAG : GAAATGAATGGACAGCTTTGGCACATTTAATTACAGCAGTAATTGGTTCTGGTGTTCTATCATTAGCATGGAGCATGGCACAGCTAGGTTGGGTTGCTGGTCCATTGACTATGCTCGTATTTGCTTGTGTCTCTCTTACTTCTGTATTTCTTCTCTGCAATTGCTATAAGTCTCCTGATCCAGAAACTGGCCCTGATAGGAATGGCTGTTATCTTGATGCTGTACAGAAGATTTTAG : GAAAAAGAAATGCCTGGTTTTGTGGAATCGCTGTTCGTATAAATTTCATCAAGCTTGCAATTATATATACAATTACATCCGCCTCCAGCATACA : AGCTATCCAGAAATCAAACTGCTATCATGATCAAGGTCACAAGGCTACCTGTGGATATGAAAGTACTAGGTATATGGTAATATTTGGATTAATCCAAGTTATAGTGTCTCAAATTCCTGATTTTCCGAATATGAAGTGGCTCTCCGTAGTTGCTGCTGTCATGTCCTTCACATATTCAATTATCGGATCAGCACTTGGCTTAGCCAAAGTAATAG : AAAATGGAGAAATCAAAGGAAGCATTACAGGACTGCCAAGTTCTACAGCTGCTGAGAAAGTATGGTTGGTTGCTCAAGCGCTCGGGAACATTGCCTTTGCCTTTCCATTCTCTCTTATATTTCTGGAGGTTCAG : GACACATTAAAGGCACCTCCTCCAGAAAAGATCACCATGAAGAAGGTCTCAATTATGACATCCTGTATTACAACTTTTTTCTACCTTTGCTGT</gDNA_template>
            <first_frame> *  R  K  *  L  S  N  A  I  F  G  P  K  L  C  F  F  F  F  F  P  I  I  *  A  C  P  Q  K  N  R :   K  *  M  D  S  F  G  T  F  N  Y  S  S  N  W  F  W  C  S  I  I  S  M  E  H  G  T  A  R  L  G  C  W  S  I  D  Y  A  R  I  C  L  C  L  S  Y  F  C  I  S  S  L  Q  L  L  *  V  S  *  S  R  N  W  P  *  *  E  W  L  L  S  *  C  C  T  E  D  F  R :   K  K  K  C  L  V  L  W  N  R  C  S  Y  K  F  H  Q  A  C  N  Y  I  Y  N  Y  I  R  L  Q  H  T  :  S  Y  P  E  I  K  L  L  S  *  S  R  S  Q  G  Y  L  W  I  *  K  Y  *  V  Y  G  N  I  W  I  N  P  S  Y  S  V  S  N  S  *  F  S  E  Y  E  V  A  L  R  S  C  C  C  H  V  L  H  I  F  N  Y  R  I  S  T  W  L  S  Q  S  N  R :   K  W  R  N  Q  R  K  H  Y  R  T  A  K  F  Y  S  C  *  E  S  M  V  G  C  S  S  A  R  E  H  C  L  C  L  S  I  L  S  Y  I  S  G  G  S   : G  H  I  K  G  T  S  S  R  K  D  H  H  E  E  G  L  N  Y  D  I  L  Y  Y  N  F  F  L  P  L  L  </first_frame>
            <second_frame>  E  E  S  D  S  Q  M  P  F  L  D  P  N  Y  V  S  S  S  S  S  Q  S  S  K  L  A  L  K  R  T   : G  N  E  W  T  A  L  A  H  L  I  T  A  V  I  G  S  G  V  L  S  L  A  W  S  M  A  Q  L  G  W  V  A  G  P  L  T  M  L  V  F  A  C  V  S  L  T  S  V  F  L  L  C  N  C  Y  K  S  P  D  P  E  T  G  P  D  R  N  G  C  Y  L  D  A  V  Q  K  I  L   : G  K  R  N  A  W  F  C  G  I  A  V  R  I  N  F  I  K  L  A  I  I  Y  T  I  T  S  A  S  S  I  Q :   A  I  Q  K  S  N  C  Y  H  D  Q  G  H  K  A  T  C  G  Y  E  S  T  R  Y  M  V  I  F  G  L  I  Q  V  I  V  S  Q  I  P  D  F  P  N  M  K  W  L  S  V  V  A  A  V  M  S  F  T  Y  S  I  I  G  S  A  L  G  L  A  K  V  I   : E  N  G  E  I  K  G  S  I  T  G  L  P  S  S  T  A  A  E  K  V  W  L  V  A  Q  A  L  G  N  I  A  F  A  F  P  F  S  L  I  F  L  E  V  Q  :  D  T  L  K  A  P  P  P  E  K  I  T  M  K  K  V  S  I  M  T  S  C  I  T  T  F  F  Y  L  C  C </second_frame>
            <third_frame>   K  K  V  T  L  K  C  H  F  W  T  Q  I  M  F  L  L  L  L  P  N  H  L  S  L  P  S  K  E  Q  :  E  M  N  G  Q  L  W  H  I  *  L  Q  Q  *  L  V  L  V  F  Y  H  *  H  G  A  W  H  S  *  V  G  L  L  V  H  *  L  C  S  Y  L  L  V  S  L  L  L  L  Y  F  F  S  A  I  A  I  S  L  L  I  Q  K  L  A  L  I  G  M  A  V  I  L  M  L  Y  R  R  F  *  :  E  K  E  M  P  G  F  V  E  S  L  F  V  *  I  S  S  S  L  Q  L  Y  I  Q  L  H  P  P  P  A  Y   : K  L  S  R  N  Q  T  A  I  M  I  K  V  T  R  L  P  V  D  M  K  V  L  G  I  W  *  Y  L  D  *  S  K  L  *  C  L  K  F  L  I  F  R  I  *  S  G  S  P  *  L  L  L  S  C  P  S  H  I  Q  L  S  D  Q  H  L  A  *  P  K  *  *  :  K  M  E  K  S  K  E  A  L  Q  D  C  Q  V  L  Q  L  L  R  K  Y  G  W  L  L  K  R  S  G  T  L  P  L  P  F  H  S  L  L  Y  F  W  R  F  R :   T  H  *  R  H  L  L  Q  K  R  S  P  *  R  R  S  Q  L  *  H  P  V  L  Q  L  F  S  T  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59975" stop="60065"/>
                    <exon start="60550" stop="60786"/>
                    <exon start="61153" stop="61246"/>
                    <exon start="62217" stop="62431"/>
                    <exon start="62570" stop="62703"/>
                    <exon start="62793" stop="62885"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EESDSQMPFLDPNYVSSSSSQSSKLALKRTGNEWTALAHLITAVIGSGVLSLAWSMAQLGWVAGPLTMLVFACVSLTSVFLLCNCYKSPDPETGPDRNGCYLDAVQKILGKRNAWFCGIAVRINFIKLAIIYTITSASSIQAIQKSNCYHDQGHKATCGYESTRYMVIFGLIQVIVSQIPDFPNMKWLSVVAAVMSFTYSIIGSALGLAKVIENGEIKGSITGLPSSTAAEKVWLVAQALGNIAFAFPFSLIFLEVQDTLKAPPPEKITMKKVSIMTSCITTFFYLCC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="63925" PGL_stop="64260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63925" e_stop="64260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="63925" e_stop="64260" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63925" stop="64260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACTCAGAAAAGAATTGAAAGTTGGAAAAGCAAAGCTATCATGCTTCGCGTCTTTACAATGGTATGTCTGGTTGTGATATTGTACGCATTTGTTGGGTCTATCAGAGGAGTTATTGTTGCTAGGTTCAGGTAAAAATGCTTCTTCACGTTTCTACAAGGTTTGCGTACATGCTATCCTCTCCGAACCCCCACTTGTGAGATTATACTAGATATGTTATTTAAAAAAGAAATGTAAATAAATTCTTTATAGTTTTAAAATGTTCGGTATGTAAACAATGCCTTACGTTGTCAACAACCAAATATGTATTATAAAATTTCATCGATTTTCGTGTACT</gDNA_template>
            <first_frame> *  L  R  K  E  L  K  V  G  K  A  K  L  S  C  F  A  S  L  Q  W  Y  V  W  L  *  Y  C  T  H  L  L  G  L  S  E  E  L  L  L  L  G  S  G  K  N  A  S  S  R  F  Y  K  V  C  V  H  A  I  L  S  E  P  P  L  V  R  L  Y  *  I  C  Y  L  K  K  K  C  K  *  I  L  Y  S  F  K  M  F  G  M  *  T  M  P  Y  V  V  N  N  Q  I  C  I  I  K  F  H  R  F  S  C  T </first_frame>
            <second_frame>  N  S  E  K  N  *  K  L  E  K  Q  S  Y  H  A  S  R  L  Y  N  G  M  S  G  C  D  I  V  R  I  C  W  V  Y  Q  R  S  Y  C  C  *  V  Q  V  K  M  L  L  H  V  S  T  R  F  A  Y  M  L  S  S  P  N  P  H  L  *  D  Y  T  R  Y  V  I  *  K  R  N  V  N  K  F  F  I  V  L  K  C  S  V  C  K  Q  C  L  T  L  S  T  T  K  Y  V  L  *  N  F  I  D  F  R  V   </second_frame>
            <third_frame>   T  Q  K  R  I  E  S  W  K  S  K  A  I  M  L  R  V  F  T  M  V  C  L  V  V  I  L  Y  A  F  V  G  S  I  R  G  V  I  V  A  R  F  R  *  K  C  F  F  T  F  L  Q  G  L  R  T  C  Y  P  L  R  T  P  T  C  E  I  I  L  D  M  L  F  K  K  E  M  *  I  N  S  L  *  F  *  N  V  R  Y  V  N  N  A  L  R  C  Q  Q  P  N  M  Y  Y  K  I  S  S  I  F  V  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0019G22.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="77661" PGL_stop="69367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77661" e_stop="76899"/>
            <exon e_start="75981" e_stop="75700"/>
            <exon e_start="75622" e_stop="75527"/>
            <exon e_start="74074" e_stop="73896"/>
            <exon e_start="73643" e_stop="73562"/>
            <exon e_start="72713" e_stop="72589"/>
            <exon e_start="71606" e_stop="71514"/>
            <exon e_start="70190" e_stop="70037"/>
            <exon e_start="69644" e_stop="69367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.921" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.713" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="77661" e_stop="76899" e_length="763"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.921">
            <gDNA_intron_boundary i_start="76898" i_stop="75982" i_length="917"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75981" e_stop="75700" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="75699" i_stop="75623" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75622" e_stop="75527" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75526" i_stop="74075" i_length="1452"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74074" e_stop="73896" e_length="179"/>
          </exon>
          <intron i_serial="4" don_prob="0.776" acc_prob="0.986">
            <gDNA_intron_boundary i_start="73895" i_stop="73644" i_length="252"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73643" e_stop="73562" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73561" i_stop="72714" i_length="848"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72713" e_stop="72589" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.981">
            <gDNA_intron_boundary i_start="72588" i_stop="71607" i_length="982"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71606" e_stop="71514" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.713">
            <gDNA_intron_boundary i_start="71513" i_stop="70191" i_length="1323"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70190" e_stop="70037" e_length="154"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70036" i_stop="69645" i_length="392"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="69644" e_stop="69367" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77661" stop="76899"/>
              <exon start="75981" stop="75700"/>
              <exon start="75622" stop="75527"/>
              <exon start="74074" stop="73896"/>
              <exon start="73643" stop="73562"/>
              <exon start="72713" stop="72589"/>
              <exon start="71606" stop="71514"/>
              <exon start="70190" stop="70037"/>
              <exon start="69644" stop="69367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576669" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATAAATTCAAGTCTTCTCTCGAAGAAGCTTTAAGTAATATATTCCAGGAAGAGGGGTTTTTCAATGAAACCCTGAATAGTCTTTCTCATGTTCATATAATTGACACTGATGGTGCTTCTTCTAAAGGAAATCATGGCACCTCCTCATTTCAGAGTGTGGCTGACAAATCCATTACTCGATTTTATTTTGAATTTTCTTCATCATGGCCCCGTACTCCCAATTGGATATCTTTGTTTGGAAATGACACATTCTACTCAAGCTTTGCCCGAATTTTTAAACGTTTAGTACAGGAATGTGGTGCTCCTGTTATACTGGCACTAAAAGATGCATTAGCAGACTACATAAATGCAAAGGAGAGGACAAAGCAGTGTGTTGCTGCTGAGGCAGTGGCAGGTGTGCTACATTCTGATGTTTCCGGTGTTTCAGAAGCATGGGATAGCTGGTTGATGACCCATTTTCAGAGTATTATTCAAGCACCAACAGTTGAGTCCATACCTGAGTGGGCTGCTTGTATTCGTTATGCAGTTACTGGAAAAGGAAAACATGGAACAAAAATTCCACTCTTGAGACAAAAGGTCATGGACTGTTTAATGAACCCCTTGCCTGAAACAGTTAGTACTACTGTAGTTGCCAAGCGATACATGTTTCTTTCAGCTGCACTAATAGAAGTTTCCCCACCAAAAATGCCAGTTACTGAACTAGCGCTTCACTATAAGCTTCTTGAAGAATTGCTTGGCAGTATGAGCCATTCATCTCCACAA : GTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACG : CTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAG : GAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTTAAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAG : GCACACTTTCGTCCTCTCTAAGGTGGACAAACAACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAG : GTAAGGGAGCATGCGGCAGCAGTCTTGGCTGGCCTAATGAAGGGCGGAGATGAAGATTTAGCTCAGGATTTCCGTCATAGAGCTTATACAGAAGCAAGTATCATTCAGAAGAAGAGGAAACAAAG : AAGCATGCGTTCTGGATTCTCTGTAGCATCCCTACATGGAAAGATACTTGCTTTGGCTGCTTGCGTGCTATCAGTTCCTTATGATATTCCCAG : TTGGTTACCAGAACAGGTTACACTATTGGCTCAATTTGTTTCTGAATCATCACCTGTAAAATCTACCGTGACAAAAGCTGTGGCAGAGTTTCGACGCACTCATGCGGACACATGGAATGTTCAGAAAGATTCCTTCACTGAAGAACAACTTGAG : GTCCTGGCTGATACATCATCATCCTCATCATACTTTGCTTGACATTCATGGTGTGCCTTACATGAGAGATAGAATTATACCATATCATATATCTCATATATTGTAAGTGGGAAGTCTCCAAGTCTAAAGTTGAACTACAAAAATGCTCATACAATTTTTTATTAAAAATTTTGTTCTACACTAAAAATTAAAAGAAAAAACTTTTAGACAGAAAATCATTCATTTTCTACATTGAATTTGAACGTAGAAAATTGTGTTGTCATCTTCCCACAATTGTT</gDNA_template>
            <first_frame> G  *  I  Q  V  F  S  R  R  S  F  K  *  Y  I  P  G  R  G  V  F  Q  *  N  P  E  *  S  F  S  C  S  Y  N  *  H  *  W  C  F  F  *  R  K  S  W  H  L  L  I  S  E  C  G  *  Q  I  H  Y  S  I  L  F  *  I  F  F  I  M  A  P  Y  S  Q  L  D  I  F  V  W  K  *  H  I  L  L  K  L  C  P  N  F  *  T  F  S  T  G  M  W  C  S  C  Y  T  G  T  K  R  C  I  S  R  L  H  K  C  K  G  E  D  K  A  V  C  C  C  *  G  S  G  R  C  A  T  F  *  C  F  R  C  F  R  S  M  G  *  L  V  D  D  P  F  S  E  Y  Y  S  S  T  N  S  *  V  H  T  *  V  G  C  L  Y  S  L  C  S  Y  W  K  R  K  T  W  N  K  N  S  T  L  E  T  K  G  H  G  L  F  N  E  P  L  A  *  N  S  *  Y  Y  C  S  C  Q  A  I  H  V  S  F  S  C  T  N  R  S  F  P  T  K  N  A  S  Y  *  T  S  A  S  L  *  A  S  *  R  I  A  W  Q  Y  E  P  F  I  S  T   : S  E  G  I  H  W  C  H  P  L  C  F  M  L  K  H  S  A  P  G  V  L  Q  S  S  S  S  T  *  S  R  N  K  *  C  E  Q  E  S  *  S  R  E  L  G  S  L  S  S  R  T  C  I  *  A  C  G  E  D  P  K  F  *  P  V  R  H  S  G  C  A  N  G  H  D  F  *  Q  W  S  I  N  R  T  V  S  *  *  C  *  M  D  G  D   : A  I  S  F  H  Y  L  I  S  K  V  R  K  I  L  G  S  A  G  C  C  C  W  S  F  V  S  C  N  I  S  T   : G  D  V  K  *  G  F  V  D  T  G  Q  N  S  F  *  I  A  K  V  E  S  L  F  R  V  P  F  K  E  S  C  A  H  H  S  F  Y  S  Q  *  Y  Q  L  A  Y  K  I  Y  D  S  D  L  F  T  E  F  H  V  *  :  A  H  F  R  P  L  *  G  G  Q  T  T  N  L  A  N  C  R  E  A  T  R  R  *  S  S  *   : G  K  G  A  C  G  S  S  L  G  W  P  N  E  G  R  R  *  R  F  S  S  G  F  P  S  *  S  L  Y  R  S  K  Y  H  S  E  E  E  E  T  K  :  K  H  A  F  W  I  L  C  S  I  P  T  W  K  D  T  C  F  G  C  L  R  A  I  S  S  L  *  Y  S  Q  :  L  V  T  R  T  G  Y  T  I  G  S  I  C  F  *  I  I  T  C  K  I  Y  R  D  K  S  C  G  R  V  S  T  H  S  C  G  H  M  E  C  S  E  R  F  L  H  *  R  T  T  *   : G  P  G  *  Y  I  I  I  L  I  I  L  C  L  T  F  M  V  C  L  T  *  E  I  E  L  Y  H  I  I  Y  L  I  Y  C  K  W  E  V  S  K  S  K  V  E  L  Q  K  C  S  Y  N  F  L  L  K  I  L  F  Y  T  K  N  *  K  K  K  L  L  D  R  K  S  F  I  F  Y  I  E  F  E  R  R  K  L  C  C  H  L  P  T  I  V </first_frame>
            <second_frame>  D  K  F  K  S  S  L  E  E  A  L  S  N  I  F  Q  E  E  G  F  F  N  E  T  L  N  S  L  S  H  V  H  I  I  D  T  D  G  A  S  S  K  G  N  H  G  T  S  S  F  Q  S  V  A  D  K  S  I  T  R  F  Y  F  E  F  S  S  S  W  P  R  T  P  N  W  I  S  L  F  G  N  D  T  F  Y  S  S  F  A  R  I  F  K  R  L  V  Q  E  C  G  A  P  V  I  L  A  L  K  D  A  L  A  D  Y  I  N  A  K  E  R  T  K  Q  C  V  A  A  E  A  V  A  G  V  L  H  S  D  V  S  G  V  S  E  A  W  D  S  W  L  M  T  H  F  Q  S  I  I  Q  A  P  T  V  E  S  I  P  E  W  A  A  C  I  R  Y  A  V  T  G  K  G  K  H  G  T  K  I  P  L  L  R  Q  K  V  M  D  C  L  M  N  P  L  P  E  T  V  S  T  T  V  V  A  K  R  Y  M  F  L  S  A  A  L  I  E  V  S  P  P  K  M  P  V  T  E  L  A  L  H  Y  K  L  L  E  E  L  L  G  S  M  S  H  S  S  P  Q  :  V  R  E  S  I  G  V  T  L  S  V  L  C  S  N  I  R  L  Q  V  S  C  N  Q  A  H  P  H  E  V  G  T  S  N  V  N  R  K  V  E  A  G  N  W  D  H  Y  L  V  E  R  A  S  E  L  V  V  K  I  Q  S  F  S  Q  S  D  T  L  D  V  Q  T  D  M  I  S  D  N  G  V  L  T  E  Q  S  H  D  D  V  K  W  M  E  T  :  L  F  H  F  I  I  S  S  L  K  S  G  R  S  S  V  L  L  D  V  V  V  G  L  L  Y  P  V  I  S  L  Q  :  E  T  S  N  K  D  L  S  T  L  A  K  I  A  F  E  L  L  K  W  R  V  Y  S  E  S  H  L  R  K  V  V  L  T  I  L  S  I  A  N  D  T  N  W  R  T  R  S  T  T  L  T  Y  L  R  S  F  M  Y  R :   H  T  F  V  L  S  K  V  D  K  Q  Q  I  W  Q  T  V  E  K  L  L  A  D  N  Q  V  E  :  V  R  E  H  A  A  A  V  L  A  G  L  M  K  G  G  D  E  D  L  A  Q  D  F  R  H  R  A  Y  T  E  A  S  I  I  Q  K  K  R  K  Q  R :   S  M  R  S  G  F  S  V  A  S  L  H  G  K  I  L  A  L  A  A  C  V  L  S  V  P  Y  D  I  P  S :   W  L  P  E  Q  V  T  L  L  A  Q  F  V  S  E  S  S  P  V  K  S  T  V  T  K  A  V  A  E  F  R  R  T  H  A  D  T  W  N  V  Q  K  D  S  F  T  E  E  Q  L  E  :  V  L  A  D  T  S  S  S  S  S  Y  F  A  *  H  S  W  C  A  L  H  E  R  *  N  Y  T  I  S  Y  I  S  Y  I  V  S  G  K  S  P  S  L  K  L  N  Y  K  N  A  H  T  I  F  Y  *  K  F  C  S  T  L  K  I  K  R  K  N  F  *  T  E  N  H  S  F  S  T  L  N  L  N  V  E  N  C  V  V  I  F  P  Q  L   </second_frame>
            <third_frame>   I  N  S  S  L  L  S  K  K  L  *  V  I  Y  S  R  K  R  G  F  S  M  K  P  *  I  V  F  L  M  F  I  *  L  T  L  M  V  L  L  L  K  E  I  M  A  P  P  H  F  R  V  W  L  T  N  P  L  L  D  F  I  L  N  F  L  H  H  G  P  V  L  P  I  G  Y  L  C  L  E  M  T  H  S  T  Q  A  L  P  E  F  L  N  V  *  Y  R  N  V  V  L  L  L  Y  W  H  *  K  M  H  *  Q  T  T  *  M  Q  R  R  G  Q  S  S  V  L  L  L  R  Q  W  Q  V  C  Y  I  L  M  F  P  V  F  Q  K  H  G  I  A  G  *  *  P  I  F  R  V  L  F  K  H  Q  Q  L  S  P  Y  L  S  G  L  L  V  F  V  M  Q  L  L  E  K  E  N  M  E  Q  K  F  H  S  *  D  K  R  S  W  T  V  *  *  T  P  C  L  K  Q  L  V  L  L  *  L  P  S  D  T  C  F  F  Q  L  H  *  *  K  F  P  H  Q  K  C  Q  L  L  N  *  R  F  T  I  S  F  L  K  N  C  L  A  V  *  A  I  H  L  H  K :   *  G  N  P  L  V  S  P  S  L  F  Y  A  Q  T  F  G  S  R  C  P  A  I  K  L  I  H  M  K  *  E  Q  V  M  *  T  G  K  L  K  Q  G  I  G  I  I  I  *  *  N  V  H  L  S  L  W  *  R  S  K  V  L  A  S  Q  T  L  W  M  C  K  R  T  *  F  L  T  M  E  Y  *  P  N  S  L  M  M  M  L  N  G  W  R  R :   Y  F  I  S  L  S  H  L  *  S  Q  E  D  P  R  F  C  W  M  L  L  L  V  F  C  I  L  *  Y  L  Y  R :   R  R  Q  I  R  I  C  R  H  W  P  K  *  L  L  N  C  *  S  G  E  F  I  Q  S  P  I  *  G  K  L  C  S  P  F  F  L  *  P  M  I  P  I  G  V  Q  D  L  R  L  *  P  I  Y  G  V  S  C  I   : G  T  L  S  S  S  L  R  W  T  N  N  K  F  G  K  L  S  R  S  Y  S  Q  I  I  K  L  R :   *  G  S  M  R  Q  Q  S  W  L  A  *  *  R  A  E  M  K  I  *  L  R  I  S  V  I  E  L  I  Q  K  Q  V  S  F  R  R  R  G  N  K   : E  A  C  V  L  D  S  L  *  H  P  Y  M  E  R  Y  L  L  W  L  L  A  C  Y  Q  F  L  M  I  F  P   : V  G  Y  Q  N  R  L  H  Y  W  L  N  L  F  L  N  H  H  L  *  N  L  P  *  Q  K  L  W  Q  S  F  D  A  L  M  R  T  H  G  M  F  R  K  I  P  S  L  K  N  N  L  R :   S  W  L  I  H  H  H  P  H  H  T  L  L  D  I  H  G  V  P  Y  M  R  D  R  I  I  P  Y  H  I  S  H  I  L  *  V  G  S  L  Q  V  *  S  *  T  T  K  M  L  I  Q  F  F  I  K  N  F  V  L  H  *  K  L  K  E  K  T  F  R  Q  K  I  I  H  F  L  H  *  I  *  T  *  K  I  V  L  S  S  S  H  N  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77660" stop="76899"/>
                    <exon start="75981" stop="75700"/>
                    <exon start="75622" stop="75527"/>
                    <exon start="74074" stop="73896"/>
                    <exon start="73643" stop="73562"/>
                    <exon start="72713" stop="72589"/>
                    <exon start="71606" stop="71514"/>
                    <exon start="70190" stop="70037"/>
                    <exon start="69644" stop="69603"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1812</number_coding_nucleotides>
                  <number_encoded_amino_acids>604</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKFKSSLEEALSNIFQEEGFFNETLNSLSHVHIIDTDGASSKGNHGTSSFQSVADKSITRFYFEFSSSWPRTPNWISLFGNDTFYSSFARIFKRLVQECGAPVILALKDALADYINAKERTKQCVAAEAVAGVLHSDVSGVSEAWDSWLMTHFQSIIQAPTVESIPEWAACIRYAVTGKGKHGTKIPLLRQKVMDCLMNPLPETVSTTVVAKRYMFLSAALIEVSPPKMPVTELALHYKLLEELLGSMSHSSPQVRESIGVTLSVLCSNIRLQVSCNQAHPHEVGTSNVNRKVEAGNWDHYLVERASELVVKIQSFSQSDTLDVQTDMISDNGVLTEQSHDDVKWMETLFHFIISSLKSGRSSVLLDVVVGLLYPVISLQETSNKDLSTLAKIAFELLKWRVYSESHLRKVVLTILSIANDTNWRTRSTTLTYLRSFMYRHTFVLSKVDKQQIWQTVEKLLADNQVEVREHAAAVLAGLMKGGDEDLAQDFRHRAYTEASIIQKKRKQRSMRSGFSVASLHGKILALAACVLSVPYDIPSWLPEQVTLLAQFVSESSPVKSTVTKAVAEFRRTHADTWNVQKDSFTEEQLEVLADTSSSSSYFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75981" e_stop="75700"/>
            <exon e_start="75622" e_stop="75400"/>
            <exon e_start="74074" e_stop="73896"/>
            <exon e_start="73643" e_stop="73562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.590" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.986" e_score="0.989"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75981" e_stop="75700" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="75699" i_stop="75623" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75622" e_stop="75400" e_length="223"/>
          </exon>
          <intron i_serial="2" don_prob="0.590" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75399" i_stop="74075" i_length="1325"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="74074" e_stop="73896" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="0.776" acc_prob="0.986">
            <gDNA_intron_boundary i_start="73895" i_stop="73644" i_length="252"/>
          </intron>
          <exon e_serial="4" e_score="0.963">
            <gDNA_exon_boundary e_start="73643" e_stop="73562" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75981" stop="75700"/>
              <exon start="75622" stop="75400"/>
              <exon start="74074" stop="73896"/>
              <exon start="73643" stop="73562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACG : CTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAGGTTAGTTGCAACATCACATCATTCCCGTTGCTTGTCTTTTCAGTTGTTTTGACATTTTGAAGGGATGAAATTACTGTCTGAAGAACTTGGCATATACACACTTTCCCTCCATTTACGGATGAAAATG : GAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTTAAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAG : GCACACTTTCGTCCTCTCTAAGGTGGACAAACAACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAG</gDNA_template>
            <first_frame> V  R  E  S  I  G  V  T  L  S  V  L  C  S  N  I  R  L  Q  V  S  C  N  Q  A  H  P  H  E  V  G  T  S  N  V  N  R  K  V  E  A  G  N  W  D  H  Y  L  V  E  R  A  S  E  L  V  V  K  I  Q  S  F  S  Q  S  D  T  L  D  V  Q  T  D  M  I  S  D  N  G  V  L  T  E  Q  S  H  D  D  V  K  W  M  E  T  :  L  F  H  F  I  I  S  S  L  K  S  G  R  S  S  V  L  L  D  V  V  V  G  L  L  Y  P  V  I  S  L  Q  V  S  C  N  I  T  S  F  P  L  L  V  F  S  V  V  L  T  F  *  R  D  E  I  T  V  *  R  T  W  H  I  H  T  F  P  P  F  T  D  E  N   : G  D  V  K  *  G  F  V  D  T  G  Q  N  S  F  *  I  A  K  V  E  S  L  F  R  V  P  F  K  E  S  C  A  H  H  S  F  Y  S  Q  *  Y  Q  L  A  Y  K  I  Y  D  S  D  L  F  T  E  F  H  V  *  :  A  H  F  R  P  L  *  G  G  Q  T  T  N  L  A  N  C  R  E  A  T  R  R  *  S  S  *  </first_frame>
            <second_frame>  *  G  N  P  L  V  S  P  S  L  F  Y  A  Q  T  F  G  S  R  C  P  A  I  K  L  I  H  M  K  *  E  Q  V  M  *  T  G  K  L  K  Q  G  I  G  I  I  I  *  *  N  V  H  L  S  L  W  *  R  S  K  V  L  A  S  Q  T  L  W  M  C  K  R  T  *  F  L  T  M  E  Y  *  P  N  S  L  M  M  M  L  N  G  W  R  R :   Y  F  I  S  L  S  H  L  *  S  Q  E  D  P  R  F  C  W  M  L  L  L  V  F  C  I  L  *  Y  L  Y  R  L  V  A  T  S  H  H  S  R  C  L  S  F  Q  L  F  *  H  F  E  G  M  K  L  L  S  E  E  L  G  I  Y  T  L  S  L  H  L  R  M  K  M  :  E  T  S  N  K  D  L  S  T  L  A  K  I  A  F  E  L  L  K  W  R  V  Y  S  E  S  H  L  R  K  V  V  L  T  I  L  S  I  A  N  D  T  N  W  R  T  R  S  T  T  L  T  Y  L  R  S  F  M  Y  R :   H  T  F  V  L  S  K  V  D  K  Q  Q  I  W  Q  T  V  E  K  L  L  A  D  N  Q  V  E </second_frame>
            <third_frame>   E  G  I  H  W  C  H  P  L  C  F  M  L  K  H  S  A  P  G  V  L  Q  S  S  S  S  T  *  S  R  N  K  *  C  E  Q  E  S  *  S  R  E  L  G  S  L  S  S  R  T  C  I  *  A  C  G  E  D  P  K  F  *  P  V  R  H  S  G  C  A  N  G  H  D  F  *  Q  W  S  I  N  R  T  V  S  *  *  C  *  M  D  G  D   : A  I  S  F  H  Y  L  I  S  K  V  R  K  I  L  G  S  A  G  C  C  C  W  S  F  V  S  C  N  I  S  T  G  *  L  Q  H  H  I  I  P  V  A  C  L  F  S  C  F  D  I  L  K  G  *  N  Y  C  L  K  N  L  A  Y  T  H  F  P  S  I  Y  G  *  K  W :   R  R  Q  I  R  I  C  R  H  W  P  K  *  L  L  N  C  *  S  G  E  F  I  Q  S  P  I  *  G  K  L  C  S  P  F  F  L  *  P  M  I  P  I  G  V  Q  D  L  R  L  *  P  I  Y  G  V  S  C  I   : G  T  L  S  S  S  L  R  W  T  N  N  K  F  G  K  L  S  R  S  Y  S  Q  I  I  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75981" stop="75700"/>
                    <exon start="75622" stop="75467"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRESIGVTLSVLCSNIRLQVSCNQAHPHEVGTSNVNRKVEAGNWDHYLVERASELVVKIQSFSQSDTLDVQTDMISDNGVLTEQSHDDVKWMETLFHFIISSLKSGRSSVLLDVVVGLLYPVISLQVSCNITSFPLLVFSVVLTF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75474" stop="75400"/>
                    <exon start="74074" stop="73896"/>
                    <exon start="73643" stop="73562"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFEGMKLLSEELGIYTLSLHLRMKMETSNKDLSTLAKIAFELLKWRVYSESHLRKVVLTILSIANDTNWRTRSTTLTYLRSFMYRHTFVLSKVDKQQIWQTVEKLLADNQVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="80582" PGL_stop="79293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80582" e_stop="80570"/>
            <exon e_start="80482" e_stop="80312"/>
            <exon e_start="79836" e_stop="79668"/>
            <exon e_start="79590" e_stop="79547"/>
            <exon e_start="79453" e_stop="79411"/>
            <exon e_start="79322" e_stop="79293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.703" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.820" e_score="0.988"/>
          <exon-intron don_prob="0.753" acc_prob="0.000" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.583" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80582" e_stop="80570" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.703">
            <gDNA_intron_boundary i_start="80569" i_stop="80483" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="80482" e_stop="80312" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.820">
            <gDNA_intron_boundary i_start="80311" i_stop="79837" i_length="475"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="79836" e_stop="79668" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.753" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79667" i_stop="79591" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79590" e_stop="79547" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79546" i_stop="79454" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79453" e_stop="79411" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.583">
            <gDNA_intron_boundary i_start="79410" i_stop="79323" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79322" e_stop="79293" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80582" stop="80570"/>
              <exon start="80482" stop="80312"/>
              <exon start="79836" stop="79668"/>
              <exon start="79590" stop="79547"/>
              <exon start="79453" stop="79411"/>
              <exon start="79322" stop="79293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604423" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGGAAAAAAAG : GCCTAGTTGGGCACTTATTGACAAAGCATGCATGCATAGTACTTGGAGAGCCTCACAATCATCATATCATATCTTCCGGCTGAGTGCAAATGTATCTCCTTCAGATCATATCATTCATTTGACGGATGATCTTCTTAATCTCTCCTTGCATAGTTATGAAACAGTCCGTGG : ACTTGCTGGAAAATCTCTCTTGAAGATGATGAAGAGATGGCCCTCTACAATCTCAAAATGTGTGCTCAGTCTGAGTCAGAACTTGAAAAATTCTAGCTCACCAGAATGCGCAGTCTTAGGTTCCTGTGCAGTCCTTGCAACGCAAACTGTTCTTAAATGTTTAACAACG : GATTTGAAGGCACTTTCTTCCTTCCTGCTTGGAATTCTGTCAAG : CTCTCATCATGAAACACTAAAAGCTCAGAAAGCCATCAATGAG : CTTTTCATTAAGTACAACATTCATTTTTCT</gDNA_template>
            <first_frame> K  G  K  K   : G  L  V  G  H  L  L  T  K  H  A  C  I  V  L  G  E  P  H  N  H  H  I  I  S  S  G  *  V  Q  M  Y  L  L  Q  I  I  S  F  I  *  R  M  I  F  L  I  S  P  C  I  V  M  K  Q  S  V   : D  L  L  E  N  L  S  *  R  *  *  R  D  G  P  L  Q  S  Q  N  V  C  S  V  *  V  R  T  *  K  I  L  A  H  Q  N  A  Q  S  *  V  P  V  Q  S  L  Q  R  K  L  F  L  N  V  *  Q  R :   I  *  R  H  F  L  P  S  C  L  E  F  C  Q   : A  L  I  M  K  H  *  K  L  R  K  P  S  M  S :   F  S  L  S  T  T  F  I  F   </first_frame>
            <second_frame>  R  E  K  K  :  A  *  L  G  T  Y  *  Q  S  M  H  A  *  Y  L  E  S  L  T  I  I  I  S  Y  L  P  A  E  C  K  C  I  S  F  R  S  Y  H  S  F  D  G  *  S  S  *  S  L  L  A  *  L  *  N  S  P  W  :  T  C  W  K  I  S  L  E  D  D  E  E  M  A  L  Y  N  L  K  M  C  A  Q  S  E  S  E  L  E  K  F  *  L  T  R  M  R  S  L  R  F  L  C  S  P  C  N  A  N  C  S  *  M  F  N  N   : G  F  E  G  T  F  F  L  P  A  W  N  S  V  K  :  L  S  S  *  N  T  K  S  S  E  S  H  Q  *   : A  F  H  *  V  Q  H  S  F  F  </second_frame>
            <third_frame>   G  K  K  R :   P  S  W  A  L  I  D  K  A  C  M  H  S  T  W  R  A  S  Q  S  S  Y  H  I  F  R  L  S  A  N  V  S  P  S  D  H  I  I  H  L  T  D  D  L  L  N  L  S  L  H  S  Y  E  T  V  R  G :   L  A  G  K  S  L  L  K  M  M  K  R  W  P  S  T  I  S  K  C  V  L  S  L  S  Q  N  L  K  N  S  S  S  P  E  C  A  V  L  G  S  C  A  V  L  A  T  Q  T  V  L  K  C  L  T  T  :  D  L  K  A  L  S  S  F  L  L  G  I  L  S  S :   S  H  H  E  T  L  K  A  Q  K  A  I  N  E  :  L  F  I  K  Y  N  I  H  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0019G22.3" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80580" stop="80570"/>
                    <exon start="80482" stop="80312"/>
                    <exon start="79836" stop="79668"/>
                    <exon start="79590" stop="79547"/>
                    <exon start="79453" stop="79411"/>
                    <exon start="79322" stop="79293"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKKRPSWALIDKACMHSTWRASQSSYHIFRLSANVSPSDHIIHLTDDLLNLSLHSYETVRGLAGKSLLKMMKRWPSTISKCVLSLSQNLKNSSSPECAVLGSCAVLATQTVLKCLTTDLKALSSFLLGILSSSHHETLKAQKAINELFIKYNIHFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 31 chains have been computed
$ 
$ memory statistics:
$ 46576 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2117 bytes was the average size of a spliced alignment
$ 27544 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1530 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 31 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:24:40
-->
