<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-02 14:58:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318875" ref_strand="+" ref_description="SGN-U318875        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase | chr3:15233113-15236448 REVERSE | Aliases: F7K15.120(evalue: 1e-171, score=600) genbank/nr: gi|1213629|emb|CAA65237.1| pectinesterase [Prunus persica] >gi|6093744|sp|Q43062|PME_PRUPE Pectinesterase PPE8B precursor (Pectin methylesterase) (PE) (evalue: 4e-178, score=628)">
      <seq>acaataaattttccactcccccccttggtatatatttagtaattaattcattattatcaaccaaatattttttatccattagtctcactagccaaaattaaactacatgcatatgcatgctcattattaataattaattaagtgtgggacgttaatgattatgggtaatttattctgtaaagtactgattttggtacttttatgtctaactactacttgtcctttgataagctatgctgttgatgacaatttttttcaatcagaatgtttgcaagtgccaacatctgagtttttgggttctgttaagtctaccatcaacattgttcgtgaagtcacttctttagtgtcaaaatttgctagcttttttggcgattttcgactttcgaatgccatttctgattgtcttgatctcttggatctctcagcagatgaacttacttggactcttactgctactcagaatcccaaaggaaaaaacaacagtacaggtaatctaagtgcagatttgaagaattatttaagcggagcattaattaatcaagatacatgcatcgaaggattcgagggtacaaatggactagtcaagaatttggttgcgggtaatctcaaccaagtctcatcattagtccgcaacattcttcttatggtccgacccgtctctaggaaaaacgtcttcccctctgaggccaatgccaaacgtgggaagccgtggcaattctcccgagaaagaaaattaacgtcaaatgaagaagatcacaacttattcccttcgtggattaaacgaaaagatagaaggttattgcaagcatcaaattcgactaaaggagtaattacagacgttgtagtagctcttgacggaactggtaattttacccgaattaaagatgcaatagacgcagcaccacaattgagtacaaaaagatttgtgatatatattaagaagggaatttataaagagtatgtggagattagcaagaaaaaatggaatattatgatgattggtgatggaattgatgttactattatttctgggaatagaaattttattgatggatggaccacttatagatctgcaacctttgcggtaaaaggtcaaggatttatagcccgagacataacatttgagaacacatcaggacccgaaaagcaccaagcagtagcatttcgttccgactcagatttatcggtcttgttccgatgcgcggtgaggggttaccaagacactctctacgcccactcaatgcgtcaattctacagagactgtacaattactggcacagtcgatttcatttttggagacggtacagctatttttcaaaactgtcaaatattagcacgaaaaggattgtcacaacagaaaaacacaatcacagcacaaggtcgaaaagaaattgctgaaacaacaggtttcacgattcaattttgtaacatatctggtgaaccggatctattaacttcactcaattctacgtatacgtatcttggaagaccatggaagacgtattcgcgaacagtgatcatgcaatcgtacatgagtaatgtaattagacctcaaggttggttagaatggaacggaaatacatcacttgacacattgtattacgcagagtaccaaaattatgggcctggcgccggtttgggcggtagagttaattggcctggttttcatctgctcaatgattcatcacaggctagtaattttaccgttgctcagttccttttggggaactcatggttacctcctacgggagttaagtataccgctggtctagcagtttaaagttactgatatctatggacatgtaacatcatttttttttcttggatgcattgggcgatttttctttctatttctatcgtttttactggtacgtctatatagatcaagtataaaatacacgtttaatgcgtgattaattaagatattcggaccctctggatgaactatgtattatgagacttaataacttttggaatttgggcagagttttcatctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="+" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="10773" stop="16488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11073" g_stop="11542" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11543" i_stop="13675" i_length="2133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13676" g_stop="14287" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="1082" r_length="612" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14288" i_stop="15263" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15264" g_stop="16189" g_length="926"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="2008" r_length="926" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="+" ref_id="SGN-U318875" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>2008</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11073" e_stop="11542"/>
          <exon e_start="13676" e_stop="14287"/>
          <exon e_start="15264" e_stop="16189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAATTTTCCACTTCCCCCCTTTCTATATATTTATTAATTAATTCATTATTATCAACCAAATAATTTTTATCCATAAGTCTCACTAGCCAAAATTAAACTACATGCATATGCATGCTCATTATTAAAAATTAATTAAGTGTAGGACTTTAATGATTATGGGTAATTTATTCTGTAAAGTACTGATTTTGGTACTTTTATGTCTAACTACTACTTGTCCTTTGATAAGCTATGCTGTTGATGACAATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAGGTATCTATTTATCTATCTATATTACTTGAGTATTAAGTATTTTTTCGTTCTTAATCAAAGATTTCATCCTTAATGTGAGACTTTTAATAGAAATATAAATTTAATAGACTTCAATATGAATATTAGATACGAGCATCTTTAATTTGTTCATTTTTTATGAGTGTTATGCACTTTAGGAAAAGGTTAATGCACTTAATTTTTTGTGCTCTTTTTGAGATGCTTGCTTTAAAACTTTAATTTGCAATTAGGTGTCTGTCTTTGTTACTTTTATCTTTTTGGCCTGTTTTACGCTTTATTGGAGTACTACAAGTTTACTACTCCTTCTATTCACGGTTACTTGTTAAATTTTGAATTGACATGTCTATTATAAAATAATAATATTATTTTATTTTTATTAATAAATAGAATTTCAGACTAATTTATTCATTGTGTTTTTTAAAAACATACTCAACGTTAATAAGTTGAGAATATAATAGAAAAAGATATTATTTTTCTCTTATTTGTAAAAATTACAACTGAAAAAGTGAAACTATAAAATATTTAACAAATAAATAAAAGACCGAGGGAGTACTACTTTTGACTGTTTTGAGTTGGGACTTGGAACCTCCCACGTATAAAAAGTTTTTAGCTCCAATCCTCATTTTTATGCTCTTTTGAATTAGTTCTGCTCATATTAGGGCATCTTTTTAAGTTCTATTATAAGTTATATTATCATCGCTTCTTTTTATGAACCTTATGTTTGAAAATCGCCTAATAAAAGATGTTTATATCGAGTATTTATGTAATTTAGGATGAGTAGGAAATTGTTTTAGTCAAACAAAATATAAATAGAAAAAGCTGAAATCAGAGGCATGTGGGCGGGGAGGAACTAGTAAGGGCCCGCTGGGGTTCATGAGTGACTAGAAATCAACAAAAACTAGGATATGATTAATAATATATCTATGAGTAAAAGTGCCCTTGTATACTGATACAAACTAGAGGAACTACCTTACCTGCCAGACTAAGTTTTGGATTCAATTAAAGCCAAGACTAAGGTTTGGATTCAATGAAAGCCATACTGTACTCAAAATATATACTTTTTAGCTGAATATCATCTTCCCAATGAGTAATCCAAACACAAAATTTGCAATCATGATAAATCAGTGGAACATATAATAAGTCATCTTGCATAGTAATCCACATATCATAAGTCATGGTGTAGTAACCAAAAATCATTTCACAATCGTCATATCATAATAATTAATAGGGGCAACTAAAGAAAATCAATATTCAGTTGAAATTCTTGTTTAAAGTCGTTTGTAAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTCCAAGCCTTATAAGGAGTCCACCCATCTGATTAATCATCGATGTGGGACTTTTGTCATTATTTAACACCCCACCTCACGCCCAGTGCTTAGCATCTGGTGCGTGAACAATTTTAATTTTGGCGACCCCAACATCGGGTAAGACGGGCCCTGCTTTGATACCATGTGAAACTAGGTCTTCGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAGCCTTATAAGGAGTCCACCCATCTCATTAATCACCGATGTGAGACTTTTGTCATTATTTAACATCGTTAAGTCATGTTTTAAATCATTGGCCAATTCATTGAGAAAAATTTATGTTAAAATCACCACTTTAAAATTAAGTCTAATAGTCCCAATTGAGGAAAACAAAAATAGTTGAATAATATTCTTGTCCTAAAAGAAATAAAAATGATATTTTTAGATAATTTCTTATGAAAATTTATCCAGTTTAATTATTGTATAGATCGTACCAAATGCTACCAATTTGCCCAAAAGAATATATATATATGTGTATATACACACATCATTTTCAAATTTGTTGGGTTCATCTTTAGAATAAAAAAAATGTCAAAGCATGATTAACTACCTAACCTATTGTAGTAGTAGATGTGTGTCATTTCATGGGATATCTCAATTTTTACTCGCAAAAGTAAAAATGTAAATTAAACCTTTTTTCCTACTAATTACTTATTTTCAAAACATAAAGATTAGTATATTTTTAACAACACTTGTGGTACGATGGGACAGGAAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGCGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGTACAAATGGACTAGTCAAGAATTTGGTTGCGGGTAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGACCCGTCTCTAGGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCAATTCTCCCGAGAAAGAAAATTAACGTCAAATGAAGAAGATCACAACTTATTCCCTTCGTGGATTAAACGAAAAGATAGAAGGTTATTGCAAGCATCAAATTCGACTAAAGGAGTAATTACAGACGTTGTAGTAGCTCTTGACGGAACTGGTAATTTTACCCGAATTAAAGATGCAATAGACGCAGCACCACAATTGAGTACAAAAAGATTTGTGATATATATTAAGAAGGGAATTTATAAAGAGTATGTGGAGATTAGCAAGAAAAAATGGAATATTATGATGATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTGGTAAGTTTTCATTTTCATTTATTGTCATATTATTATTATTATCATAATTCACGTGGAGTTATGTACTCAATATTTCAAAAATCCCCCCACTTTTATTTAATATTTGATAGGACGCATGATAATAATAATATTTATAAAAATATCACTGTTTATTCTGCTTTTTTAAACATGGCCCATAAAGGTATGTCTGCAAATTTGTTACTTTTTCAATTTTAAAAAATAAATAATGTAATATATTATAATAAATTCTTTATTTAAACTTTTTAATATCATACATTTAATATCATAAAATTGATGACTATTTTGTTATATTTTAAATATTTTTAATAATTAAAATTAATTATTTTTACTATACATTTAGTCAAAATAAAAGCTTGAGTTGATGTTACAACTAAAAAAACGAAATTATTCATCTGAAATTTTTAAAGTTGGTCTTGTTCTTGTGTTTGATCATAACTTTTAAAAATAATATTTAGAATTTAAATTATTATTTAAAATATATAAATATTACTTAAACTTGAAATATAATTTAAATAAGGGTATATTATGATTTTTTTAGGATTTATTAAAAACAAAATAAATCTAAAAAAAAAAAAGTGAAGACAGGGGTTTTGGTTGTATCAGAATTTGGTGAAATAATTTTTAGTCAAAAAAAGAAAGAAAGATAAAAATAACATAAACTAATTCATAAATTTAATCTTTACATTGTTATTATATATCTAACTCTTACCCACTATTATTACTATAATAAGACAAATGCAAATTTCAAAAATGATTTTATTCATCCAAAGTTACGTACCTAATTAAAATGTCGGTGTTCCTTTTTATCATATGCATATATGTCCTTTTTTTAAGTCAACGAGTTTGAGTTTGGATTTTTTTAAGTAAAAATTATAATACAAAAATTGTTAAATAACAAAATATATTTACTATGTCTTTAGTCAAATTTTTGATTCCGTTACTGAACGCAATGCAGCGGTAAAAGGTCAAGGATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAGAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCGCTGGTCTAGCAGTTTAAAGTTACTGATATCTATGGACATGTAACATCATTTTTTTTTCTTGGATGCATTGGGCGATTTTTCTTTCTATTTCTATCGTTTTTACTGGTACGTCTATATAGATCAAGTATAAAATACACGTTTAATGCGTGATTAATTAAGATATTCGGACACTCTGGATGAACTATGTATTATGAGACTTAATAACTTTTGAATTTTGTGCAGAGTTTTCATCTGAAATGATTAAT</genome_strand>
        <mrna_strand>ACAATAAATTTTCCACTCCCCCCCTTGGTATATATTTAGTAATTAATTCATTATTATCAACCAAATATTTTTTATCCATTAGTCTCACTAGCCAAAATTAAACTACATGCATATGCATGCTCATTATTAATAATTAATTAAGTGTGGGACGTTAATGATTATGGGTAATTTATTCTGTAAAGTACTGATTTTGGTACTTTTATGTCTAACTACTACTTGTCCTTTGATAAGCTATGCTGTTGATGACAATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGCGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGTACAAATGGACTAGTCAAGAATTTGGTTGCGGGTAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGACCCGTCTCTAGGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCAATTCTCCCGAGAAAGAAAATTAACGTCAAATGAAGAAGATCACAACTTATTCCCTTCGTGGATTAAACGAAAAGATAGAAGGTTATTGCAAGCATCAAATTCGACTAAAGGAGTAATTACAGACGTTGTAGTAGCTCTTGACGGAACTGGTAATTTTACCCGAATTAAAGATGCAATAGACGCAGCACCACAATTGAGTACAAAAAGATTTGTGATATATATTAAGAAGGGAATTTATAAAGAGTATGTGGAGATTAGCAAGAAAAAATGGAATATTATGATGATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAAAAGGTCAAGGATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAGAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCGCTGGTCTAGCAGTTTAAAGTTACTGATATCTATGGACATGTAACATCATTTTTTTTTCTTGGATGCATTGGGCGATTTTTCTTTCTATTTCTATCGTTTTTACTGGTACGTCTATATAGATCAAGTATAAAATACACGTTTAATGCGTGATTAATTAAGATATTCGGACCCTCTGGATGAACTATGTATTATGAGACTTAATAACTTTTGGAATTTGGGCAGAGTTTTCATCTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="+" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="38089" stop="39242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38389" g_stop="38942" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38389" e_stop="38942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTTCTCCACCGACTGAGGAAGTGGTAAGAGACGGTGAGGAAGGGGAGAATGAACAAGTACAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATTAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCATGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTGCTCATCTAACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATATGAGGATGCCTATGATTTTCTAGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAATTTCAAGGGAACGCCAAATTGTTGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGGCTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="+" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="38715" stop="40757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39015" g_stop="39187" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39188" i_stop="39930" i_length="743">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39931" g_stop="40414" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="658" r_length="485" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39015" e_stop="39187"/>
          <exon e_start="39931" e_stop="40414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAACTGTGGATTTTAGCCTTACAGGTAGCGGCTATGGCAAAATCCTTTCAAGAAGTAGTAGACTTCGTGATAGAGGTGGAAGGAGTGAATCCAGATGACTTCACCATGGCATCGACATCAAAAAGGTTTCGAAAGGTAGGTGAGTTTAATGGTTATTACTCTAGAGGACAGGGTTCAGAATGCTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTAGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAAGAGGAATTGTCGAAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTAGAGGACATGGTGGCCGAGGTAATGGTGGTAACCAAAACGGCCGGGGTGACGGACAAATGGGAACTACTGCAGCGCAACATGGTAGGGGCAACGGGCAAACATGTGATAGGGCCCATTGTTACGCTTTCCCTGGGCAGTCAGAAGCGGAGACATCAGATGCTGTTATCACATGTAATCTTTTGGTTTGTGATTGTATGGCTTCTGTATTATTTGACCCTGGCTCTACATTTTCATATGTATCTTCCGCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTTGTGTTTCTACTCCGGTGGGTGAGTCTTGATAGTTGAAAAAGTGTGTAGGTCTTGTCTTGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTCTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGTGACTACACTTCCAATCCGGTTCGTATTATCTCCTTT-TTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTAGTATGCCACCGGATAGAGATATTGATTTTTGCATCGATCTGGAACCGGGTACTCTCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTACGAGAGTTAAAGGCCCAACTACAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTCGGGGTGCTCCTGTTTTGTTT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="-" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="40338" stop="39409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40038" g_stop="39709" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40038" e_stop="39709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAGAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTACACACTTTTTCAACTATCA-AGACTCACCCACCGGAGTAGAAACACAAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335936" ref_strand="+" ref_description="SGN-U335936        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-62, score=215)">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="+" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="39439" stop="40697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39739" g_stop="40397" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="+" ref_id="SGN-U335936" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39739" e_stop="40397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCCTGGCTCTACATTTTCATATGTATCTTCCGCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTTGTGTTTCTACTCCGGTGGGTGAGTCT-TGATAGTTGAAAAAGTGTGTAGGTCTTGTCTTGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTCTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGTGACTACACTTCCAATCCGGTTCGTATTATCTCCTTT-TTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTAGTATGCCACCGGATAGAGATATTGATTTTTGCATCGATCTGGAACCGGGTACTCTCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTACGAGAGTTAAAGGCCCAACTACAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTCGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318979" ref_strand="-" ref_description="SGN-U318979        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-64, score=244) genbank/nr: Integrase,(evalue: 0, score=853)">
      <seq>ttttttttttttttttttttttttttttttccaaaaaaaaaaaaaatattaaaaaatatatcatttcaaagtgtgtgtttatatgtttcatatagtggctatttatagccatacattaatgcatacaaggtcattagtgatgtcatattccacatgacactacaattattttacactacaattattttacaacactcccccttggatatctatgtaaaagaaagtacatagatatacataatacgctttatttgctgcctcattaaaaaccttaccaggaaaacccaacttgggacaaaaccatagttaaggaaaagagtacaacgcgtatttcactccccctgatgaaaactttacttgatatcttggagacggcgcattccaatcttgtatctcaacttctcaaacgttgatgttggcaatgcctttgtgaataaatcagcaagattatcacttgaacgaatttgttgaacttctatctcaccattttgttgaagatcatgcgtgaaaaagaactttggtgagatatgctttgtccggtctcctttgatgtatcctcctttcaattgagctatacatgcagcattatcttcgtacattgtggttggtatattctttttcaaagaaaaaccacacatttcctgaatatgatgggtcattgatctcaaccagacgcactctcgacttgcttcatggatggctattatttctgcatgatttgaagaagtggctaccaacgtttgcttcattgatcgccaagatattgccgtgtctccacatgtaaacaaatagcctgtttgtgatcgggctttatgcggatctgataaataccctgcatctgcgtaaccaatcagttctgatttggattcattggaatagaataaacccatgtccatggtccctcgaagatatcgaagtatgtgtttaacaccattccaatgtctttttgttggggaggaactgaatcttgccagtagacttactgcaaaacagatatctggtcgagtattgttagcaaggtacattagtgccccgatcgcactaagataaggagtttcatcaccaagaagctcttcatcattctcttgaggtcgaaatggatctgtattgatgtcaagcgatcttaccaccattggagtactcaatggatgtgagttatccatgtaaaaacgctttagtatcttttctgtgtacgttgattgatgaacaagtattccatttgacaaattctcaatctgtaggccaagacaaaattttgtcttgccgagatctttcatttcaaattcttttttcagacactcaatagcttctaaaagctctttaccagtgccaatgatgttcaaatcatcaacatacacagctattattacaaattcagaccccgaccgtttaataaaaatgcagggacaaatcgggtcatttttgtaccctttctttaacaaatattcactcagacgattgtaccacatccttcctgattgtttcaatccatacagagatttctgaagttttattgaacaagtttctcttgaatctttgtatgcttcaggaactttgaatgcttcaggaattttcatgaaaatgttgtggtccaatgagccatatagataggctgtgacaacgtccattagacgcatttcaagtttttcatgaactgccaaatttatgagatatctgaaggtgattgcatctaccactggagaatatgtctccatataatcaatgccaggtctttgagaaaaaccttgagcaacgagtcgggccttatatctcatgacttcatctttctcatttcttttccgtacaaaaacccatttgtaccccactggcttgataccttcaggtgttcggattatcggtccaaaaacttcacgtatttctagtgaagccaattcagcttgaattgcatccttccattttggccaatcatttctctgtctacattcgtgaacagattttggctcaaaatcttcatattgttgcattattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="+" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="48923" stop="51385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49064" g_stop="49101" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="169" r_length="36" r_score="0.658"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49102" i_stop="49206" i_length="105">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49207" g_stop="49252" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="215" r_length="46" r_score="0.804"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49253" i_stop="49311" i_length="59">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49312" g_stop="51085" g_length="1774"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="1990" r_length="1775" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="30" polyA_stop="1"/>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="+" ref_id="SGN-U318979" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>1858</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318979" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49064" e_stop="49101"/>
          <exon e_start="49207" e_stop="49252"/>
          <exon e_start="49312" e_stop="51085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAGATATCATAGTCAAAGATCACCTTGGAATTATACATAGTTATCATCAAAGTTCATATCACCTTGAAATCTTATCACATTGAAAACACTAATACATGAATCCAATTAATTGTTGGATAACTCTAATGGATCATCCACATATACTATACAATGGATTTACAACACTCCCCCTTGGATATCAATAGATTATGTGCCTCGTTAAAACCTTACTAGGAAAAATCCAGTGGGAAAAGGCCTAGTGAAGGAAAAAGAGTACACATATCT-CATAATACGCTTTGAATGTTGCCTCGTTAAAAACCTTACCAGGAAAA-CCAACTTGGGACAAAAAATATAGTTAAGAAAAAGAGTACAACGCGTATTTCGCTCCCCCTGATGAAAACTTTACTTGATATCTCGGAGACGGCGCATTCCAATCTTGTATCTCAACTTCTCAAACGTTGATGTTAGCAATGCCTTAGTGAATAAATCAGCAAGATTATCACTTGAACGAGTTTGTTGAACTTCTATCTCACCATTTTGTCGAAGATCATGCGTGAAAAAGAACTTTGGTGAGATATGCTTTGTCCGATCTCCTTTGATGTATCCTCCTTTCAATTGAGCTATACAAGAAGCATTATCTTCGTACATTGTGGTTGGTATATTCTTTTTCAAAGAAAAACCACACATTTTCTAAATATGATGGGTCATTG-TCTCAACCAGACACACTCTCGACTTGCTTCATGGATGACTATTATTTCTGCATGATTTGAAGAAGTGGCTACCAACATTTGCTTCATTGATCGCAAAGATATTATCGTGTCTCCACATGTAAACAAATAGCCTATTTGTGATCGAGCTTTATGCGGATCAGATAAATACCCTACATCTGCGTAACCAATCAATTCTGACTTGCATTCATTGGAATAGAATAAACTCATGTTCATGGTCCCCCGAAGATATTGAAGTATGTGTTTAGCACCATTACAATGTCTTTTTGTTGGGGAGGAACTGAATCTTGCCAGTAGACCTACTGCAAAACAGATCTCTGGTCGAGTACTTTTAGCAAGGTACATTAGTGCCCCAATCGCACTAAGGTAAGGAGTTTCATCCCCAAGAAGCTCTTCATCATTCTCTTGAGATCGAAATGGATTTGTATTTATGTCAAGCGATCTTACCACCATTGTATTACTCAATGGATGTGAGTTATCCATGTAAAAACACTTTAGTATCTTTTCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAAACTGTAGGCCAAGAAAAAATTTTGTCTTGCCGAGATCTTTCATTTCAAATTCTTTTTTCAGACACTCAAAAGATTCTAAAAGCTCTTTACGAGTGCCAATGATGTTCAAATCATCAACATACACAACTATTATTACAAATTCAGACCCCGACCGTTTAATAAAAATCCAGGGACAAATCGGGTTATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGACGATTGTACCACATCCTTCCTGATTGTTTCAATCCATACAGAGATTTCTGAAGCTTTATTAAACAAATTTCTCTTGAATCTTTGTATGCTTCAGGCACTTTGAATGCTTCAGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGGTGTGACAACGTCCATTAGACGCATTTTTAAGTTTTTCATGAACTGCCAGATTTATGAGATATCTGAAGGTGATTGCATCTACCACTGGAGAATATGTCTCCATATAATCAATGTCATGTCTTTGAGAAAAACCTTGAGCAACGAGTAGGGCTTTATATATCACGACTTCACCTTTCTCATTTCTTTTTCGTACAAAAATCCATTTGTACCCCACTGGCTTGATACCTTCAGGTGTTTGGATTATTCGTCCGAAAACTTTACGTTTTTCTAGTGAAGCCAATTCACCTTGAATTGCATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAAGAGATTTTGGCTCAAAATCTTCATCTTGTTGCATTATTT</genome_strand>
        <mrna_strand>T-TAGTGATGTCATATTC-CACATGACACTACAATTAT.........................................................................................................TTTACACTACAATTATTTTACAACACTCCCCCTTGGATATCTATGT...........................................................AAAAGAAAGTACATAGATATACATAATACGCTTTATTTGCTGCCTCATTAAAAACCTTACCAGGAAAACCCAACTTGGGAC-AAAACCATAGTTAAGGAAAAGAGTACAACGCGTATTTCACTCCCCCTGATGAAAACTTTACTTGATATCTTGGAGACGGCGCATTCCAATCTTGTATCTCAACTTCTCAAACGTTGATGTTGGCAATGCCTTTGTGAATAAATCAGCAAGATTATCACTTGAACGAATTTGTTGAACTTCTATCTCACCATTTTGTTGAAGATCATGCGTGAAAAAGAACTTTGGTGAGATATGCTTTGTCCGGTCTCCTTTGATGTATCCTCCTTTCAATTGAGCTATACATGCAGCATTATCTTCGTACATTGTGGTTGGTATATTCTTTTTCAAAGAAAAACCACACATTTCCTGAATATGATGGGTCATTGATCTCAACCAGACGCACTCTCGACTTGCTTCATGGATGGCTATTATTTCTGCATGATTTGAAGAAGTGGCTACCAACGTTTGCTTCATTGATCGCCAAGATATTGCCGTGTCTCCACATGTAAACAAATAGCCTGTTTGTGATCGGGCTTTATGCGGATCTGATAAATACCCTGCATCTGCGTAACCAATCAGTTCTGATTTGGATTCATTGGAATAGAATAAACCCATGTCCATGGTCCCTCGAAGATATCGAAGTATGTGTTTAACACCATTCCAATGTCTTTTTGTTGGGGAGGAACTGAATCTTGCCAGTAGACTTACTGCAAAACAGATATCTGGTCGAGTATTGTTAGCAAGGTACATTAGTGCCCCGATCGCACTAAGATAAGGAGTTTCATCACCAAGAAGCTCTTCATCATTCTCTTGAGGTCGAAATGGATCTGTATTGATGTCAAGCGATCTTACCACCATTGGAGTACTCAATGGATGTGAGTTATCCATGTAAAAACGCTTTAGTATCTTTTCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAATCTGTAGGCCAAGACAAAATTTTGTCTTGCCGAGATCTTTCATTTCAAATTCTTTTTTCAGACACTCAATAGCTTCTAAAAGCTCTTTACCAGTGCCAATGATGTTCAAATCATCAACATACACAGCTATTATTACAAATTCAGACCCCGACCGTTTAATAAAAATGCAGGGACAAATCGGGTCATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGACGATTGTACCACATCCTTCCTGATTGTTTCAATCCATACAGAGATTTCTGAAGTTTTATTGAACAAGTTTCTCTTGAATCTTTGTATGCTTCAGGAACTTTGAATGCTTCAGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGCTGTGACAACGTCCATTAGACGCA-TTTCAAGTTTTTCATGAACTGCCAAATTTATGAGATATCTGAAGGTGATTGCATCTACCACTGGAGAATATGTCTCCATATAATCAATGCCAGGTCTTTGAGAAAAACCTTGAGCAACGAGTCGGGCCTTATATCTCATGACTTCATCTTTCTCATTTCTTTTCCGTACAAAAACCCATTTGTACCCCACTGGCTTGATACCTTCAGGTGTTCGGATTATCGGTCCAAAAACTTCACGTATTTCTAGTGAAGCCAATTCAGCTTGAATTGCATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAACAGATTTTGGCTCAAAATCTTCATATTGTTGCATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339612" ref_strand="+" ref_description="SGN-U339612        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 9e-34, score=146)">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="-" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="53146" stop="52162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52833" g_stop="52462" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="-" ref_id="SGN-U339612" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52833" e_stop="52462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGTGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTATTAAGTCCCAAATAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGTTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTGAACTTTCTTCTAGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAGTAAACAAACGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCC---GTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332943" ref_strand="+" ref_description="SGN-U332943        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:12587406-12588456 FORWARD | Aliases: None(evalue: 7e-76, score=280) genbank/nr: gi|15144515|gb|AAK84482.1| unknown [Lycopersicon esculentum](evalue: 5e-123, score=443)">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="-" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="54551" stop="53181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54243" g_stop="53481" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="-" ref_id="SGN-U332943" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54243" e_stop="53481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTCTCTCATAA-TTTCATTATATCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAATGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTAAATATCTGACGGTAAAAGATCTACTTGAATTGTGGACTGATTTAAAGGGGAGATATGGCCACCTAAAGGCAACACTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGATTTCAAGATTTTAAGAACGTAATTGCATACAACTCTATTGTATTCAGGATAACCTCCCAGTTAAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGTAAAGACACTTGCTACTTTCCATGCCTCAAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGCTATAATAATGCACGGGGACGTGACAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313003" ref_strand="+" ref_description="SGN-U313003        Tomato 200607 #1 [22 ESTs aligned] arabidopsis/peptide: | Symbol: None | lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme, identical to lysine-ketoglutarate reductase/saccharopine dehydrogenase GI:2052508 from (Arabidopsis thaliana) | chr4:15985201-15991541 REVERSE | Aliases: None(evalue: 0, score=550) genbank/nr: monofunctional(evalue: 0, score=555)">
      <seq>gattatagagttcaaacagaggtcaaaaaaacaaaatttagtacaattgcttgacaagtcagaataattttgccaaaatttgatcaagaactacttggcctttgataatgtttggaaatggagtggttggtatactctcagaggcaaccaacaagtgggaaagacgggctccgctgactccttcacactgtgctagactgctgcatggtggcaggggtaagaccggggtgtcacgtatcattgtgcagccatctacgaagcgcgttcatcatgatgctctctatgaagatgttggatgtaagatatcggaggacttgtcgcaatgtggtctcatcttgggtatcaaacaacccaagttggagatgattcttcctgatagggcctatgccttcttctcccatactcacaaggcacaaaaggaaaatatgcctttgttggataagatcttagctgaaagggcatctctgttcgactatgagcttatagttgaagacactggaaagaggttacttgcatttggtaaatttgctggtagagctggaatgattgattttctacgtggattgggactctggtatctcaatcatggctactcaacaccttttctctcactcggctcatcttacatgtactcttcattggctgcggctaaggctgcagtgatttctgttggtgaagagatagcaactatgggacttccatcgggaatctgtccacttgtatttgttttcactggttctggaaatgtgtctcgtggtgcacaagaaatttttaagcttcttcctcatacatttgtggatccaagaaaacttccagagctacatgagatggccagggatcttactcaatcgaagcaaccatcaaagagaatctttcaagtgtatggttgtgtagcaacctgccaagacatggtggaacatttaaaaccttcaaaatctttcaataaggctgattactacacacatccagagcaatacaaacctgctttccatgagaaaatagctccttatgcatctgtcatagtaaattgtatgtactgggagagaaggtttcctaggttgttaactactaaacagattcaagaccttatgaaaaatggatgcccacttgttggaatctgtgacataacttgtgacgtgggagggtcaattgagttcatcaaccaaaccacatctaaaacctcaaaatctttcaataaggtatgaacctttcaacgattcgtatcattatgacctagaaggtaaaggtgtgatgtgttcagctgtagatattcttcccactgagtttgcgaaagaggcatcccaacatttcggagatattctgtcccactttattgtaagcttagcttcctttagaaatcttgaagagttacctgcacacttgaagagagcttgcatagcccattatggaggtcttactcagttgtatgaatacatacctcgaatgcggaaatctgatctagatgacccttcaatagttctttcaaattccaatgggaacgggaggaagtacaccgtattggtatctctaagtggtcatttgtttgataaatttctcataaacgaggcgttggatattattgaagcagcaggtggctccttccacttggtgaagtgccaagttggtcaaatcacaactgattcgtcatactcagaattggaggttggagctgaagataaatctgttttagataaaatagtcgattctttaacttcccttgctaattcaagcaactctttgggatctcaagacaaggaaaacaacatatctttgaaggttggggaattccaagaaacaatcatggatgagaagtatgattcaaagaaggtcttaattttaggtgctggtcgggtttgcagaccagctgcagaacttttagcgtcaattggtagcacgacatctaggcaatttcctaaatcatctgtaacggctgattttgaagagcaaaattgtgtccaagtgattgttggttctttgtacttgaaggatgcggaggaggttactaaagttattccaaatgcaaaagcaattcagcttgacattacgagtcacgagtctctttctagctggatcgcagaggttgatgttgtcatcagcttactgcctcctagctgccatggtgttatagcaaaggcatgcattgagctgaagaaacatctcgtcacggctagctacgttgatgattctatgttaaagctagaccaagatgcaaaatctgctggaattactattcttggtgaaatgggcttggacccaggaatagatcatatgatggcgatgaaaatgatcaacgaagcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="+" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="56226" stop="66486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56525" g_stop="56586" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56587" i_stop="57220" i_length="634">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57221" g_stop="57514" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="356" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57515" i_stop="57603" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57604" g_stop="57690" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="443" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57691" i_stop="57779" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57780" g_stop="57909" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="573" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57910" i_stop="58104" i_length="195">
            <donor d_prob="0.784" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58105" g_stop="58278" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="747" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58279" i_stop="58424" i_length="146">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.363" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58425" g_stop="58507" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="830" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58508" i_stop="58855" i_length="348">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58856" g_stop="58972" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="831" r_stop="947" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58973" i_stop="59507" i_length="535">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="59508" g_stop="59583" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="1023" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="59584" i_stop="60066" i_length="483">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="60067" g_stop="60238" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1024" r_stop="1195" r_length="172" r_score="0.942"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="60239" i_stop="60424" i_length="186">
            <donor d_prob="0.995" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="60425" g_stop="60525" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1196" r_stop="1296" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="60526" i_stop="60624" i_length="99">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="60625" g_stop="60791" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1297" r_stop="1463" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="60792" i_stop="61218" i_length="427">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="61219" g_stop="61276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1464" r_stop="1521" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="61277" i_stop="62254" i_length="978">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="62255" g_stop="62395" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1522" r_stop="1662" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="62396" i_stop="63602" i_length="1207">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="63603" g_stop="63938" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1663" r_stop="1998" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="63939" i_stop="64602" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="64603" g_stop="64683" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1999" r_stop="2079" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="64684" i_stop="64886" i_length="203">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="64887" g_stop="64952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="2080" r_stop="2145" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="64953" i_stop="65445" i_length="493">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="65446" g_stop="65563" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="2146" r_stop="2263" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="65564" i_stop="66147" i_length="584">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="66148" g_stop="66186" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="2264" r_stop="2302" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="+" ref_id="SGN-U313003" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>2302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56525" e_stop="56586"/>
          <exon e_start="57221" e_stop="57514"/>
          <exon e_start="57604" e_stop="57690"/>
          <exon e_start="57780" e_stop="57909"/>
          <exon e_start="58105" e_stop="58278"/>
          <exon e_start="58425" e_stop="58507"/>
          <exon e_start="58856" e_stop="58972"/>
          <exon e_start="59508" e_stop="59583"/>
          <exon e_start="60067" e_stop="60238"/>
          <exon e_start="60425" e_stop="60525"/>
          <exon e_start="60625" e_stop="60791"/>
          <exon e_start="61219" e_stop="61276"/>
          <exon e_start="62255" e_stop="62395"/>
          <exon e_start="63603" e_stop="63938"/>
          <exon e_start="64603" e_stop="64683"/>
          <exon e_start="64887" e_stop="64952"/>
          <exon e_start="65446" e_stop="65563"/>
          <exon e_start="66148" e_stop="66186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATAGAGTTCAAACAGAGGTCAAAAAAACAAAATTTAGTACAATTGCTTGACAAGTCAGGTAAAAAGTTTTTTTTTTTTTTGCTGTTTTTCTTGTTAGTAAATATGGTGAAATTGGTTATTTTAATTAATTCTATGTGATCCTGTCAAAAATTTATTCTCATTTGATTTCTAGTTAGGTTTTTGTTCTGAGAGTACTGAAATGAAATAGCTTAAAGGAGATTAGTTGGAATTGTTGTTTTGTGATTATTTGAAAATTTATTTTGTTCTAATTCTTTTATTGCGTAATTTTAGCTTAGTGAGGATATGACCTTACGTAGTAGCTTGTGGTGGATATATATTAGGGGTAGTATGTTAGCAACTAGTAGAGCATTGTCTAGTTATTTTATAGTTTCTTGTCGTTCCATTTTTGTTACCATTTGTTGTTTCTTGCACTTTGATTATATCGTATTATTTTGTTGTTGTTGTTGTTGTTCAACATGCTTTGTTATGCTTTTATATCCGTTGCTTCGTTTCCTAGATTGCTTTGATTTGTTTTTTCTTTCGATGGTTTATCAGAAATAATCTCTCTACCTTTGATAGGGGTAGGGTCTGGGTGTGATCCATCCTCCCTAGACCCGAAGATGTAGGACACTACACTGCGTATGTTGATGTTGTTGCTAATATCTTCATTGTGTCTTTGTTTTGTCTCCAAGAATAATTTTGCCAAAATTTGATCAAGAACTACTTGGCCTTTGATAATGTTTGGAAATGGAGTGGTTGGTATACTCTCAGAGGCAACCAACAAGTGGGAAAGACGGGCTCCGCTGACTCCTTCACACTGTGCTAGACTGCTGCATGGTGGCAGGGGTAAGACCGGGGTGTCACGTATCATTGTGCAGCCATCTACGAAGCGCGTTCATCATGATGCTCTCTATGAAGATGTTGGATGTAAGATATCGGAGGACTTGTCGCAATGTGGTCTCATCTTGGGTATCAAACAACCCAAGGTGCTAAATTGTTTTCAAAAAAATGAAAATTTTGATTGACTTCTTGAGTTTTTCTTCTTGAGGTGATAATTGTTTAACCTGAATTGCAGTTGGAGATGATTCTTCCTGATAGGGCCTATGCCTTCTTCTCCCATACTCACAAGGCACAAAAGGAAAATATGCCTTTGTTGGATAAGGTATGTAGCTCTAATTCAAGTCAGCAATATTTACTGAACAGGCGTGGTAATTTTTTTCTCGAACATTAACATTTTCTATGGATATTTAGATCTTAGCTGAAAGGGCATCTCTGTTCGACTATGAGCTTATAGTTGAAGACACTGGAAAGAGGTTACTTGCATTTGGTAAATTTGCTGGTAGAGCTGGAATGATTGATTTTCTACGTGGATTGGGACTCTGTAAGCATTTTGTTTGTAACTTGAAAGATGATTTATTGAATTTTTTGTATAGTTTCTTGTTGGATTTTGCATTAACATAGACCCTGCTGTTTATCTTAGTTGTGGACTCCAGTAATGTGTGTGTGTGTATGTTCTTTTCTTCTTCTTTAGTTTTGGTGTTTTTACTAATACTTAATTTAAGGATGTGCATATCAGGGTATCTCAATCATGGCTACTCAACACCTTTTCTCTCACTCGGCTCATCTTACATGTACTCTTCATTGGCTGCGGCTAAGGCTGCAGTGATTTCTGTTGGTGAAGAGATAGCAACTATGGGACTTCCATCGGGAATCTGTCCACTTGTATTTGTTTTCACTGGTTCTGGAAATGGTACTGTTGATAGTAACTTAGGCTCACTAACTTCAGTTTATTGACATGTTTAGTTCAGCTTCTATTCAAGACATATTCTATTCGCCTATTCCTTGATCTACTCTTTTCACAATAAAATTTTGGGTAAATCTTGATATCCTTTGTAGTGTCTCGTGGTGCACAAGAAATTTTTAAGCTTCTTCCTCATACATTTGTGGATCCAAGAAAACTTCCAGAGCTACATGAGATGGTAAGATTGATCATACTTATTTAAGACAATGTAAACGATATTTGCTTTACTTGATTGAGTTTTTTCTCTTTGATTTTCCCACTTTACTTCACATGAGTCCGGCCGAGTTGATCTTTTGGTGGACCGGCCTGGTCCCGGCCTGGTCCCGGCCTGGCCCATTGACACCCTTAATTTCTGTTCACTTGGAGAAACTGTTTTACTAGCTGTTCTAGAGCTTGTAAATTCTATCTAGTGTGACATTTGAGATTTTGTTCATCTTACCAATTTTTTGATCAACAAGATACTCAAACGCCTATGATCTCCAAGATTCTTCATGCCACATGTCAAATCTTCACTTTCCATGTGTAGGCCAGGGATCTTACTCAATCGAAGCAACCATCAAAGAGAATCTTTCAAGTGTATGGTTGTGTAGCAACCTGCCAAGACATGGTGGAACATTTAAAACCTTCAAAATCTTTCAATAAGGTACATACTATAGTGTTTAAGTATGATTGTCTTCTTTATAATTTTCATTTTCTAAAATTAATAGAATGTGCACTTTATTTCCTTGTGTTATTAAAATAAGCATTGGATACATTTTAGGTCCTTCTCGCATAGGAGGTAATGAAATTCTTAGAAAAATAGAGTTGCAGATATGTGGCTAAAATCTGCTTAAATGATGAAATGTATCTTCATTATATTCTTTTGAGGAAAAAGCTAGTTAAATGTCCCCAATAGCCTAAGTGATGGGTATTTCTCCGTCTGTTGGAACCTTAAAAAAGTATCTGTTCTCACTAACTTGAATAAAGATAGCAAGGAGTCTTTCCTTCTTTAGATTTGGTAGTTTTATGGTCTTTATAGTTCTAAACATGGGAAGGACGAGAACTAAGTTTTAAGTTCGTGCACATTGTATTTGATACCTTTATATTTAACATCATTGAAAATGAAAGCATTCAAGTTCTTTGCCTGTCATGATGTTATCTTATGCATTAGGCTAACAGAATACTTATCATTCGTTCAGGCTGATTACTACACACATCCAGAGCAATACAAACCTGCTTTCCATGAGAAAATAGCTCCTTATGCATCTGTCATAGGTCAGTGATGATCAGGCATTTCGTGTTCATTTTCTAATCATCTTTAGGAAATCTAATTCAGTATCTAGTTTTACGTATTTCCTGCTTGCTCTGACTACACTAGATACATCATGAGCATGCAGTTGTTTTCATTAGTGAATCAAAGCTTTCAATGCTTGATTGTAAGACTCATCACCTAGAACTTTGTATAATATGGAAACCTAGTGTTTTCTTCATCATTTTATGAGTTCCGTAATAGTGTTACTAAAAGAAAATTTTCATATATAAAACTTACGATTTTGACATTCTTATGCAAGTAACTGAATCAGCAATCATTTAGCAGTTTTGTCATTTTTTCTTATTTTGACATTCTTATGTAATTTAACTTTGTTACACCAATTCTACTGTACCTAGTACACGAAATCTTTCAAGTTTTTTCTTTTTATAGTGTTTTCAAGCATTTTGTGAAAATGCGTGTTTGGTAATCCTCCCTGCTTCTTCCAGTAAATTGTATGTACTGGGAGAGAAGGTTTCCTAGGTTGTTAACTACTAAACAGATTCAAGACCTTATGAAAAATGGATGCCCACTTGTTGGAATCTGTGACATAACTTGTGACGTGGGAGGGTCAATTGAGTTCATCAACCAAACCACATCAATAGACTCACCTTTCTTCAGGTACTTTTAGCTTGTTATGAAGATTCTATAGTATCTTTCAGTATGCTACTTCCGTTTCGAATAATACTTTATATACTGCTTCTCACTTTACTTGGAAATATTTCTTTTACTCAGCATTTTATGTTCATTTCCAATTTAATTTACAATGATGCATCTAAGGTCATTACAATTTGTTGAACATGGATTCTAGGTATGAACCTTTCAACGATTCGTATCATTATGACCTAGAAGGTAAAGGTGTGATGTGTTCAGCTGTAGATATTCTTCCCACTGAGTTTGCGAAAGAGGTAATCTCAACATCAAGCGCTACCAACTATAGTTATCGATTTGTCTTTATATCTATGAGTTTATGATATCTGTACCTATGCTATTCTTTGATGTAATAGGCATCCCAACATTTCGGAGATATTCTGTCCCACTTTATTGTAAGCTTAGCTTCCTTTAGAAATCTTGAAGAGTTACCTGCACACTTGAAGAGAGCTTGCATAGCCCATTATGGAGGTCTTACTCAGTTGTATGAATACATACCTCGAATGCGGAAATCTGATCTAGAGTAAGTCATTCATCGTAACTTTATTCTTTTTTATTGTGCTTCTTATCTCCACTCTTTTAGGAACCACTGGATAATTCACGTGTTGAATTGTCGTCAGCAATAGGTATTTTCTGGTCTTGATATACTGTATTCCTCAACCAGTTATTTTCTTGTGCATAGGTCAAATCCTCAACTAGAGTGAAATGACTAAAAAATCCATTTCATATCTATGATAAATAACTGTCTCTTATGTTACCACCATCCGTTCTTAACTTGTTTATCGTTGCACAAATGAAATAATATTAAACTTTTAATATGCGTTGATGTCCATAAGTTCTGAAAAGCATATAACATACCCGTTGAAATAATATTTCTGGAGCTGATATGAAGTACTAGCTTGTATTTTCTAATATGAAGTAATGATGTTCTGTTATCCTTTGACTGGCAGTGACCCTTCAATAGTTCTTTCAAATTCCAATGGGAACGGGAGGAAGTACACCGTATTGGTAAATTCCGATGTGTTCTTTATTTTATTATTGTTGTTAATTGAGCATATGGATATACAATTTGGATTAGTTATATTAATCTGATACAGAAATGGGTTTGAAGAAGGCTAAGAAAAAGGTGTGATCTCAAAACAGGCAACCACTGTCTAAAACTTGTTTTTCATGTAGTAAGTTAGACTATTGGCCCAACTTCCACAATTTGCTTATCTTGAAAAGTATTTTTTTGGCAAAATGGAGTTTTCGAGGAAGAACTTTCAGATAGTTGCAATCTGTGTTTGGCCAAATCATTTAAGAAGCACTTTCGTAAGTACTCCCTCTGTCAACTATTGTTTGGCTGTCCAAAATTAATTGTCAATTTAAACAATCAAGAAACAATTAGTCACTTTTTTCCAATTTTGCCCTTACTTATTACATAACTATTGGTTTCAAAAAGTAGTCATTTTAAAGTTACAAGACTACTTTAATGTGAAAAAAAATTGATTTTACACTTCTCAAAAAGTACAAACCATTTTAATAATGATTGAGAATAGGTTATATTAGTCAAATTGCACCTTATATTAAATTTTTCTTAACGGTTGTGCATGATCTTATCCTGACAAACAATAGTGGACAGAGGGAGTATAATATAGAAGCAATTTTTCCAAAAGTGCTTGAGGCTCAAATGACGAAAAGGACATGTAAAGATTCACTTTAGAATTAGTATAATTAAATAGATAAGTGGATTGAATATGTTGAGGTTGATTTTGACATATACCTAATTGTCCACATTGGATGAGGCTAGATTTTGTCTATATTGTTGTGATTGTTAGGTAATTGAAAATTTTAATAGGGGTTTTCTTATCCTATTTACTTCTTTAATTAGTAAGTGCAGCTAGTTGTTTCTACTCACTGCTGAGTTAAGAATGAAATATATAATTTTCTTACTTCTTTGATGATCTTATTGTCTTATGCTTGTACTCCATGATCTGAAATTGACAGGTATCTCTAAGTGGTCATTTGTTTGATAAATTTCTCATAAACGAGGCGTTGGATATTATTGAAGCAGCAGGTGGCTCCTTCCACTTGGTGAAGTGCCAAGTTGGTCAAATCACAACTGATTCGTCATACTCAGAATTGGAGGTTACTTTATTTCTAACCTTGTTTTACCTTGAAAGAGAAGGAATGTTTATCAAACATATAAATGCAGTTGTTTTATTAGATGAATACTTAGATCAAAGAGAGTTAAAATGAAAATTCATTGCCTAACATGAGAAATTTGTGGAATCTACAAACTTACTTGAAAGTGTTGGTCCATGTTTTATATTTTCGAAACTTGTAAAAATTTTGTTCATTATTTTTGAAGATTCGGAAACCTCTCTAAATTCATGAGGTAGTGGTAAGGTCTGCATACATACTACCCTAATTCCCACACCCCACTTGAGGGATTTCACTAGGTATGTTGTTGTTGTTTTTGTTGTCTCTTTGAAGATCCAATAGAGCTATTTACTGAAAAACAACCCTGCAATCATACACCACTAAAAAATTTGTGGCAGCTATTCTGTCTCACTACATATGCTGGAGGGATATGCATATTCTTGCATCATGCTCTATCCAAATGCACCAAACACGAACAAGAAACAGACATTACATAGTCTTCAAGATGTTAGTATTCCAAAACCCCCAAAACATAATAGTTGTTACTATACTTCTCTCATGAACATGTCATATTCCCATATTTTAGCAGTGCTGCAGTTTCACTTCCTAGTGCTCTGGCCTTTTATCGTACTTTTATCTTCAGGCTATAGTTGTTCTATTTGTTGGAGAAGTGTTCTCACAAATGAATACAATTAAGCTACATAACTACTTTTTCTTTGATCATAAAAATTGTGTGAACTTCTCGTCATTTTCATGCTTCTGTTACCTACTGGCGTTTTTTGCTTTTCATAGCCGGAAATATTTTAACAGAATAGAGCTTCTTAGCTTTGGCATAAGAGAGTTCAATCTTCTGATGTCTCGTCTCTTTTTCGAGATAGTCTGAAAGAAACAAAGCAATGAATTTCTCCTGAGAATTACACGGGTTTCTATAGACTGTCAAGGTAGCCAAAAACAAAGACGAAAACGCCAATTACTTTCTGGTGTCACTTTAAAACTTTCAGGTTCTTGTTGATAAATCCTAAAGCTACAGTTCGATTTTTCAGTGTCAAAACAAAACTTCAAGTTGTGATTTTCATGCTGTTCTTGGTTAAGGTGCTTGTTTTTTGTGGTTTTTTCAGTCATGATATTTACCTCTAAATGATGCAAAACTTGATGATTCTTACTTCCCTTCTGCTTTCATTATTTGGGACAGGTTGGAGCTGAAGATAAATCTGTTTTAGATAAAATAGTCGATTCTTTAACTTCCCTTGCTAATTCAAGCAACTCTTTGGGATCTCAAGACAAGGAAAACAACATATCTTTGAAGGTTGGGGAATTCCAAGAAACAATCATGGATGAGAAGTATGATTCAAAGAAGGTCTTAATTTTAGGTGCTGGTCGGGTTTGCAGACCAGCTGCAGAACTTTTAGCGTCAATTGGTAGCACGACATCTAGGCAATTTCCTAAATCATCTGTAACGGCTGATTTTGAAGAGCAAAATTGTGTCCAAGTGATTGTTGGTTCTTTGTACTTGAAGGATGCGGAGGAGGTATGCATGTATATCAATTTTCATGTGACTTCATTGATCACTCTTATTTAAAAAGGAACTCGAGATTTCATTTATGTACATTGGAAGTTTGATGGTGTCTTTTCACTAACAAAACTTCATATAAATCTGTGTCTTCGTTGTCCTAATATCTTATTTTAGAGATTGTGTAAGATTTATTTGTTTTTTGTGATTTTATTTCTGTACATTGGAAGTTCGATGGTATGTTTTAACAAATCTTCATATAAGTTTGTGTCTTCATTGTCCTAATATTATATTTTTAAAGGATTGTTAAGATTTATTTCTTCTTATGTTCTCGTCTTTTTTCCACATCATATTATATATGCTCGTCTTCTTTGATTCTTCTCTCCAGATTCTTCGTTTACCAGCTTTGTTTCTGCAGTTAATGTTTTTTCCTGCCCCTGTGTCCATGGCTATGGTTTTTCTGTTCTTTTCTTGTTTGATTTGGATATGTTACAGCATGAAGTGACAATCTGTATTTGATATTGTTATCAATTATCTATTGTATTGTCCATTTACTGCATCTTGATTATAGACAATATAGTTTCATCTACTATTTGCATGTTATGGTTTGAGCTCTATGTTTTCGCTTATAGACCTCTATGCTTTATTTTTTTCTGTTATTAATTGGGTTTTAGTAGTACAGGTTACTAAAGTTATTCCAAATGCAAAAGCAATTCAGCTTGACATTACGAGTCACGAGTCTCTTTCTAGCTGGATCGCAGAGGTATTGCCTTTTGATTGCGTATTGTGGTGAAATATTCTTCTTTTTGAAAAAAATGGCCTTTAAGACAAGAAGTGGTAGTGCAAGGGTATTTTATGTTTTGTGAAGCCTTCCCTAATACTTAACATAGCGCTAGGTCTCTTTGATTTTATGTATGTTGTCAATAAGTGACTCTGTCTCATGCTGTTAGTTTTGTCATCGAGCAGGTTGATGTTGTCATCAGCTTACTGCCTCCTAGCTGCCATGGTGTTATAGCAAAGGCATGCATTGAGGTATTTGTTTTCCCATCGTTTCCTTTCTTTCTTATGGGTATCATCTCCTTGTAATTACAGATTCCTATCATCTATGGATAATAAAAGATGGCCCTGATGAATGGTAAAGCTAGAAGTGTTGACTACCTCTTGAACAGTTTGATTTCTAGATAGATAAAATGTAAATCAGTTCTTGAATTTTCGTTAGAAGTCTACGGGTGCAAAAGTCCCTTTGACGATGCCTGAGGATGGTGAACAACAATGTAATAGACCTTTCAGGGTTATAAGCCACATAAAAAGAAGTGCCCTAGATTGTGCTACTGAAACAAATGAATCTTGAATAATTTTATGAGTCATAATTCAATCAAATGTACCGAACCATGGGCCAAGAAATCAGTCCTTACAACTTTTTCTGAGGAAAAATGTCAACATTTATAAACTAAAATATCTCTAGAACACTCATGAACTTCTGATTTACTCATACTAAAGTGCAACTTGAAATCTACTGATGCAGCTGAAGAAACATCTCGTCACGGCTAGCTACGTTGATGATTCTATGTTAAAGCTAGACCAAGATGCAAAATCTGCTGGAATTACTATTCTTGGTGAAATGGGCTTGGACCCAGGAATAGGTAACCTTCACCTCACAAAATCAAATGTTCTACAGTTCCATTTTTTTGTGTGTGACAAAGTTGACCTCAGTTAAATGTTCTCCTGTATATAAGTAGCTTGAATAAGACCGTCAATGAATTTGTTTGAAACTTCTTCACGGTATGATATTTCCTCTGAATGTGATTGTGCATAACCTGTGTTAATGGATACAGATGGTACTGCATTTCCAAGTTCGAGAAAATAAAAGTAGTGCCATACAATACTCATGAATAGCTATGATCCCTTAAGTTTGTCAATAATGAGCACATGTTTTGGTCTTCATCAAATATTTGACTCGTCTCTGGTTGTTAGATTTTACGGAAACTAAACAAAGAAAGATTAACCAAGATATACCGTAAAGTCCCATCAAACTCCAGAAACTACTACACCAAAAATTCTCATATACTAGGTGTATGCTAAAATTTGGATAGTCTTTTACAACAAAAATATCCAATGTTCTATACCAAGGGGCAGATAGTACAGTGTTATTAGTCTAAATCTTTCGTGGGAAGACAATTATGGTTTTACCAATCATACGCTAACAGTGGCACATATTTTATTGTAGATCATATGATGGCGATGAAAATGATCAACGAAGCCCATG</genome_strand>
        <mrna_strand>GATTATAGAGTTCAAACAGAGGTCAAAAAAACAAAATTTAGTACAATTGCTTGACAAGTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATTTTGCCAAAATTTGATCAAGAACTACTTGGCCTTTGATAATGTTTGGAAATGGAGTGGTTGGTATACTCTCAGAGGCAACCAACAAGTGGGAAAGACGGGCTCCGCTGACTCCTTCACACTGTGCTAGACTGCTGCATGGTGGCAGGGGTAAGACCGGGGTGTCACGTATCATTGTGCAGCCATCTACGAAGCGCGTTCATCATGATGCTCTCTATGAAGATGTTGGATGTAAGATATCGGAGGACTTGTCGCAATGTGGTCTCATCTTGGGTATCAAACAACCCAAG.........................................................................................TTGGAGATGATTCTTCCTGATAGGGCCTATGCCTTCTTCTCCCATACTCACAAGGCACAAAAGGAAAATATGCCTTTGTTGGATAAG.........................................................................................ATCTTAGCTGAAAGGGCATCTCTGTTCGACTATGAGCTTATAGTTGAAGACACTGGAAAGAGGTTACTTGCATTTGGTAAATTTGCTGGTAGAGCTGGAATGATTGATTTTCTACGTGGATTGGGACTCT...................................................................................................................................................................................................GGTATCTCAATCATGGCTACTCAACACCTTTTCTCTCACTCGGCTCATCTTACATGTACTCTTCATTGGCTGCGGCTAAGGCTGCAGTGATTTCTGTTGGTGAAGAGATAGCAACTATGGGACTTCCATCGGGAATCTGTCCACTTGTATTTGTTTTCACTGGTTCTGGAAATG..................................................................................................................................................TGTCTCGTGGTGCACAAGAAATTTTTAAGCTTCTTCCTCATACATTTGTGGATCCAAGAAAACTTCCAGAGCTACATGAGATG............................................................................................................................................................................................................................................................................................................................................................GCCAGGGATCTTACTCAATCGAAGCAACCATCAAAGAGAATCTTTCAAGTGTATGGTTGTGTAGCAACCTGCCAAGACATGGTGGAACATTTAAAACCTTCAAAATCTTTCAATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATTACTACACACATCCAGAGCAATACAAACCTGCTTTCCATGAGAAAATAGCTCCTTATGCATCTGTCATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTGTATGTACTGGGAGAGAAGGTTTCCTAGGTTGTTAACTACTAAACAGATTCAAGACCTTATGAAAAATGGATGCCCACTTGTTGGAATCTGTGACATAACTTGTGACGTGGGAGGGTCAATTGAGTTCATCAACCAAACCACATCTAAAACCTCAAAATCTTTCAA..........................................................................................................................................................................................TAAGGTATGAACCTTTCAACGATTCGTATCATTATGACCTAGAAGGTAAAGGTGTGATGTGTTCAGCTGTAGATATTCTTCCCACTGAGTTTGCGAAAGAG...................................................................................................GCATCCCAACATTTCGGAGATATTCTGTCCCACTTTATTGTAAGCTTAGCTTCCTTTAGAAATCTTGAAGAGTTACCTGCACACTTGAAGAGAGCTTGCATAGCCCATTATGGAGGTCTTACTCAGTTGTATGAATACATACCTCGAATGCGGAAATCTGATCTAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCTTCAATAGTTCTTTCAAATTCCAATGGGAACGGGAGGAAGTACACCGTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTAAGTGGTCATTTGTTTGATAAATTTCTCATAAACGAGGCGTTGGATATTATTGAAGCAGCAGGTGGCTCCTTCCACTTGGTGAAGTGCCAAGTTGGTCAAATCACAACTGATTCGTCATACTCAGAATTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCTGAAGATAAATCTGTTTTAGATAAAATAGTCGATTCTTTAACTTCCCTTGCTAATTCAAGCAACTCTTTGGGATCTCAAGACAAGGAAAACAACATATCTTTGAAGGTTGGGGAATTCCAAGAAACAATCATGGATGAGAAGTATGATTCAAAGAAGGTCTTAATTTTAGGTGCTGGTCGGGTTTGCAGACCAGCTGCAGAACTTTTAGCGTCAATTGGTAGCACGACATCTAGGCAATTTCCTAAATCATCTGTAACGGCTGATTTTGAAGAGCAAAATTGTGTCCAAGTGATTGTTGGTTCTTTGTACTTGAAGGATGCGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAAGTTATTCCAAATGCAAAAGCAATTCAGCTTGACATTACGAGTCACGAGTCTCTTTCTAGCTGGATCGCAGAG...........................................................................................................................................................................................................GTTGATGTTGTCATCAGCTTACTGCCTCCTAGCTGCCATGGTGTTATAGCAAAGGCATGCATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGAAACATCTCGTCACGGCTAGCTACGTTGATGATTCTATGTTAAAGCTAGACCAAGATGCAAAATCTGCTGGAATTACTATTCTTGGTGAAATGGGCTTGGACCCAGGAATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATATGATGGCGATGAAAATGATCAACGAAGCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334069" ref_strand="+" ref_description="SGN-U334069        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme, identical to lysine-ketoglutarate reductase/saccharopine dehydrogenase GI:2052508 from (Arabidopsis thaliana) | chr4:15985201-15991541 REVERSE | Aliases: None(evalue: 7e-36, score=147) genbank/nr: gi|23193174|gb|AAN14410.1| bifunctional lysine-ketoglutarate reductase/saccharopine dehydrogenase [Gossypium hirsutum](evalue: 3e-40, score=168)">
      <seq>ccatgtcgaaggtcagaacctttatgattcagctgcaaagcttcgtcttcctgattttccagcctttgcattagagtgtataccaaatcgcaactccttagtgtatggagacttgtatggtatatcagaagaagcatctaccatcttccgaggaacactacgctatgaaggttttagtcaaataatggggacacttgtgaagataggattcttcagtacagaatctactctgattcttaaggatgggatcagacccacgcacagcacgtttttgcttggacttcttgggatcgatggaaagatgttgcctgaatcagtaattgatgaaaaatacatcacaaataggatattagctcttgggcgttgcacagacaaggacactgcagtcaatacagcaaaaacaataatgtaagttgaaaacgactatttaaggtcaatcagttctacttgaagcattgaacaagtatgttctttaaagcgaatatgttggtataaaatgttaagtattgtttgttattcgtaagaaacatgttttggttgaatgataaagagtttacttaatatccaaatagctttttgggattccaagagcccacggaaataccatcatcctgcaaatctccatttgaagtaacatgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="+" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="66556" stop="68304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66860" g_stop="67018" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="170" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67019" i_stop="67531" i_length="513">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67532" g_stop="68004" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="643" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="+" ref_id="SGN-U334069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66860" e_stop="67018"/>
          <exon e_start="67532" e_stop="68004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGAACCTTTATGATTCAGCTGCAAAGCTTCGTCTTCCTGATTTTCCAGCCTTTGCATTAGAGTGTATACCAAATCGCAACTCCTTAGTGTATGGAGACTTGTATGGTATATCAGAAGAAGCATCTACCATCTTCCGAGGAACACTACGCTATGAAGGCAAGTTACATTTACTGGGCTTCATACGAGGCTCTTGGTTAAAGAGTCTCCAGTTCTGACCAATGGCTCAAATGAGATGGGGAATAATGGCAATAGAAAGAAGGCTTTAAAATATTTCTTATATCCATATAATGCATTAAAACGAGAAAAATAGAACGTACAAAAGAAGTTGAAACACCAAATAATCTGTTTTATGGTTTTGGCAAGTCAACTATTCTTGTCAATTGTGTCACTACATCGTCTAAAAGCTTTTATTTATTTATTTATTTAGGTCAGTAAGACACCACTAACATGGGAGCACCTACTTCTTTTTCTTAGTCAAGCATGTGGAATATATTTTGTAAATGACAACCTTGTGGGATGGTTTTATTTATTTGTTTCACTCCTTAAAAAGATTGAACTTTGAATACAACTCAAGTGTGAAATTCTTTAGGATTGTGGGAGTAATAGACTAAATTGTATTCATATACTCAGATTTTTGGTTAACATCTTAAAAATCGATATTTTCCGCAGGTTTTAGTCAAATAATGGGGACACTTGTGAAGATAGGATTCTTCAGTACAGAATCTACTCTGATTCTTAAGGATGGGATCAGACCCACGCACAGCACGTTTTTGCTTGGACTTCTTGGGATCGATGGAAAGATGTTGCCTGAATCAGTAATTGATGAAAAATACATCACAAATAGGATATTAGCTCTTGGGCGTTGCACAGACAAGGACACTGCAGTCAATACAGCAAAAACAATAATGTAAGTTGAAAACGACTATTTAAGGTCAATCAGTTCTACTTGAAGCATTGAACAAGTATGTTCTTTAAAGCGAATATGTTGGTATAAAATGTTAAGTATTGTTTGTTATTCGTAAGAAACATGTTTTGGTTGAATGATAAAGAGTTTACTTAATATCCAAATAGCTTTTTGGGATTCCAAGAGCCCACGGAAATACCATCATCCTGCAAATCTCCATTTGAAGTAACATGTTTGC</genome_strand>
        <mrna_strand>GTCAGAACCTTTATGATTCAGCTGCAAAGCTTCGTCTTCCTGATTTTCCAGCCTTTGCATTAGAGTGTATACCAAATCGCAACTCCTTAGTGTATGGAGACTTGTATGGTATATCAGAAGAAGCATCTACCATCTTCCGAGGAACACTACGCTATGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGTCAAATAATGGGGACACTTGTGAAGATAGGATTCTTCAGTACAGAATCTACTCTGATTCTTAAGGATGGGATCAGACCCACGCACAGCACGTTTTTGCTTGGACTTCTTGGGATCGATGGAAAGATGTTGCCTGAATCAGTAATTGATGAAAAATACATCACAAATAGGATATTAGCTCTTGGGCGTTGCACAGACAAGGACACTGCAGTCAATACAGCAAAAACAATAATGTAAGTTGAAAACGACTATTTAAGGTCAATCAGTTCTACTTGAAGCATTGAACAAGTATGTTCTTTAAAGCGAATATGTTGGTATAAAATGTTAAGTATTGTTTGTTATTCGTAAGAAACATGTTTTGGTTGAATGATAAAGAGTTTACTTAATATCCAAATAGCTTTTTGGGATTCCAAGAGCCCACGGAAATACCATCATCCTGCAAATCTCCATTTGAAGTAACATGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345210" ref_strand="+" ref_description="SGN-U345210        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G31770.1 | Symbol: None | calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase | chr4:15370072-15372602 REVERSE | Aliases: F28M20.40, F28M20_40 (evalue: 5e-44, score=170) genbank/nr: Lariat(evalue: 9e-41, score=170)">
      <seq>gaaagttgaggccgtcttactggttttctgcacatctgcactgcaaatttgctgctttagttcagcatgagaaggatggtcattccactaagtttcttgctcttgataagtgcctccctggtagaaactttttgcaggttatcgaaattgagtccggaccaggaccacatgaacttcaacttgatgaagaatggttggctatcacaagaaagtataatgctgtcttccccttgacaatcaagaatgcgaactataatagtgtgcatctcggcacagaacagtgcctccagtttgtaagaaataagctgcagacaagaggatccaagccgtttgaatttgttcagactgcgccatgctacaaaccttctcaacctgtagctgacggtgtcttccatggtttctataaaaaccctcagacagaagctcttctacagtttctggaacttgagtatcttctcaataaaatgccagaatcaaggaagcctgctgcaaatctagccccattaatttcaggatgttccttcgattacctcggtgaagaatatacccatagatgatatagatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="+" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="107444" stop="111008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107744" g_stop="107880" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107881" i_stop="109115" i_length="1235">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109116" g_stop="109234" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="256" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109235" i_stop="109310" i_length="76">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109311" g_stop="109450" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="396" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109451" i_stop="109750" i_length="300">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109751" g_stop="109870" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="516" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109871" i_stop="110657" i_length="787">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110658" g_stop="110708" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="568" r_length="52" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="+" ref_id="SGN-U345210" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107744" e_stop="107880"/>
          <exon e_start="109116" e_stop="109234"/>
          <exon e_start="109311" e_stop="109450"/>
          <exon e_start="109751" e_stop="109870"/>
          <exon e_start="110658" e_stop="110708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTGAGGCCGTCTTACTGGTTTTCTGCACATCTGCACTGCAAATTTGCTGCTTTAGTTCAGCATGAGAAGGATGGTCATTCCACTAAGTTTCTTGCTCTTGATAAGTGCCTCCCTGGTAGAAACTTTTTGCAGGTCTCTCTCTGCACCTTGCTGTTTACTGAGTCAAGAAGATCTTTTTATAGTTCCAGATAAAGTTAAGGCTGAATACATACACGAACACTTAAACTTGTCGGAATTTTTCATTTAGACACCTAAGCTAAGCATATAACCTATTGAACACTGCATCTAATCTCAAAATGTGCCTATCAGACACTCTTGGTGACATGGCAAGTTGCGTGGTCATCACCTGAACTTGAGCGCGTGATTGACGGAAAAATAGATTTCTGCTGGAAAATTGGTTTCTGGCCTTTTTCCAACTTTTCTTCTTGTACGTTTCATGAGAAGAAGAAATACACCAGCAAATGATTTTTGTGAATTCTTCTTTCTTTTCTTTACTGCTAATAAGTAGAGTTCAGCTCTAGAACAATAATACATGCTTTTAAATCTTCCTTCTTCAGATTCAAGTGGAATCACATCTTCCATAGTGCTGGCCATCAGACTCCTTCCTCTTGTACTATTCTTCTCATCCTTTTAGCCGAAATCCTTCCCTCAAAGTCTTTAAACTGATTTGTATAATCCCACAAATTTGGAATCTATTTTTTTGAGAATTGGTAACATTGTATTCTTCGGCATTAAGGATATAAGGATATGTTGGAGACCGTTAGAAAATTAGAAAAGAACAAAAAGAGTAATACTTACAATGATCCTAAGAATTCTAAAAGTTGATCTGAATTCTCTATTCCTATCTCTTTAAACCAACATATAAGTCCAATCTGGAACCTATTGGTCTTCACTGGAATATTGTCAGGTGAGATCTAAATTTATGTTTTTCCTCAATATAATTCTGCCAAATCTAGGAACGCTTTTGTGACCCTAGTCTGATTTTGTTTTCCTCTGTTTCACCGAATTATTTTTAAGGCTCCAAATCTGAATTATTTCTGCTTCTCGGGGAAATAACCTCATTGGAGAGGAGATTTACAGAAGTCTTTTCAGGCCAACTCACTTTTCTTTTGGCTTTTTGTTATAGTTGCTGACATGTCTTTTTGTCATTGCTTTTACTTGCCAAGTCACATTAAGTGATTTTCACGCATTTCAAGTTGTTTAGACTTGTGAAATAAGTAATCAATAGACACAATTTGACTGGAGTTAAAGTGTTCAATAGGTACAAATCTTAGTTAAGTGTTTAGATGTAAAAAATCGGAAAAGTTTTAAGGGGCCGCATATGTATCCAGCCTAAATTTATGTGTGTGACTCACTGAGTTTTATAGGTTATCGAAATTGAGTCCGGACCAGGACCACATGAACTTCAACTTGATGAAGAATGGTTGGCTATCACAAGAAAGTATAATGCTGTCTTCCCCTTGACAATCAAGAATGCGAACTATAAGTATGTACTTTTCATAGTTCTGTTTTTATCATGTTTCTGGGAAATCAACTGGTAACTCCCTCCATTTTGATTGTAGTAGTGTGCATCTCGGCACAGAACAGTGCCTCCAGTTTGTAAGAAATAAGCTGCAGACAAGAGGATCCAAGCCGTTTGAATTTGTTCAGACTGCGCCATGCTACAAACCTTCTCAACCTGTAGCTGACGGTGTCTTCCATGGTGATGATCTGTACACCAGGACATTATCTATGCAATTACTTTTTTTTGTGTGTCATAAGTTGCTCACTGGAGTCAACTGAGTCTGTTATAATCATCTAGAATAAAAACTGAGTTTGTCCTGTACTACTCAACAAGTGAGATTAAAATTTTGTCCAGTAGAAGCTCACTGTTATCTCCATTTTGAAGTCTATGAGTACTGTTTAGTGTAGTACTAGTTCTTGTTATTATCTAGTAGTATATTGAAAGATACTTTATAGCAGTGTGGATGTTGATTCTTTCTCTTTTCCGTTTCCTTCACAGGTTTCTATAAAAACCCTCAGACAGAAGCTCTTCTACAGTTTCTGGAACTTGAGTATCTTCTCAATAAAATGCCAGAATCAAGGAAGCCTGCTGCAAATCTAGCCCCATTAATTTCAGGATGTAAACTTTCTTCCTCTATTGTTCGTAAAATTATTTCGCCTTATGATTCATGATCCGCTATCTGTATTCAACTGACACTAGTTGAAGTTTTATGTACTGTTCTTTGATTATTATGACACAGAGAGAAGAAAACCAGAAGTTCTAACATTTGAAGTATTTGGTTGTCTACATTTTTCTTCTGGAAAAATGATTCTCTGACATAAAATATTGAACATTTTCACTTCTCCTCCAGAATTTTTTCTCTCTGATATAATATAGAGCCACCTTAGATACAGTTTAGTTAGTAATGTATTTGACGTTCACAAAGGATTCAAATAGCTAGTGCAAGAATGAACTGATGCTAAAGCTTAAGCTCTGGTTAGTTTAGGAATATTCCATGTACATGACAAGCATAATTTCTATACGGAATCCCTTTGAAGAGTAATAGATTCTACCCTTCGTTCTTTTACCTTTTACAACTTCTATGACTATTTAGGCGAGTCATAGTTTATTACCTTTCATAAACTTCCTTTGTTGGTTTAAAATTGCATTACCTGCGGCTGCCAGAGATCTGCGATTACATATTCTGTTGTGAACACTGTGTGTGTTATTATGCATTCACTCACATTTTCTTTTGTCAGCATTGTCATCGTACTTTAAACGGTTATGCTATGCAATTTGATTAAGTATAGTTGACGTGTTTCTAGTATAGAGATATCTTGTATATTAAAGTCATAACTTTTCGTTCTTCTATTTTTGTTTATCTAAATAACTGGTTGACTTTTACCTACTTTTAATGCATTCTCAGGTTCCTTCGATTACCTCGGTGAAG-ATATACCCATAGATGATATAGATGATA</genome_strand>
        <mrna_strand>GAAAGTTGAGGCCGTCTTACTGGTTTTCTGCACATCTGCACTGCAAATTTGCTGCTTTAGTTCAGCATGAGAAGGATGGTCATTCCACTAAGTTTCTTGCTCTTGATAAGTGCCTCCCTGGTAGAAACTTTTTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCGAAATTGAGTCCGGACCAGGACCACATGAACTTCAACTTGATGAAGAATGGTTGGCTATCACAAGAAAGTATAATGCTGTCTTCCCCTTGACAATCAAGAATGCGAACTATAA............................................................................TAGTGTGCATCTCGGCACAGAACAGTGCCTCCAGTTTGTAAGAAATAAGCTGCAGACAAGAGGATCCAAGCCGTTTGAATTTGTTCAGACTGCGCCATGCTACAAACCTTCTCAACCTGTAGCTGACGGTGTCTTCCATG............................................................................................................................................................................................................................................................................................................GTTTCTATAAAAACCCTCAGACAGAAGCTCTTCTACAGTTTCTGGAACTTGAGTATCTTCTCAATAAAATGCCAGAATCAAGGAAGCCTGCTGCAAATCTAGCCCCATTAATTTCAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTCGATTACCTCGGTGAAGAATATACCCATAGATGATATAGATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344867" ref_strand="+" ref_description="SGN-U344867        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|53749448|gb|AAU90304.1| hypothetical protein PGEC591C22.20 [Solanum demissum] (evalue: 2e-10, score=69.3)">
      <seq>tttttggaaaataaacacaatagaaaagtcgaaagtcagatatgttttagttaattaatccttatattttttgtatttgattgtgatttgatgcgattttgtttgtataataattattcatacgtatttgcgttttgaattattatgtattttaatcaatgaaattatctttattttttttgagtttgttgacatttttttttccaaatccagatgtactgatatattgttaaaataaagagtattctgatttgaatgtgttttgcaacttttgtataaaaaattatatatccaacaaaatacgtatgtgatgcataaaagtttagacaaggaataatgttcgaattgtatatttgaattactattgtaactttattgttttgtattcttgatacaaattaatagtaatgtcattattttcgtatctagtattgactatgattttttttactacaaagcatatatgcggaacattagttttataataaagcattttggacattggactgaagataattgctatgttgattacacaactgaggcaattatgattaaagaatatgcatcgtataaagatttagttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0070D18-ETJL4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLe0070D18.1" temp_strand="-" temp_description="C07SLe0070D18.1  AC234365.1 htgs_phase:2 submitted_to_sgn_as:gi|222080333|gb|AC234365.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0070D18, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="130066" stop="128869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129766" g_stop="129169" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0070D18.1" gen_strand="-" ref_id="SGN-U344867" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0070D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129766" e_stop="129169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGGAAAATAAACAAAATAGAAAAGTCGAAAGTCAGGTATGTTTTAGTTAATTAATCCTAACATTTTTTGTATTTGATTGTGATTTGATGCGATTTTGTTTGTATAATAATTATTCATACGTATTTGTGTTTTGAATTATTATGTAATTTAATCAATGCGATTATCTCTATTTTTTCTGGGTTTGTTGACATTGTATTTTTTAAATCCAGATTTACTGATATATTGATAAAATAAAGAGTATTCTGATTTGAATTTGTTTTTGTAACTTTTGTATAAAAAATTATATATCCAACAGAATACGTATGTGATGCATCAAAAGTTTAGACAAGGAATAATGTTTGAATCGTATATTTGAATTACTATTGTAACTTTATTGTTTTGTATTATTGATACAAATTAATGGTAATGTCATTATTTTCGTATCTAATATTGACTATGTGATTTTTATTTTTTTTACTAAAAAGCATATATGGGGAGCATTAGTTTTATAATAAAGCATTCTGGACATTGGACTGAAGATAATTGCTATGTTGATTACTCAACTGAGGCAATTATGATTAAAGAATATGCATCGTATAAAGATTTAGTTGATGA</genome_strand>
        <mrna_strand>TTTTTGGAAAATAAACACAATAGAAAAGTCGAAAGTCAGATATGTTTTAGTTAATTAATCCTTATATTTTTTGTATTTGATTGTGATTTGATGCGATTTTGTTTGTATAATAATTATTCATACGTATTTGCGTTTTGAATTATTATGTATTTTAATCAATGAAATTATCTTTATTTTTTTTGAGTTTGTTGACATTTTTTTTTCCAAATCCAGATGTACTGATATATTGTTAAAATAAAGAGTATTCTGATTTGAATGTG-TTTTGCAACTTTTGTATAAAAAATTATATATCCAACAAAATACGTATGTGATGCAT-AAAAGTTTAGACAAGGAATAATGTTCGAATTGTATATTTGAATTACTATTGTAACTTTATTGTTTTGTATTCTTGATACAAATTAATAGTAATGTCATTATTTTCGTATCTAGTATTGACTA--TG------ATTTTTTTTACTACAAAGCATATATGCGGAACATTAGTTTTATAATAAAGCATTTTGGACATTGGACTGAAGATAATTGCTATGTTGATTACACAACTGAGGCAATTATGATTAAAGAATATGCATCGTATAAAGATTTAGTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="11073" PGL_stop="16189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11073" e_stop="11542"/>
            <exon e_start="13676" e_stop="14287"/>
            <exon e_start="15264" e_stop="16189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="0.981"/>
          <exon-intron don_prob="0.998" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="11073" e_stop="11542" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="11543" i_stop="13675" i_length="2133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13676" e_stop="14287" e_length="612"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.963">
            <gDNA_intron_boundary i_start="14288" i_stop="15263" i_length="976"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="15264" e_stop="16189" e_length="926"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11073" stop="11542"/>
              <exon start="13676" stop="14287"/>
              <exon start="15264" stop="16189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318875" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATAAATTTTCCACTTCCCCCCTTTCTATATATTTATTAATTAATTCATTATTATCAACCAAATAATTTTTATCCATAAGTCTCACTAGCCAAAATTAAACTACATGCATATGCATGCTCATTATTAAAAATTAATTAAGTGTAGGACTTTAATGATTATGGGTAATTTATTCTGTAAAGTACTGATTTTGGTACTTTTATGTCTAACTACTACTTGTCCTTTGATAAGCTATGCTGTTGATGACAATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAG : GAAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGCGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGTACAAATGGACTAGTCAAGAATTTGGTTGCGGGTAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGACCCGTCTCTAGGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCAATTCTCCCGAGAAAGAAAATTAACGTCAAATGAAGAAGATCACAACTTATTCCCTTCGTGGATTAAACGAAAAGATAGAAGGTTATTGCAAGCATCAAATTCGACTAAAGGAGTAATTACAGACGTTGTAGTAGCTCTTGACGGAACTGGTAATTTTACCCGAATTAAAGATGCAATAGACGCAGCACCACAATTGAGTACAAAAAGATTTGTGATATATATTAAGAAGGGAATTTATAAAGAGTATGTGGAGATTAGCAAGAAAAAATGGAATATTATGATGATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTG : CGGTAAAAGGTCAAGGATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAGAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCGCTGGTCTAGCAGTTTAAAGTTACTGATATCTATGGACATGTAACATCATTTTTTTTTCTTGGATGCATTGGGCGATTTTTCTTTCTATTTCTATCGTTTTTACTGGTACGTCTATATAGATCAAGTATAAAATACACGTTTAATGCGTGATTAATTAAGATATTCGGACACTCTGGATGAACTATGTATTATGAGACTTAATAACTTTTGAATTTTGTGCAGAGTTTTCATCTGAAATGATTAAT</gDNA_template>
            <first_frame> T  I  N  F  P  L  P  P  F  L  Y  I  Y  *  L  I  H  Y  Y  Q  P  N  N  F  Y  P  *  V  S  L  A  K  I  K  L  H  A  Y  A  C  S  L  L  K  I  N  *  V  *  D  F  N  D  Y  G  *  F  I  L  *  S  T  D  F  G  T  F  M  S  N  Y  Y  L  S  F  D  K  L  C  C  *  *  Q  F  F  S  I  R  M  F  A  S  A  N  I  *  V  F  G  F  C  *  V  Y  H  Q  H  C  S  *  S  H  F  F  S  V  K  I  C  *  L  F  W  R  F  S  T  F  E  C  H  F  *  L  S  *  S  L  G  S  L  S  R  *  T  Y  L  D  S  Y  C  Y  S  E  S  Q  R :   K  K  Q  Q  Y  R  *  S  K  C  R  F  E  E  L  F  K  R  S  I  N  *  S  R  Y  M  H  R  R  I  R  G  Y  K  W  T  S  Q  E  F  G  C  G  *  S  Q  P  S  L  I  I  S  P  Q  H  S  S  Y  G  P  T  R  L  *  E  K  R  L  P  L  *  G  Q  C  Q  T  W  E  A  V  A  I  L  P  R  K  K  I  N  V  K  *  R  R  S  Q  L  I  P  F  V  D  *  T  K  R  *  K  V  I  A  S  I  K  F  D  *  R  S  N  Y  R  R  C  S  S  S  *  R  N  W  *  F  Y  P  N  *  R  C  N  R  R  S  T  T  I  E  Y  K  K  I  C  D  I  Y  *  E  G  N  L  *  R  V  C  G  D  *  Q  E  K  M  E  Y  Y  D  D  W  *  W  N  *  C  Y  Y  Y  F  W  E  *  K  F  Y  *  W  M  D  H  L  *  I  C  N  L  C :   G  K  R  S  R  I  Y  S  P  R  H  N  I  *  E  H  I  R  T  R  K  A  P  S  S  S  I  S  F  R  L  R  F  I  G  L  V  P  M  R  G  E  G  L  P  R  H  S  L  R  P  L  N  A  S  I  L  Q  R  L  Y  N  Y  W  H  S  R  F  H  F  W  R  R  Y  S  Y  F  S  K  L  S  N  I  S  T  K  R  I  V  T  T  E  K  H  N  H  S  T  R  S  K  R  N  C  *  N  N  R  F  H  D  S  I  L  *  H  I  W  *  T  G  S  I  N  F  T  Q  F  Y  V  Y  V  S  W  K  T  M  E  D  V  F  A  N  S  D  H  A  I  V  H  E  *  C  N  *  T  S  R  L  V  R  M  E  R  K  Y  I  T  *  H  I  V  L  R  R  V  P  K  L  W  A  W  R  R  F  G  R  *  S  *  L  A  W  F  S  S  A  Q  *  F  I  T  G  *  *  F  Y  R  C  S  V  P  F  G  E  L  M  V  T  S  Y  G  S  *  V  Y  R  W  S  S  S  L  K  L  L  I  S  M  D  M  *  H  H  F  F  F  L  D  A  L  G  D  F  S  F  Y  F  Y  R  F  Y  W  Y  V  Y  I  D  Q  V  *  N  T  R  L  M  R  D  *  L  R  Y  S  D  T  L  D  E  L  C  I  M  R  L  N  N  F  *  I  L  C  R  V  F  I  *  N  D  *  </first_frame>
            <second_frame>  Q  *  I  F  H  F  P  P  F  Y  I  F  I  N  *  F  I  I  I  N  Q  I  I  F  I  H  K  S  H  *  P  K  L  N  Y  M  H  M  H  A  H  Y  *  K  L  I  K  C  R  T  L  M  I  M  G  N  L  F  C  K  V  L  I  L  V  L  L  C  L  T  T  T  C  P  L  I  S  Y  A  V  D  D  N  F  F  Q  S  E  C  L  Q  V  P  T  S  E  F  L  G  S  V  K  S  T  I  N  I  V  R  E  V  T  S  L  V  S  K  F  A  S  F  F  G  D  F  R  L  S  N  A  I  S  D  C  L  D  L  L  D  L  S  A  D  E  L  T  W  T  L  T  A  T  Q  N  P  K   : G  K  N  N  S  T  G  N  L  S  A  D  L  K  N  Y  L  S  G  A  L  I  N  Q  D  T  C  I  E  G  F  E  G  T  N  G  L  V  K  N  L  V  A  G  N  L  N  Q  V  S  S  L  V  R  N  I  L  L  M  V  R  P  V  S  R  K  N  V  F  P  S  E  A  N  A  K  R  G  K  P  W  Q  F  S  R  E  R  K  L  T  S  N  E  E  D  H  N  L  F  P  S  W  I  K  R  K  D  R  R  L  L  Q  A  S  N  S  T  K  G  V  I  T  D  V  V  V  A  L  D  G  T  G  N  F  T  R  I  K  D  A  I  D  A  A  P  Q  L  S  T  K  R  F  V  I  Y  I  K  K  G  I  Y  K  E  Y  V  E  I  S  K  K  K  W  N  I  M  M  I  G  D  G  I  D  V  T  I  I  S  G  N  R  N  F  I  D  G  W  T  T  Y  R  S  A  T  F   : A  V  K  G  Q  G  F  I  A  R  D  I  T  F  E  N  T  S  G  P  E  K  H  Q  A  V  A  F  R  S  D  S  D  L  S  V  L  F  R  C  A  V  R  G  Y  Q  D  T  L  Y  A  H  S  M  R  Q  F  Y  R  D  C  T  I  T  G  T  V  D  F  I  F  G  D  G  T  A  I  F  Q  N  C  Q  I  L  A  R  K  G  L  S  Q  Q  K  N  T  I  T  A  Q  G  R  K  E  I  A  E  T  T  G  F  T  I  Q  F  C  N  I  S  G  E  P  D  L  L  T  S  L  N  S  T  Y  T  Y  L  G  R  P  W  K  T  Y  S  R  T  V  I  M  Q  S  Y  M  S  N  V  I  R  P  Q  G  W  L  E  W  N  G  N  T  S  L  D  T  L  Y  Y  A  E  Y  Q  N  Y  G  P  G  A  G  L  G  G  R  V  N  W  P  G  F  H  L  L  N  D  S  S  Q  A  S  N  F  T  V  A  Q  F  L  L  G  N  S  W  L  P  P  T  G  V  K  Y  T  A  G  L  A  V  *  S  Y  *  Y  L  W  T  C  N  I  I  F  F  S  W  M  H  W  A  I  F  L  S  I  S  I  V  F  T  G  T  S  I  *  I  K  Y  K  I  H  V  *  C  V  I  N  *  D  I  R  T  L  W  M  N  Y  V  L  *  D  L  I  T  F  E  F  C  A  E  F  S  S  E  M  I  N </second_frame>
            <third_frame>   N  K  F  S  T  S  P  L  S  I  Y  L  L  I  N  S  L  L  S  T  K  *  F  L  S  I  S  L  T  S  Q  N  *  T  T  C  I  C  M  L  I  I  K  N  *  L  S  V  G  L  *  *  L  W  V  I  Y  S  V  K  Y  *  F  W  Y  F  Y  V  *  L  L  L  V  L  *  *  A  M  L  L  M  T  I  F  F  N  Q  N  V  C  K  C  Q  H  L  S  F  W  V  L  L  S  L  P  S  T  L  F  V  K  S  L  L  *  C  Q  N  L  L  A  F  L  A  I  F  D  F  R  M  P  F  L  I  V  L  I  S  W  I  S  Q  Q  M  N  L  L  G  L  L  L  L  L  R  I  P  K  :  E  K  T  T  V  Q  V  I  *  V  Q  I  *  R  I  I  *  A  E  H  *  L  I  K  I  H  A  S  K  D  S  R  V  Q  M  D  *  S  R  I  W  L  R  V  I  S  T  K  S  H  H  *  S  A  T  F  F  L  W  S  D  P  S  L  G  K  T  S  S  P  L  R  P  M  P  N  V  G  S  R  G  N  S  P  E  K  E  N  *  R  Q  M  K  K  I  T  T  Y  S  L  R  G  L  N  E  K  I  E  G  Y  C  K  H  Q  I  R  L  K  E  *  L  Q  T  L  *  *  L  L  T  E  L  V  I  L  P  E  L  K  M  Q  *  T  Q  H  H  N  *  V  Q  K  D  L  *  Y  I  L  R  R  E  F  I  K  S  M  W  R  L  A  R  K  N  G  I  L  *  *  L  V  M  E  L  M  L  L  L  F  L  G  I  E  I  L  L  M  D  G  P  L  I  D  L  Q  P  L  :  R  *  K  V  K  D  L  *  P  E  T  *  H  L  R  T  H  Q  D  P  K  S  T  K  Q  *  H  F  V  P  T  Q  I  Y  R  S  C  S  D  A  R  *  G  V  T  K  T  L  S  T  P  T  Q  C  V  N  S  T  E  T  V  Q  L  L  A  Q  S  I  S  F  L  E  T  V  Q  L  F  F  K  T  V  K  Y  *  H  E  K  D  C  H  N  R  K  T  Q  S  Q  H  K  V  E  K  K  L  L  K  Q  Q  V  S  R  F  N  F  V  T  Y  L  V  N  R  I  Y  *  L  H  S  I  L  R  I  R  I  L  E  D  H  G  R  R  I  R  E  Q  *  S  C  N  R  T  *  V  M  *  L  D  L  K  V  G  *  N  G  T  E  I  H  H  L  T  H  C  I  T  Q  S  T  K  I  M  G  L  A  P  V  W  A  V  E  L  I  G  L  V  F  I  C  S  M  I  H  H  R  L  V  I  L  P  L  L  S  S  F  W  G  T  H  G  Y  L  L  R  E  L  S  I  P  L  V  *  Q  F  K  V  T  D  I  Y  G  H  V  T  S  F  F  F  L  G  C  I  G  R  F  F  F  L  F  L  S  F  L  L  V  R  L  Y  R  S  S  I  K  Y  T  F  N  A  *  L  I  K  I  F  G  H  S  G  *  T  M  Y  Y  E  T  *  *  L  L  N  F  V  Q  S  F  H  L  K  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11203" stop="11542"/>
                    <exon start="13676" stop="14287"/>
                    <exon start="15264" stop="15961"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1647</number_coding_nucleotides>
                  <number_encoded_amino_acids>549</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLIKCRTLMIMGNLFCKVLILVLLCLTTTCPLISYAVDDNFFQSECLQVPTSEFLGSVKSTINIVREVTSLVSKFASFFGDFRLSNAISDCLDLLDLSADELTWTLTATQNPKGKNNSTGNLSADLKNYLSGALINQDTCIEGFEGTNGLVKNLVAGNLNQVSSLVRNILLMVRPVSRKNVFPSEANAKRGKPWQFSRERKLTSNEEDHNLFPSWIKRKDRRLLQASNSTKGVITDVVVALDGTGNFTRIKDAIDAAPQLSTKRFVIYIKKGIYKEYVEISKKKWNIMMIGDGIDVTIISGNRNFIDGWTTYRSATFAVKGQGFIARDITFENTSGPEKHQAVAFRSDSDLSVLFRCAVRGYQDTLYAHSMRQFYRDCTITGTVDFIFGDGTAIFQNCQILARKGLSQQKNTITAQGRKEIAETTGFTIQFCNISGEPDLLTSLNSTYTYLGRPWKTYSRTVIMQSYMSNVIRPQGWLEWNGNTSLDTLYYAEYQNYGPGAGLGGRVNWPGFHLLNDSSQASNFTVAQFLLGNSWLPPTGVKYTAGLAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="38389" PGL_stop="38942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38389" e_stop="38942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="38389" e_stop="38942" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38389" stop="38942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTTCTCCACCGACTGAGGAAGTGGTAAGAGACGGTGAGGAAGGGGAGAATGAACAAGTACAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATTAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCATGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTGCTCATCTAACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATATGAGGATGCCTATGATTTTCTAGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAATTTCAAGGGAACGCCAAATTGTTGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGGCTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  F  S  T  D  *  G  S  G  K  R  R  *  G  R  G  E  *  T  S  T  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  L  G  S  C  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  C  S  G  G  T  T  C  S  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  C  S  S  N  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  S  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  I  S  R  E  R  Q  I  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  G  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  S  P  P  T  E  E  V  V  R  D  G  E  E  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  *  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  H  V  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  A  H  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  Y  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  L  L  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  A  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  R  K  W  *  E  T  V  R  K  G  R  M  N  K  Y  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  M  F  R  R  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  L  L  I  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  M  R  M  P  M  I  F  *  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  N  F  K  G  T  P  N  C  C  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  W  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38525" stop="38941"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAYLSGLSDQGQTPPVFSAPAPHVPEVQHAATVAPRMDASLEIGTFAHLTTGPIMTNDQHELFSKFLKLKPPVFKGAEYEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKLLWRSHVECQPTEAPPMAWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="39015" PGL_stop="40414"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39015" e_stop="39187"/>
            <exon e_start="39931" e_stop="40414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.908"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="39015" e_stop="39187" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39188" i_stop="39930" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="39931" e_stop="40414" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39015" stop="39187"/>
              <exon start="39931" stop="40414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAACTGTGGATTTTAGCCTTACAGGTAGCGGCTATGGCAAAATCCTTTCAAG : AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTCTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGTGACTACACTTCCAATCCGGTTCGTATTATCTCCTTTTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTAGTATGCCACCGGATAGAGATATTGATTTTTGCATCGATCTGGAACCGGGTACTCTCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTACGAGAGTTAAAGGCCCAACTACAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTCGGGGTGCTCCTGTTTTGTTT</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  Q  V  C  H  P  T  L  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  T  V  D  F  S  L  T  G  S  G  Y  G  K  I  L  S  R :   N  G  *  L  R  C  N  S  G  Y  D  L  A  L  S  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  M  G  G  *  L  H  F  Q  S  G  S  Y  Y  L  L  F  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  S  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  L  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  R  G  A  P  V  L  F </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  W  I  L  A  L  Q  V  A  A  M  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  F  V  L  R  K  W  L  V  R  V  V  *  R  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  E  I  L  I  F  A  S  I  W  N  R  V  L  S  P  F  L  Y  P  L  I  E  W  L  P  R  S  Y  E  S  *  R  P  N  Y  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  L  F  C   </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  F  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  N  C  G  F  *  P  Y  R  *  R  L  W  Q  N  P  F  K  :  K  W  L  T  S  M  *  F  W  V  *  L  G  S  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  Y  G  R  V  T  T  L  P  I  R  F  V  L  S  P  F  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  G  S  P  *  V  S  G  C  V  P  C  R  S  S  *  Y  A  T  G  *  R  Y  *  F  L  H  R  S  G  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  T  R  V  K  G  P  T  T  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  S  G  C  S  C  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39016" stop="39187"/>
                    <exon start="39931" stop="40127"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELWILALQVAAMAKSFQEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFFVLRKWLVRVV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40058" stop="40414"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHFQSGSYYLLFRAKKMVSKGCLAFLAHLRDDTTQVPSIESVSVVREFLDVFPADLPSMPPDRDIDFCIDLEPGTLPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPRGAPVLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39739" e_stop="40397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="39739" e_stop="40397" e_length="659"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39739" stop="40397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGACCCTGGCTCTACATTTTCATATGTATCTTCCGCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTTGTGTTTCTACTCCGGTGGGTGAGTCTTGATAGTTGAAAAAGTGTGTAGGTCTTGTCTTGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTCTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGTGACTACACTTCCAATCCGGTTCGTATTATCTCCTTTTTCGTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTAGTATGCCACCGGATAGAGATATTGATTTTTGCATCGATCTGGAACCGGGTACTCTCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTACGAGAGTTAAAGGCCCAACTACAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTCGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  A  F  A  N  G  L  N  L  H  C  E  L  L  D  M  P  I  C  V  S  T  P  V  G  E  S  *  *  L  K  K  C  V  G  L  V  L  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  G  S  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  Y  G  R  V  T  T  L  P  I  R  F  V  L  S  P  F  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  G  S  P  *  V  S  G  C  V  P  C  R  S  S  *  Y  A  T  G  *  R  Y  *  F  L  H  R  S  G  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  T  R  V  K  G  P  T  T  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  S   </first_frame>
            <second_frame>  L  T  L  A  L  H  F  H  M  Y  L  P  H  L  L  M  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  D  S  *  K  S  V  *  V  L  S  C  D  F  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  L  R  C  N  S  G  Y  D  L  A  L  S  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  M  G  G  *  L  H  F  Q  S  G  S  Y  Y  L  L  F  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  S  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  L  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  R  </second_frame>
            <third_frame>   *  P  W  L  Y  I  F  I  C  I  F  R  I  C  *  W  S  *  F  T  L  *  I  A  *  H  A  Y  L  C  F  Y  S  G  G  *  V  L  I  V  E  K  V  C  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  F  V  L  R  K  W  L  V  R  V  V  *  R  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  E  I  L  I  F  A  S  I  W  N  R  V  L  S  P  F  L  Y  P  L  I  E  W  L  P  R  S  Y  E  S  *  R  P  N  Y  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40058" stop="40396"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHFQSGSYYLLFRAKKMVSKGCLAFLAHLRDDTTQVPSIESVSVVREFLDVFPADLPSMPPDRDIDFCIDLEPGTLPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPR</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39849" stop="40127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLIVEKVCRSCLVTFVGSNTHVDLVILEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFFVLRKWLVRVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="40038" PGL_stop="39709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40038" e_stop="39709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="40038" e_stop="39709" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40038" stop="39709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAGAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTACACACTTTTTCAACTATCAAGACTCACCCACCGGAGTAGAAACACAAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  E  R  A  K  S  Y  P  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  S  Q  D  K  T  Y  T  L  F  Q  L  S  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  *  K  C  R  A  R  V  K  *  Y  R  S  H  T  I  T  N  Q </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  E  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  T  H  F  F  N  Y  Q  D  S  P  T  G  V  E  T  Q  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T   </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  H  T  F  S  T  I  K  T  H  P  P  E  *  K  H  K  *  A  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  M  K  M  *  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39926" stop="39711"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNQVYMSIAPHKSHKTRPTHFFNYQDSPTGVETQIGMSSNSQCKLRPLANAEDTYENVEPGSNNTEAIQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="49064" PGL_stop="51085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49064" e_stop="49101"/>
            <exon e_start="49207" e_stop="49252"/>
            <exon e_start="49312" e_stop="51085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.658"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.804"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.658">
            <gDNA_exon_boundary e_start="49064" e_stop="49101" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49102" i_stop="49206" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.804">
            <gDNA_exon_boundary e_start="49207" e_stop="49252" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49253" i_stop="49311" i_length="59"/>
          </intron>
          <exon e_serial="3" e_score="0.945">
            <gDNA_exon_boundary e_start="49312" e_stop="51085" e_length="1774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49064" stop="49101"/>
              <exon start="49207" stop="49252"/>
              <exon start="49312" stop="51085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318979" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTGAGATATCATAGTCAAAGATCACCTTGGAATTAT : TATACTATACAATGGATTTACAACACTCCCCCTTGGATATCAATAG : GAAAAAGAGTACACATATCTCATAATACGCTTTGAATGTTGCCTCGTTAAAAACCTTACCAGGAAAACCAACTTGGGACAAAAAATATAGTTAAGAAAAAGAGTACAACGCGTATTTCGCTCCCCCTGATGAAAACTTTACTTGATATCTCGGAGACGGCGCATTCCAATCTTGTATCTCAACTTCTCAAACGTTGATGTTAGCAATGCCTTAGTGAATAAATCAGCAAGATTATCACTTGAACGAGTTTGTTGAACTTCTATCTCACCATTTTGTCGAAGATCATGCGTGAAAAAGAACTTTGGTGAGATATGCTTTGTCCGATCTCCTTTGATGTATCCTCCTTTCAATTGAGCTATACAAGAAGCATTATCTTCGTACATTGTGGTTGGTATATTCTTTTTCAAAGAAAAACCACACATTTTCTAAATATGATGGGTCATTGTCTCAACCAGACACACTCTCGACTTGCTTCATGGATGACTATTATTTCTGCATGATTTGAAGAAGTGGCTACCAACATTTGCTTCATTGATCGCAAAGATATTATCGTGTCTCCACATGTAAACAAATAGCCTATTTGTGATCGAGCTTTATGCGGATCAGATAAATACCCTACATCTGCGTAACCAATCAATTCTGACTTGCATTCATTGGAATAGAATAAACTCATGTTCATGGTCCCCCGAAGATATTGAAGTATGTGTTTAGCACCATTACAATGTCTTTTTGTTGGGGAGGAACTGAATCTTGCCAGTAGACCTACTGCAAAACAGATCTCTGGTCGAGTACTTTTAGCAAGGTACATTAGTGCCCCAATCGCACTAAGGTAAGGAGTTTCATCCCCAAGAAGCTCTTCATCATTCTCTTGAGATCGAAATGGATTTGTATTTATGTCAAGCGATCTTACCACCATTGTATTACTCAATGGATGTGAGTTATCCATGTAAAAACACTTTAGTATCTTTTCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAAACTGTAGGCCAAGAAAAAATTTTGTCTTGCCGAGATCTTTCATTTCAAATTCTTTTTTCAGACACTCAAAAGATTCTAAAAGCTCTTTACGAGTGCCAATGATGTTCAAATCATCAACATACACAACTATTATTACAAATTCAGACCCCGACCGTTTAATAAAAATCCAGGGACAAATCGGGTTATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGACGATTGTACCACATCCTTCCTGATTGTTTCAATCCATACAGAGATTTCTGAAGCTTTATTAAACAAATTTCTCTTGAATCTTTGTATGCTTCAGGCACTTTGAATGCTTCAGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGGTGTGACAACGTCCATTAGACGCATTTTTAAGTTTTTCATGAACTGCCAGATTTATGAGATATCTGAAGGTGATTGCATCTACCACTGGAGAATATGTCTCCATATAATCAATGTCATGTCTTTGAGAAAAACCTTGAGCAACGAGTAGGGCTTTATATATCACGACTTCACCTTTCTCATTTCTTTTTCGTACAAAAATCCATTTGTACCCCACTGGCTTGATACCTTCAGGTGTTTGGATTATTCGTCCGAAAACTTTACGTTTTTCTAGTGAAGCCAATTCACCTTGAATTGCATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAAGAGATTTTGGCTCAAAATCTTCATCTTGTTGCATTATTT</gDNA_template>
            <first_frame> C  *  D  I  I  V  K  D  H  L  G  I  I :   I  L  Y  N  G  F  T  T  L  P  L  G  Y  Q  *  :  E  K  E  Y  T  Y  L  I  I  R  F  E  C  C  L  V  K  N  L  T  R  K  T  N  L  G  Q  K  I  *  L  R  K  R  V  Q  R  V  F  R  S  P  *  *  K  L  Y  L  I  S  R  R  R  R  I  P  I  L  Y  L  N  F  S  N  V  D  V  S  N  A  L  V  N  K  S  A  R  L  S  L  E  R  V  C  *  T  S  I  S  P  F  C  R  R  S  C  V  K  K  N  F  G  E  I  C  F  V  R  S  P  L  M  Y  P  P  F  N  *  A  I  Q  E  A  L  S  S  Y  I  V  V  G  I  F  F  F  K  E  K  P  H  I  F  *  I  *  W  V  I  V  S  T  R  H  T  L  D  L  L  H  G  *  L  L  F  L  H  D  L  K  K  W  L  P  T  F  A  S  L  I  A  K  I  L  S  C  L  H  M  *  T  N  S  L  F  V  I  E  L  Y  A  D  Q  I  N  T  L  H  L  R  N  Q  S  I  L  T  C  I  H  W  N  R  I  N  S  C  S  W  S  P  E  D  I  E  V  C  V  *  H  H  Y  N  V  F  L  L  G  R  N  *  I  L  P  V  D  L  L  Q  N  R  S  L  V  E  Y  F  *  Q  G  T  L  V  P  Q  S  H  *  G  K  E  F  H  P  Q  E  A  L  H  H  S  L  E  I  E  M  D  L  Y  L  C  Q  A  I  L  P  P  L  Y  Y  S  M  D  V  S  Y  P  C  K  N  T  L  V  S  F  L  C  T  L  I  D  E  Q  V  F  H  L  T  N  S  Q  T  V  G  Q  E  K  I  L  S  C  R  D  L  S  F  Q  I  L  F  S  D  T  Q  K  I  L  K  A  L  Y  E  C  Q  *  C  S  N  H  Q  H  T  Q  L  L  L  Q  I  Q  T  P  T  V  *  *  K  S  R  D  K  S  G  Y  F  C  T  L  S  L  T  N  I  H  S  D  D  C  T  T  S  F  L  I  V  S  I  H  T  E  I  S  E  A  L  L  N  K  F  L  L  N  L  C  M  L  Q  A  L  *  M  L  Q  E  F  S  *  K  C  C  G  P  M  S  H  I  D  R  V  *  Q  R  P  L  D  A  F  L  S  F  S  *  T  A  R  F  M  R  Y  L  K  V  I  A  S  T  T  G  E  Y  V  S  I  *  S  M  S  C  L  *  E  K  P  *  A  T  S  R  A  L  Y  I  T  T  S  P  F  S  F  L  F  R  T  K  I  H  L  Y  P  T  G  L  I  P  S  G  V  W  I  I  R  P  K  T  L  R  F  S  S  E  A  N  S  P  *  I  A  S  F  H  F  G  Q  S  F  L  C  L  H  S  *  R  D  F  G  S  K  S  S  S  C  C  I  I  </first_frame>
            <second_frame>  V  E  I  S  *  S  K  I  T  L  E  L   : L  Y  Y  T  M  D  L  Q  H  S  P  L  D  I  N  R :   K  K  S  T  H  I  S  *  Y  A  L  N  V  A  S  L  K  T  L  P  G  K  P  T  W  D  K  K  Y  S  *  E  K  E  Y  N  A  Y  F  A  P  P  D  E  N  F  T  *  Y  L  G  D  G  A  F  Q  S  C  I  S  T  S  Q  T  L  M  L  A  M  P  *  *  I  N  Q  Q  D  Y  H  L  N  E  F  V  E  L  L  S  H  H  F  V  E  D  H  A  *  K  R  T  L  V  R  Y  A  L  S  D  L  L  *  C  I  L  L  S  I  E  L  Y  K  K  H  Y  L  R  T  L  W  L  V  Y  S  F  S  K  K  N  H  T  F  S  K  Y  D  G  S  L  S  Q  P  D  T  L  S  T  C  F  M  D  D  Y  Y  F  C  M  I  *  R  S  G  Y  Q  H  L  L  H  *  S  Q  R  Y  Y  R  V  S  T  C  K  Q  I  A  Y  L  *  S  S  F  M  R  I  R  *  I  P  Y  I  C  V  T  N  Q  F  *  L  A  F  I  G  I  E  *  T  H  V  H  G  P  P  K  I  L  K  Y  V  F  S  T  I  T  M  S  F  C  W  G  G  T  E  S  C  Q  *  T  Y  C  K  T  D  L  W  S  S  T  F  S  K  V  H  *  C  P  N  R  T  K  V  R  S  F  I  P  K  K  L  F  I  I  L  L  R  S  K  W  I  C  I  Y  V  K  R  S  Y  H  H  C  I  T  Q  W  M  *  V  I  H  V  K  T  L  *  Y  L  F  C  V  R  *  L  M  N  K  Y  S  I  *  Q  I  L  K  L  *  A  K  K  K  F  C  L  A  E  I  F  H  F  K  F  F  F  Q  T  L  K  R  F  *  K  L  F  T  S  A  N  D  V  Q  I  I  N  I  H  N  Y  Y  Y  K  F  R  P  R  P  F  N  K  N  P  G  T  N  R  V  I  F  V  P  F  L  *  Q  I  F  T  Q  T  I  V  P  H  P  S  *  L  F  Q  S  I  Q  R  F  L  K  L  Y  *  T  N  F  S  *  I  F  V  C  F  R  H  F  E  C  F  R  N  F  H  E  N  V  V  V  Q  *  A  I  *  I  G  C  D  N  V  H  *  T  H  F  *  V  F  H  E  L  P  D  L  *  D  I  *  R  *  L  H  L  P  L  E  N  M  S  P  Y  N  Q  C  H  V  F  E  K  N  L  E  Q  R  V  G  L  Y  I  S  R  L  H  L  S  H  F  F  F  V  Q  K  S  I  C  T  P  L  A  *  Y  L  Q  V  F  G  L  F  V  R  K  L  Y  V  F  L  V  K  P  I  H  L  E  L  H  P  S  I  L  A  N  H  F  S  V  Y  I  R  E  E  I  L  A  Q  N  L  H  L  V  A  L  F </second_frame>
            <third_frame>   L  R  Y  H  S  Q  R  S  P  W  N  Y  :  Y  T  I  Q  W  I  Y  N  T  P  P  W  I  S  I   : G  K  R  V  H  I  S  H  N  T  L  *  M  L  P  R  *  K  P  Y  Q  E  N  Q  L  G  T  K  N  I  V  K  K  K  S  T  T  R  I  S  L  P  L  M  K  T  L  L  D  I  S  E  T  A  H  S  N  L  V  S  Q  L  L  K  R  *  C  *  Q  C  L  S  E  *  I  S  K  I  I  T  *  T  S  L  L  N  F  Y  L  T  I  L  S  K  I  M  R  E  K  E  L  W  *  D  M  L  C  P  I  S  F  D  V  S  S  F  Q  L  S  Y  T  R  S  I  I  F  V  H  C  G  W  Y  I  L  F  Q  R  K  T  T  H  F  L  N  M  M  G  H  C  L  N  Q  T  H  S  R  L  A  S  W  M  T  I  I  S  A  *  F  E  E  V  A  T  N  I  C  F  I  D  R  K  D  I  I  V  S  P  H  V  N  K  *  P  I  C  D  R  A  L  C  G  S  D  K  Y  P  T  S  A  *  P  I  N  S  D  L  H  S  L  E  *  N  K  L  M  F  M  V  P  R  R  Y  *  S  M  C  L  A  P  L  Q  C  L  F  V  G  E  E  L  N  L  A  S  R  P  T  A  K  Q  I  S  G  R  V  L  L  A  R  Y  I  S  A  P  I  A  L  R  *  G  V  S  S  P  R  S  S  S  S  F  S  *  D  R  N  G  F  V  F  M  S  S  D  L  T  T  I  V  L  L  N  G  C  E  L  S  M  *  K  H  F  S  I  F  S  V  Y  V  D  *  *  T  S  I  P  F  D  K  F  S  N  C  R  P  R  K  N  F  V  L  P  R  S  F  I  S  N  S  F  F  R  H  S  K  D  S  K  S  S  L  R  V  P  M  M  F  K  S  S  T  Y  T  T  I  I  T  N  S  D  P  D  R  L  I  K  I  Q  G  Q  I  G  L  F  L  Y  P  F  F  N  K  Y  S  L  R  R  L  Y  H  I  L  P  D  C  F  N  P  Y  R  D  F  *  S  F  I  K  Q  I  S  L  E  S  L  Y  A  S  G  T  L  N  A  S  G  I  F  M  K  M  L  W  S  N  E  P  Y  R  *  G  V  T  T  S  I  R  R  I  F  K  F  F  M  N  C  Q  I  Y  E  I  S  E  G  D  C  I  Y  H  W  R  I  C  L  H  I  I  N  V  M  S  L  R  K  T  L  S  N  E  *  G  F  I  Y  H  D  F  T  F  L  I  S  F  S  Y  K  N  P  F  V  P  H  W  L  D  T  F  R  C  L  D  Y  S  S  E  N  F  T  F  F  *  *  S  Q  F  T  L  N  C  I  L  P  F  W  P  I  I  S  L  S  T  F  V  K  R  F  W  L  K  I  F  I  L  L  H  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50301" stop="50600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSIPFDKFSNCRPRKNFVLPRSFISNSFFRHSKDSKSSLRVPMMFKSSTYTTIITNSDPDRLIKIQGQIGLFLYPFFNKYSLRRLYHILPDCFNPYRDF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50140" stop="50430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKEFHPQEALHHSLEIEMDLYLCQAILPPLYYSMDVSYPCKNTLVSFLCTLIDEQVFHLTNSQTVGQEKILSCRDLSFQILFSDTQKILKALYECQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="52833" PGL_stop="52462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52833" e_stop="52462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="52833" e_stop="52462" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52833" stop="52462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGTGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTATTAAGTCCCAAATAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGTTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTGAACTTTCTTCTAGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAGTAAACAAACGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</gDNA_template>
            <first_frame> L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  *  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  L  S  P  K  *  T  Y  *  V  S  K  L  F  A  K  M  V  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  Y  L  N  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  *  T  N  G  L  L  I  L  M  I  L  S  F  G  M </first_frame>
            <second_frame>  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  Y  *  V  P  N  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  D  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  R  E  E  N  C  A  *  K  I  T  *  T  F  F  *  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  S  K  Q  T  V  Y  *  F  *  *  F  Y  H  L  A   </second_frame>
            <third_frame>   M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  V  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  I  K  S  Q  I  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  T  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  E  L  S  S  R  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52831" stop="52463"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMAYVNTISGSTKLIEGSGRVTLLLPGGTILSIDNALYCIKSQINLLSFKVIRQNGYHVETTNEGKVEYLYITTINVEKKIVHEKLPELSSRLYYTSISTVESHAVVVNKRFTNFNDFIIWH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="54243" PGL_stop="53481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54243" e_stop="53481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="54243" e_stop="53481" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54243" stop="53481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTCTCTCATAATTTCATTATATCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAATGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTAAATATCTGACGGTAAAAGATCTACTTGAATTGTGGACTGATTTAAAGGGGAGATATGGCCACCTAAAGGCAACACTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGATTTCAAGATTTTAAGAACGTAATTGCATACAACTCTATTGTATTCAGGATAACCTCCCAGTTAAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGTAAAGACACTTGCTACTTTCCATGCCTCAAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGCTATAATAATGCACGGGGACGTGACAA</gDNA_template>
            <first_frame> K  T  L  S  A  R  S  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  S  L  I  I  S  L  Y  R  I  Y  P  N  L  S  L  W  H  *  I  F  L  E  R  I  I  F  H  G  Y  S  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  M  K  H  R  V  K  I  R  R  M  L  *  F  S  F  V  I  I  L  M  R  A  *  R  L  N  I  *  R  *  K  I  Y  L  N  C  G  L  I  *  R  G  D  M  A  T  *  R  Q  H  C  C  Q  E  L  V  M  S  G  C  I  Y  D  F  K  I  L  R  T  *  L  H  T  T  L  L  Y  S  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  R  T  C  W  *  R  H  L  L  L  S  M  P  Q  M  *  Y  C  S  S  N  I  V  K  R  V  F  R  N  I  L  N  *  S  H  V  F  W  W  L  S  N  I  M  L  F  *  *  K  I  M  K  L  V  P  L  E  L  L  H  Y  R  R  Q  M  W  W  K  H  V  I  N  L  K  *  K  E  M  I  I  G  A  I  I  M  H  G  D  V  T  </first_frame>
            <second_frame>  K  R  Y  Q  H  E  V  A  T  C  K  G  I  I  *  I  F  L  F  D  S  H  I  L  S  *  F  H  Y  I  E  F  I  Q  T  *  V  C  G  I  R  Y  F  W  K  E  L  S  F  M  G  T  R  C  *  D  S  L  G  C  *  R  S  *  C  H  Y  Y  S  G  K  *  S  I  E  S  R  *  G  E  C  Y  D  F  P  S  S  S  S  *  *  G  P  E  D  *  I  S  D  G  K  R  S  T  *  I  V  D  *  F  K  G  E  I  W  P  P  K  G  N  T  V  A  K  S  S  L  *  V  D  A  F  T  I  S  R  F  *  E  R  N  C  I  Q  L  Y  C  I  Q  D  N  L  P  V  K  I  M  W  G  D  Y  K  R  *  G  H  V  G  K  D  T  C  Y  F  P  C  L  K  C  D  I  A  A  A  I  S  *  K  G  F  S  E  I  F  *  T  N  L  M  S  F  G  G  *  A  T  *  C  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  C  G  G  S  T  *  S  I  *  S  K  K  R  *  S  S  G  L  *  *  C  T  G  T  *  Q </second_frame>
            <third_frame>   N  V  I  S  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  F  S  H  N  F  I  I  S  N  L  S  K  L  E  F  V  A  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  A  A  K  G  L  D  A  T  I  T  Q  G  N  E  A  S  S  Q  D  K  A  N  A  M  I  F  L  R  H  H  L  D  E  G  L  K  I  K  Y  L  T  V  K  D  L  L  E  L  W  T  D  L  K  G  R  Y  G  H  L  K  A  T  L  L  P  R  A  R  Y  E  W  M  H  L  R  F  Q  D  F  K  N  V  I  A  Y  N  S  I  V  F  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  E  D  M  L  V  K  T  L  A  T  F  H  A  S  N  V  I  L  Q  Q  Q  Y  R  E  K  G  F  Q  K  Y  S  E  L  I  S  C  L  L  V  A  E  Q  H  N  A  L  L  M  K  N  H  E  A  R  P  T  G  A  A  P  L  P  E  A  N  V  V  E  A  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  A  R  G  R  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54241" stop="53483"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVISTKLLLAKVLYKYFYLIHIFSHNFIISNLSKLEFVALDISGKNYLSWVLDAEIHLAAKGLDATITQGNEASSQDKANAMIFLRHHLDEGLKIKYLTVKDLLELWTDLKGRYGHLKATLLPRARYEWMHLRFQDFKNVIAYNSIVFRITSQLKLCGETIKDEDMLVKTLATFHASNVILQQQYREKGFQKYSELISCLLVAEQHNALLMKNHEARPTGAAPLPEANVVEARDQSEVKRDDHRGYNNARGRD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="56525" PGL_stop="66186"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56525" e_stop="56586"/>
            <exon e_start="57221" e_stop="57514"/>
            <exon e_start="57604" e_stop="57690"/>
            <exon e_start="57780" e_stop="57909"/>
            <exon e_start="58105" e_stop="58278"/>
            <exon e_start="58425" e_stop="58507"/>
            <exon e_start="58856" e_stop="58972"/>
            <exon e_start="59508" e_stop="59583"/>
            <exon e_start="60067" e_stop="60238"/>
            <exon e_start="60425" e_stop="60525"/>
            <exon e_start="60625" e_stop="60791"/>
            <exon e_start="61219" e_stop="61276"/>
            <exon e_start="62255" e_stop="62395"/>
            <exon e_start="63603" e_stop="63938"/>
            <exon e_start="64603" e_stop="64683"/>
            <exon e_start="64887" e_stop="64952"/>
            <exon e_start="65446" e_stop="65563"/>
            <exon e_start="66148" e_stop="66186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.000" e_score="0.984"/>
          <exon-intron don_prob="0.983" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.784" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.584" acc_prob="0.363" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="0.942"/>
          <exon-intron don_prob="0.991" acc_prob="0.966" e_score="0.980"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="56525" e_stop="56586" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56587" i_stop="57220" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57221" e_stop="57514" e_length="294"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.873">
            <gDNA_intron_boundary i_start="57515" i_stop="57603" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57604" e_stop="57690" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.945">
            <gDNA_intron_boundary i_start="57691" i_stop="57779" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57780" e_stop="57909" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.784" acc_prob="0.956">
            <gDNA_intron_boundary i_start="57910" i_stop="58104" i_length="195"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58105" e_stop="58278" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.584" acc_prob="0.363">
            <gDNA_intron_boundary i_start="58279" i_stop="58424" i_length="146"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58425" e_stop="58507" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.828">
            <gDNA_intron_boundary i_start="58508" i_stop="58855" i_length="348"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58856" e_stop="58972" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.974" acc_prob="0.979">
            <gDNA_intron_boundary i_start="58973" i_stop="59507" i_length="535"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="59508" e_stop="59583" e_length="76"/>
          </exon>
          <intron i_serial="8" don_prob="0.976" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59584" i_stop="60066" i_length="483"/>
          </intron>
          <exon e_serial="9" e_score="0.942">
            <gDNA_exon_boundary e_start="60067" e_stop="60238" e_length="172"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60239" i_stop="60424" i_length="186"/>
          </intron>
          <exon e_serial="10" e_score="0.980">
            <gDNA_exon_boundary e_start="60425" e_stop="60525" e_length="101"/>
          </exon>
          <intron i_serial="10" don_prob="0.991" acc_prob="0.966">
            <gDNA_intron_boundary i_start="60526" i_stop="60624" i_length="99"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="60625" e_stop="60791" e_length="167"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60792" i_stop="61218" i_length="427"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="61219" e_stop="61276" e_length="58"/>
          </exon>
          <intron i_serial="12" don_prob="0.910" acc_prob="0.988">
            <gDNA_intron_boundary i_start="61277" i_stop="62254" i_length="978"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62255" e_stop="62395" e_length="141"/>
          </exon>
          <intron i_serial="13" don_prob="0.944" acc_prob="0.993">
            <gDNA_intron_boundary i_start="62396" i_stop="63602" i_length="1207"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="63603" e_stop="63938" e_length="336"/>
          </exon>
          <intron i_serial="14" don_prob="0.991" acc_prob="0.952">
            <gDNA_intron_boundary i_start="63939" i_stop="64602" i_length="664"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="64603" e_stop="64683" e_length="81"/>
          </exon>
          <intron i_serial="15" don_prob="0.987" acc_prob="0.930">
            <gDNA_intron_boundary i_start="64684" i_stop="64886" i_length="203"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="64887" e_stop="64952" e_length="66"/>
          </exon>
          <intron i_serial="16" don_prob="0.992" acc_prob="0.869">
            <gDNA_intron_boundary i_start="64953" i_stop="65445" i_length="493"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="65446" e_stop="65563" e_length="118"/>
          </exon>
          <intron i_serial="17" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="65564" i_stop="66147" i_length="584"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="66148" e_stop="66186" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56525" stop="56586"/>
              <exon start="57221" stop="57514"/>
              <exon start="57604" stop="57690"/>
              <exon start="57780" stop="57909"/>
              <exon start="58105" stop="58278"/>
              <exon start="58425" stop="58507"/>
              <exon start="58856" stop="58972"/>
              <exon start="59508" stop="59583"/>
              <exon start="60067" stop="60238"/>
              <exon start="60425" stop="60525"/>
              <exon start="60625" stop="60791"/>
              <exon start="61219" stop="61276"/>
              <exon start="62255" stop="62395"/>
              <exon start="63603" stop="63938"/>
              <exon start="64603" stop="64683"/>
              <exon start="64887" stop="64952"/>
              <exon start="65446" stop="65563"/>
              <exon start="66148" stop="66186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTATAGAGTTCAAACAGAGGTCAAAAAAACAAAATTTAGTACAATTGCTTGACAAGTCAG : AATAATTTTGCCAAAATTTGATCAAGAACTACTTGGCCTTTGATAATGTTTGGAAATGGAGTGGTTGGTATACTCTCAGAGGCAACCAACAAGTGGGAAAGACGGGCTCCGCTGACTCCTTCACACTGTGCTAGACTGCTGCATGGTGGCAGGGGTAAGACCGGGGTGTCACGTATCATTGTGCAGCCATCTACGAAGCGCGTTCATCATGATGCTCTCTATGAAGATGTTGGATGTAAGATATCGGAGGACTTGTCGCAATGTGGTCTCATCTTGGGTATCAAACAACCCAAG : TTGGAGATGATTCTTCCTGATAGGGCCTATGCCTTCTTCTCCCATACTCACAAGGCACAAAAGGAAAATATGCCTTTGTTGGATAAG : ATCTTAGCTGAAAGGGCATCTCTGTTCGACTATGAGCTTATAGTTGAAGACACTGGAAAGAGGTTACTTGCATTTGGTAAATTTGCTGGTAGAGCTGGAATGATTGATTTTCTACGTGGATTGGGACTCT : GGTATCTCAATCATGGCTACTCAACACCTTTTCTCTCACTCGGCTCATCTTACATGTACTCTTCATTGGCTGCGGCTAAGGCTGCAGTGATTTCTGTTGGTGAAGAGATAGCAACTATGGGACTTCCATCGGGAATCTGTCCACTTGTATTTGTTTTCACTGGTTCTGGAAATG : TGTCTCGTGGTGCACAAGAAATTTTTAAGCTTCTTCCTCATACATTTGTGGATCCAAGAAAACTTCCAGAGCTACATGAGATG : GCCAGGGATCTTACTCAATCGAAGCAACCATCAAAGAGAATCTTTCAAGTGTATGGTTGTGTAGCAACCTGCCAAGACATGGTGGAACATTTAAAACCTTCAAAATCTTTCAATAAG : GCTGATTACTACACACATCCAGAGCAATACAAACCTGCTTTCCATGAGAAAATAGCTCCTTATGCATCTGTCATAG : TAAATTGTATGTACTGGGAGAGAAGGTTTCCTAGGTTGTTAACTACTAAACAGATTCAAGACCTTATGAAAAATGGATGCCCACTTGTTGGAATCTGTGACATAACTTGTGACGTGGGAGGGTCAATTGAGTTCATCAACCAAACCACATCAATAGACTCACCTTTCTTCAG : CTAGGTATGAACCTTTCAACGATTCGTATCATTATGACCTAGAAGGTAAAGGTGTGATGTGTTCAGCTGTAGATATTCTTCCCACTGAGTTTGCGAAAGAG : GCATCCCAACATTTCGGAGATATTCTGTCCCACTTTATTGTAAGCTTAGCTTCCTTTAGAAATCTTGAAGAGTTACCTGCACACTTGAAGAGAGCTTGCATAGCCCATTATGGAGGTCTTACTCAGTTGTATGAATACATACCTCGAATGCGGAAATCTGATCTAGA : TGACCCTTCAATAGTTCTTTCAAATTCCAATGGGAACGGGAGGAAGTACACCGTATTG : GTATCTCTAAGTGGTCATTTGTTTGATAAATTTCTCATAAACGAGGCGTTGGATATTATTGAAGCAGCAGGTGGCTCCTTCCACTTGGTGAAGTGCCAAGTTGGTCAAATCACAACTGATTCGTCATACTCAGAATTGGAG : GTTGGAGCTGAAGATAAATCTGTTTTAGATAAAATAGTCGATTCTTTAACTTCCCTTGCTAATTCAAGCAACTCTTTGGGATCTCAAGACAAGGAAAACAACATATCTTTGAAGGTTGGGGAATTCCAAGAAACAATCATGGATGAGAAGTATGATTCAAAGAAGGTCTTAATTTTAGGTGCTGGTCGGGTTTGCAGACCAGCTGCAGAACTTTTAGCGTCAATTGGTAGCACGACATCTAGGCAATTTCCTAAATCATCTGTAACGGCTGATTTTGAAGAGCAAAATTGTGTCCAAGTGATTGTTGGTTCTTTGTACTTGAAGGATGCGGAGGAG : GTTACTAAAGTTATTCCAAATGCAAAAGCAATTCAGCTTGACATTACGAGTCACGAGTCTCTTTCTAGCTGGATCGCAGAG : GTTGATGTTGTCATCAGCTTACTGCCTCCTAGCTGCCATGGTGTTATAGCAAAGGCATGCATTGAG : CTGAAGAAACATCTCGTCACGGCTAGCTACGTTGATGATTCTATGTTAAAGCTAGACCAAGATGCAAAATCTGCTGGAATTACTATTCTTGGTGAAATGGGCTTGGACCCAGGAATAG : ATCATATGATGGCGATGAAAATGATCAACGAAGCCCATG</gDNA_template>
            <first_frame> H  Y  R  V  Q  T  E  V  K  K  T  K  F  S  T  I  A  *  Q  V  R :   I  I  L  P  K  F  D  Q  E  L  L  G  L  *  *  C  L  E  M  E  W  L  V  Y  S  Q  R  Q  P  T  S  G  K  D  G  L  R  *  L  L  H  T  V  L  D  C  C  M  V  A  G  V  R  P  G  C  H  V  S  L  C  S  H  L  R  S  A  F  I  M  M  L  S  M  K  M  L  D  V  R  Y  R  R  T  C  R  N  V  V  S  S  W  V  S  N  N  P  S :   W  R  *  F  F  L  I  G  P  M  P  S  S  P  I  L  T  R  H  K  R  K  I  C  L  C  W  I  R :   S  *  L  K  G  H  L  C  S  T  M  S  L  *  L  K  T  L  E  R  G  Y  L  H  L  V  N  L  L  V  E  L  E  *  L  I  F  Y  V  D  W  D  S  :  G  I  S  I  M  A  T  Q  H  L  F  S  H  S  A  H  L  T  C  T  L  H  W  L  R  L  R  L  Q  *  F  L  L  V  K  R  *  Q  L  W  D  F  H  R  E  S  V  H  L  Y  L  F  S  L  V  L  E  M  :  C  L  V  V  H  K  K  F  L  S  F  F  L  I  H  L  W  I  Q  E  N  F  Q  S  Y  M  R  W :   P  G  I  L  L  N  R  S  N  H  Q  R  E  S  F  K  C  M  V  V  *  Q  P  A  K  T  W  W  N  I  *  N  L  Q  N  L  S  I  R :   L  I  T  T  H  I  Q  S  N  T  N  L  L  S  M  R  K  *  L  L  M  H  L  S  *  :  *  I  V  C  T  G  R  E  G  F  L  G  C  *  L  L  N  R  F  K  T  L  *  K  M  D  A  H  L  L  E  S  V  T  *  L  V  T  W  E  G  Q  L  S  S  S  T  K  P  H  Q  *  T  H  L  S  S   : A  R  Y  E  P  F  N  D  S  Y  H  Y  D  L  E  G  K  G  V  M  C  S  A  V  D  I  L  P  T  E  F  A  K  E  :  A  S  Q  H  F  G  D  I  L  S  H  F  I  V  S  L  A  S  F  R  N  L  E  E  L  P  A  H  L  K  R  A  C  I  A  H  Y  G  G  L  T  Q  L  Y  E  Y  I  P  R  M  R  K  S  D  L  D :   D  P  S  I  V  L  S  N  S  N  G  N  G  R  K  Y  T  V  L  :  V  S  L  S  G  H  L  F  D  K  F  L  I  N  E  A  L  D  I  I  E  A  A  G  G  S  F  H  L  V  K  C  Q  V  G  Q  I  T  T  D  S  S  Y  S  E  L  E  :  V  G  A  E  D  K  S  V  L  D  K  I  V  D  S  L  T  S  L  A  N  S  S  N  S  L  G  S  Q  D  K  E  N  N  I  S  L  K  V  G  E  F  Q  E  T  I  M  D  E  K  Y  D  S  K  K  V  L  I  L  G  A  G  R  V  C  R  P  A  A  E  L  L  A  S  I  G  S  T  T  S  R  Q  F  P  K  S  S  V  T  A  D  F  E  E  Q  N  C  V  Q  V  I  V  G  S  L  Y  L  K  D  A  E  E  :  V  T  K  V  I  P  N  A  K  A  I  Q  L  D  I  T  S  H  E  S  L  S  S  W  I  A  E  :  V  D  V  V  I  S  L  L  P  P  S  C  H  G  V  I  A  K  A  C  I  E  :  L  K  K  H  L  V  T  A  S  Y  V  D  D  S  M  L  K  L  D  Q  D  A  K  S  A  G  I  T  I  L  G  E  M  G  L  D  P  G  I   : D  H  M  M  A  M  K  M  I  N  E  A  H  </first_frame>
            <second_frame>  I  I  E  F  K  Q  R  S  K  K  Q  N  L  V  Q  L  L  D  K  S   : E  *  F  C  Q  N  L  I  K  N  Y  L  A  F  D  N  V  W  K  W  S  G  W  Y  T  L  R  G  N  Q  Q  V  G  K  T  G  S  A  D  S  F  T  L  C  *  T  A  A  W  W  Q  G  *  D  R  G  V  T  Y  H  C  A  A  I  Y  E  A  R  S  S  *  C  S  L  *  R  C  W  M  *  D  I  G  G  L  V  A  M  W  S  H  L  G  Y  Q  T  T  Q   : V  G  D  D  S  S  *  *  G  L  C  L  L  L  P  Y  S  Q  G  T  K  G  K  Y  A  F  V  G  *   : D  L  S  *  K  G  I  S  V  R  L  *  A  Y  S  *  R  H  W  K  E  V  T  C  I  W  *  I  C  W  *  S  W  N  D  *  F  S  T  W  I  G  T  L :   V  S  Q  S  W  L  L  N  T  F  S  L  T  R  L  I  L  H  V  L  F  I  G  C  G  *  G  C  S  D  F  C  W  *  R  D  S  N  Y  G  T  S  I  G  N  L  S  T  C  I  C  F  H  W  F  W  K  C :   V  S  W  C  T  R  N  F  *  A  S  S  S  Y  I  C  G  S  K  K  T  S  R  A  T  *  D   : G  Q  G  S  Y  S  I  E  A  T  I  K  E  N  L  S  S  V  W  L  C  S  N  L  P  R  H  G  G  T  F  K  T  F  K  I  F  Q  *   : G  *  L  L  H  T  S  R  A  I  Q  T  C  F  P  *  E  N  S  S  L  C  I  C  H  S :   K  L  Y  V  L  G  E  K  V  S  *  V  V  N  Y  *  T  D  S  R  P  Y  E  K  W  M  P  T  C  W  N  L  *  H  N  L  *  R  G  R  V  N  *  V  H  Q  P  N  H  I  N  R  L  T  F  L  Q  :  L  G  M  N  L  S  T  I  R  I  I  M  T  *  K  V  K  V  *  C  V  Q  L  *  I  F  F  P  L  S  L  R  K  R :   H  P  N  I  S  E  I  F  C  P  T  L  L  *  A  *  L  P  L  E  I  L  K  S  Y  L  H  T  *  R  E  L  A  *  P  I  M  E  V  L  L  S  C  M  N  T  Y  L  E  C  G  N  L  I  *   : M  T  L  Q  *  F  F  Q  I  P  M  G  T  G  G  S  T  P  Y  W :   Y  L  *  V  V  I  C  L  I  N  F  S  *  T  R  R  W  I  L  L  K  Q  Q  V  A  P  S  T  W  *  S  A  K  L  V  K  S  Q  L  I  R  H  T  Q  N  W  R :   L  E  L  K  I  N  L  F  *  I  K  *  S  I  L  *  L  P  L  L  I  Q  A  T  L  W  D  L  K  T  R  K  T  T  Y  L  *  R  L  G  N  S  K  K  Q  S  W  M  R  S  M  I  Q  R  R  S  *  F  *  V  L  V  G  F  A  D  Q  L  Q  N  F  *  R  Q  L  V  A  R  H  L  G  N  F  L  N  H  L  *  R  L  I  L  K  S  K  I  V  S  K  *  L  L  V  L  C  T  *  R  M  R  R  R :   L  L  K  L  F  Q  M  Q  K  Q  F  S  L  T  L  R  V  T  S  L  F  L  A  G  S  Q  R :   L  M  L  S  S  A  Y  C  L  L  A  A  M  V  L  *  Q  R  H  A  L  S :   *  R  N  I  S  S  R  L  A  T  L  M  I  L  C  *  S  *  T  K  M  Q  N  L  L  E  L  L  F  L  V  K  W  A  W  T  Q  E  *  :  I  I  *  W  R  *  K  *  S  T  K  P  M </second_frame>
            <third_frame>   L  *  S  S  N  R  G  Q  K  N  K  I  *  Y  N  C  L  T  S  Q  :  N  N  F  A  K  I  *  S  R  T  T  W  P  L  I  M  F  G  N  G  V  V  G  I  L  S  E  A  T  N  K  W  E  R  R  A  P  L  T  P  S  H  C  A  R  L  L  H  G  G  R  G  K  T  G  V  S  R  I  I  V  Q  P  S  T  K  R  V  H  H  D  A  L  Y  E  D  V  G  C  K  I  S  E  D  L  S  Q  C  G  L  I  L  G  I  K  Q  P  K  :  L  E  M  I  L  P  D  R  A  Y  A  F  F  S  H  T  H  K  A  Q  K  E  N  M  P  L  L  D  K  :  I  L  A  E  R  A  S  L  F  D  Y  E  L  I  V  E  D  T  G  K  R  L  L  A  F  G  K  F  A  G  R  A  G  M  I  D  F  L  R  G  L  G  L   : W  Y  L  N  H  G  Y  S  T  P  F  L  S  L  G  S  S  Y  M  Y  S  S  L  A  A  A  K  A  A  V  I  S  V  G  E  E  I  A  T  M  G  L  P  S  G  I  C  P  L  V  F  V  F  T  G  S  G  N   : V  S  R  G  A  Q  E  I  F  K  L  L  P  H  T  F  V  D  P  R  K  L  P  E  L  H  E  M  :  A  R  D  L  T  Q  S  K  Q  P  S  K  R  I  F  Q  V  Y  G  C  V  A  T  C  Q  D  M  V  E  H  L  K  P  S  K  S  F  N  K  :  A  D  Y  Y  T  H  P  E  Q  Y  K  P  A  F  H  E  K  I  A  P  Y  A  S  V  I   : V  N  C  M  Y  W  E  R  R  F  P  R  L  L  T  T  K  Q  I  Q  D  L  M  K  N  G  C  P  L  V  G  I  C  D  I  T  C  D  V  G  G  S  I  E  F  I  N  Q  T  T  S  I  D  S  P  F  F  S :   *  V  *  T  F  Q  R  F  V  S  L  *  P  R  R  *  R  C  D  V  F  S  C  R  Y  S  S  H  *  V  C  E  R   : G  I  P  T  F  R  R  Y  S  V  P  L  Y  C  K  L  S  F  L  *  K  S  *  R  V  T  C  T  L  E  E  S  L  H  S  P  L  W  R  S  Y  S  V  V  *  I  H  T  S  N  A  E  I  *  S  R  :  *  P  F  N  S  S  F  K  F  Q  W  E  R  E  E  V  H  R  I   : G  I  S  K  W  S  F  V  *  *  I  S  H  K  R  G  V  G  Y  Y  *  S  S  R  W  L  L  P  L  G  E  V  P  S  W  S  N  H  N  *  F  V  I  L  R  I  G   : G  W  S  *  R  *  I  C  F  R  *  N  S  R  F  F  N  F  P  C  *  F  K  Q  L  F  G  I  S  R  Q  G  K  Q  H  I  F  E  G  W  G  I  P  R  N  N  H  G  *  E  V  *  F  K  E  G  L  N  F  R  C  W  S  G  L  Q  T  S  C  R  T  F  S  V  N  W  *  H  D  I  *  A  I  S  *  I  I  C  N  G  *  F  *  R  A  K  L  C  P  S  D  C  W  F  F  V  L  E  G  C  G  G   : G  Y  *  S  Y  S  K  C  K  S  N  S  A  *  H  Y  E  S  R  V  S  F  *  L  D  R  R   : G  *  C  C  H  Q  L  T  A  S  *  L  P  W  C  Y  S  K  G  M  H  *   : A  E  E  T  S  R  H  G  *  L  R  *  *  F  Y  V  K  A  R  P  R  C  K  I  C  W  N  Y  Y  S  W  *  N  G  L  G  P  R  N  R :   S  Y  D  G  D  E  N  D  Q  R  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60223" stop="60238"/>
                    <exon start="60425" stop="60525"/>
                    <exon start="60625" stop="60791"/>
                    <exon start="61219" stop="61276"/>
                    <exon start="62255" stop="62395"/>
                    <exon start="63603" stop="63938"/>
                    <exon start="64603" stop="64683"/>
                    <exon start="64887" stop="64952"/>
                    <exon start="65446" stop="65563"/>
                    <exon start="66148" stop="66185"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1122</number_coding_nucleotides>
                  <number_encoded_amino_acids>374</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THLSSARYEPFNDSYHYDLEGKGVMCSAVDILPTEFAKEASQHFGDILSHFIVSLASFRNLEELPAHLKRACIAHYGGLTQLYEYIPRMRKSDLDDPSIVLSNSNGNGRKYTVLVSLSGHLFDKFLINEALDIIEAAGGSFHLVKCQVGQITTDSSYSELEVGAEDKSVLDKIVDSLTSLANSSNSLGSQDKENNISLKVGEFQETIMDEKYDSKKVLILGAGRVCRPAAELLASIGSTTSRQFPKSSVTADFEEQNCVQVIVGSLYLKDAEEVTKVIPNAKAIQLDITSHESLSSWIAEVDVVISLLPPSCHGVIAKACIELKKHLVTASYVDDSMLKLDQDAKSAGITILGEMGLDPGIDHMMAMKMINEAH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57242" stop="57514"/>
                    <exon start="57604" stop="57690"/>
                    <exon start="57780" stop="57909"/>
                    <exon start="58105" stop="58278"/>
                    <exon start="58425" stop="58507"/>
                    <exon start="58856" stop="58972"/>
                    <exon start="59508" stop="59583"/>
                    <exon start="60067" stop="60238"/>
                    <exon start="60425" stop="60428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRTTWPLIMFGNGVVGILSEATNKWERRAPLTPSHCARLLHGGRGKTGVSRIIVQPSTKRVHHDALYEDVGCKISEDLSQCGLILGIKQPKLEMILPDRAYAFFSHTHKAQKENMPLLDKILAERASLFDYELIVEDTGKRLLAFGKFAGRAGMIDFLRGLGLWYLNHGYSTPFLSLGSSYMYSSLAAAKAAVISVGEEIATMGLPSGICPLVFVFTGSGNVSRGAQEIFKLLPHTFVDPRKLPELHEMARDLTQSKQPSKRIFQVYGCVATCQDMVEHLKPSKSFNKADYYTHPEQYKPAFHEKIAPYASVIVNCMYWERRFPRLLTTKQIQDLMKNGCPLVGICDITCDVGGSIEFINQTTSIDSPFFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="66860" PGL_stop="68004"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66860" e_stop="67018"/>
            <exon e_start="67532" e_stop="68004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66860" e_stop="67018" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="67019" i_stop="67531" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67532" e_stop="68004" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66860" stop="67018"/>
              <exon start="67532" stop="68004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAGAACCTTTATGATTCAGCTGCAAAGCTTCGTCTTCCTGATTTTCCAGCCTTTGCATTAGAGTGTATACCAAATCGCAACTCCTTAGTGTATGGAGACTTGTATGGTATATCAGAAGAAGCATCTACCATCTTCCGAGGAACACTACGCTATGAAG : GTTTTAGTCAAATAATGGGGACACTTGTGAAGATAGGATTCTTCAGTACAGAATCTACTCTGATTCTTAAGGATGGGATCAGACCCACGCACAGCACGTTTTTGCTTGGACTTCTTGGGATCGATGGAAAGATGTTGCCTGAATCAGTAATTGATGAAAAATACATCACAAATAGGATATTAGCTCTTGGGCGTTGCACAGACAAGGACACTGCAGTCAATACAGCAAAAACAATAATGTAAGTTGAAAACGACTATTTAAGGTCAATCAGTTCTACTTGAAGCATTGAACAAGTATGTTCTTTAAAGCGAATATGTTGGTATAAAATGTTAAGTATTGTTTGTTATTCGTAAGAAACATGTTTTGGTTGAATGATAAAGAGTTTACTTAATATCCAAATAGCTTTTTGGGATTCCAAGAGCCCACGGAAATACCATCATCCTGCAAATCTCCATTTGAAGTAACATGTTTGC</gDNA_template>
            <first_frame> V  R  T  F  M  I  Q  L  Q  S  F  V  F  L  I  F  Q  P  L  H  *  S  V  Y  Q  I  A  T  P  *  C  M  E  T  C  M  V  Y  Q  K  K  H  L  P  S  S  E  E  H  Y  A  M  K  :  V  L  V  K  *  W  G  H  L  *  R  *  D  S  S  V  Q  N  L  L  *  F  L  R  M  G  S  D  P  R  T  A  R  F  C  L  D  F  L  G  S  M  E  R  C  C  L  N  Q  *  L  M  K  N  T  S  Q  I  G  Y  *  L  L  G  V  A  Q  T  R  T  L  Q  S  I  Q  Q  K  Q  *  C  K  L  K  T  T  I  *  G  Q  S  V  L  L  E  A  L  N  K  Y  V  L  *  S  E  Y  V  G  I  K  C  *  V  L  F  V  I  R  K  K  H  V  L  V  E  *  *  R  V  Y  L  I  S  K  *  L  F  G  I  P  R  A  H  G  N  T  I  I  L  Q  I  S  I  *  S  N  M  F   </first_frame>
            <second_frame>  S  E  P  L  *  F  S  C  K  A  S  S  S  *  F  S  S  L  C  I  R  V  Y  T  K  S  Q  L  L  S  V  W  R  L  V  W  Y  I  R  R  S  I  Y  H  L  P  R  N  T  T  L  *  R :   F  *  S  N  N  G  D  T  C  E  D  R  I  L  Q  Y  R  I  Y  S  D  S  *  G  W  D  Q  T  H  A  Q  H  V  F  A  W  T  S  W  D  R  W  K  D  V  A  *  I  S  N  *  *  K  I  H  H  K  *  D  I  S  S  W  A  L  H  R  Q  G  H  C  S  Q  Y  S  K  N  N  N  V  S  *  K  R  L  F  K  V  N  Q  F  Y  L  K  H  *  T  S  M  F  F  K  A  N  M  L  V  *  N  V  K  Y  C  L  L  F  V  R  N  M  F  W  L  N  D  K  E  F  T  *  Y  P  N  S  F  L  G  F  Q  E  P  T  E  I  P  S  S  C  K  S  P  F  E  V  T  C  L  </second_frame>
            <third_frame>   Q  N  L  Y  D  S  A  A  K  L  R  L  P  D  F  P  A  F  A  L  E  C  I  P  N  R  N  S  L  V  Y  G  D  L  Y  G  I  S  E  E  A  S  T  I  F  R  G  T  L  R  Y  E   : G  F  S  Q  I  M  G  T  L  V  K  I  G  F  F  S  T  E  S  T  L  I  L  K  D  G  I  R  P  T  H  S  T  F  L  L  G  L  L  G  I  D  G  K  M  L  P  E  S  V  I  D  E  K  Y  I  T  N  R  I  L  A  L  G  R  C  T  D  K  D  T  A  V  N  T  A  K  T  I  M  *  V  E  N  D  Y  L  R  S  I  S  S  T  *  S  I  E  Q  V  C  S  L  K  R  I  C  W  Y  K  M  L  S  I  V  C  Y  S  *  E  T  C  F  G  *  M  I  K  S  L  L  N  I  Q  I  A  F  W  D  S  K  S  P  R  K  Y  H  H  P  A  N  L  H  L  K  *  H  V  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66862" stop="67018"/>
                    <exon start="67532" stop="67773"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNLYDSAAKLRLPDFPAFALECIPNRNSLVYGDLYGISEEASTIFRGTLRYEGFSQIMGTLVKIGFFSTESTLILKDGIRPTHSTFLLGLLGIDGKMLPESVIDEKYITNRILALGRCTDKDTAVNTAKTIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="107744" PGL_stop="110708"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107744" e_stop="107880"/>
            <exon e_start="109116" e_stop="109234"/>
            <exon e_start="109311" e_stop="109450"/>
            <exon e_start="109751" e_stop="109870"/>
            <exon e_start="110658" e_stop="110708"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107744" e_stop="107880" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.988">
            <gDNA_intron_boundary i_start="107881" i_stop="109115" i_length="1235"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109116" e_stop="109234" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.903" acc_prob="0.828">
            <gDNA_intron_boundary i_start="109235" i_stop="109310" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109311" e_stop="109450" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="109451" i_stop="109750" i_length="300"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109751" e_stop="109870" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="109871" i_stop="110657" i_length="787"/>
          </intron>
          <exon e_serial="5" e_score="0.961">
            <gDNA_exon_boundary e_start="110658" e_stop="110708" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107744" stop="107880"/>
              <exon start="109116" stop="109234"/>
              <exon start="109311" stop="109450"/>
              <exon start="109751" stop="109870"/>
              <exon start="110658" stop="110708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGTTGAGGCCGTCTTACTGGTTTTCTGCACATCTGCACTGCAAATTTGCTGCTTTAGTTCAGCATGAGAAGGATGGTCATTCCACTAAGTTTCTTGCTCTTGATAAGTGCCTCCCTGGTAGAAACTTTTTGCAG : GTTATCGAAATTGAGTCCGGACCAGGACCACATGAACTTCAACTTGATGAAGAATGGTTGGCTATCACAAGAAAGTATAATGCTGTCTTCCCCTTGACAATCAAGAATGCGAACTATAA : TAGTGTGCATCTCGGCACAGAACAGTGCCTCCAGTTTGTAAGAAATAAGCTGCAGACAAGAGGATCCAAGCCGTTTGAATTTGTTCAGACTGCGCCATGCTACAAACCTTCTCAACCTGTAGCTGACGGTGTCTTCCATG : GTTTCTATAAAAACCCTCAGACAGAAGCTCTTCTACAGTTTCTGGAACTTGAGTATCTTCTCAATAAAATGCCAGAATCAAGGAAGCCTGCTGCAAATCTAGCCCCATTAATTTCAGGAT : GTTCCTTCGATTACCTCGGTGAAGATATACCCATAGATGATATAGATGATA</gDNA_template>
            <first_frame> E  S  *  G  R  L  T  G  F  L  H  I  C  T  A  N  L  L  L  *  F  S  M  R  R  M  V  I  P  L  S  F  L  L  L  I  S  A  S  L  V  E  T  F  C  R :   L  S  K  L  S  P  D  Q  D  H  M  N  F  N  L  M  K  N  G  W  L  S  Q  E  S  I  M  L  S  S  P  *  Q  S  R  M  R  T  I   : I  V  C  I  S  A  Q  N  S  A  S  S  L  *  E  I  S  C  R  Q  E  D  P  S  R  L  N  L  F  R  L  R  H  A  T  N  L  L  N  L  *  L  T  V  S  S  M  :  V  S  I  K  T  L  R  Q  K  L  F  Y  S  F  W  N  L  S  I  F  S  I  K  C  Q  N  Q  G  S  L  L  Q  I  *  P  H  *  F  Q  D  :  V  P  S  I  T  S  V  K  I  Y  P  *  M  I  *  M  I </first_frame>
            <second_frame>  K  V  E  A  V  L  L  V  F  C  T  S  A  L  Q  I  C  C  F  S  S  A  *  E  G  W  S  F  H  *  V  S  C  S  *  *  V  P  P  W  *  K  L  F  A   : G  Y  R  N  *  V  R  T  R  T  T  *  T  S  T  *  *  R  M  V  G  Y  H  K  K  V  *  C  C  L  P  L  D  N  Q  E  C  E  L  *  :  *  C  A  S  R  H  R  T  V  P  P  V  C  K  K  *  A  A  D  K  R  I  Q  A  V  *  I  C  S  D  C  A  M  L  Q  T  F  S  T  C  S  *  R  C  L  P  W :   F  L  *  K  P  S  D  R  S  S  S  T  V  S  G  T  *  V  S  S  Q  *  N  A  R  I  K  E  A  C  C  K  S  S  P  I  N  F  R  M :   F  L  R  L  P  R  *  R  Y  T  H  R  *  Y  R  *   </second_frame>
            <third_frame>   K  L  R  P  S  Y  W  F  S  A  H  L  H  C  K  F  A  A  L  V  Q  H  E  K  D  G  H  S  T  K  F  L  A  L  D  K  C  L  P  G  R  N  F  L  Q  :  V  I  E  I  E  S  G  P  G  P  H  E  L  Q  L  D  E  E  W  L  A  I  T  R  K  Y  N  A  V  F  P  L  T  I  K  N  A  N  Y  N :   S  V  H  L  G  T  E  Q  C  L  Q  F  V  R  N  K  L  Q  T  R  G  S  K  P  F  E  F  V  Q  T  A  P  C  Y  K  P  S  Q  P  V  A  D  G  V  F  H   : G  F  Y  K  N  P  Q  T  E  A  L  L  Q  F  L  E  L  E  Y  L  L  N  K  M  P  E  S  R  K  P  A  A  N  L  A  P  L  I  S  G   : C  S  F  D  Y  L  G  E  D  I  P  I  D  D  I  D  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0070D18.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107746" stop="107880"/>
                    <exon start="109116" stop="109234"/>
                    <exon start="109311" stop="109450"/>
                    <exon start="109751" stop="109870"/>
                    <exon start="110658" stop="110707"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRPSYWFSAHLHCKFAALVQHEKDGHSTKFLALDKCLPGRNFLQVIEIESGPGPHELQLDEEWLAITRKYNAVFPLTIKNANYNSVHLGTEQCLQFVRNKLQTRGSKPFEFVQTAPCYKPSQPVADGVFHGFYKNPQTEALLQFLELEYLLNKMPESRKPAANLAPLISGCSFDYLGEDIPIDDIDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="129766" PGL_stop="129169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129766" e_stop="129169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="129766" e_stop="129169" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129766" stop="129169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCGGAAAATAAACAAAATAGAAAAGTCGAAAGTCAGGTATGTTTTAGTTAATTAATCCTAACATTTTTTGTATTTGATTGTGATTTGATGCGATTTTGTTTGTATAATAATTATTCATACGTATTTGTGTTTTGAATTATTATGTAATTTAATCAATGCGATTATCTCTATTTTTTCTGGGTTTGTTGACATTGTATTTTTTAAATCCAGATTTACTGATATATTGATAAAATAAAGAGTATTCTGATTTGAATTTGTTTTTGTAACTTTTGTATAAAAAATTATATATCCAACAGAATACGTATGTGATGCATCAAAAGTTTAGACAAGGAATAATGTTTGAATCGTATATTTGAATTACTATTGTAACTTTATTGTTTTGTATTATTGATACAAATTAATGGTAATGTCATTATTTTCGTATCTAATATTGACTATGTGATTTTTATTTTTTTTACTAAAAAGCATATATGGGGAGCATTAGTTTTATAATAAAGCATTCTGGACATTGGACTGAAGATAATTGCTATGTTGATTACTCAACTGAGGCAATTATGATTAAAGAATATGCATCGTATAAAGATTTAGTTGATGA</gDNA_template>
            <first_frame> F  S  E  N  K  Q  N  R  K  V  E  S  Q  V  C  F  S  *  L  I  L  T  F  F  V  F  D  C  D  L  M  R  F  C  L  Y  N  N  Y  S  Y  V  F  V  F  *  I  I  M  *  F  N  Q  C  D  Y  L  Y  F  F  W  V  C  *  H  C  I  F  *  I  Q  I  Y  *  Y  I  D  K  I  K  S  I  L  I  *  I  C  F  C  N  F  C  I  K  N  Y  I  S  N  R  I  R  M  *  C  I  K  S  L  D  K  E  *  C  L  N  R  I  F  E  L  L  L  *  L  Y  C  F  V  L  L  I  Q  I  N  G  N  V  I  I  F  V  S  N  I  D  Y  V  I  F  I  F  F  T  K  K  H  I  W  G  A  L  V  L  *  *  S  I  L  D  I  G  L  K  I  I  A  M  L  I  T  Q  L  R  Q  L  *  L  K  N  M  H  R  I  K  I  *  L  M  </first_frame>
            <second_frame>  F  R  K  I  N  K  I  E  K  S  K  V  R  Y  V  L  V  N  *  S  *  H  F  L  Y  L  I  V  I  *  C  D  F  V  C  I  I  I  I  H  T  Y  L  C  F  E  L  L  C  N  L  I  N  A  I  I  S  I  F  S  G  F  V  D  I  V  F  F  K  S  R  F  T  D  I  L  I  K  *  R  V  F  *  F  E  F  V  F  V  T  F  V  *  K  I  I  Y  P  T  E  Y  V  C  D  A  S  K  V  *  T  R  N  N  V  *  I  V  Y  L  N  Y  Y  C  N  F  I  V  L  Y  Y  *  Y  K  L  M  V  M  S  L  F  S  Y  L  I  L  T  M  *  F  L  F  F  L  L  K  S  I  Y  G  E  H  *  F  Y  N  K  A  F  W  T  L  D  *  R  *  L  L  C  *  L  L  N  *  G  N  Y  D  *  R  I  C  I  V  *  R  F  S  *  * </second_frame>
            <third_frame>   F  G  K  *  T  K  *  K  S  R  K  S  G  M  F  *  L  I  N  P  N  I  F  C  I  *  L  *  F  D  A  I  L  F  V  *  *  L  F  I  R  I  C  V  L  N  Y  Y  V  I  *  S  M  R  L  S  L  F  F  L  G  L  L  T  L  Y  F  L  N  P  D  L  L  I  Y  *  *  N  K  E  Y  S  D  L  N  L  F  L  *  L  L  Y  K  K  L  Y  I  Q  Q  N  T  Y  V  M  H  Q  K  F  R  Q  G  I  M  F  E  S  Y  I  *  I  T  I  V  T  L  L  F  C  I  I  D  T  N  *  W  *  C  H  Y  F  R  I  *  Y  *  L  C  D  F  Y  F  F  Y  *  K  A  Y  M  G  S  I  S  F  I  I  K  H  S  G  H  W  T  E  D  N  C  Y  V  D  Y  S  T  E  A  I  M  I  K  E  Y  A  S  Y  K  D  L  V  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0070D18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 55 chains have been computed
$ 
$ memory statistics:
$ 27328 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2277 bytes was the average size of a spliced alignment
$ 18240 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1658 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 67 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-02 14:59:11
-->
