<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:29:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346241" ref_strand="+" ref_description="SGN-E346241 [cTOF-23-G16]">
      <seq>agacaggaaaatttggtcttgaaggattttaacattgccaatgaggctggtgggcctggtaaggccattgtgaagacgttcactgtaaatgtgacaagccacacactgaaaatccatttttactgggcaggaaaggggactacaggaattccatttagaggggtttatggtcctctaatttcagctatatcagttgttaatagtatgttcctttactctcttcaagtttatatatctgtcttgcttacaattgtatgctcaattctttttaaatgaatgaacattggacattattcttatgtactagtccttagaaaaaactttccgagaccaaatgactctatataccaaggcttaataagttttggttgaccatcttgatgttataaattctattcctactgattcattatgcatctaaaaccgctgtcaacatattctttaggaagtttatgtgtatccgaacctaagaacttcatatacccttgaatttcatgatgcatttcgaatacagtggggagaccactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="3863" stop="4992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4163" g_stop="4692" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E346241" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4163" e_stop="4692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGGAAAATTTGGTCTTGAAGGATTTTAACATTGCCAATGAGGCTGGTGGGCCTGGTAAGGCCATTGTGAAGACGTTCACTGTAAATGTGACAAGCCACACACTGAAAATCCATTTTTACTGGGCAGGAAAGGGGACTACAGGAATTCCATTTAGAGGGGTTTATGGTCCTCTAATTTCAGCTATATCAGTTGTTAATAGTATGTTCCTTTACTCTCTTCAAGTTTATATATCTGTCTTGCTTACAATTGTATGCTCAATTCTTTTTAAATGAATGAACATTGGACATTATTCTTATGTACTAGTCCTTAGAAAAAACTTTCCGAGACCAAATGACTCTATATACCAAGGCTTAATAAGTTTTGGTTGACCATCTTGATGTTATAAATTCTATTCCTACTGATTCATTATGCATCTAAAACCGCTGTCAACATATTCTTTAGGAAGTTTATGTGTATCCGAACCTAAGAAACTTCATATACCCTTGAATTTCATGATGCATTTCGAATACAGTGGGGAGACCACTTA</genome_strand>
        <mrna_strand>AGACAGGAAAATTTGGTCTTGAAGGATTTTAACATTGCCAATGAGGCTGGTGGGCCTGGTAAGGCCATTGTGAAGACGTTCACTGTAAATGTGACAAGCCACACACTGAAAATCCATTTTTACTGGGCAGGAAAGGGGACTACAGGAATTCCATTTAGAGGGGTTTATGGTCCTCTAATTTCAGCTATATCAGTTGTTAATAGTATGTTCCTTTACTCTCTTCAAGTTTATATATCTGTCTTGCTTACAATTGTATGCTCAATTCTTTTTAAATGAATGAACATTGGACATTATTCTTATGTACTAGTCCTTAGAAAAAACTTTCCGAGACCAAATGACTCTATATACCAAGGCTTAATAAGTTTTGGTTGACCATCTTGATGTTATAAATTCTATTCCTACTGATTCATTATGCATCTAAAACCGCTGTCAACATATTCTTTAGGAAGTTTATGTGTATCCGAACCTAAG-AACTTCATATACCCTTGAATTTCATGATGCATTTCGAATACAGTGGGGAGACCACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541100" ref_strand="+" ref_description="SGN-E541100 [TUS-61-L13](-)">
      <seq>tcaagatgtcctttctgatccagggatttcaacaagcggttcaggattcagatcaacgagaagtcacttctggcaaaatcaaagcctaactaatggtacgcttactgattccactctctcaactggaattgcggaagaaattggcattcttcaaagagtagagcctaatgtatctaacagttaaaacaaaatgtctgttaacacaagccaagtgtatatatgaacatcanaaatgtttaatgaatatgaagtttattcttttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="7574" stop="8439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7874" g_stop="8145" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E541100" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7874" e_stop="8145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGATGTCCTTTCTGATCCAGGGATTTCAACAAGCGGTTCAGGATTCAGATCAACGAGAAGTCACTTCTGGCAAAATCAAAGCCTAACTAATGGTACGCTTACTGATTCCACTCTCTCAACTGGAATTGCGGAAGAAATTGGCATTCTTCAAAGAGTAGAGCCTAATGTATCTAACAGTTAAAACAAAATGTCTGTTAACACAAG-CAAGTGTATATATGAACATCA-AAATGTTTAATGAATATGAAGTTTATTCTTTTACAAAACTGCTT</genome_strand>
        <mrna_strand>TCAAGATGTCCTTTCTGATCCAGGGATTTCAACAAGCGGTTCAGGATTCAGATCAACGAGAAGTCACTTCTGGCAAAATCAAAGCCTAACTAATGGTACGCTTACTGATTCCACTCTCTCAACTGGAATTGCGGAAGAAATTGGCATTCTTCAAAGAGTAGAGCCTAATGTATCTAACAGTTAAAACAAAATGTCTGTTAACACAAGCCAAGTGTATATATGAACATCANAAATGTTTAATGAATATGAAGTTTATTCTTTTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548494" ref_strand="+" ref_description="SGN-E548494 [TUS-61-L13]">
      <seq>tcaagatgtcctttctgatccagggatttcaacaagcggttcaggattcagatcaacgagaagtcacttctggcaaaatcaaagcctaactaatggtacgcttactgattccactctctcaactggaattgcggaagaaattggcattcttcaaagagtagagcctaatgtatctaacagttaaaacaaaatgtctgttaacacaagcaagtgtatatatgaacatcaaaatgtttaatgaatatgaagtttattcttttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="7574" stop="8439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7874" g_stop="8145" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E548494" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7874" e_stop="8145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGATGTCCTTTCTGATCCAGGGATTTCAACAAGCGGTTCAGGATTCAGATCAACGAGAAGTCACTTCTGGCAAAATCAAAGCCTAACTAATGGTACGCTTACTGATTCCACTCTCTCAACTGGAATTGCGGAAGAAATTGGCATTCTTCAAAGAGTAGAGCCTAATGTATCTAACAGTTAAAACAAAATGTCTGTTAACACAAGCAAGTGTATATATGAACATCAAAATGTTTAATGAATATGAAGTTTATTCTTTTACAAAACTGCTT</genome_strand>
        <mrna_strand>TCAAGATGTCCTTTCTGATCCAGGGATTTCAACAAGCGGTTCAGGATTCAGATCAACGAGAAGTCACTTCTGGCAAAATCAAAGCCTAACTAATGGTACGCTTACTGATTCCACTCTCTCAACTGGAATTGCGGAAGAAATTGGCATTCTTCAAAGAGTAGAGCCTAATGTATCTAACAGTTAAAACAAAATGTCTGTTAACACAAGCAAGTGTATATATGAACATCAAAATGTTTAATGAATATGAAGTTTATTCTTTTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296309" ref_strand="+" ref_description="SGN-E296309 [cLET-19-B3]">
      <seq>caagatgtcctttctgatccagggatttcaacaagcggttcaggattcagatcaacgagaacacgattctggcaaaatcaaagcctaactaatggtacgcttactgattccactctctcaactggaattgcggaagaaattggcattcttcaaagagtagagcctaatgtatctaacagttaaaacaaaatgtctgttaacacaagcaagtgtatatatgaacatcaaaatgtttaatgaatatgaagtttattcttttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="7575" stop="8439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7875" g_stop="8145" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E296309" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7875" e_stop="8145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGTCCTTTCTGATCCAGGGATTTCAACAAGCGGTTCAGGATTCAGATCAACGAGAAGTCACTTCTGGCAAAATCAAAGCCTAACTAATGGTACGCTTACTGATTCCACTCTCTCAACTGGAATTGCGGAAGAAATTGGCATTCTTCAAAGAGTAGAGCCTAATGTATCTAACAGTTAAAACAAAATGTCTGTTAACACAAGCAAGTGTATATATGAACATCAAAATGTTTAATGAATATGAAGTTTATTCTTTTACAAAACTGCTT</genome_strand>
        <mrna_strand>CAAGATGTCCTTTCTGATCCAGGGATTTCAACAAGCGGTTCAGGATTCAGATCAACGAGAACACGATTCTGGCAAAATCAAAGCCTAACTAATGGTACGCTTACTGATTCCACTCTCTCAACTGGAATTGCGGAAGAAATTGGCATTCTTCAAAGAGTAGAGCCTAATGTATCTAACAGTTAAAACAAAATGTCTGTTAACACAAGCAAGTGTATATATGAACATCAAAATGTTTAATGAATATGAAGTTTATTCTTTTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689052" ref_strand="+" ref_description="SGN-E689052 [t3_tus_55_O01]">
      <seq>cacccgctgaaacgcttccgatagtctttttggtatataacaaacctctgttcgccgtcttccatcaatcgatcgatttttaattttttgtgtttccgatgaatcttccgatgcgttgcagtttttaaactcgatcggaattcaagttcctttatcccttcccctacaaattcaattattatttttcagatatttgatcatcggcgtcggtcaggcgaattccagctccgatcacattccggtgtgagctggccagaatagattgaagcacgtactgagacataaaaggcgttttacaatgaggtgtaaggttccttcgctggtagatttatgtgttcggacagcagtagataatttgaggtaccttggggatgtgggtgaaacagacacttatctactagagcgcattttgcctcactgttctcttgaacaattgacacatgtggagaattcgacagaaggaagagatctcagtcaagtgactgatagactttggaagaggttttaccagattgagtttggtgacaagagcatcaatcaggtggttgagcgaatgaaagcagtgaaagtaacatttaaatggaaacagttatatgaggcgaagacacaggaaatggaggaaactcnacaagatcatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="14207" stop="18315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14507" g_stop="14747" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14748" i_stop="17397" i_length="2650">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17398" g_stop="17616" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="460" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17617" i_stop="17695" i_length="79">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17696" g_stop="17833" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="598" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17834" i_stop="17971" i_length="138">
            <donor d_prob="0.951" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17972" g_stop="18015" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="641" r_length="43" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E689052" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14507" e_stop="14747"/>
          <exon e_start="17398" e_stop="17616"/>
          <exon e_start="17696" e_stop="17833"/>
          <exon e_start="17972" e_stop="18015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGCGCTGAAACGCTTCCGATAGTCTTTTTGGGATATAACAAACCTCTGTTCGCCGTCTTCCATCAATCGATCGATTTTTAATTTTTTGTGTTTCCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCGGTGAGGTTCAATTCTCTTTTTGCTTCTATTTACGGTTTAAATTCTCATGTGGTACATAATTTTCATGTATGTGAATTTTCTTATGTTTAATTCCCGTTAATTTTCATTGCCAAGGCCGACAGTTTTGTGAATTCAACGATCCAATGGATTTTTATTGTTAATTGTAATTGAATTCATAATTTTCTTTCGTGTTGTTTTCTACCTAATCAATGTGATGCATAATCCATGAACTATAAATTTCTGAAATTTTATTCACTACTTTTCTTAAAGCAATACCACTGTACAGTTGATTTTTTTTTGAAGTGTTATTACATTGTTGATAGTTGTAGAAGTTTGAACTTGTGTGGAATTATGTGTTAAGCAACTAGTTATTGGACACGTGTGCTGCACGTATATTTCAAGAGATTTAGTAATTGTTGCGTGGAATTGTGTATTAAGCAACTAGTTATCGGACACGTGTGTTGCACGTAGATTTTGAGAGATTTAGTAATTATTGTGTGGAATTTTGTATTAAGCAACTAGGTATCGGACATGTGTGTTGCACGTAGATTTCGAGAGATTTAGTAATTGTTGCGTGGAATTGTTTATTAAGCAACTAGGTATCGGACTCGTGTGTTACACGTCTATTTCGAGAGATTTAGTAATTGTTGTGTGGAGTTGTGTATTAAGCAACTAGTTATCGGACATGTATGTTGCACGTGGATTTCGAGAGATTTAGTCATTTTTCCGTGGAATTATGTATAAAGCATGGAATTATGTATAAAGCAACTAGTCATCGGACATGTGTGTTGCACGTGTATTTCGAGAGATTAAGTAATTTACATAATTACATAAGATGATTGAAACATGTTATGTCACAGCATAAGTAAAGCAAAGATTTCATGAATGTGGTAGTTTGTTTAACAATTTGAGAATCCAGCTCGAAATAAGCCAATGTGAATTCTAGAGTAATAAAACAAAAATAATTCAATGTTGTCCTTGTTGCAACTCTAATGGTTATAGACATCCTAGTGAAAATTGTGTTGAAAGTGATAGACATTCTAGACTATTGATCATAATTAGATAGATGCTCAAGCATCAAAATTAAATGTTGTCTGACACTAAATTGAAGCATTGCTCATGATAGGAGAGTGATGAAAAGAAGAGGAAATTGATAGTTACATTTGGTTCAAACCTAATTAAGCTATTTCTAGCTCAGCCGCCTCCAACTCTCTATCTCAATTTCCATTGGTCGGTCTGCTTTCCAGAACAAATCCTTGTTCAGGTAAATCTTGAATTAGATTCCTGAAATTTACACAAATCATTTGTGAGTCCATTTTCTAACAGCCTCTTAATTCAATAGGAAAGTAGCTTCTTTTTTTTTATTAGAAATTTGTAAATCAATCTTCATTTGAACTTTAAGAAAATAAAAGATCAAACCTTTCTCTAAAGCAATCCAAAACAAGAATAAAAATTATTTCTTACAACTCGCACTTGTTCAGAACCTGATAGTTATACTTCTTCTACAGAAATGACATTTCTTTCTCTTCCCTTTACTTTTATTCTTCCCGTCCTTTGCAAATGGCAAGACTGATTGCCAAAATACACCTAAACTGATATATGATTATGAATTAGATTGGTCTTATTTAAAACAAAAATCACAAGAAAATAACCCCTGCGTTTTTGGAATTTTTCTATAGGTGTAAGGGAACAAATTATTTTAGAGGATATGACATTTTTTGATAGTTATGGAGCAAGACTTTTGAACATCCTTATATTCAATCGGAAGAGCATACATCACTTCAATTAAAAAATTAGTATTATTTATTGTCTTGACCCTTAACCTTTATATTCATCTGTTGCTTGAAAAATTCAATTATATGCTTTAAATAAGTTATTAATGTGTGGATTAAATTGTTGCCATTTGGGATTTGCTCAGGAAAAACAAATGGGCAGTTCCCTTTTTAATTTAACATGAAGATTGTGGGCTTTAAATATAGTGAATGGATGGAATGAATGAAAGGAGAAAATCAAGAAAATAAAACTTAATCAGATGACTACTGGACTTCATCTAAAAGGTAAGGAAATTTAAAATGTCATAACTTGTAAAGAATTAAAGTGTTGTGTGACATCCCAGCTTAGTATAAGAAGTCCCACATCGGCAAAACAAAGGAGAGATTTTGAGTATATAAGTAAGGTAAGCAGGTCTTACACCCTAGTGACACGTCCTAAAGTCATGCGGCCCTAGGCCGAAAATGGTATCACTAGCAGGTTGGGCTGTTACATGTTGGACTTCAAATTCTAACAATGTGTAATTAAAATATTTATTATTTTATTAGATATTTAGTCTGATTTTGTTGTTGTGGAGGGAAGAAATCCAACTTGAGCTTCCTACTTTGAGTATGATATATGGTATATGATATATGATATGCTATACACAAGCATCAATTGTAAATGTTCAAAAATGATAAATGTGAAAACAAGAAATTCAACTGTATCTGTTCAAGGAGTAATTTCTTGAAATTCAACAGGAAACATACAGAAGGTTAGCTGATAGACAGCAGGAAGCTATTGTTTACCTGGTTTAGTATTGAATGTACTAAATACTTCTAAATCTGGACTTTTACGTCTGGATTTTCTTTCTTCTGCTGATTAACTTTTTCATATGAAGGTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAAGTAAGAAACTCTATGATTAGGTTATCCTCTTGCAGTGTTACATATCAAGTCCATTTGTAATGCTCAAATTCTTCTTCAGGGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAGGTGATTTATCATATCATATTTTGTTTTTACTCCCTTATTATGATTTATGATATATGTTTAGTATTGAATCACATCTTCCTCTTATTGTTGTTACCAAATCATTCGACATTACAAAAGGGTATATCAATTTACTTGCAGGCGAAGACACAGGAAATGGAGGAAACTCAACAAAGATCATTTGA</genome_strand>
        <mrna_strand>CACCCGCTGAAACGCTTCCGATAGTCTTTTTGGTATATAACAAACCTCTGTTCGCCGTCTTCCATCAATCGATCGATTTTTAATTTTTTGTGTTTCCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAA...............................................................................GGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAAGCAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAG..........................................................................................................................................GCGAAGACACAGGAAATGGAGGAAACTCNAC-AAGATCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551498" ref_strand="+" ref_description="SGN-E551498 [TUS-55-O1]">
      <seq>cacccgctgaaacgcttccgatagtctttttggtatataacaaacctctgttcgccgtcttccatcaatcgatcgatttttaattttttgtgtttccgatgaatcttccgatgcgttgcagtttttaaactcgatcggaattcaagttcctttatcccttcccctacaaattcaattattatttttcagatatttgatcatcggcgtcggtcaggcgaattccagctccgatcacattccggtgtgagctggccagaatagattgaagcacgtactgagacataaaaggcgttttacaatgaggtgtaaggttccttcgctggtagatttatgtgttcggacagcagtagataatttgaggtaccttggggatgtgggtgaaacagacacttatctactagagcgcattttgcctcactgttctcttgaacaattgacacatgtggagaattcgacagaaggaagagatctcagtcaagtgactgatagactttggaagaggttttaccagattgagtttggtgacaagagcatcaatcaggtggttgagcgaatgaagccagtgaaagtaacatttaaatggaaacagttatatgaggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="14207" stop="18137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14507" g_stop="14747" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14748" i_stop="17397" i_length="2650">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17398" g_stop="17616" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="460" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17617" i_stop="17695" i_length="79">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17696" g_stop="17833" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="598" r_length="138" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E551498" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14507" e_stop="14747"/>
          <exon e_start="17398" e_stop="17616"/>
          <exon e_start="17696" e_stop="17833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGCGCTGAAACGCTTCCGATAGTCTTTTTGGGATATAACAAACCTCTGTTCGCCGTCTTCCATCAATCGATCGATTTTTAATTTTTTGTGTTTCCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCGGTGAGGTTCAATTCTCTTTTTGCTTCTATTTACGGTTTAAATTCTCATGTGGTACATAATTTTCATGTATGTGAATTTTCTTATGTTTAATTCCCGTTAATTTTCATTGCCAAGGCCGACAGTTTTGTGAATTCAACGATCCAATGGATTTTTATTGTTAATTGTAATTGAATTCATAATTTTCTTTCGTGTTGTTTTCTACCTAATCAATGTGATGCATAATCCATGAACTATAAATTTCTGAAATTTTATTCACTACTTTTCTTAAAGCAATACCACTGTACAGTTGATTTTTTTTTGAAGTGTTATTACATTGTTGATAGTTGTAGAAGTTTGAACTTGTGTGGAATTATGTGTTAAGCAACTAGTTATTGGACACGTGTGCTGCACGTATATTTCAAGAGATTTAGTAATTGTTGCGTGGAATTGTGTATTAAGCAACTAGTTATCGGACACGTGTGTTGCACGTAGATTTTGAGAGATTTAGTAATTATTGTGTGGAATTTTGTATTAAGCAACTAGGTATCGGACATGTGTGTTGCACGTAGATTTCGAGAGATTTAGTAATTGTTGCGTGGAATTGTTTATTAAGCAACTAGGTATCGGACTCGTGTGTTACACGTCTATTTCGAGAGATTTAGTAATTGTTGTGTGGAGTTGTGTATTAAGCAACTAGTTATCGGACATGTATGTTGCACGTGGATTTCGAGAGATTTAGTCATTTTTCCGTGGAATTATGTATAAAGCATGGAATTATGTATAAAGCAACTAGTCATCGGACATGTGTGTTGCACGTGTATTTCGAGAGATTAAGTAATTTACATAATTACATAAGATGATTGAAACATGTTATGTCACAGCATAAGTAAAGCAAAGATTTCATGAATGTGGTAGTTTGTTTAACAATTTGAGAATCCAGCTCGAAATAAGCCAATGTGAATTCTAGAGTAATAAAACAAAAATAATTCAATGTTGTCCTTGTTGCAACTCTAATGGTTATAGACATCCTAGTGAAAATTGTGTTGAAAGTGATAGACATTCTAGACTATTGATCATAATTAGATAGATGCTCAAGCATCAAAATTAAATGTTGTCTGACACTAAATTGAAGCATTGCTCATGATAGGAGAGTGATGAAAAGAAGAGGAAATTGATAGTTACATTTGGTTCAAACCTAATTAAGCTATTTCTAGCTCAGCCGCCTCCAACTCTCTATCTCAATTTCCATTGGTCGGTCTGCTTTCCAGAACAAATCCTTGTTCAGGTAAATCTTGAATTAGATTCCTGAAATTTACACAAATCATTTGTGAGTCCATTTTCTAACAGCCTCTTAATTCAATAGGAAAGTAGCTTCTTTTTTTTTATTAGAAATTTGTAAATCAATCTTCATTTGAACTTTAAGAAAATAAAAGATCAAACCTTTCTCTAAAGCAATCCAAAACAAGAATAAAAATTATTTCTTACAACTCGCACTTGTTCAGAACCTGATAGTTATACTTCTTCTACAGAAATGACATTTCTTTCTCTTCCCTTTACTTTTATTCTTCCCGTCCTTTGCAAATGGCAAGACTGATTGCCAAAATACACCTAAACTGATATATGATTATGAATTAGATTGGTCTTATTTAAAACAAAAATCACAAGAAAATAACCCCTGCGTTTTTGGAATTTTTCTATAGGTGTAAGGGAACAAATTATTTTAGAGGATATGACATTTTTTGATAGTTATGGAGCAAGACTTTTGAACATCCTTATATTCAATCGGAAGAGCATACATCACTTCAATTAAAAAATTAGTATTATTTATTGTCTTGACCCTTAACCTTTATATTCATCTGTTGCTTGAAAAATTCAATTATATGCTTTAAATAAGTTATTAATGTGTGGATTAAATTGTTGCCATTTGGGATTTGCTCAGGAAAAACAAATGGGCAGTTCCCTTTTTAATTTAACATGAAGATTGTGGGCTTTAAATATAGTGAATGGATGGAATGAATGAAAGGAGAAAATCAAGAAAATAAAACTTAATCAGATGACTACTGGACTTCATCTAAAAGGTAAGGAAATTTAAAATGTCATAACTTGTAAAGAATTAAAGTGTTGTGTGACATCCCAGCTTAGTATAAGAAGTCCCACATCGGCAAAACAAAGGAGAGATTTTGAGTATATAAGTAAGGTAAGCAGGTCTTACACCCTAGTGACACGTCCTAAAGTCATGCGGCCCTAGGCCGAAAATGGTATCACTAGCAGGTTGGGCTGTTACATGTTGGACTTCAAATTCTAACAATGTGTAATTAAAATATTTATTATTTTATTAGATATTTAGTCTGATTTTGTTGTTGTGGAGGGAAGAAATCCAACTTGAGCTTCCTACTTTGAGTATGATATATGGTATATGATATATGATATGCTATACACAAGCATCAATTGTAAATGTTCAAAAATGATAAATGTGAAAACAAGAAATTCAACTGTATCTGTTCAAGGAGTAATTTCTTGAAATTCAACAGGAAACATACAGAAGGTTAGCTGATAGACAGCAGGAAGCTATTGTTTACCTGGTTTAGTATTGAATGTACTAAATACTTCTAAATCTGGACTTTTACGTCTGGATTTTCTTTCTTCTGCTGATTAACTTTTTCATATGAAGGTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAAGTAAGAAACTCTATGATTAGGTTATCCTCTTGCAGTGTTACATATCAAGTCCATTTGTAATGCTCAAATTCTTCTTCAGGGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAG</genome_strand>
        <mrna_strand>CACCCGCTGAAACGCTTCCGATAGTCTTTTTGGTATATAACAAACCTCTGTTCGCCGTCTTCCATCAATCGATCGATTTTTAATTTTTTGTGTTTCCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAA...............................................................................GGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCCAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301556" ref_strand="+" ref_description="SGN-E301556 [cLEW-23-D21]">
      <seq>ttcgccgtcttccatcaatcgatcgaggtttaatttttggtgtttccgatgaatcttccgatgcgttgcagtttttaaactcgatcggaattcaagttcctttatcccttcccctgcaaattcaattattatttttcagatatttgatcatcggcgtcggtcaggcgaattccagctccgatcacattccggtgtgagctggccagaatagattgaagcacgtactgagacataaaaggcgttttacaatgaggtgtcaggttccttcgctggtagatctatgtgttcggacagcagtagataatctgaggtaccttggggatgtgggtgaaacatacacttatctactagagcgcatgttgcctcactgctctcttgaacaatcgacacatgtggagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="14257" stop="17908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14557" g_stop="14747" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14748" i_stop="17397" i_length="2650">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17398" g_stop="17608" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="402" r_length="211" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E301556" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14557" e_stop="14747"/>
          <exon e_start="17398" e_stop="17608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGTCTTCCATCAATCGATCGATTTTTAATTTTTTGTGTTTCCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCGGTGAGGTTCAATTCTCTTTTTGCTTCTATTTACGGTTTAAATTCTCATGTGGTACATAATTTTCATGTATGTGAATTTTCTTATGTTTAATTCCCGTTAATTTTCATTGCCAAGGCCGACAGTTTTGTGAATTCAACGATCCAATGGATTTTTATTGTTAATTGTAATTGAATTCATAATTTTCTTTCGTGTTGTTTTCTACCTAATCAATGTGATGCATAATCCATGAACTATAAATTTCTGAAATTTTATTCACTACTTTTCTTAAAGCAATACCACTGTACAGTTGATTTTTTTTTGAAGTGTTATTACATTGTTGATAGTTGTAGAAGTTTGAACTTGTGTGGAATTATGTGTTAAGCAACTAGTTATTGGACACGTGTGCTGCACGTATATTTCAAGAGATTTAGTAATTGTTGCGTGGAATTGTGTATTAAGCAACTAGTTATCGGACACGTGTGTTGCACGTAGATTTTGAGAGATTTAGTAATTATTGTGTGGAATTTTGTATTAAGCAACTAGGTATCGGACATGTGTGTTGCACGTAGATTTCGAGAGATTTAGTAATTGTTGCGTGGAATTGTTTATTAAGCAACTAGGTATCGGACTCGTGTGTTACACGTCTATTTCGAGAGATTTAGTAATTGTTGTGTGGAGTTGTGTATTAAGCAACTAGTTATCGGACATGTATGTTGCACGTGGATTTCGAGAGATTTAGTCATTTTTCCGTGGAATTATGTATAAAGCATGGAATTATGTATAAAGCAACTAGTCATCGGACATGTGTGTTGCACGTGTATTTCGAGAGATTAAGTAATTTACATAATTACATAAGATGATTGAAACATGTTATGTCACAGCATAAGTAAAGCAAAGATTTCATGAATGTGGTAGTTTGTTTAACAATTTGAGAATCCAGCTCGAAATAAGCCAATGTGAATTCTAGAGTAATAAAACAAAAATAATTCAATGTTGTCCTTGTTGCAACTCTAATGGTTATAGACATCCTAGTGAAAATTGTGTTGAAAGTGATAGACATTCTAGACTATTGATCATAATTAGATAGATGCTCAAGCATCAAAATTAAATGTTGTCTGACACTAAATTGAAGCATTGCTCATGATAGGAGAGTGATGAAAAGAAGAGGAAATTGATAGTTACATTTGGTTCAAACCTAATTAAGCTATTTCTAGCTCAGCCGCCTCCAACTCTCTATCTCAATTTCCATTGGTCGGTCTGCTTTCCAGAACAAATCCTTGTTCAGGTAAATCTTGAATTAGATTCCTGAAATTTACACAAATCATTTGTGAGTCCATTTTCTAACAGCCTCTTAATTCAATAGGAAAGTAGCTTCTTTTTTTTTATTAGAAATTTGTAAATCAATCTTCATTTGAACTTTAAGAAAATAAAAGATCAAACCTTTCTCTAAAGCAATCCAAAACAAGAATAAAAATTATTTCTTACAACTCGCACTTGTTCAGAACCTGATAGTTATACTTCTTCTACAGAAATGACATTTCTTTCTCTTCCCTTTACTTTTATTCTTCCCGTCCTTTGCAAATGGCAAGACTGATTGCCAAAATACACCTAAACTGATATATGATTATGAATTAGATTGGTCTTATTTAAAACAAAAATCACAAGAAAATAACCCCTGCGTTTTTGGAATTTTTCTATAGGTGTAAGGGAACAAATTATTTTAGAGGATATGACATTTTTTGATAGTTATGGAGCAAGACTTTTGAACATCCTTATATTCAATCGGAAGAGCATACATCACTTCAATTAAAAAATTAGTATTATTTATTGTCTTGACCCTTAACCTTTATATTCATCTGTTGCTTGAAAAATTCAATTATATGCTTTAAATAAGTTATTAATGTGTGGATTAAATTGTTGCCATTTGGGATTTGCTCAGGAAAAACAAATGGGCAGTTCCCTTTTTAATTTAACATGAAGATTGTGGGCTTTAAATATAGTGAATGGATGGAATGAATGAAAGGAGAAAATCAAGAAAATAAAACTTAATCAGATGACTACTGGACTTCATCTAAAAGGTAAGGAAATTTAAAATGTCATAACTTGTAAAGAATTAAAGTGTTGTGTGACATCCCAGCTTAGTATAAGAAGTCCCACATCGGCAAAACAAAGGAGAGATTTTGAGTATATAAGTAAGGTAAGCAGGTCTTACACCCTAGTGACACGTCCTAAAGTCATGCGGCCCTAGGCCGAAAATGGTATCACTAGCAGGTTGGGCTGTTACATGTTGGACTTCAAATTCTAACAATGTGTAATTAAAATATTTATTATTTTATTAGATATTTAGTCTGATTTTGTTGTTGTGGAGGGAAGAAATCCAACTTGAGCTTCCTACTTTGAGTATGATATATGGTATATGATATATGATATGCTATACACAAGCATCAATTGTAAATGTTCAAAAATGATAAATGTGAAAACAAGAAATTCAACTGTATCTGTTCAAGGAGTAATTTCTTGAAATTCAACAGGAAACATACAGAAGGTTAGCTGATAGACAGCAGGAAGCTATTGTTTACCTGGTTTAGTATTGAATGTACTAAATACTTCTAAATCTGGACTTTTACGTCTGGATTTTCTTTCTTCTGCTGATTAACTTTTTCATATGAAGGTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATT</genome_strand>
        <mrna_strand>TTCGCCGTCTTCCATCAATCGATCGAGGTTTAATTTTTGGTGTTTCCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTGCAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTCAGGTTCCTTCGCTGGTAGATCTATGTGTTCGGACAGCAGTAGATAATCTGAGGTACCTTGGGGATGTGGGTGAAACATACACTTATCTACTAGAGCGCATGTTGCCTCACTGCTCTCTTGAACAATCGACACATGTGGAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326057" ref_strand="+" ref_description="SGN-E326057 [cTOC-16-I17]">
      <seq>taattttttgtgtttccgatgaatcttccgatgcgttgcagtttttaaactcgatcggaattcaagttcctttatcccttcccctacaaattcaattattatttttcagatatttgatcatcggcgtcggtcaggcgaattccagctccgatcacattccggagagtgatgaaaagaagaggaaattgatagttacatttggttcaaacctaattaagctatttctagctcagccgcctccaactctctatctcaatttccattggtcggtctgctttccagaacaaatccttgttcaggtgtgagctggccagaatagattgaagcacgtactgagacataaaaggcgttttacaatgaggtgtaaggttccttcgctggtagatttatgtgttcggacagcagtagataatttgaggtaccttggggatgtgggtgaaacagacacttatctactagagcgcattttgcctcactgttctcttgaacaattgacacatgtggagaattcgacagaaggaagagatctcagtcaagtgactgatagactttggaagaggttttaccagattgagcttggtgacaagagcatcaatcaggtggttgagcgaatgaagcaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="14287" stop="18101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14587" g_stop="14747" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14748" i_stop="15873" i_length="1126">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15874" g_stop="16011" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="299" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16012" i_stop="17397" i_length="1386">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17398" g_stop="17616" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="518" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17617" i_stop="17695" i_length="79">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17696" g_stop="17801" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="624" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E326057" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14587" e_stop="14747"/>
          <exon e_start="15874" e_stop="16011"/>
          <exon e_start="17398" e_stop="17616"/>
          <exon e_start="17696" e_stop="17801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTTTGTGTTTCCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCGGTGAGGTTCAATTCTCTTTTTGCTTCTATTTACGGTTTAAATTCTCATGTGGTACATAATTTTCATGTATGTGAATTTTCTTATGTTTAATTCCCGTTAATTTTCATTGCCAAGGCCGACAGTTTTGTGAATTCAACGATCCAATGGATTTTTATTGTTAATTGTAATTGAATTCATAATTTTCTTTCGTGTTGTTTTCTACCTAATCAATGTGATGCATAATCCATGAACTATAAATTTCTGAAATTTTATTCACTACTTTTCTTAAAGCAATACCACTGTACAGTTGATTTTTTTTTGAAGTGTTATTACATTGTTGATAGTTGTAGAAGTTTGAACTTGTGTGGAATTATGTGTTAAGCAACTAGTTATTGGACACGTGTGCTGCACGTATATTTCAAGAGATTTAGTAATTGTTGCGTGGAATTGTGTATTAAGCAACTAGTTATCGGACACGTGTGTTGCACGTAGATTTTGAGAGATTTAGTAATTATTGTGTGGAATTTTGTATTAAGCAACTAGGTATCGGACATGTGTGTTGCACGTAGATTTCGAGAGATTTAGTAATTGTTGCGTGGAATTGTTTATTAAGCAACTAGGTATCGGACTCGTGTGTTACACGTCTATTTCGAGAGATTTAGTAATTGTTGTGTGGAGTTGTGTATTAAGCAACTAGTTATCGGACATGTATGTTGCACGTGGATTTCGAGAGATTTAGTCATTTTTCCGTGGAATTATGTATAAAGCATGGAATTATGTATAAAGCAACTAGTCATCGGACATGTGTGTTGCACGTGTATTTCGAGAGATTAAGTAATTTACATAATTACATAAGATGATTGAAACATGTTATGTCACAGCATAAGTAAAGCAAAGATTTCATGAATGTGGTAGTTTGTTTAACAATTTGAGAATCCAGCTCGAAATAAGCCAATGTGAATTCTAGAGTAATAAAACAAAAATAATTCAATGTTGTCCTTGTTGCAACTCTAATGGTTATAGACATCCTAGTGAAAATTGTGTTGAAAGTGATAGACATTCTAGACTATTGATCATAATTAGATAGATGCTCAAGCATCAAAATTAAATGTTGTCTGACACTAAATTGAAGCATTGCTCATGATAGGAGAGTGATGAAAAGAAGAGGAAATTGATAGTTACATTTGGTTCAAACCTAATTAAGCTATTTCTAGCTCAGCCGCCTCCAACTCTCTATCTCAATTTCCATTGGTCGGTCTGCTTTCCAGAACAAATCCTTGTTCAGGTAAATCTTGAATTAGATTCCTGAAATTTACACAAATCATTTGTGAGTCCATTTTCTAACAGCCTCTTAATTCAATAGGAAAGTAGCTTCTTTTTTTTTATTAGAAATTTGTAAATCAATCTTCATTTGAACTTTAAGAAAATAAAAGATCAAACCTTTCTCTAAAGCAATCCAAAACAAGAATAAAAATTATTTCTTACAACTCGCACTTGTTCAGAACCTGATAGTTATACTTCTTCTACAGAAATGACATTTCTTTCTCTTCCCTTTACTTTTATTCTTCCCGTCCTTTGCAAATGGCAAGACTGATTGCCAAAATACACCTAAACTGATATATGATTATGAATTAGATTGGTCTTATTTAAAACAAAAATCACAAGAAAATAACCCCTGCGTTTTTGGAATTTTTCTATAGGTGTAAGGGAACAAATTATTTTAGAGGATATGACATTTTTTGATAGTTATGGAGCAAGACTTTTGAACATCCTTATATTCAATCGGAAGAGCATACATCACTTCAATTAAAAAATTAGTATTATTTATTGTCTTGACCCTTAACCTTTATATTCATCTGTTGCTTGAAAAATTCAATTATATGCTTTAAATAAGTTATTAATGTGTGGATTAAATTGTTGCCATTTGGGATTTGCTCAGGAAAAACAAATGGGCAGTTCCCTTTTTAATTTAACATGAAGATTGTGGGCTTTAAATATAGTGAATGGATGGAATGAATGAAAGGAGAAAATCAAGAAAATAAAACTTAATCAGATGACTACTGGACTTCATCTAAAAGGTAAGGAAATTTAAAATGTCATAACTTGTAAAGAATTAAAGTGTTGTGTGACATCCCAGCTTAGTATAAGAAGTCCCACATCGGCAAAACAAAGGAGAGATTTTGAGTATATAAGTAAGGTAAGCAGGTCTTACACCCTAGTGACACGTCCTAAAGTCATGCGGCCCTAGGCCGAAAATGGTATCACTAGCAGGTTGGGCTGTTACATGTTGGACTTCAAATTCTAACAATGTGTAATTAAAATATTTATTATTTTATTAGATATTTAGTCTGATTTTGTTGTTGTGGAGGGAAGAAATCCAACTTGAGCTTCCTACTTTGAGTATGATATATGGTATATGATATATGATATGCTATACACAAGCATCAATTGTAAATGTTCAAAAATGATAAATGTGAAAACAAGAAATTCAACTGTATCTGTTCAAGGAGTAATTTCTTGAAATTCAACAGGAAACATACAGAAGGTTAGCTGATAGACAGCAGGAAGCTATTGTTTACCTGGTTTAGTATTGAATGTACTAAATACTTCTAAATCTGGACTTTTACGTCTGGATTTTCTTTCTTCTGCTGATTAACTTTTTCATATGAAGGTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAAGTAAGAAACTCTATGATTAGGTTATCCTCTTGCAGTGTTACATATCAAGTCCATTTGTAATGCTCAAATTCTTCTTCAGGGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGA</genome_strand>
        <mrna_strand>TAATTTTTTGTGTTTCCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTGATGAAAAGAAGAGGAAATTGATAGTTACATTTGGTTCAAACCTAATTAAGCTATTTCTAGCTCAGCCGCCTCCAACTCTCTATCTCAATTTCCATTGGTCGGTCTGCTTTCCAGAACAAATCCTTGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAA...............................................................................GGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGCTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285128" ref_strand="+" ref_description="SGN-E285128 [cLER-20-A6]">
      <seq>ttttgtgttttcgatgaatcttccgatgcgttgcagtttttaaactcgatcggaattcaagttcctttatcccttcccctacaaattcaattattatttttcagatatttgatcatcggcgtcggtcaggcgaattccagctccgatcacattccggtgtgagctggccagaatagattgaagcacgtactgagacataaaaggcgttttacaatgaggtgtaaggttccttcgctggtagatttatgtgttcggacagcagtagataatttgaggtaccttggggatgtgggtgaaacagacacttatctactagagcgcattttgcctcactgttctcttgaacaattgacacatgtggagaattcgacagaaggaagagatctcagtcaagtgactgatagactttggaagaggttttaccagattgagtttggtgacaagagcatcaatcaggtggttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="14292" stop="18085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14592" g_stop="14747" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14748" i_stop="17397" i_length="2650">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17398" g_stop="17616" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="375" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17617" i_stop="17695" i_length="79">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17696" g_stop="17785" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="465" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E285128" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14592" e_stop="14747"/>
          <exon e_start="17398" e_stop="17616"/>
          <exon e_start="17696" e_stop="17785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGTTTCCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCGGTGAGGTTCAATTCTCTTTTTGCTTCTATTTACGGTTTAAATTCTCATGTGGTACATAATTTTCATGTATGTGAATTTTCTTATGTTTAATTCCCGTTAATTTTCATTGCCAAGGCCGACAGTTTTGTGAATTCAACGATCCAATGGATTTTTATTGTTAATTGTAATTGAATTCATAATTTTCTTTCGTGTTGTTTTCTACCTAATCAATGTGATGCATAATCCATGAACTATAAATTTCTGAAATTTTATTCACTACTTTTCTTAAAGCAATACCACTGTACAGTTGATTTTTTTTTGAAGTGTTATTACATTGTTGATAGTTGTAGAAGTTTGAACTTGTGTGGAATTATGTGTTAAGCAACTAGTTATTGGACACGTGTGCTGCACGTATATTTCAAGAGATTTAGTAATTGTTGCGTGGAATTGTGTATTAAGCAACTAGTTATCGGACACGTGTGTTGCACGTAGATTTTGAGAGATTTAGTAATTATTGTGTGGAATTTTGTATTAAGCAACTAGGTATCGGACATGTGTGTTGCACGTAGATTTCGAGAGATTTAGTAATTGTTGCGTGGAATTGTTTATTAAGCAACTAGGTATCGGACTCGTGTGTTACACGTCTATTTCGAGAGATTTAGTAATTGTTGTGTGGAGTTGTGTATTAAGCAACTAGTTATCGGACATGTATGTTGCACGTGGATTTCGAGAGATTTAGTCATTTTTCCGTGGAATTATGTATAAAGCATGGAATTATGTATAAAGCAACTAGTCATCGGACATGTGTGTTGCACGTGTATTTCGAGAGATTAAGTAATTTACATAATTACATAAGATGATTGAAACATGTTATGTCACAGCATAAGTAAAGCAAAGATTTCATGAATGTGGTAGTTTGTTTAACAATTTGAGAATCCAGCTCGAAATAAGCCAATGTGAATTCTAGAGTAATAAAACAAAAATAATTCAATGTTGTCCTTGTTGCAACTCTAATGGTTATAGACATCCTAGTGAAAATTGTGTTGAAAGTGATAGACATTCTAGACTATTGATCATAATTAGATAGATGCTCAAGCATCAAAATTAAATGTTGTCTGACACTAAATTGAAGCATTGCTCATGATAGGAGAGTGATGAAAAGAAGAGGAAATTGATAGTTACATTTGGTTCAAACCTAATTAAGCTATTTCTAGCTCAGCCGCCTCCAACTCTCTATCTCAATTTCCATTGGTCGGTCTGCTTTCCAGAACAAATCCTTGTTCAGGTAAATCTTGAATTAGATTCCTGAAATTTACACAAATCATTTGTGAGTCCATTTTCTAACAGCCTCTTAATTCAATAGGAAAGTAGCTTCTTTTTTTTTATTAGAAATTTGTAAATCAATCTTCATTTGAACTTTAAGAAAATAAAAGATCAAACCTTTCTCTAAAGCAATCCAAAACAAGAATAAAAATTATTTCTTACAACTCGCACTTGTTCAGAACCTGATAGTTATACTTCTTCTACAGAAATGACATTTCTTTCTCTTCCCTTTACTTTTATTCTTCCCGTCCTTTGCAAATGGCAAGACTGATTGCCAAAATACACCTAAACTGATATATGATTATGAATTAGATTGGTCTTATTTAAAACAAAAATCACAAGAAAATAACCCCTGCGTTTTTGGAATTTTTCTATAGGTGTAAGGGAACAAATTATTTTAGAGGATATGACATTTTTTGATAGTTATGGAGCAAGACTTTTGAACATCCTTATATTCAATCGGAAGAGCATACATCACTTCAATTAAAAAATTAGTATTATTTATTGTCTTGACCCTTAACCTTTATATTCATCTGTTGCTTGAAAAATTCAATTATATGCTTTAAATAAGTTATTAATGTGTGGATTAAATTGTTGCCATTTGGGATTTGCTCAGGAAAAACAAATGGGCAGTTCCCTTTTTAATTTAACATGAAGATTGTGGGCTTTAAATATAGTGAATGGATGGAATGAATGAAAGGAGAAAATCAAGAAAATAAAACTTAATCAGATGACTACTGGACTTCATCTAAAAGGTAAGGAAATTTAAAATGTCATAACTTGTAAAGAATTAAAGTGTTGTGTGACATCCCAGCTTAGTATAAGAAGTCCCACATCGGCAAAACAAAGGAGAGATTTTGAGTATATAAGTAAGGTAAGCAGGTCTTACACCCTAGTGACACGTCCTAAAGTCATGCGGCCCTAGGCCGAAAATGGTATCACTAGCAGGTTGGGCTGTTACATGTTGGACTTCAAATTCTAACAATGTGTAATTAAAATATTTATTATTTTATTAGATATTTAGTCTGATTTTGTTGTTGTGGAGGGAAGAAATCCAACTTGAGCTTCCTACTTTGAGTATGATATATGGTATATGATATATGATATGCTATACACAAGCATCAATTGTAAATGTTCAAAAATGATAAATGTGAAAACAAGAAATTCAACTGTATCTGTTCAAGGAGTAATTTCTTGAAATTCAACAGGAAACATACAGAAGGTTAGCTGATAGACAGCAGGAAGCTATTGTTTACCTGGTTTAGTATTGAATGTACTAAATACTTCTAAATCTGGACTTTTACGTCTGGATTTTCTTTCTTCTGCTGATTAACTTTTTCATATGAAGGTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAAGTAAGAAACTCTATGATTAGGTTATCCTCTTGCAGTGTTACATATCAAGTCCATTTGTAATGCTCAAATTCTTCTTCAGGGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAG</genome_strand>
        <mrna_strand>TTTTGTGTTTTCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAA...............................................................................GGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729393" ref_strand="+" ref_description="SGN-E729393 [LA20DF12]">
      <seq>ccgatgcgttgcagtttttaaactcgatcggaattcaagttcctttatcccttcccctacaaattcaattattatttttcagatatttgatctgcggcgtcggtcaggcgaattccagctccgatcacattccggtgaggagagtgatgaaaagaagaggaaattgatagttacatttggttcaaacctaattaagctatttctagctcagccgcctccaactctctatctcaatttccattggtcggtctgctttccagaacaaatccttgttcaggtgtgagctggccagaatagattgaagcacgtactgagacacaaaaggcgttttacaatgaggtgtaaggttccttcgctggtagatttatgtgttcggacagcagtagataatttgaggtaccttggggatgtgggtgaaacagacacttatctactagagcgcattttgcctcactgttctcttgaacaattgacacatgtggagaattcgacagaaggaagagatctcagtcaagtgactgatagactttggaagaggctctaccagattgagtttggtgacaagagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="14314" stop="18069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14614" g_stop="14752" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14753" i_stop="15873" i_length="1121">
            <donor d_prob="0.932" d_score="0.96"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15874" g_stop="16011" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="277" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16012" i_stop="17397" i_length="1386">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17398" g_stop="17616" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="496" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17617" i_stop="17695" i_length="79">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17696" g_stop="17769" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="570" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E729393" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14614" e_stop="14752"/>
          <exon e_start="15874" e_stop="16011"/>
          <exon e_start="17398" e_stop="17616"/>
          <exon e_start="17696" e_stop="17769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCGGTGAGGTTCAATTCTCTTTTTGCTTCTATTTACGGTTTAAATTCTCATGTGGTACATAATTTTCATGTATGTGAATTTTCTTATGTTTAATTCCCGTTAATTTTCATTGCCAAGGCCGACAGTTTTGTGAATTCAACGATCCAATGGATTTTTATTGTTAATTGTAATTGAATTCATAATTTTCTTTCGTGTTGTTTTCTACCTAATCAATGTGATGCATAATCCATGAACTATAAATTTCTGAAATTTTATTCACTACTTTTCTTAAAGCAATACCACTGTACAGTTGATTTTTTTTTGAAGTGTTATTACATTGTTGATAGTTGTAGAAGTTTGAACTTGTGTGGAATTATGTGTTAAGCAACTAGTTATTGGACACGTGTGCTGCACGTATATTTCAAGAGATTTAGTAATTGTTGCGTGGAATTGTGTATTAAGCAACTAGTTATCGGACACGTGTGTTGCACGTAGATTTTGAGAGATTTAGTAATTATTGTGTGGAATTTTGTATTAAGCAACTAGGTATCGGACATGTGTGTTGCACGTAGATTTCGAGAGATTTAGTAATTGTTGCGTGGAATTGTTTATTAAGCAACTAGGTATCGGACTCGTGTGTTACACGTCTATTTCGAGAGATTTAGTAATTGTTGTGTGGAGTTGTGTATTAAGCAACTAGTTATCGGACATGTATGTTGCACGTGGATTTCGAGAGATTTAGTCATTTTTCCGTGGAATTATGTATAAAGCATGGAATTATGTATAAAGCAACTAGTCATCGGACATGTGTGTTGCACGTGTATTTCGAGAGATTAAGTAATTTACATAATTACATAAGATGATTGAAACATGTTATGTCACAGCATAAGTAAAGCAAAGATTTCATGAATGTGGTAGTTTGTTTAACAATTTGAGAATCCAGCTCGAAATAAGCCAATGTGAATTCTAGAGTAATAAAACAAAAATAATTCAATGTTGTCCTTGTTGCAACTCTAATGGTTATAGACATCCTAGTGAAAATTGTGTTGAAAGTGATAGACATTCTAGACTATTGATCATAATTAGATAGATGCTCAAGCATCAAAATTAAATGTTGTCTGACACTAAATTGAAGCATTGCTCATGATAGGAGAGTGATGAAAAGAAGAGGAAATTGATAGTTACATTTGGTTCAAACCTAATTAAGCTATTTCTAGCTCAGCCGCCTCCAACTCTCTATCTCAATTTCCATTGGTCGGTCTGCTTTCCAGAACAAATCCTTGTTCAGGTAAATCTTGAATTAGATTCCTGAAATTTACACAAATCATTTGTGAGTCCATTTTCTAACAGCCTCTTAATTCAATAGGAAAGTAGCTTCTTTTTTTTTATTAGAAATTTGTAAATCAATCTTCATTTGAACTTTAAGAAAATAAAAGATCAAACCTTTCTCTAAAGCAATCCAAAACAAGAATAAAAATTATTTCTTACAACTCGCACTTGTTCAGAACCTGATAGTTATACTTCTTCTACAGAAATGACATTTCTTTCTCTTCCCTTTACTTTTATTCTTCCCGTCCTTTGCAAATGGCAAGACTGATTGCCAAAATACACCTAAACTGATATATGATTATGAATTAGATTGGTCTTATTTAAAACAAAAATCACAAGAAAATAACCCCTGCGTTTTTGGAATTTTTCTATAGGTGTAAGGGAACAAATTATTTTAGAGGATATGACATTTTTTGATAGTTATGGAGCAAGACTTTTGAACATCCTTATATTCAATCGGAAGAGCATACATCACTTCAATTAAAAAATTAGTATTATTTATTGTCTTGACCCTTAACCTTTATATTCATCTGTTGCTTGAAAAATTCAATTATATGCTTTAAATAAGTTATTAATGTGTGGATTAAATTGTTGCCATTTGGGATTTGCTCAGGAAAAACAAATGGGCAGTTCCCTTTTTAATTTAACATGAAGATTGTGGGCTTTAAATATAGTGAATGGATGGAATGAATGAAAGGAGAAAATCAAGAAAATAAAACTTAATCAGATGACTACTGGACTTCATCTAAAAGGTAAGGAAATTTAAAATGTCATAACTTGTAAAGAATTAAAGTGTTGTGTGACATCCCAGCTTAGTATAAGAAGTCCCACATCGGCAAAACAAAGGAGAGATTTTGAGTATATAAGTAAGGTAAGCAGGTCTTACACCCTAGTGACACGTCCTAAAGTCATGCGGCCCTAGGCCGAAAATGGTATCACTAGCAGGTTGGGCTGTTACATGTTGGACTTCAAATTCTAACAATGTGTAATTAAAATATTTATTATTTTATTAGATATTTAGTCTGATTTTGTTGTTGTGGAGGGAAGAAATCCAACTTGAGCTTCCTACTTTGAGTATGATATATGGTATATGATATATGATATGCTATACACAAGCATCAATTGTAAATGTTCAAAAATGATAAATGTGAAAACAAGAAATTCAACTGTATCTGTTCAAGGAGTAATTTCTTGAAATTCAACAGGAAACATACAGAAGGTTAGCTGATAGACAGCAGGAAGCTATTGTTTACCTGGTTTAGTATTGAATGTACTAAATACTTCTAAATCTGGACTTTTACGTCTGGATTTTCTTTCTTCTGCTGATTAACTTTTTCATATGAAGGTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAAGTAAGAAACTCTATGATTAGGTTATCCTCTTGCAGTGTTACATATCAAGTCCATTTGTAATGCTCAAATTCTTCTTCAGGGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCAT</genome_strand>
        <mrna_strand>CCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCTGCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCGGTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTGATGAAAAGAAGAGGAAATTGATAGTTACATTTGGTTCAAACCTAATTAAGCTATTTCTAGCTCAGCCGCCTCCAACTCTCTATCTCAATTTCCATTGGTCGGTCTGCTTTCCAGAACAAATCCTTGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACACAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAA...............................................................................GGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGCTCTACCAGATTGAGTTTGGTGACAAGAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366233" ref_strand="+" ref_description="SGN-E366233 [cLPT-1-C20]">
      <seq>agaatagattgaagcacgtactgagacataaaaggcgttttacaatgaggtgtaaggttccttcgctggtagatttatgtgttcagacagcagtagataatttgagataccttggggatgttggtgaaacagacacttatctactagagcgcattttgcctcactgttctcttgaacaattgacacatgtggagaattcgacagaaggaagagatctcagtcaagtgactgatagactttggaagaggttttaccagattgagtttggtgacaagagcatcaatcaggtggttgagcgaatgaagcaagtgaaagtaacatttaaatggaaacagttatatgaggcgaagacacaggaaatggaggaaactcaacaaagatcatttgaaagaatcaaggaattgtaccaaaacgaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="17111" stop="18348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17411" g_stop="17616" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17617" i_stop="17695" i_length="79">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17696" g_stop="17833" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="344" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17834" i_stop="17971" i_length="138">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17972" g_stop="18048" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="421" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E366233" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17411" e_stop="17616"/>
          <exon e_start="17696" e_stop="17833"/>
          <exon e_start="17972" e_stop="18048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAAGTAAGAAACTCTATGATTAGGTTATCCTCTTGCAGTGTTACATATCAAGTCCATTTGTAATGCTCAAATTCTTCTTCAGGGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAGGTGATTTATCATATCATATTTTGTTTTTACTCCCTTATTATGATTTATGATATATGTTTAGTATTGAATCACATCTTCCTCTTATTGTTGTTACCAAATCATTCGACATTACAAAAGGGTATATCAATTTACTTGCAGGCGAAGACACAGGAAATGGAGGAAACTCAACAAAGATCATTTGAAAGAATCAAGGAATTGTACCAAAACGAAAATGC</genome_strand>
        <mrna_strand>AGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCAGACAGCAGTAGATAATTTGAGATACCTTGGGGATGTTGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAA...............................................................................GGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAG..........................................................................................................................................GCGAAGACACAGGAAATGGAGGAAACTCAACAAAGATCATTTGAAAGAATCAAGGAATTGTACCAAAACGAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731058" ref_strand="+" ref_description="SGN-E731058 [LA26AB01]">
      <seq>accagattgagtttggtgacaagagcatcaatcaggtggttgagcgaatgaagcaagtgaaagtaacatttaaatggaaacagttatatgaggcgaagacacaggaaatggaggaaactcaacaaagatcatttgaaagaatcaaggaattgtaccaaaacgaaaatgccaaacggcaaagccgacaagttcaagtctgcacaaaggttcccccttctagcaataaaagaagcttttatggtagtggacttggtagcaattttgggaacacaaagagtccgttgatgaagaaggcaaaaatagagtttgtcaacagtcgagaagtaaagaatttagctgctatgaagaataagtctgtgcaaagaaatcatagccaagtttcttctattaagaaaccaggtagttttgtttcttctcaagaaagaggcagaggatatgagcctgacaccacagctaggcgtggttcctccacatatcctgacaccgcagctaagcgtggttcctccacatatcctgacagcgcagctaggcgtggttcctccacatatcatgacaccgcagctaggcatggttcctccacatatcctgacgctgcagctaggcgtggttcctccacctatcctgacaccgcagcgaggcgtgttccctccacatatcctgataccacaactaggcttggttcctcccccatggcttcgtcagcaagatcgaaatttactagccggtaggagagaagttaggctggcattttatgtatcaaagctggctgttgaaaggaaatgctgagcggtgtgtcttccgctacatgaaagcgcagttgtgtaaattctataaaacgcctgaaagtgcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="17442" stop="20073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17742" g_stop="17833" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17834" i_stop="17971" i_length="138">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17972" g_stop="18050" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="171" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18051" i_stop="18575" i_length="525">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18576" g_stop="18644" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="240" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18645" i_stop="18750" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18751" g_stop="18826" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="316" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18827" i_stop="19158" i_length="332">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19159" g_stop="19215" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="373" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19216" i_stop="19292" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.552" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19293" g_stop="19773" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="854" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E731058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17742" e_stop="17833"/>
          <exon e_start="17972" e_stop="18050"/>
          <exon e_start="18576" e_stop="18644"/>
          <exon e_start="18751" e_stop="18826"/>
          <exon e_start="19159" e_stop="19215"/>
          <exon e_start="19293" e_stop="19773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAGGTGATTTATCATATCATATTTTGTTTTTACTCCCTTATTATGATTTATGATATATGTTTAGTATTGAATCACATCTTCCTCTTATTGTTGTTACCAAATCATTCGACATTACAAAAGGGTATATCAATTTACTTGCAGGCGAAGACACAGGAAATGGAGGAAACTCAACAAAGATCATTTGAAAGAATCAAGGAATTGTACCAAAACGAAAATGCCAGTATGTGCTTTACTTCTGTTTCTTTGTTCTTTAATTTGTATTCCCAGTGTGGTACCATCCTCTAGTTTTAGTTGAGGCCATAATAAGCTGTCATATATATTCAGATGTTGATCTTGACTAATTAGCCTGTTTCCTTTAACAACAATGGGAAATTTTCCAATTACCTCTTAAAGAACTATGTTGGGACTTGTAAGAGTGTGTTACAGAATTCAGATCAGCTAGGGAGTTCCAAAAATCCTGCTCAGAAAATTTTATTTGGTCTTTTATGGTGATAGGTTGTAGATATGTTTTTTCTTGAGCCGAGGGTCTATTGTAACCTCTCTACCTTCCGAGGTAAGGGTAAGACCTGGTTACACACTACCCACTCCACACCCCACTTATGGATTACCTTGAGTATGTTGTTGTGTCGTCATGATCATACTTGACTTTATCTAGTTCTTGAAACTTGTTTAATTTCTCTTTTTATGGAAATATGTTGTGAGTTACCATTACTATTGATATTTAATCTTTTTTATTTGTGTGTAGAACGGCAAAGCCGACAAGTTCAAGTCTGCACAAAGGTTCCCCCTTCTAGCAATAAAAGAAGCTTTTATGGTAAGCTTCATGTTTTCTTTATATACCTTTTCCTGTCAAACTAAACATATTATGTTAATTTAGAATGCGAGGTATTTTTGTTCCTGAATAAGAAGTTAACTTGTAGGTAGTGGACTTGGTAGCAATTTTGGGAACACAAAGAGTCCGTTGATGAAGAAGGCAAAAATAGAGTTTGTCAACAGGTAAGTTTGGCCTCCATTAGAACAATTACATGGCTTAAACATTATTTTATTCATGCAAAAGCTCTCTGTTCCCCACTCCGTACTGGATGGTCTTTCCCAGTGTTTGTGCTTGTGTTGTTAAACCTGTCCTCAACTGTCACTACCTTCATGGGCATAGATCGAATGTGGATTCTTGGTATATTCTGTTTGATTGGAAAATTGTGCTAAGATATTTTAACAATGCTAGTTCTACTAACTAAAGAAAACAGCTGTCTCTGTATTATATTTCTTGTGTTATCTGCGCTATTTTCTATTTTCATATTGATCACTCTCTCTTGTGTTGTTTCTCACAGTCGAGAAGTAAAGAATTTAGCTGCTATGAAGAATAAGTCTGTGCAAAGAAATCATAGGTAAAGACATACTTGCAGCTGTTTATACTTGACCATAATCCATTTTATTCTTATCTTATCTTCTCTTTTGTTCCCAGCCAAGTTTCTTCTATTAAGAAACCAGGTAGTTTTGTTTCTTCTCAAGAAAGAGGCAGAGGATATGAGCCTGACACCACAGCTAGGCGTGGTTCCTCCACATATCCTGACACCGCAGCTAAGCGTGGTTCCTCCACATATCCTGACAGCGCAGCTAGGCGTGGTTCCTCCACATATCATGACACCGCAGCTAGGCATGGTTCCTCCACATATCCTGACGCTGCAGCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTC</genome_strand>
        <mrna_strand>ACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAG..........................................................................................................................................GCGAAGACACAGGAAATGGAGGAAACTCAACAAAGATCATTTGAAAGAATCAAGGAATTGTACCAAAACGAAAATGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCAAAGCCGACAAGTTCAAGTCTGCACAAAGGTTCCCCCTTCTAGCAATAAAAGAAGCTTTTATG..........................................................................................................GTAGTGGACTTGGTAGCAATTTTGGGAACACAAAGAGTCCGTTGATGAAGAAGGCAAAAATAGAGTTTGTCAACAG............................................................................................................................................................................................................................................................................................................................................TCGAGAAGTAAAGAATTTAGCTGCTATGAAGAATAAGTCTGTGCAAAGAAATCATAG.............................................................................CCAAGTTTCTTCTATTAAGAAACCAGGTAGTTTTGTTTCTTCTCAAGAAAGAGGCAGAGGATATGAGCCTGACACCACAGCTAGGCGTGGTTCCTCCACATATCCTGACACCGCAGCTAAGCGTGGTTCCTCCACATATCCTGACAGCGCAGCTAGGCGTGGTTCCTCCACATATCATGACACCGCAGCTAGGCATGGTTCCTCCACATATCCTGACGCTGCAGCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371184" ref_strand="+" ref_description="SGN-E371184 [TUS-28-D7]">
      <seq>aagaaggcaaaaatagagtttgtcaacagtcgagaagtaaagaatttagctgctatgaagaataagtctgtgcaaagaaatcatagccaagtttcttctattaagaaaccaggtagttttgtttcttctcaagaaagaggcagaggatatgagcctgacaccacagctaggcgtggttcctccacatatcctgacaccgcagctaagcgtggttcctccacatatcctgacagcgcagctaggcgtggttcctccacatatcatgacaccgcagctaggcatggttcctccacatatcctgacgctgcagctaggcgtggttcctccacctatcctgacaccgcagcgaggcgtgttccctccacatatcctgataccacaactaggcttggttcctcccccatggcttcgtcagcaagatcgaaatttactagccggtaggagagaagttaggctggcattttatgtatcaaagctggctgttgaaaggaaatgctgagcggtgtgtcttccgctacatgaaagcgcagttgtgtaaattctataaaacgcctgaaagtgcaactctgcaattttcgtaaaacgtttggcgtgctccgtatatcatacttaacattatgttcaatccatgattctgcaaatagtgctcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="18498" stop="20159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18798" g_stop="18826" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18827" i_stop="19158" i_length="332">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19159" g_stop="19215" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="86" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19216" i_stop="19292" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.552" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19293" g_stop="19859" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="653" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E371184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18798" e_stop="18826"/>
          <exon e_start="19159" e_stop="19215"/>
          <exon e_start="19293" e_stop="19859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGGCAAAAATAGAGTTTGTCAACAGGTAAGTTTGGCCTCCATTAGAACAATTACATGGCTTAAACATTATTTTATTCATGCAAAAGCTCTCTGTTCCCCACTCCGTACTGGATGGTCTTTCCCAGTGTTTGTGCTTGTGTTGTTAAACCTGTCCTCAACTGTCACTACCTTCATGGGCATAGATCGAATGTGGATTCTTGGTATATTCTGTTTGATTGGAAAATTGTGCTAAGATATTTTAACAATGCTAGTTCTACTAACTAAAGAAAACAGCTGTCTCTGTATTATATTTCTTGTGTTATCTGCGCTATTTTCTATTTTCATATTGATCACTCTCTCTTGTGTTGTTTCTCACAGTCGAGAAGTAAAGAATTTAGCTGCTATGAAGAATAAGTCTGTGCAAAGAAATCATAGGTAAAGACATACTTGCAGCTGTTTATACTTGACCATAATCCATTTTATTCTTATCTTATCTTCTCTTTTGTTCCCAGCCAAGTTTCTTCTATTAAGAAACCAGGTAGTTTTGTTTCTTCTCAAGAAAGAGGCAGAGGATATGAGCCTGACACCACAGCTAGGCGTGGTTCCTCCACATATCCTGACACCGCAGCTAAGCGTGGTTCCTCCACATATCCTGACAGCGCAGCTAGGCGTGGTTCCTCCACATATCATGACACCGCAGCTAGGCATGGTTCCTCCACATATCCTGACGCTGCAGCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGG</genome_strand>
        <mrna_strand>AAGAAGGCAAAAATAGAGTTTGTCAACAG............................................................................................................................................................................................................................................................................................................................................TCGAGAAGTAAAGAATTTAGCTGCTATGAAGAATAAGTCTGTGCAAAGAAATCATAG.............................................................................CCAAGTTTCTTCTATTAAGAAACCAGGTAGTTTTGTTTCTTCTCAAGAAAGAGGCAGAGGATATGAGCCTGACACCACAGCTAGGCGTGGTTCCTCCACATATCCTGACACCGCAGCTAAGCGTGGTTCCTCCACATATCCTGACAGCGCAGCTAGGCGTGGTTCCTCCACATATCATGACACCGCAGCTAGGCATGGTTCCTCCACATATCCTGACGCTGCAGCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270711" ref_strand="+" ref_description="SGN-E270711 [cLEM-6-F19]">
      <seq>aagaaggcaaaaatagagtttgtcaacagtcgagaaggaaagaatttagctgctatgaagaataagtctgtgcaaagaaatcatagccaagtttcttctattaagaaaccaggtagttttgtttcttctcaagaaagaggcagaggatatgagcctgacaccacagctaggcgtggttcctccacatatcctgacaccgcagctaagcgtggttcctccacatatcctgacagcgcagctaggcgtggttcctccacatatcatgacaccgcagctaggcatggttcctccacatatcctgacgctgcagctaggcgtggttcctccacctatcctgacaccgcagcgaggcgtgttccctccacatatcctgataccacaactaggcttggttcctcccccatggcttcgtcagcaagatcgaaatttactagccggtaggagagaagttaggctggcattttatgtatcaaagctggctgttgaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="18498" stop="19996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18798" g_stop="18826" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18827" i_stop="19158" i_length="332">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19159" g_stop="19215" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="86" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19216" i_stop="19292" i_length="77">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.552" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19293" g_stop="19696" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="490" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E270711" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18798" e_stop="18826"/>
          <exon e_start="19159" e_stop="19215"/>
          <exon e_start="19293" e_stop="19696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGGCAAAAATAGAGTTTGTCAACAGGTAAGTTTGGCCTCCATTAGAACAATTACATGGCTTAAACATTATTTTATTCATGCAAAAGCTCTCTGTTCCCCACTCCGTACTGGATGGTCTTTCCCAGTGTTTGTGCTTGTGTTGTTAAACCTGTCCTCAACTGTCACTACCTTCATGGGCATAGATCGAATGTGGATTCTTGGTATATTCTGTTTGATTGGAAAATTGTGCTAAGATATTTTAACAATGCTAGTTCTACTAACTAAAGAAAACAGCTGTCTCTGTATTATATTTCTTGTGTTATCTGCGCTATTTTCTATTTTCATATTGATCACTCTCTCTTGTGTTGTTTCTCACAGTCGAGAAGTAAAGAATTTAGCTGCTATGAAGAATAAGTCTGTGCAAAGAAATCATAGGTAAAGACATACTTGCAGCTGTTTATACTTGACCATAATCCATTTTATTCTTATCTTATCTTCTCTTTTGTTCCCAGCCAAGTTTCTTCTATTAAGAAACCAGGTAGTTTTGTTTCTTCTCAAGAAAGAGGCAGAGGATATGAGCCTGACACCACAGCTAGGCGTGGTTCCTCCACATATCCTGACACCGCAGCTAAGCGTGGTTCCTCCACATATCCTGACAGCGCAGCTAGGCGTGGTTCCTCCACATATCATGACACCGCAGCTAGGCATGGTTCCTCCACATATCCTGACGCTGCAGCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGG</genome_strand>
        <mrna_strand>AAGAAGGCAAAAATAGAGTTTGTCAACAG............................................................................................................................................................................................................................................................................................................................................TCGAGAAGGAAAGAATTTAGCTGCTATGAAGAATAAGTCTGTGCAAAGAAATCATAG.............................................................................CCAAGTTTCTTCTATTAAGAAACCAGGTAGTTTTGTTTCTTCTCAAGAAAGAGGCAGAGGATATGAGCCTGACACCACAGCTAGGCGTGGTTCCTCCACATATCCTGACACCGCAGCTAAGCGTGGTTCCTCCACATATCCTGACAGCGCAGCTAGGCGTGGTTCCTCCACATATCATGACACCGCAGCTAGGCATGGTTCCTCCACATATCCTGACGCTGCAGCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371183" ref_strand="+" ref_description="SGN-E371183 [TUS-28-D7](-)">
      <seq>gacaccgcagctaagcgtggttcctccacatatcctgacagcgcagctaggcgtggttcctccacatatcatgacaccgcagctaggcatggttcctccacatatcctgacgctgcagctaggcgtggttcctccacctatcctgacaccgcagcgaggcgtgttccctccacatatcctgataccacaactaggcttggttcctcccccatggcttcgtcagcaagatcgaaatttactagccggtaggagaaaagttaggctggcattttatgtatcaaagctggctgttgaaaggaaatgctgagcggtgtgtcttccgctacatgaaagcgcagttgtgtaaattctataaaacgcctgaaagtgcaactctgcaattttcgtaaaacgtttggcgtgctccgtatatcatacttaacattatgttcaatccatgattctgcaaatagtgctcttggatttgttgttaaggtggatattcggttttgtaaacaacgctttggatgttataatatattggtctattagataatgatacaaatataatccatttttggacattattcccttatacttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="19099" stop="20291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19399" g_stop="19978" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="605"/>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E371183" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19399" e_stop="19978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACCGCAGCTAAGCGTGGTTCCTCCACATATCCTGACAGCGCAGCTAGGCGTGGTTCCTCCACATATCATGACACCGCAGCTAGGCATGGTTCCTCCACATATCCTGACGCTGCAGCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAATATAATCCATTTTTGGACATTATTACATTATACTTA</genome_strand>
        <mrna_strand>GACACCGCAGCTAAGCGTGGTTCCTCCACATATCCTGACAGCGCAGCTAGGCGTGGTTCCTCCACATATCATGACACCGCAGCTAGGCATGGTTCCTCCACATATCCTGACGCTGCAGCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAAAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAATATAATCCATTTTTGGACATTATTCCCTTATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235049" ref_strand="+" ref_description="SGN-E235049 [cLEL-6-N19](-)">
      <seq>gacgctgcagctaggcgtggttcctcccgactatcctgacaccgcagcgaggcgtgttcccctcccgcaatcctgataccacaaactaggcttggttcctcccccatggcttcgtcagcaagatcgaaatttactagccggtaggagagaagttaggctggcattttatgtatcaaagctggctgttgaaaggaaatgctgagcggtgtgtcttccgctacatgaaagcgcagttgtgtaaattctataaaacgcctgaaagtgcaactctgcaattttcgtaaaacgtttggcgtgctccgtatatcatacttaacattatgttcaatccatgattctgcaaatagtgctcttggatttgttgttaaggtggatattcggttttgtaaacaacgctttggatgttataatatattggtctattagataatgatacaaatataatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="19207" stop="20251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19507" g_stop="19950" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="462"/>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E235049" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19507" e_stop="19950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCTGCAGCTAGGCGTGGTTCCT-CCACCTATCCTGACACCGCAGCGAGGCGTGTT-CCCTCCACATATCCTGATACCAC-AACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAATATAATCC</genome_strand>
        <mrna_strand>GACGCTGCAGCTAGGCGTGGTTCCTCCCGACTATCCTGACACCGCAGCGAGGCGTGTTCCCCTCCCGCAATCCTGATACCACAAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAATATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234761" ref_strand="+" ref_description="SGN-E234761 [cLEL-6-N19](-)">
      <seq>gctaggcgtggttcctccactatcctgacaccgcagcgaggcgtgttccctccacatatcctgataccacaactaggcttggttcctcccccatggcttcgtcagcaagatcgaaatttactagccggtaggagagaagttaggctggcattttatgtatcaaagctggctgttgaaaggaaatgctgagcggtgtgtcttccgctacatgaaagcgcagttgtgtaaattctataaaacgcctgaaagtgcaactctgcaattttcgtaaaacgtttggcgtgctccgtatatcatacttaacattatgttcaatccatgattctgcaaatagtgctcttggatttgttgttaaggtggatattcggttttgtaaacaacgctttggatgttataatatattggtctattagataatgatacaaatataatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="19216" stop="20251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19516" g_stop="19950" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="449"/>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E234761" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19516" e_stop="19950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAATATAATCC</genome_strand>
        <mrna_strand>GCTAGGCGTGGTTCCTCCA-CTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAATATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236921" ref_strand="+" ref_description="SGN-E236921 [cLEL-7-F3](-)">
      <seq>gaggcgtgttccctccacatatcctataccacaactaggctggttcctccnncccatggcttcgtcagcaagatcgaaatttactagccggtaggagagaagttaggctggcattttatgtatcaaagctggctgttgaaaggaaatgctgagcggtgtgtcttccgctacatgaaagcgcnagttgtgtaaattctataaaacgcctgaaagtgcaactctgcaattttcgtaaaacgtttggcgtgctccgtatatcatacttaacattatgttcaatccatgattctgcaaatagtgctcttggatttgttgttaaggtggatattcggttttgtaaacaacgctttggatgttataatatattggtctattagataatgatacaaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="19254" stop="20247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19554" g_stop="19943" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="408"/>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E236921" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19554" e_stop="19943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCC--CCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGC-AGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAAT</genome_strand>
        <mrna_strand>GAGGCGTGTTCCCTCCACATATCCT-ATACCACAACTAGGC-TGGTTCCTCCNNCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCNAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236796" ref_strand="+" ref_description="SGN-E236796 [cLEL-7-F3](-)">
      <seq>atcctgataccacaactagcttggttcctcccccatggcttcgtcagcaagatcgaaatttactagccggtaggagagaagttaggctggcattttatgtatcaaagctggctgttgaaaggaaatgctgagcggtgtgtcttccgctacatgaaagcgcagttgtgtaaattctataaaacgcctgaaagtgcaactctgcaattttcgtaaaacgtttggcgtgctccgtatatcatacttaacattatgttcaatccatgattctgcaaatagtgctcttggatttgttgttaaggtggatattcggttttgtaaacaacgctttggatgttataatatattggtctattagataatgatcccaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="19274" stop="20247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19574" g_stop="19943" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="386"/>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E236796" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19574" e_stop="19943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAAT</genome_strand>
        <mrna_strand>ATCCTGATACCACAACTA-GCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATCCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713437" ref_strand="+" ref_description="SGN-E713437 [FB08CE07]">
      <seq>aggatttcccacggagttctttccagttttatttgcaatccctcgcatggctggctacttagcgcattggcgtgagtcccttgacgatcctgataccaagataatgagaccagcacaggtgtacactggtgtatggttgcgtcactatgtgcctctccgaggtcgatcaccttcaaccgagacggataagttcggtcaggtatcagtctccaacgccaccaggcggaggttagctggttcgggtgattagacttggttcgtagtttcagacgttacatcaggaaaatgtagatgaatagaacatcaagctcttgtttaggtttaccaccaatggagatgctctgttttcttcttaagcttgcatgtaataataataatgtactcagaattcaaattttctgatgttcggttagaattttgaattatgggttgtactttatttttgaaatgtacgaattggaaatgaaattcagtacaatgaatttacgaatatatgaaaatttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="21227" stop="20043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20927" g_stop="20810" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20809" i_stop="20733" i_length="77">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20732" g_stop="20335" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="516" r_length="398" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E713437" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20927" e_stop="20810"/>
          <exon e_start="20732" e_stop="20335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTCCCACGGAGTTCTTTCCAGTTTTATTTGCAATCCCTCGCATGGCTGGCTACTTAGCGCATTGGCGTGAGTCCCTTGACGATCCTGATACCAAGATAATGAGACCAGCACAGGTAATGTATAACTTGGTCCCTTTTGCCTATATATCATAGGTAATTCTGTTTAGATGATATTCATTCTCTCCTTTCAGGTGTACACTGGTGTATGGTTGCGTCACTATGTGCCTCTCCGAGGTCGATCACCTTCAACCGAGACGGATAAGTTCGGTCAGGTATCAGTCTCCAACGCCACCAGGCGGAGGTTAGCTGGTTCGGGTGATTAGACTTGGTTCGTAGTTTCAGACGTTACATCAGGAAAATGTAGATGAATAGAACATCAAGCTCTTGTTTAGGTTTACCACCAATGGAGATGCTCTGTTTTCTTCTTAAGCTTGCATGTAATAATAATAATGTACTCAGAATTCAAATTTTCTGATGTTCGGTTAGAATTTTGAATTATGGGTTGTACTTTATTTTTGAAATGTACGAATTGGAAATGAAATTCAGTACAATGAATTTACGAATATATGAAAATTTGAAAATTTTTATA</genome_strand>
        <mrna_strand>AGGATTTCCCACGGAGTTCTTTCCAGTTTTATTTGCAATCCCTCGCATGGCTGGCTACTTAGCGCATTGGCGTGAGTCCCTTGACGATCCTGATACCAAGATAATGAGACCAGCACAG.............................................................................GTGTACACTGGTGTATGGTTGCGTCACTATGTGCCTCTCCGAGGTCGATCACCTTCAACCGAGACGGATAAGTTCGGTCAGGTATCAGTCTCCAACGCCACCAGGCGGAGGTTAGCTGGTTCGGGTGATTAGACTTGGTTCGTAGTTTCAGACGTTACATCAGGAAAATGTAGATGAATAGAACATCAAGCTCTTGTTTAGGTTTACCACCAATGGAGATGCTCTGTTTTCTTCTTAAGCTTGCATGTAATAATAATAATGTACTCAGAATTCAAATTTTCTGATGTTCGGTTAGAATTTTGAATTATGGGTTGTACTTTATTTTTGAAATGTACGAATTGGAAATGAAATTCAGTACAATGAATTTACGAATATATGAAAATTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263618" ref_strand="+" ref_description="SGN-E263618 [cLEG-60-H22]">
      <seq>ccctgccgtgtcgccgccgcctaatctgaaaggcgccttgacaatcattgatgataggaccggtaagaagtatcaggttccggttaccgaggaaggaactgttaaagctaccgactttaagaaaatatctactggatacaatgataagggtctcaagctttatgatccgggctatctcaacactgcacccgttcgttcatcaatatgttacatagatggtgatgcagggattctcaggtatcgaggttacccgattgaagagttggctgagagaagttccttcttagaagtggcttatcttttaatgtatggtaatttaccatctgagaaccaattatcagactgggagtttgcagtttcacatcattcagcagttcctcagggagttttggatatcatacagtcaatgcctcatgatgctcacccgatgggtgttcttgttagtgctatgagcaccctatctgtctttcatcctgatgccaatccagctcttaggggccaagatatatacaattcaaaacaagtgagggataaacaaatagttcgcatccttggagaggcacctgtaattgctgcagctgcctacttgaggatggctggaagaccacctgtccttccgtccaacaacctttcttatgcagagaacttcttgtacatgctagattcattaggtaataggtcttacaaaccgaccctcgacttgctcgtgtagtggacattctctttattttacacgcggagcatgaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="28853" stop="21516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28552" g_stop="28429" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28428" i_stop="28329" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28328" g_stop="28148" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28147" i_stop="27921" i_length="227">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27920" g_stop="27835" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="391" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27834" i_stop="27322" i_length="513">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27321" g_stop="27217" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="496" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27216" i_stop="22430" i_length="4787">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22429" g_stop="22367" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="559" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22366" i_stop="22211" i_length="156">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22210" g_stop="22101" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="669" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22100" i_stop="21899" i_length="202">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21898" g_stop="21816" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="751" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E263618" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28552" e_stop="28429"/>
          <exon e_start="28328" e_stop="28148"/>
          <exon e_start="27920" e_stop="27835"/>
          <exon e_start="27321" e_stop="27217"/>
          <exon e_start="22429" e_stop="22367"/>
          <exon e_start="22210" e_stop="22101"/>
          <exon e_start="21898" e_stop="21816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAAGTAAGCTTCTATGCTTGTTTGCGTCGTGTAGTTAGTACTATTTGTTTTGATTATTATTTTATTTTTTTTATATATACTGTAATTGTTATTTGTTATATAGATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAAGTAAGTGTTAATAATGAAATTTACTTCATCAGATTCTTAAGCCTCACTTCTAATGCATCATTGGATTTCTTCAACTGCTTTTTGTAAATACCAGTCAATGTTCTTGTTATCTTGAAATGAGTTCGTTGCTCTGAAGGTTCTGCTTCAGAAGCTGGTTTATGTTACTTCACAGTTTTGATTCATAAGATGGTTCATATTTTATCAATGGCGTTACGTGAATTATGCAGTGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTGGTACGATCATATCTTAATTTTCGAAGAAAGCTTTATTTTGTGTGTTCCACTCTCAAGCGCTATTCATTATCTTAGGAGACAGGCTACAACCTCTTTGTTGTGCATTTCTCACTATACTTATCTTAAAAAGTGTTGCCCCTTGACGCATGAAGCTTCTGAAAAACAAGGGCATGTACATATAAGACATGCTTGTCTATTCGCCCCATCTGGTAGCTTGCTGATTTCAAGCATTGTTGTTCCAGGCGAGTCAAGTGGCTAAAATAGATTATTTCACACCTTTGTCCATCTGAACCTAGCTCTAGAGAGCATGATTATTTTGCTATATATGAACTGGAATGTGATGTTATGCTTATATATTTTTCTATATATGAACTGGAATGTTAGCATTATGAGATATTATGCTTATATATTTTTCCAGATGTTCAGACCACATTTCATGTGTTTCCGTGCGGATCATTTCGATGCGAGTGGTTTTGAGTGTAGCTGAGATAATTGTGTGATCTTGTGTTGCAGGATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGCCAATCCAGCTCTTAGGGTAAGCAAATTTTGAAGTTCCCAACTTTTGATCCCTTCTTTGCCCCTCTTATGTGATGATGCTGTATTACACCGGCACATTCCGCATATCTCAGGGGACAATATATTTGTTTGAGCAAAATCTTTTTTTTTTTGCTTCATGTGTTCATTGCATTGGATGTTCTTTTTAGTGCTATAGTGCTTTTTCTGTATTTCATTATGATGCCAATCCAGTTCTTAGTGCTATAGTGCTTTTTCTGTATTTCATTATGATGCCAATCCAGTTCTTAGGGTAAGTAAAATTTTGAAGCCCCATGCTTTTGTACCGCCTTTTCCTCTTTATTGTGATGTTGTATTTCAGTGGCTTATTCCGCATATATGTGAATCTGCAGGCGATGCATTTGCTTGAGCAAAATATGTTTTTGCTTTACATATATTCATTGCATTGAATGTTCCTTCTCCTCGTTTTGATTTGTTAGGATAACTTTTATTGGTTCTATTGAATGTTTAAAATAAGGAAGGTGAAGCCATATCCTGTAGACAAATGATCATTTTCCATATGATAGTTTAATTTGCTCCTTCTTAGCCCCTTGACCGTCCTTTCTTAATGACGGTCTTACTCTTTGGTAAATTTCTGTTTCTTATGACACAGTTTGACACTAGTGATCTCTTCTTGTCCTGCCTCTTGTTTGGCCAGACACGTAAGGTTCTTTACAAATAGGAGACTGAAACAGTCTTTTTTTCCTGTTCAATTCTTATCTATGGCTTCAATTACTTCTGCTGACCTTCTTAGGGGTCCATTTTCATGGAACAAAGGGTGGTGGGGACCGGGTGTTGAGATTCTTTTTTAGCCCTGAACTTGTCGTTAAGACGCTATGATTCTCAACTATGGTGGAGGGGGACAAATTGATTAGTGCTACAGATACTGGTTCATCACAACTAAGGGTGCGATGGAGAACAAGTTGACTCTGGTTCAGCATTTGCTCTTATTTTGTTGCATGAGTTGGACTTATCTCGAAGTAGAGTCTATAGATAAATTCGGTTTAGCACTTTGTCTTTGCTTGGTGACCAATAATAGGCAGGCACCAAGCATTGGAATTACAAGCTTTCCTACTACTGCGATTACGTATCACGGTCTGCTATAAACCCGGCTTCGCAACCTGAAGGATGGCTTGCCAAAGTCAGTCTAAGCAGTAAATTGGATCATAGTAGCAGACTTTTCCTGACAGACATGGGCTCTGGTGGCACACTCTGTCCAATACACCCTCAGATTTCGGTCTACTCTACTAACAGATTTACATGCTTTGTTATGTAAGAAACATCGGAAATTATTTTAGTTGCAACTAGCTAACTTGATAAAATTTGTCACATCAAGCAGCACTTGCCTAGTGCTTCTTTACTCCGTCTAAGAGATCAGGCTTTTCATTCATTCAAGAGAGAAGAAGAAGAGCAGAAGTGTGTAGCAAACAATCATTTTATTAATGCTAAAAGATGTAAAAGCTCTTAAGATAAAGATTCTTAATTTTTGAAATATCTACTAACTATTGGTCCTACTCCTAAAGTTTAAGACCAACCTAAGAATAAAAAATATTAGGCTTAAGTTATCGACAGCCCTTTAAAGTTATTCGCATAATTCACTTAGACATCTCAACTAAGTCTATTACCTATTAGACACTTTAATATTAAAGAATATGTATTCATTGAACATATAACAAAAACTCTCTTTAAAATTATTTTGCGTGTAATTCACGCGCATCATCTTAAAATAATGACAAATAAAATTATGACACATTGCACATGGTTCCAGTCTAGCAATAAAATATAATTTTTTATTTTAAAAAATGAAAAATATTTTTCAGCCTTTACTTATTAATCACAAAAATATTTAAAAAGAAAATCTCCCCCACCCCCACCTAACCCTTTACCTTTCTTCTTCCTTTTATCATGTGAACCCTGCAGCCACCATGAATTCCTCTCTTGTTAACTAAGATAACAAAAGTAAAAATCCCCCCCTCAAATTCATTCTTCTAGATCGGTTATTCTCGTGAGGAAGAAAGATTGGAAGTATGTTGAATTTTTTAATATCATCTTTAATAAGTTCAATGCGTGGAGATGTTTGTTCAATCGGAGTGATCGGAATAGAGATGGACGAATATCGATCAATTTTTAACTCCAGTGTTCAAAATTTTTCTTCTTTCTCACATATTAAATTAGCAAATTTTTTTCACAAAAAATAAAGAAAAAAAAAGAATGAAAAAAAATGCTAAGAATTTAATATCATTAAAATAGTGGAGAAAGAAGATGACCGTTAATCCATGGCTATGGGTGTGGGTGTGGGTGTGTGGTGCGGTTGGTATGAAGAGATAAATGTGAAACTAATATTATTTTTTAATTATTTAGTTAAATGTATGTCAGCAGTGAAAAAAATAGGTACCATTTAATAAAAAATAAAATTTTGCTCTATTCATGCGTTAAGTAGCAGTGACACGCACTTGTTTCGTCACATTAGCGTTTTGTGTTTAATTGAAAGATATTTTGAAAAATTTAGGTGTTCAATAGGTGTATGTCCTAGTTGAGGTGTCTAAATGAATTATGCAGACAATTGTAAGGGGCTGTCGATAATTTCAGCCAAAATATTATCTTACATGACCATCATTTTAGAAGTAGTAAAGCCCTATTTTGTCCAAAAATAGTAAATCTTTATCTGGGCATGCAATTAATATATGACACTCCATTCAAAAAAGGTCCACTAACATGTGAAGCAGTCTAACAACAACTCACTAACAAAACAATAAACATGTAAAACTATATGTTGTTGGCATGTCACAGCACGAGCAAGCAGGTGTGTGAGCAGCTTGTAGGCACTAGCAAATATGCGGGTAAGCTTCTTTTAAGCATCTTGCAAGCAAGCGAGTATGTTGTTGTTCTGCAAGCAAGCTTCTTTTAAGCATCTTGCAAGCAAGCGAGTATGTTGTTGTTCTGCAAGCAAGTGGTAAATCACTTGTAGGCATTTCTGCAAGTAGGTGGATAAGCAACCTGTGGGAAGATCTGTAAGTAAGTGGATAAGCACCTGTGGGAAGATGGATAGACAAACTAAACTAGGAAGATTTATGGCGGACTTGCACATGTCATCAAGATTATTCGACTGTACGATGTTGAAGATCTTGATAGCAGGCTTGCGTACCCTTCCTCCATTCACCAGTCCACTCCATGTCTGGTGTGGGATCTAAGAAGGTTGATAGAAGGTTTCTTTTCTTGCTCTGTTAAAAATCTTTTGGAGGATTCCTCTTTCATCTAGCCCGATAGGGAAATCCATACTAGACATGGTCTTGGATGGAAGAACGATACGCAAGCCGTCCGTCAAGACCCTCAACAATGTGTAATCTAATAATGCCTGATGACATGTGTAAGAAAGTACCCATTTACCTCTACCTCCATAAAATCTTCCTAGTTAAATGTGCCTACCGTCTTCCTACAAGTTATTTGTGCCTACAAGTAGCTTACCACCTGCTTGTAGAACAACAACAAACTGGTCTGCTTATAAGTTGCCTATAAGGTGCTCACCCACCTACTTGCACATGATGTCCCATGCCAACAACATATTTAGTTTTACGTGTATTTTGTTTTGTTAGGCTTCTTCACATGTTAGTGGGGGTCTGTTTGAACAATAAAGTTTGTCATGTATTTAGTTTTATTGGGATAGAAGAGTTGTAGCCAGGTTAGGAATTTACTATTTTTAGACTGGATAGGGGTTTACTATTGGTGGACCATGGAAGACTTAGGTCTGTCTATATTATCTTCCCTACATAAAGGAGGCCAAGCAATAGTTAGTTAGGGATGACAATGGGGAGCGGTGAGGGCGGGGCGAGATTTTCCTAATGCGGGTTAGGGCGGATTTTACTTTATGCGGGTGGGTTGAAAATTTTTCAAAGGAATTTAATGCGGGTGTGGGGCGGGTTCCTCCCTCCACATTTTGGAGCAAAACAGAGTTGCATTATTTTGCCCTTCAACAATTTTACAATTAACGATCTTCACAGTTTTACAACTTGATTATTATTTTTTTTTTCATCGGGTTGAAATTAAATTTTCTTTTCATTTCAATATTTATGTACCTCACATGGTTGAAATGATATACTAATATTAGTGGAAAACAACAAATATTTCTTTTATATAAAAACAACAGGTAAAATTCAAGATAGTGAATTTTCTTTTTTGTTCCTCGTTTCTTCCTGTCAAGTTCTGGGTTCATAAGCACCCTTTAACTTTGTACAAGTCATATAAATATAATTACAATAAATGTTGAAGTAGTATAATGATCAGAGGAATTGACAAAAAAAAAAGAAAGATAAAAATGACAAAATAAAAAAGAGAGAAAAAATTGCAATATGATACTTCTTCGTGATAATGAAAAAGAATTATGTGGGGTGGGTCCGTGGGGGGTTTATGTTGGGCGGGTTAAAACTAGAATATTTTATTATGTGGGGTGGGGCGGGGTGGGGCGGGTTGGAATGTTTGCCGTTTACGTGGGTTTGCCTCGCAACTGCCCTGCCCCAGTCCGCTCCGTTTGCCATCCCTATAATTAGTAGAGATATTAAAAATTAGGATGTTTTTATCTTATAGCTCGTATATTGTTTAGTGTGATGAATAAAATGATTGCTGGCTAAATACTTCTCTCTTGAAGGGATGGAAAGTCCACTCCCGTAGTCGGATAAGGAAACACTAGTGAGTGTGCTTGTTGTGATTTCAATGGTGTTGTTCCATGTCCCTCTCCCGCTGCGACTCTGATCATGTGTGTTTATGTTGATGCAGGGCCAAGATATATACAATTCAAAACAAGTGAGGGATAAACAAATAGTTCGCATCCTTGGAAAGGTTATTTCTATTAGCTTTTCACTCAACTGTCTTTGATTGCTTAAACTGCTGAAATAGTCAAATTATGAACTCATGTTCCTTTTTGATGTGTACAGCCTTGACTGTTATCTACAATCATTGCACTAATCCATCCTCTTATTAACTGAATTTTGGCAGGCACCTGTAATTGCTGCAGCTGCCTACTTGAGGATGGCTGGAAGACCACCTGTCCTTCCGTCCAACAACCTTTCTTATGCAGAGAACTTCTTGTACATGCTAGATTCATTGTAAGTTCTATTTCTTAACTTAATTCTCTCTGATATCAAGCTCCAGCTAGAAAGAAAATTTAAGCGATGCCTAAATTGGATAAAAGCAATTATTGTTCCCCCTTTACCCAGGGAGATGTATGACACTAGTGGTCCGTAACATACTTGTTTATTGATATAAGATCTAGCTGGCAAGTTAACAACTTGTTCCATGAACATGCAGAGGTAATAGGTCTTACAAACCGAACCCTCGACTTGCTCGTGTAGTGGACATTCTCTTTATTTTACACGCGGAGCATGAAATGA</genome_strand>
        <mrna_strand>CCCTGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGATAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAA....................................................................................................ATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAA...................................................................................................................................................................................................................................TGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGCCAATCCAGCTCTTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAGATATATACAATTCAAAACAAGTGAGGGATAAACAAATAGTTCGCATCCTTGGAGAG............................................................................................................................................................GCACCTGTAATTGCTGCAGCTGCCTACTTGAGGATGGCTGGAAGACCACCTGTCCTTCCGTCCAACAACCTTTCTTATGCAGAGAACTTCTTGTACATGCTAGATTCATT..........................................................................................................................................................................................................AGGTAATAGGTCTTACAAACCG-ACCCTCGACTTGCTCGTGTAGTGGACATTCTCTTTATTTTACACGCGGAGCATGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372601" ref_strand="+" ref_description="SGN-E372601 [TUS-31-K11]">
      <seq>tgccgtgtcgccgccgcctaatctgaaaggcgccttgacaatcattgatgagaggaccggtaagaagtatcaggttccggttaccgaggaaggaactgttaaagctaccgactttaagaaaatatctactggatacaatgataagggtctcaagctttatgatccgggctatctcaacactgcacccgttcgttcatcaatatgttacatagatggtgatgcagggattctcaggtatcgaggttacccgattgaagagttggctgagagaagttccttcttagaagtggcttatcttttaatgtatggtaatttaccatctgagaaccaattatcagactgggagtttgcagtttcacatcattcagcagttcctcagggagttttggatatcatacagtcaatgcctcatgatgctcacccgatgggtgttcttgttagtgctatgagcaccctatctgtctttcatcctgatgccaatccagctcttaggggccaagatatatacaattcaaaacaagtgagggataaacaaatagttcgcatccttggaaaggcacctgtaattgctgcagctgcctacttgaggatggctggaagaccacctgtccttccgtccaacaacctttcttatgcagagaacttcttgtacatgctagattcattangtaataggtcttacaaaccgaaccctcgacttgctcgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="28849" stop="21556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28549" g_stop="28429" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28428" i_stop="28329" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28328" g_stop="28148" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="302" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28147" i_stop="27921" i_length="227">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27920" g_stop="27835" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="388" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27834" i_stop="27322" i_length="513">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27321" g_stop="27217" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="493" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27216" i_stop="22430" i_length="4787">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22429" g_stop="22367" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="556" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22366" i_stop="22211" i_length="156">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22210" g_stop="22101" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="666" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22100" i_stop="21899" i_length="202">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21898" g_stop="21856" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="709" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E372601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28549" e_stop="28429"/>
          <exon e_start="28328" e_stop="28148"/>
          <exon e_start="27920" e_stop="27835"/>
          <exon e_start="27321" e_stop="27217"/>
          <exon e_start="22429" e_stop="22367"/>
          <exon e_start="22210" e_stop="22101"/>
          <exon e_start="21898" e_stop="21856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAAGTAAGCTTCTATGCTTGTTTGCGTCGTGTAGTTAGTACTATTTGTTTTGATTATTATTTTATTTTTTTTATATATACTGTAATTGTTATTTGTTATATAGATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAAGTAAGTGTTAATAATGAAATTTACTTCATCAGATTCTTAAGCCTCACTTCTAATGCATCATTGGATTTCTTCAACTGCTTTTTGTAAATACCAGTCAATGTTCTTGTTATCTTGAAATGAGTTCGTTGCTCTGAAGGTTCTGCTTCAGAAGCTGGTTTATGTTACTTCACAGTTTTGATTCATAAGATGGTTCATATTTTATCAATGGCGTTACGTGAATTATGCAGTGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTGGTACGATCATATCTTAATTTTCGAAGAAAGCTTTATTTTGTGTGTTCCACTCTCAAGCGCTATTCATTATCTTAGGAGACAGGCTACAACCTCTTTGTTGTGCATTTCTCACTATACTTATCTTAAAAAGTGTTGCCCCTTGACGCATGAAGCTTCTGAAAAACAAGGGCATGTACATATAAGACATGCTTGTCTATTCGCCCCATCTGGTAGCTTGCTGATTTCAAGCATTGTTGTTCCAGGCGAGTCAAGTGGCTAAAATAGATTATTTCACACCTTTGTCCATCTGAACCTAGCTCTAGAGAGCATGATTATTTTGCTATATATGAACTGGAATGTGATGTTATGCTTATATATTTTTCTATATATGAACTGGAATGTTAGCATTATGAGATATTATGCTTATATATTTTTCCAGATGTTCAGACCACATTTCATGTGTTTCCGTGCGGATCATTTCGATGCGAGTGGTTTTGAGTGTAGCTGAGATAATTGTGTGATCTTGTGTTGCAGGATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGCCAATCCAGCTCTTAGGGTAAGCAAATTTTGAAGTTCCCAACTTTTGATCCCTTCTTTGCCCCTCTTATGTGATGATGCTGTATTACACCGGCACATTCCGCATATCTCAGGGGACAATATATTTGTTTGAGCAAAATCTTTTTTTTTTTGCTTCATGTGTTCATTGCATTGGATGTTCTTTTTAGTGCTATAGTGCTTTTTCTGTATTTCATTATGATGCCAATCCAGTTCTTAGTGCTATAGTGCTTTTTCTGTATTTCATTATGATGCCAATCCAGTTCTTAGGGTAAGTAAAATTTTGAAGCCCCATGCTTTTGTACCGCCTTTTCCTCTTTATTGTGATGTTGTATTTCAGTGGCTTATTCCGCATATATGTGAATCTGCAGGCGATGCATTTGCTTGAGCAAAATATGTTTTTGCTTTACATATATTCATTGCATTGAATGTTCCTTCTCCTCGTTTTGATTTGTTAGGATAACTTTTATTGGTTCTATTGAATGTTTAAAATAAGGAAGGTGAAGCCATATCCTGTAGACAAATGATCATTTTCCATATGATAGTTTAATTTGCTCCTTCTTAGCCCCTTGACCGTCCTTTCTTAATGACGGTCTTACTCTTTGGTAAATTTCTGTTTCTTATGACACAGTTTGACACTAGTGATCTCTTCTTGTCCTGCCTCTTGTTTGGCCAGACACGTAAGGTTCTTTACAAATAGGAGACTGAAACAGTCTTTTTTTCCTGTTCAATTCTTATCTATGGCTTCAATTACTTCTGCTGACCTTCTTAGGGGTCCATTTTCATGGAACAAAGGGTGGTGGGGACCGGGTGTTGAGATTCTTTTTTAGCCCTGAACTTGTCGTTAAGACGCTATGATTCTCAACTATGGTGGAGGGGGACAAATTGATTAGTGCTACAGATACTGGTTCATCACAACTAAGGGTGCGATGGAGAACAAGTTGACTCTGGTTCAGCATTTGCTCTTATTTTGTTGCATGAGTTGGACTTATCTCGAAGTAGAGTCTATAGATAAATTCGGTTTAGCACTTTGTCTTTGCTTGGTGACCAATAATAGGCAGGCACCAAGCATTGGAATTACAAGCTTTCCTACTACTGCGATTACGTATCACGGTCTGCTATAAACCCGGCTTCGCAACCTGAAGGATGGCTTGCCAAAGTCAGTCTAAGCAGTAAATTGGATCATAGTAGCAGACTTTTCCTGACAGACATGGGCTCTGGTGGCACACTCTGTCCAATACACCCTCAGATTTCGGTCTACTCTACTAACAGATTTACATGCTTTGTTATGTAAGAAACATCGGAAATTATTTTAGTTGCAACTAGCTAACTTGATAAAATTTGTCACATCAAGCAGCACTTGCCTAGTGCTTCTTTACTCCGTCTAAGAGATCAGGCTTTTCATTCATTCAAGAGAGAAGAAGAAGAGCAGAAGTGTGTAGCAAACAATCATTTTATTAATGCTAAAAGATGTAAAAGCTCTTAAGATAAAGATTCTTAATTTTTGAAATATCTACTAACTATTGGTCCTACTCCTAAAGTTTAAGACCAACCTAAGAATAAAAAATATTAGGCTTAAGTTATCGACAGCCCTTTAAAGTTATTCGCATAATTCACTTAGACATCTCAACTAAGTCTATTACCTATTAGACACTTTAATATTAAAGAATATGTATTCATTGAACATATAACAAAAACTCTCTTTAAAATTATTTTGCGTGTAATTCACGCGCATCATCTTAAAATAATGACAAATAAAATTATGACACATTGCACATGGTTCCAGTCTAGCAATAAAATATAATTTTTTATTTTAAAAAATGAAAAATATTTTTCAGCCTTTACTTATTAATCACAAAAATATTTAAAAAGAAAATCTCCCCCACCCCCACCTAACCCTTTACCTTTCTTCTTCCTTTTATCATGTGAACCCTGCAGCCACCATGAATTCCTCTCTTGTTAACTAAGATAACAAAAGTAAAAATCCCCCCCTCAAATTCATTCTTCTAGATCGGTTATTCTCGTGAGGAAGAAAGATTGGAAGTATGTTGAATTTTTTAATATCATCTTTAATAAGTTCAATGCGTGGAGATGTTTGTTCAATCGGAGTGATCGGAATAGAGATGGACGAATATCGATCAATTTTTAACTCCAGTGTTCAAAATTTTTCTTCTTTCTCACATATTAAATTAGCAAATTTTTTTCACAAAAAATAAAGAAAAAAAAAGAATGAAAAAAAATGCTAAGAATTTAATATCATTAAAATAGTGGAGAAAGAAGATGACCGTTAATCCATGGCTATGGGTGTGGGTGTGGGTGTGTGGTGCGGTTGGTATGAAGAGATAAATGTGAAACTAATATTATTTTTTAATTATTTAGTTAAATGTATGTCAGCAGTGAAAAAAATAGGTACCATTTAATAAAAAATAAAATTTTGCTCTATTCATGCGTTAAGTAGCAGTGACACGCACTTGTTTCGTCACATTAGCGTTTTGTGTTTAATTGAAAGATATTTTGAAAAATTTAGGTGTTCAATAGGTGTATGTCCTAGTTGAGGTGTCTAAATGAATTATGCAGACAATTGTAAGGGGCTGTCGATAATTTCAGCCAAAATATTATCTTACATGACCATCATTTTAGAAGTAGTAAAGCCCTATTTTGTCCAAAAATAGTAAATCTTTATCTGGGCATGCAATTAATATATGACACTCCATTCAAAAAAGGTCCACTAACATGTGAAGCAGTCTAACAACAACTCACTAACAAAACAATAAACATGTAAAACTATATGTTGTTGGCATGTCACAGCACGAGCAAGCAGGTGTGTGAGCAGCTTGTAGGCACTAGCAAATATGCGGGTAAGCTTCTTTTAAGCATCTTGCAAGCAAGCGAGTATGTTGTTGTTCTGCAAGCAAGCTTCTTTTAAGCATCTTGCAAGCAAGCGAGTATGTTGTTGTTCTGCAAGCAAGTGGTAAATCACTTGTAGGCATTTCTGCAAGTAGGTGGATAAGCAACCTGTGGGAAGATCTGTAAGTAAGTGGATAAGCACCTGTGGGAAGATGGATAGACAAACTAAACTAGGAAGATTTATGGCGGACTTGCACATGTCATCAAGATTATTCGACTGTACGATGTTGAAGATCTTGATAGCAGGCTTGCGTACCCTTCCTCCATTCACCAGTCCACTCCATGTCTGGTGTGGGATCTAAGAAGGTTGATAGAAGGTTTCTTTTCTTGCTCTGTTAAAAATCTTTTGGAGGATTCCTCTTTCATCTAGCCCGATAGGGAAATCCATACTAGACATGGTCTTGGATGGAAGAACGATACGCAAGCCGTCCGTCAAGACCCTCAACAATGTGTAATCTAATAATGCCTGATGACATGTGTAAGAAAGTACCCATTTACCTCTACCTCCATAAAATCTTCCTAGTTAAATGTGCCTACCGTCTTCCTACAAGTTATTTGTGCCTACAAGTAGCTTACCACCTGCTTGTAGAACAACAACAAACTGGTCTGCTTATAAGTTGCCTATAAGGTGCTCACCCACCTACTTGCACATGATGTCCCATGCCAACAACATATTTAGTTTTACGTGTATTTTGTTTTGTTAGGCTTCTTCACATGTTAGTGGGGGTCTGTTTGAACAATAAAGTTTGTCATGTATTTAGTTTTATTGGGATAGAAGAGTTGTAGCCAGGTTAGGAATTTACTATTTTTAGACTGGATAGGGGTTTACTATTGGTGGACCATGGAAGACTTAGGTCTGTCTATATTATCTTCCCTACATAAAGGAGGCCAAGCAATAGTTAGTTAGGGATGACAATGGGGAGCGGTGAGGGCGGGGCGAGATTTTCCTAATGCGGGTTAGGGCGGATTTTACTTTATGCGGGTGGGTTGAAAATTTTTCAAAGGAATTTAATGCGGGTGTGGGGCGGGTTCCTCCCTCCACATTTTGGAGCAAAACAGAGTTGCATTATTTTGCCCTTCAACAATTTTACAATTAACGATCTTCACAGTTTTACAACTTGATTATTATTTTTTTTTTCATCGGGTTGAAATTAAATTTTCTTTTCATTTCAATATTTATGTACCTCACATGGTTGAAATGATATACTAATATTAGTGGAAAACAACAAATATTTCTTTTATATAAAAACAACAGGTAAAATTCAAGATAGTGAATTTTCTTTTTTGTTCCTCGTTTCTTCCTGTCAAGTTCTGGGTTCATAAGCACCCTTTAACTTTGTACAAGTCATATAAATATAATTACAATAAATGTTGAAGTAGTATAATGATCAGAGGAATTGACAAAAAAAAAAGAAAGATAAAAATGACAAAATAAAAAAGAGAGAAAAAATTGCAATATGATACTTCTTCGTGATAATGAAAAAGAATTATGTGGGGTGGGTCCGTGGGGGGTTTATGTTGGGCGGGTTAAAACTAGAATATTTTATTATGTGGGGTGGGGCGGGGTGGGGCGGGTTGGAATGTTTGCCGTTTACGTGGGTTTGCCTCGCAACTGCCCTGCCCCAGTCCGCTCCGTTTGCCATCCCTATAATTAGTAGAGATATTAAAAATTAGGATGTTTTTATCTTATAGCTCGTATATTGTTTAGTGTGATGAATAAAATGATTGCTGGCTAAATACTTCTCTCTTGAAGGGATGGAAAGTCCACTCCCGTAGTCGGATAAGGAAACACTAGTGAGTGTGCTTGTTGTGATTTCAATGGTGTTGTTCCATGTCCCTCTCCCGCTGCGACTCTGATCATGTGTGTTTATGTTGATGCAGGGCCAAGATATATACAATTCAAAACAAGTGAGGGATAAACAAATAGTTCGCATCCTTGGAAAGGTTATTTCTATTAGCTTTTCACTCAACTGTCTTTGATTGCTTAAACTGCTGAAATAGTCAAATTATGAACTCATGTTCCTTTTTGATGTGTACAGCCTTGACTGTTATCTACAATCATTGCACTAATCCATCCTCTTATTAACTGAATTTTGGCAGGCACCTGTAATTGCTGCAGCTGCCTACTTGAGGATGGCTGGAAGACCACCTGTCCTTCCGTCCAACAACCTTTCTTATGCAGAGAACTTCTTGTACATGCTAGATTCATTGTAAGTTCTATTTCTTAACTTAATTCTCTCTGATATCAAGCTCCAGCTAGAAAGAAAATTTAAGCGATGCCTAAATTGGATAAAAGCAATTATTGTTCCCCCTTTACCCAGGGAGATGTATGACACTAGTGGTCCGTAACATACTTGTTTATTGATATAAGATCTAGCTGGCAAGTTAACAACTTGTTCCATGAACATGCAGAGGTAATAGGTCTTACAAACCGAACCCTCGACTTGCTCGTGTA</genome_strand>
        <mrna_strand>TGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAA....................................................................................................ATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAA...................................................................................................................................................................................................................................TGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGCCAATCCAGCTCTTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAGATATATACAATTCAAAACAAGTGAGGGATAAACAAATAGTTCGCATCCTTGGAAAG............................................................................................................................................................GCACCTGTAATTGCTGCAGCTGCCTACTTGAGGATGGCTGGAAGACCACCTGTCCTTCCGTCCAACAACCTTTCTTATGCAGAGAACTTCTTGTACATGCTAGATTCATT..........................................................................................................................................................................................................ANGTAATAGGTCTTACAAACCGAACCCTCGACTTGCTCGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373880" ref_strand="+" ref_description="SGN-E373880 [TUS-31-K12]">
      <seq>tgccgtgtcgccgccgcctaatctgaaaggcgccttgacaatcattgatgagaggaccggtaagaagtatcaggttccggttaccgaggaaggaactgttaaagctaccgactttaagaaaatatctactggatacaatgataagggtctcaagctttatgatccgggctatctcaacactgcacccgttcgttcatcaatatgttacatagatggtgatgcagggattctcaggtatcgaggttacccgattgaagagttggctgagagaagttccttcttagaagtggcttatcttttaatgtatggtaatttaccatctgagaaccaattatcagactgggagtttgcagtttcacatcattcagcagttcctcagggagttttggatatcatacagtcaatgcctcatgatgctcacccgatgggtgttcttgttagtgctatgagcaccctatctgtctttcatcctgatgccaatccagctcttaggggccaagatatatacaattcaaaacaagtgagggataaacaaatagttcgcatccttggaaaggcacctgtaattgctgcagctgcctacttgaggatggctggaagaccacctgtccttccgtccaacaacctttcttatgcagagaactttttgtacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="28849" stop="21811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28549" g_stop="28429" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28428" i_stop="28329" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28328" g_stop="28148" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="302" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28147" i_stop="27921" i_length="227">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27920" g_stop="27835" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="388" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27834" i_stop="27322" i_length="513">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27321" g_stop="27217" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="493" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27216" i_stop="22430" i_length="4787">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22429" g_stop="22367" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="556" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22366" i_stop="22211" i_length="156">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22210" g_stop="22111" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="656" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E373880" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28549" e_stop="28429"/>
          <exon e_start="28328" e_stop="28148"/>
          <exon e_start="27920" e_stop="27835"/>
          <exon e_start="27321" e_stop="27217"/>
          <exon e_start="22429" e_stop="22367"/>
          <exon e_start="22210" e_stop="22111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAAGTAAGCTTCTATGCTTGTTTGCGTCGTGTAGTTAGTACTATTTGTTTTGATTATTATTTTATTTTTTTTATATATACTGTAATTGTTATTTGTTATATAGATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAAGTAAGTGTTAATAATGAAATTTACTTCATCAGATTCTTAAGCCTCACTTCTAATGCATCATTGGATTTCTTCAACTGCTTTTTGTAAATACCAGTCAATGTTCTTGTTATCTTGAAATGAGTTCGTTGCTCTGAAGGTTCTGCTTCAGAAGCTGGTTTATGTTACTTCACAGTTTTGATTCATAAGATGGTTCATATTTTATCAATGGCGTTACGTGAATTATGCAGTGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTGGTACGATCATATCTTAATTTTCGAAGAAAGCTTTATTTTGTGTGTTCCACTCTCAAGCGCTATTCATTATCTTAGGAGACAGGCTACAACCTCTTTGTTGTGCATTTCTCACTATACTTATCTTAAAAAGTGTTGCCCCTTGACGCATGAAGCTTCTGAAAAACAAGGGCATGTACATATAAGACATGCTTGTCTATTCGCCCCATCTGGTAGCTTGCTGATTTCAAGCATTGTTGTTCCAGGCGAGTCAAGTGGCTAAAATAGATTATTTCACACCTTTGTCCATCTGAACCTAGCTCTAGAGAGCATGATTATTTTGCTATATATGAACTGGAATGTGATGTTATGCTTATATATTTTTCTATATATGAACTGGAATGTTAGCATTATGAGATATTATGCTTATATATTTTTCCAGATGTTCAGACCACATTTCATGTGTTTCCGTGCGGATCATTTCGATGCGAGTGGTTTTGAGTGTAGCTGAGATAATTGTGTGATCTTGTGTTGCAGGATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGCCAATCCAGCTCTTAGGGTAAGCAAATTTTGAAGTTCCCAACTTTTGATCCCTTCTTTGCCCCTCTTATGTGATGATGCTGTATTACACCGGCACATTCCGCATATCTCAGGGGACAATATATTTGTTTGAGCAAAATCTTTTTTTTTTTGCTTCATGTGTTCATTGCATTGGATGTTCTTTTTAGTGCTATAGTGCTTTTTCTGTATTTCATTATGATGCCAATCCAGTTCTTAGTGCTATAGTGCTTTTTCTGTATTTCATTATGATGCCAATCCAGTTCTTAGGGTAAGTAAAATTTTGAAGCCCCATGCTTTTGTACCGCCTTTTCCTCTTTATTGTGATGTTGTATTTCAGTGGCTTATTCCGCATATATGTGAATCTGCAGGCGATGCATTTGCTTGAGCAAAATATGTTTTTGCTTTACATATATTCATTGCATTGAATGTTCCTTCTCCTCGTTTTGATTTGTTAGGATAACTTTTATTGGTTCTATTGAATGTTTAAAATAAGGAAGGTGAAGCCATATCCTGTAGACAAATGATCATTTTCCATATGATAGTTTAATTTGCTCCTTCTTAGCCCCTTGACCGTCCTTTCTTAATGACGGTCTTACTCTTTGGTAAATTTCTGTTTCTTATGACACAGTTTGACACTAGTGATCTCTTCTTGTCCTGCCTCTTGTTTGGCCAGACACGTAAGGTTCTTTACAAATAGGAGACTGAAACAGTCTTTTTTTCCTGTTCAATTCTTATCTATGGCTTCAATTACTTCTGCTGACCTTCTTAGGGGTCCATTTTCATGGAACAAAGGGTGGTGGGGACCGGGTGTTGAGATTCTTTTTTAGCCCTGAACTTGTCGTTAAGACGCTATGATTCTCAACTATGGTGGAGGGGGACAAATTGATTAGTGCTACAGATACTGGTTCATCACAACTAAGGGTGCGATGGAGAACAAGTTGACTCTGGTTCAGCATTTGCTCTTATTTTGTTGCATGAGTTGGACTTATCTCGAAGTAGAGTCTATAGATAAATTCGGTTTAGCACTTTGTCTTTGCTTGGTGACCAATAATAGGCAGGCACCAAGCATTGGAATTACAAGCTTTCCTACTACTGCGATTACGTATCACGGTCTGCTATAAACCCGGCTTCGCAACCTGAAGGATGGCTTGCCAAAGTCAGTCTAAGCAGTAAATTGGATCATAGTAGCAGACTTTTCCTGACAGACATGGGCTCTGGTGGCACACTCTGTCCAATACACCCTCAGATTTCGGTCTACTCTACTAACAGATTTACATGCTTTGTTATGTAAGAAACATCGGAAATTATTTTAGTTGCAACTAGCTAACTTGATAAAATTTGTCACATCAAGCAGCACTTGCCTAGTGCTTCTTTACTCCGTCTAAGAGATCAGGCTTTTCATTCATTCAAGAGAGAAGAAGAAGAGCAGAAGTGTGTAGCAAACAATCATTTTATTAATGCTAAAAGATGTAAAAGCTCTTAAGATAAAGATTCTTAATTTTTGAAATATCTACTAACTATTGGTCCTACTCCTAAAGTTTAAGACCAACCTAAGAATAAAAAATATTAGGCTTAAGTTATCGACAGCCCTTTAAAGTTATTCGCATAATTCACTTAGACATCTCAACTAAGTCTATTACCTATTAGACACTTTAATATTAAAGAATATGTATTCATTGAACATATAACAAAAACTCTCTTTAAAATTATTTTGCGTGTAATTCACGCGCATCATCTTAAAATAATGACAAATAAAATTATGACACATTGCACATGGTTCCAGTCTAGCAATAAAATATAATTTTTTATTTTAAAAAATGAAAAATATTTTTCAGCCTTTACTTATTAATCACAAAAATATTTAAAAAGAAAATCTCCCCCACCCCCACCTAACCCTTTACCTTTCTTCTTCCTTTTATCATGTGAACCCTGCAGCCACCATGAATTCCTCTCTTGTTAACTAAGATAACAAAAGTAAAAATCCCCCCCTCAAATTCATTCTTCTAGATCGGTTATTCTCGTGAGGAAGAAAGATTGGAAGTATGTTGAATTTTTTAATATCATCTTTAATAAGTTCAATGCGTGGAGATGTTTGTTCAATCGGAGTGATCGGAATAGAGATGGACGAATATCGATCAATTTTTAACTCCAGTGTTCAAAATTTTTCTTCTTTCTCACATATTAAATTAGCAAATTTTTTTCACAAAAAATAAAGAAAAAAAAAGAATGAAAAAAAATGCTAAGAATTTAATATCATTAAAATAGTGGAGAAAGAAGATGACCGTTAATCCATGGCTATGGGTGTGGGTGTGGGTGTGTGGTGCGGTTGGTATGAAGAGATAAATGTGAAACTAATATTATTTTTTAATTATTTAGTTAAATGTATGTCAGCAGTGAAAAAAATAGGTACCATTTAATAAAAAATAAAATTTTGCTCTATTCATGCGTTAAGTAGCAGTGACACGCACTTGTTTCGTCACATTAGCGTTTTGTGTTTAATTGAAAGATATTTTGAAAAATTTAGGTGTTCAATAGGTGTATGTCCTAGTTGAGGTGTCTAAATGAATTATGCAGACAATTGTAAGGGGCTGTCGATAATTTCAGCCAAAATATTATCTTACATGACCATCATTTTAGAAGTAGTAAAGCCCTATTTTGTCCAAAAATAGTAAATCTTTATCTGGGCATGCAATTAATATATGACACTCCATTCAAAAAAGGTCCACTAACATGTGAAGCAGTCTAACAACAACTCACTAACAAAACAATAAACATGTAAAACTATATGTTGTTGGCATGTCACAGCACGAGCAAGCAGGTGTGTGAGCAGCTTGTAGGCACTAGCAAATATGCGGGTAAGCTTCTTTTAAGCATCTTGCAAGCAAGCGAGTATGTTGTTGTTCTGCAAGCAAGCTTCTTTTAAGCATCTTGCAAGCAAGCGAGTATGTTGTTGTTCTGCAAGCAAGTGGTAAATCACTTGTAGGCATTTCTGCAAGTAGGTGGATAAGCAACCTGTGGGAAGATCTGTAAGTAAGTGGATAAGCACCTGTGGGAAGATGGATAGACAAACTAAACTAGGAAGATTTATGGCGGACTTGCACATGTCATCAAGATTATTCGACTGTACGATGTTGAAGATCTTGATAGCAGGCTTGCGTACCCTTCCTCCATTCACCAGTCCACTCCATGTCTGGTGTGGGATCTAAGAAGGTTGATAGAAGGTTTCTTTTCTTGCTCTGTTAAAAATCTTTTGGAGGATTCCTCTTTCATCTAGCCCGATAGGGAAATCCATACTAGACATGGTCTTGGATGGAAGAACGATACGCAAGCCGTCCGTCAAGACCCTCAACAATGTGTAATCTAATAATGCCTGATGACATGTGTAAGAAAGTACCCATTTACCTCTACCTCCATAAAATCTTCCTAGTTAAATGTGCCTACCGTCTTCCTACAAGTTATTTGTGCCTACAAGTAGCTTACCACCTGCTTGTAGAACAACAACAAACTGGTCTGCTTATAAGTTGCCTATAAGGTGCTCACCCACCTACTTGCACATGATGTCCCATGCCAACAACATATTTAGTTTTACGTGTATTTTGTTTTGTTAGGCTTCTTCACATGTTAGTGGGGGTCTGTTTGAACAATAAAGTTTGTCATGTATTTAGTTTTATTGGGATAGAAGAGTTGTAGCCAGGTTAGGAATTTACTATTTTTAGACTGGATAGGGGTTTACTATTGGTGGACCATGGAAGACTTAGGTCTGTCTATATTATCTTCCCTACATAAAGGAGGCCAAGCAATAGTTAGTTAGGGATGACAATGGGGAGCGGTGAGGGCGGGGCGAGATTTTCCTAATGCGGGTTAGGGCGGATTTTACTTTATGCGGGTGGGTTGAAAATTTTTCAAAGGAATTTAATGCGGGTGTGGGGCGGGTTCCTCCCTCCACATTTTGGAGCAAAACAGAGTTGCATTATTTTGCCCTTCAACAATTTTACAATTAACGATCTTCACAGTTTTACAACTTGATTATTATTTTTTTTTTCATCGGGTTGAAATTAAATTTTCTTTTCATTTCAATATTTATGTACCTCACATGGTTGAAATGATATACTAATATTAGTGGAAAACAACAAATATTTCTTTTATATAAAAACAACAGGTAAAATTCAAGATAGTGAATTTTCTTTTTTGTTCCTCGTTTCTTCCTGTCAAGTTCTGGGTTCATAAGCACCCTTTAACTTTGTACAAGTCATATAAATATAATTACAATAAATGTTGAAGTAGTATAATGATCAGAGGAATTGACAAAAAAAAAAGAAAGATAAAAATGACAAAATAAAAAAGAGAGAAAAAATTGCAATATGATACTTCTTCGTGATAATGAAAAAGAATTATGTGGGGTGGGTCCGTGGGGGGTTTATGTTGGGCGGGTTAAAACTAGAATATTTTATTATGTGGGGTGGGGCGGGGTGGGGCGGGTTGGAATGTTTGCCGTTTACGTGGGTTTGCCTCGCAACTGCCCTGCCCCAGTCCGCTCCGTTTGCCATCCCTATAATTAGTAGAGATATTAAAAATTAGGATGTTTTTATCTTATAGCTCGTATATTGTTTAGTGTGATGAATAAAATGATTGCTGGCTAAATACTTCTCTCTTGAAGGGATGGAAAGTCCACTCCCGTAGTCGGATAAGGAAACACTAGTGAGTGTGCTTGTTGTGATTTCAATGGTGTTGTTCCATGTCCCTCTCCCGCTGCGACTCTGATCATGTGTGTTTATGTTGATGCAGGGCCAAGATATATACAATTCAAAACAAGTGAGGGATAAACAAATAGTTCGCATCCTTGGAAAGGTTATTTCTATTAGCTTTTCACTCAACTGTCTTTGATTGCTTAAACTGCTGAAATAGTCAAATTATGAACTCATGTTCCTTTTTGATGTGTACAGCCTTGACTGTTATCTACAATCATTGCACTAATCCATCCTCTTATTAACTGAATTTTGGCAGGCACCTGTAATTGCTGCAGCTGCCTACTTGAGGATGGCTGGAAGACCACCTGTCCTTCCGTCCAACAACCTTTCTTATGCAGAGAACTTCTTGTACATGC</genome_strand>
        <mrna_strand>TGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAA....................................................................................................ATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAA...................................................................................................................................................................................................................................TGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGCCAATCCAGCTCTTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAGATATATACAATTCAAAACAAGTGAGGGATAAACAAATAGTTCGCATCCTTGGAAAG............................................................................................................................................................GCACCTGTAATTGCTGCAGCTGCCTACTTGAGGATGGCTGGAAGACCACCTGTCCTTCCGTCCAACAACCTTTCTTATGCAGAGAACTTTTTGTACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292156" ref_strand="+" ref_description="SGN-E292156 [cLET-1-C16]">
      <seq>tgccgtgtcgccgccgcctaatctgaaaggcgccttgacaatcattgatgagaggaccggtaagaagtatcaggttccggttaccgaggaaggaactgttaaagctaccgactttaagaaaatatctactggatacaatgataagggtctcaagctttatgatccgggctatctcaacactgcacccgttcgttcatcaatatgttacatagatggtgatgcagggattctcaggtatcgaggttacccgattgaagagttggctgagagaagttccttcttagaagtggcttatcttttaatgtatggtaatttaccatctgagaaccaattatcagactgggagtttgcagtttcacatcattcagcagttcctcagggagttttggatatcatacagtcaatgcctcatgatgctcacccgatgggtgttcttgttagtgctatgagcaccctatctgtctttcatcctgatgccaatccagctcttaggggccaagatatatacaattcaaaacaagtgagggataaacaaatagttcgcatccttggaaaggcacctgtaattgctgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="28849" stop="21891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28549" g_stop="28429" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28428" i_stop="28329" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28328" g_stop="28148" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="302" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28147" i_stop="27921" i_length="227">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27920" g_stop="27835" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="388" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27834" i_stop="27322" i_length="513">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27321" g_stop="27217" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="493" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27216" i_stop="22430" i_length="4787">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22429" g_stop="22367" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="556" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22366" i_stop="22211" i_length="156">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22210" g_stop="22191" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="576" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E292156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28549" e_stop="28429"/>
          <exon e_start="28328" e_stop="28148"/>
          <exon e_start="27920" e_stop="27835"/>
          <exon e_start="27321" e_stop="27217"/>
          <exon e_start="22429" e_stop="22367"/>
          <exon e_start="22210" e_stop="22191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAAGTAAGCTTCTATGCTTGTTTGCGTCGTGTAGTTAGTACTATTTGTTTTGATTATTATTTTATTTTTTTTATATATACTGTAATTGTTATTTGTTATATAGATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAAGTAAGTGTTAATAATGAAATTTACTTCATCAGATTCTTAAGCCTCACTTCTAATGCATCATTGGATTTCTTCAACTGCTTTTTGTAAATACCAGTCAATGTTCTTGTTATCTTGAAATGAGTTCGTTGCTCTGAAGGTTCTGCTTCAGAAGCTGGTTTATGTTACTTCACAGTTTTGATTCATAAGATGGTTCATATTTTATCAATGGCGTTACGTGAATTATGCAGTGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTGGTACGATCATATCTTAATTTTCGAAGAAAGCTTTATTTTGTGTGTTCCACTCTCAAGCGCTATTCATTATCTTAGGAGACAGGCTACAACCTCTTTGTTGTGCATTTCTCACTATACTTATCTTAAAAAGTGTTGCCCCTTGACGCATGAAGCTTCTGAAAAACAAGGGCATGTACATATAAGACATGCTTGTCTATTCGCCCCATCTGGTAGCTTGCTGATTTCAAGCATTGTTGTTCCAGGCGAGTCAAGTGGCTAAAATAGATTATTTCACACCTTTGTCCATCTGAACCTAGCTCTAGAGAGCATGATTATTTTGCTATATATGAACTGGAATGTGATGTTATGCTTATATATTTTTCTATATATGAACTGGAATGTTAGCATTATGAGATATTATGCTTATATATTTTTCCAGATGTTCAGACCACATTTCATGTGTTTCCGTGCGGATCATTTCGATGCGAGTGGTTTTGAGTGTAGCTGAGATAATTGTGTGATCTTGTGTTGCAGGATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGCCAATCCAGCTCTTAGGGTAAGCAAATTTTGAAGTTCCCAACTTTTGATCCCTTCTTTGCCCCTCTTATGTGATGATGCTGTATTACACCGGCACATTCCGCATATCTCAGGGGACAATATATTTGTTTGAGCAAAATCTTTTTTTTTTTGCTTCATGTGTTCATTGCATTGGATGTTCTTTTTAGTGCTATAGTGCTTTTTCTGTATTTCATTATGATGCCAATCCAGTTCTTAGTGCTATAGTGCTTTTTCTGTATTTCATTATGATGCCAATCCAGTTCTTAGGGTAAGTAAAATTTTGAAGCCCCATGCTTTTGTACCGCCTTTTCCTCTTTATTGTGATGTTGTATTTCAGTGGCTTATTCCGCATATATGTGAATCTGCAGGCGATGCATTTGCTTGAGCAAAATATGTTTTTGCTTTACATATATTCATTGCATTGAATGTTCCTTCTCCTCGTTTTGATTTGTTAGGATAACTTTTATTGGTTCTATTGAATGTTTAAAATAAGGAAGGTGAAGCCATATCCTGTAGACAAATGATCATTTTCCATATGATAGTTTAATTTGCTCCTTCTTAGCCCCTTGACCGTCCTTTCTTAATGACGGTCTTACTCTTTGGTAAATTTCTGTTTCTTATGACACAGTTTGACACTAGTGATCTCTTCTTGTCCTGCCTCTTGTTTGGCCAGACACGTAAGGTTCTTTACAAATAGGAGACTGAAACAGTCTTTTTTTCCTGTTCAATTCTTATCTATGGCTTCAATTACTTCTGCTGACCTTCTTAGGGGTCCATTTTCATGGAACAAAGGGTGGTGGGGACCGGGTGTTGAGATTCTTTTTTAGCCCTGAACTTGTCGTTAAGACGCTATGATTCTCAACTATGGTGGAGGGGGACAAATTGATTAGTGCTACAGATACTGGTTCATCACAACTAAGGGTGCGATGGAGAACAAGTTGACTCTGGTTCAGCATTTGCTCTTATTTTGTTGCATGAGTTGGACTTATCTCGAAGTAGAGTCTATAGATAAATTCGGTTTAGCACTTTGTCTTTGCTTGGTGACCAATAATAGGCAGGCACCAAGCATTGGAATTACAAGCTTTCCTACTACTGCGATTACGTATCACGGTCTGCTATAAACCCGGCTTCGCAACCTGAAGGATGGCTTGCCAAAGTCAGTCTAAGCAGTAAATTGGATCATAGTAGCAGACTTTTCCTGACAGACATGGGCTCTGGTGGCACACTCTGTCCAATACACCCTCAGATTTCGGTCTACTCTACTAACAGATTTACATGCTTTGTTATGTAAGAAACATCGGAAATTATTTTAGTTGCAACTAGCTAACTTGATAAAATTTGTCACATCAAGCAGCACTTGCCTAGTGCTTCTTTACTCCGTCTAAGAGATCAGGCTTTTCATTCATTCAAGAGAGAAGAAGAAGAGCAGAAGTGTGTAGCAAACAATCATTTTATTAATGCTAAAAGATGTAAAAGCTCTTAAGATAAAGATTCTTAATTTTTGAAATATCTACTAACTATTGGTCCTACTCCTAAAGTTTAAGACCAACCTAAGAATAAAAAATATTAGGCTTAAGTTATCGACAGCCCTTTAAAGTTATTCGCATAATTCACTTAGACATCTCAACTAAGTCTATTACCTATTAGACACTTTAATATTAAAGAATATGTATTCATTGAACATATAACAAAAACTCTCTTTAAAATTATTTTGCGTGTAATTCACGCGCATCATCTTAAAATAATGACAAATAAAATTATGACACATTGCACATGGTTCCAGTCTAGCAATAAAATATAATTTTTTATTTTAAAAAATGAAAAATATTTTTCAGCCTTTACTTATTAATCACAAAAATATTTAAAAAGAAAATCTCCCCCACCCCCACCTAACCCTTTACCTTTCTTCTTCCTTTTATCATGTGAACCCTGCAGCCACCATGAATTCCTCTCTTGTTAACTAAGATAACAAAAGTAAAAATCCCCCCCTCAAATTCATTCTTCTAGATCGGTTATTCTCGTGAGGAAGAAAGATTGGAAGTATGTTGAATTTTTTAATATCATCTTTAATAAGTTCAATGCGTGGAGATGTTTGTTCAATCGGAGTGATCGGAATAGAGATGGACGAATATCGATCAATTTTTAACTCCAGTGTTCAAAATTTTTCTTCTTTCTCACATATTAAATTAGCAAATTTTTTTCACAAAAAATAAAGAAAAAAAAAGAATGAAAAAAAATGCTAAGAATTTAATATCATTAAAATAGTGGAGAAAGAAGATGACCGTTAATCCATGGCTATGGGTGTGGGTGTGGGTGTGTGGTGCGGTTGGTATGAAGAGATAAATGTGAAACTAATATTATTTTTTAATTATTTAGTTAAATGTATGTCAGCAGTGAAAAAAATAGGTACCATTTAATAAAAAATAAAATTTTGCTCTATTCATGCGTTAAGTAGCAGTGACACGCACTTGTTTCGTCACATTAGCGTTTTGTGTTTAATTGAAAGATATTTTGAAAAATTTAGGTGTTCAATAGGTGTATGTCCTAGTTGAGGTGTCTAAATGAATTATGCAGACAATTGTAAGGGGCTGTCGATAATTTCAGCCAAAATATTATCTTACATGACCATCATTTTAGAAGTAGTAAAGCCCTATTTTGTCCAAAAATAGTAAATCTTTATCTGGGCATGCAATTAATATATGACACTCCATTCAAAAAAGGTCCACTAACATGTGAAGCAGTCTAACAACAACTCACTAACAAAACAATAAACATGTAAAACTATATGTTGTTGGCATGTCACAGCACGAGCAAGCAGGTGTGTGAGCAGCTTGTAGGCACTAGCAAATATGCGGGTAAGCTTCTTTTAAGCATCTTGCAAGCAAGCGAGTATGTTGTTGTTCTGCAAGCAAGCTTCTTTTAAGCATCTTGCAAGCAAGCGAGTATGTTGTTGTTCTGCAAGCAAGTGGTAAATCACTTGTAGGCATTTCTGCAAGTAGGTGGATAAGCAACCTGTGGGAAGATCTGTAAGTAAGTGGATAAGCACCTGTGGGAAGATGGATAGACAAACTAAACTAGGAAGATTTATGGCGGACTTGCACATGTCATCAAGATTATTCGACTGTACGATGTTGAAGATCTTGATAGCAGGCTTGCGTACCCTTCCTCCATTCACCAGTCCACTCCATGTCTGGTGTGGGATCTAAGAAGGTTGATAGAAGGTTTCTTTTCTTGCTCTGTTAAAAATCTTTTGGAGGATTCCTCTTTCATCTAGCCCGATAGGGAAATCCATACTAGACATGGTCTTGGATGGAAGAACGATACGCAAGCCGTCCGTCAAGACCCTCAACAATGTGTAATCTAATAATGCCTGATGACATGTGTAAGAAAGTACCCATTTACCTCTACCTCCATAAAATCTTCCTAGTTAAATGTGCCTACCGTCTTCCTACAAGTTATTTGTGCCTACAAGTAGCTTACCACCTGCTTGTAGAACAACAACAAACTGGTCTGCTTATAAGTTGCCTATAAGGTGCTCACCCACCTACTTGCACATGATGTCCCATGCCAACAACATATTTAGTTTTACGTGTATTTTGTTTTGTTAGGCTTCTTCACATGTTAGTGGGGGTCTGTTTGAACAATAAAGTTTGTCATGTATTTAGTTTTATTGGGATAGAAGAGTTGTAGCCAGGTTAGGAATTTACTATTTTTAGACTGGATAGGGGTTTACTATTGGTGGACCATGGAAGACTTAGGTCTGTCTATATTATCTTCCCTACATAAAGGAGGCCAAGCAATAGTTAGTTAGGGATGACAATGGGGAGCGGTGAGGGCGGGGCGAGATTTTCCTAATGCGGGTTAGGGCGGATTTTACTTTATGCGGGTGGGTTGAAAATTTTTCAAAGGAATTTAATGCGGGTGTGGGGCGGGTTCCTCCCTCCACATTTTGGAGCAAAACAGAGTTGCATTATTTTGCCCTTCAACAATTTTACAATTAACGATCTTCACAGTTTTACAACTTGATTATTATTTTTTTTTTCATCGGGTTGAAATTAAATTTTCTTTTCATTTCAATATTTATGTACCTCACATGGTTGAAATGATATACTAATATTAGTGGAAAACAACAAATATTTCTTTTATATAAAAACAACAGGTAAAATTCAAGATAGTGAATTTTCTTTTTTGTTCCTCGTTTCTTCCTGTCAAGTTCTGGGTTCATAAGCACCCTTTAACTTTGTACAAGTCATATAAATATAATTACAATAAATGTTGAAGTAGTATAATGATCAGAGGAATTGACAAAAAAAAAAGAAAGATAAAAATGACAAAATAAAAAAGAGAGAAAAAATTGCAATATGATACTTCTTCGTGATAATGAAAAAGAATTATGTGGGGTGGGTCCGTGGGGGGTTTATGTTGGGCGGGTTAAAACTAGAATATTTTATTATGTGGGGTGGGGCGGGGTGGGGCGGGTTGGAATGTTTGCCGTTTACGTGGGTTTGCCTCGCAACTGCCCTGCCCCAGTCCGCTCCGTTTGCCATCCCTATAATTAGTAGAGATATTAAAAATTAGGATGTTTTTATCTTATAGCTCGTATATTGTTTAGTGTGATGAATAAAATGATTGCTGGCTAAATACTTCTCTCTTGAAGGGATGGAAAGTCCACTCCCGTAGTCGGATAAGGAAACACTAGTGAGTGTGCTTGTTGTGATTTCAATGGTGTTGTTCCATGTCCCTCTCCCGCTGCGACTCTGATCATGTGTGTTTATGTTGATGCAGGGCCAAGATATATACAATTCAAAACAAGTGAGGGATAAACAAATAGTTCGCATCCTTGGAAAGGTTATTTCTATTAGCTTTTCACTCAACTGTCTTTGATTGCTTAAACTGCTGAAATAGTCAAATTATGAACTCATGTTCCTTTTTGATGTGTACAGCCTTGACTGTTATCTACAATCATTGCACTAATCCATCCTCTTATTAACTGAATTTTGGCAGGCACCTGTAATTGCTGCAGC</genome_strand>
        <mrna_strand>TGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAA....................................................................................................ATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAA...................................................................................................................................................................................................................................TGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGCCAATCCAGCTCTTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAGATATATACAATTCAAAACAAGTGAGGGATAAACAAATAGTTCGCATCCTTGGAAAG............................................................................................................................................................GCACCTGTAATTGCTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212324" ref_strand="+" ref_description="SGN-E212324 [cLEC-74-G13]">
      <seq>aaatcttcagctgttgctcgaagtcggttatcggtaatcacagctcatctcgccgccgattactccgcctcctcccatggtctggaaacttcctctgtatctgcaccaaccgctgccgtgtcgccgccgcctaatctgaaaggcgccttgacaatcattgatgagaggaccggtaagaagtatcaggttccggttaccgaggaaggaactgttaaagctaccgactttaagaaaatatctactggatacaatgataagggtctcaagctttatgatccgggctatctcaacactgcacccgttcgttcatcaatatgttacatagatggtgatgcagggattctcaggtatcgaggttacccgattgaagagttggctgagagaagttccttcttagaagtggcttatcttttaatgtatggtaatttaccatctgagaaccaattatcagactgggagtttgcagtttcacatcattcagcagttcctcagggagttttggatatcatacagtcaatgcctcatgatgctcacccgatgggtgttcttgttagtgctatgagcaccctatctgtctttcatcctgatgccaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="28962" stop="26928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28662" g_stop="28429" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28428" i_stop="28329" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28328" g_stop="28148" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="415" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28147" i_stop="27921" i_length="227">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27920" g_stop="27835" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="501" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27834" i_stop="27322" i_length="513">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27321" g_stop="27228" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="595" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E212324" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28662" e_stop="28429"/>
          <exon e_start="28328" e_stop="28148"/>
          <exon e_start="27920" e_stop="27835"/>
          <exon e_start="27321" e_stop="27228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCAGCTGTTGCTCGAAGTCGGTTATCGGTAATCACAGCTCATCTCGCCGCCGATTACTCCGCCTCCTCCCATGGTCTGGAAACTTCCTCTGTATCTGCACCAACCGCTGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAAGTAAGCTTCTATGCTTGTTTGCGTCGTGTAGTTAGTACTATTTGTTTTGATTATTATTTTATTTTTTTTATATATACTGTAATTGTTATTTGTTATATAGATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAAGTAAGTGTTAATAATGAAATTTACTTCATCAGATTCTTAAGCCTCACTTCTAATGCATCATTGGATTTCTTCAACTGCTTTTTGTAAATACCAGTCAATGTTCTTGTTATCTTGAAATGAGTTCGTTGCTCTGAAGGTTCTGCTTCAGAAGCTGGTTTATGTTACTTCACAGTTTTGATTCATAAGATGGTTCATATTTTATCAATGGCGTTACGTGAATTATGCAGTGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTGGTACGATCATATCTTAATTTTCGAAGAAAGCTTTATTTTGTGTGTTCCACTCTCAAGCGCTATTCATTATCTTAGGAGACAGGCTACAACCTCTTTGTTGTGCATTTCTCACTATACTTATCTTAAAAAGTGTTGCCCCTTGACGCATGAAGCTTCTGAAAAACAAGGGCATGTACATATAAGACATGCTTGTCTATTCGCCCCATCTGGTAGCTTGCTGATTTCAAGCATTGTTGTTCCAGGCGAGTCAAGTGGCTAAAATAGATTATTTCACACCTTTGTCCATCTGAACCTAGCTCTAGAGAGCATGATTATTTTGCTATATATGAACTGGAATGTGATGTTATGCTTATATATTTTTCTATATATGAACTGGAATGTTAGCATTATGAGATATTATGCTTATATATTTTTCCAGATGTTCAGACCACATTTCATGTGTTTCCGTGCGGATCATTTCGATGCGAGTGGTTTTGAGTGTAGCTGAGATAATTGTGTGATCTTGTGTTGCAGGATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGCCAATC</genome_strand>
        <mrna_strand>AAATCTTCAGCTGTTGCTCGAAGTCGGTTATCGGTAATCACAGCTCATCTCGCCGCCGATTACTCCGCCTCCTCCCATGGTCTGGAAACTTCCTCTGTATCTGCACCAACCGCTGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAA....................................................................................................ATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAA...................................................................................................................................................................................................................................TGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGCCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394164" ref_strand="+" ref_description="SGN-E394164 [TUS-42-I1]">
      <seq>ctgccgtgtccccgccgcctaatctgaaaggcgccttgacaatcattgatgagaggaccggtaagaagtatcaggttccggttaccgaggaaggaactgttaaagctaccgactttaagaaaatatctactggatacaatgataagggtctcaagctttatgatccgggctatctcaacactgcacccgttcgttcatcaatatgttacatagatggtgatgcagggattctcaggtatcgaggttacccgattgaagagttggctgagagaagttccttcttagaagtggcttatcttttaatgtatggtaatttaccatctgagaaccaattatcagactgggagtttgcagtttcacatcattcaccagttcctcagggagttttggatatcctacagtcaatgcctcatgatgctcacccgatgggtgttcttgttagtgctatgaccccccctatctgtctttcatcctgatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="28850" stop="26931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28550" g_stop="28429" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28428" i_stop="28329" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28328" g_stop="28148" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="303" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28147" i_stop="27921" i_length="227">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27920" g_stop="27835" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="389" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27834" i_stop="27322" i_length="513">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27321" g_stop="27231" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="481" r_length="92" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E394164" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28550" e_stop="28429"/>
          <exon e_start="28328" e_stop="28148"/>
          <exon e_start="27920" e_stop="27835"/>
          <exon e_start="27321" e_stop="27231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAAGTAAGCTTCTATGCTTGTTTGCGTCGTGTAGTTAGTACTATTTGTTTTGATTATTATTTTATTTTTTTTATATATACTGTAATTGTTATTTGTTATATAGATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAAGTAAGTGTTAATAATGAAATTTACTTCATCAGATTCTTAAGCCTCACTTCTAATGCATCATTGGATTTCTTCAACTGCTTTTTGTAAATACCAGTCAATGTTCTTGTTATCTTGAAATGAGTTCGTTGCTCTGAAGGTTCTGCTTCAGAAGCTGGTTTATGTTACTTCACAGTTTTGATTCATAAGATGGTTCATATTTTATCAATGGCGTTACGTGAATTATGCAGTGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTGGTACGATCATATCTTAATTTTCGAAGAAAGCTTTATTTTGTGTGTTCCACTCTCAAGCGCTATTCATTATCTTAGGAGACAGGCTACAACCTCTTTGTTGTGCATTTCTCACTATACTTATCTTAAAAAGTGTTGCCCCTTGACGCATGAAGCTTCTGAAAAACAAGGGCATGTACATATAAGACATGCTTGTCTATTCGCCCCATCTGGTAGCTTGCTGATTTCAAGCATTGTTGTTCCAGGCGAGTCAAGTGGCTAAAATAGATTATTTCACACCTTTGTCCATCTGAACCTAGCTCTAGAGAGCATGATTATTTTGCTATATATGAACTGGAATGTGATGTTATGCTTATATATTTTTCTATATATGAACTGGAATGTTAGCATTATGAGATATTATGCTTATATATTTTTCCAGATGTTCAGACCACATTTCATGTGTTTCCGTGCGGATCATTTCGATGCGAGTGGTTTTGAGTGTAGCTGAGATAATTGTGTGATCTTGTGTTGCAGGATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGA-GCACCCTATCTGTCTTTCATCCTGATGCCA</genome_strand>
        <mrna_strand>CTGCCGTGTCCCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAA....................................................................................................ATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAA...................................................................................................................................................................................................................................TGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCACCAGTTCCTCAGGGAGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCCTACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGACCCCCCCTATCTGTCTTTCATCCTGATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250488" ref_strand="+" ref_description="SGN-E250488 [cLEG-18-A23]">
      <seq>tgaaccatagaatttattagtaacactaatggagcgcgggaaatcttcagctgttgctcgaagtcggttatcggtaatcacagctcatctcgccgccgattactccgcctcctcccatggtctggaaacttcctctgtatctgcaccaaccgctgccgtgtcgccgccgcctaatctgaaaggcgccttgacaatcattgatgagaggaccggtaagaagtatcaggttccggttaccgaggaaggaactgttaaagctaccgactttaagaaaatatctactggatacaatgataagggtctcaagctttatgatccgggctatctcaacactgcacccgttcgttcatcaatatgttacatagatggtgatgcagggattctcaggtatcgaggttacccgattgaagagttggctgagagaagttccttcttagaagtggcttatcttttaatgtatggtaatttaccatctgagaaccaattatcagactgggagtttgcagtttcacatcattcagcagttcctcagggagttttggatatcatacagtcaatgcctcatgatgctcacccgatgggtgttcttgttagtgctatgagcaccctatctgtctttcatcctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="29002" stop="26933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28702" g_stop="28429" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28428" i_stop="28329" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28328" g_stop="28148" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="455" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28147" i_stop="27921" i_length="227">
            <donor d_prob="0.795" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27920" g_stop="27835" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="541" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27834" i_stop="27322" i_length="513">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27321" g_stop="27233" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="630" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E250488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28702" e_stop="28429"/>
          <exon e_start="28328" e_stop="28148"/>
          <exon e_start="27920" e_stop="27835"/>
          <exon e_start="27321" e_stop="27233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCATAGAATTTATTAGTAACACTAATGGAGCGCGGGAAATCTTCAGCTGTTGCTCGAAGTCGGTTATCGGTAATCACAGCTCATCTCGCCGCCGATTACTCCGCCTCCTCCCATGGTCTGGAAACTTCCTCTGTATCTGCACCAACCGCTGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAAGTAAGCTTCTATGCTTGTTTGCGTCGTGTAGTTAGTACTATTTGTTTTGATTATTATTTTATTTTTTTTATATATACTGTAATTGTTATTTGTTATATAGATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAAGTAAGTGTTAATAATGAAATTTACTTCATCAGATTCTTAAGCCTCACTTCTAATGCATCATTGGATTTCTTCAACTGCTTTTTGTAAATACCAGTCAATGTTCTTGTTATCTTGAAATGAGTTCGTTGCTCTGAAGGTTCTGCTTCAGAAGCTGGTTTATGTTACTTCACAGTTTTGATTCATAAGATGGTTCATATTTTATCAATGGCGTTACGTGAATTATGCAGTGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTGGTACGATCATATCTTAATTTTCGAAGAAAGCTTTATTTTGTGTGTTCCACTCTCAAGCGCTATTCATTATCTTAGGAGACAGGCTACAACCTCTTTGTTGTGCATTTCTCACTATACTTATCTTAAAAAGTGTTGCCCCTTGACGCATGAAGCTTCTGAAAAACAAGGGCATGTACATATAAGACATGCTTGTCTATTCGCCCCATCTGGTAGCTTGCTGATTTCAAGCATTGTTGTTCCAGGCGAGTCAAGTGGCTAAAATAGATTATTTCACACCTTTGTCCATCTGAACCTAGCTCTAGAGAGCATGATTATTTTGCTATATATGAACTGGAATGTGATGTTATGCTTATATATTTTTCTATATATGAACTGGAATGTTAGCATTATGAGATATTATGCTTATATATTTTTCCAGATGTTCAGACCACATTTCATGTGTTTCCGTGCGGATCATTTCGATGCGAGTGGTTTTGAGTGTAGCTGAGATAATTGTGTGATCTTGTGTTGCAGGATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGC</genome_strand>
        <mrna_strand>TGAACCATAGAATTTATTAGTAACACTAATGGAGCGCGGGAAATCTTCAGCTGTTGCTCGAAGTCGGTTATCGGTAATCACAGCTCATCTCGCCGCCGATTACTCCGCCTCCTCCCATGGTCTGGAAACTTCCTCTGTATCTGCACCAACCGCTGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAA....................................................................................................ATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAA...................................................................................................................................................................................................................................TGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314940" ref_strand="+" ref_description="SGN-E314940 [cTOA-31-C11]">
      <seq>tgaaccatagaatttattagtaacactaatggagcgcgggaaatcttcagctgttgctcgaagtcggttatcggtaatcacagctcatctcgccgccgattactccgcctcctcccatggtctggaaacttcctctgtatctgcaccaaccgctgccgtgtcgccgccgcctaatctgaaaggcgccttgacaatcattgatgagaggaccggtaagaagtatcaggttccggttaccgaggaaggaactgttaaagctaccgactttaagaaaatatctactggatacaatgataagggtctcaagctttatgatccgggctatctcaacctgcancccgttcgttcatcaatatgttacatagatggtgatgcagggattctcaggtatcgaggttacccgattgaagagttggctgagagaagttccttcttagaagtggcttatctttnaatgtatggtaatttaccatctgagaaaccattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="29002" stop="27588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28702" g_stop="28429" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28428" i_stop="28329" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28328" g_stop="28148" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="455" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28147" i_stop="27921" i_length="227">
            <donor d_prob="0.795" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27920" g_stop="27888" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="488" r_length="33" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E314940" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28702" e_stop="28429"/>
          <exon e_start="28328" e_stop="28148"/>
          <exon e_start="27920" e_stop="27888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCATAGAATTTATTAGTAACACTAATGGAGCGCGGGAAATCTTCAGCTGTTGCTCGAAGTCGGTTATCGGTAATCACAGCTCATCTCGCCGCCGATTACTCCGCCTCCTCCCATGGTCTGGAAACTTCCTCTGTATCTGCACCAACCGCTGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAAGTAAGCTTCTATGCTTGTTTGCGTCGTGTAGTTAGTACTATTTGTTTTGATTATTATTTTATTTTTTTTATATATACTGTAATTGTTATTTGTTATATAGATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCA-CCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAAGTAAGTGTTAATAATGAAATTTACTTCATCAGATTCTTAAGCCTCACTTCTAATGCATCATTGGATTTCTTCAACTGCTTTTTGTAAATACCAGTCAATGTTCTTGTTATCTTGAAATGAGTTCGTTGCTCTGAAGGTTCTGCTTCAGAAGCTGGTTTATGTTACTTCACAGTTTTGATTCATAAGATGGTTCATATTTTATCAATGGCGTTACGTGAATTATGCAGTGTATGGTAATTTACCATCTGAGAACCAATTAT</genome_strand>
        <mrna_strand>TGAACCATAGAATTTATTAGTAACACTAATGGAGCGCGGGAAATCTTCAGCTGTTGCTCGAAGTCGGTTATCGGTAATCACAGCTCATCTCGCCGCCGATTACTCCGCCTCCTCCCATGGTCTGGAAACTTCCTCTGTATCTGCACCAACCGCTGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAA....................................................................................................ATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAAC-CTGCANCCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTNAA...................................................................................................................................................................................................................................TGTATGGTAATTTACCATCTGAGAAACCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394622" ref_strand="+" ref_description="SGN-E394622 [TUS-42-G1]">
      <seq>ctgccgtgtcgccccctcctaatctgaaaggcgccttgacaatcattgatgagaggaccggtaagaagtatcaggttccggttaccgaggaaggaactgttaaagctaccgactttaagaaaatatctactggatacaatgataagggtctcaagctttatgatccgggctatctcaacactgcacccgttcgttcatcaatatgttacatagatggtgatgcagggattctcaggtatcgaggttacccgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="28850" stop="27897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28550" g_stop="28429" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28428" i_stop="28329" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28328" g_stop="28197" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="254" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E394622" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28550" e_stop="28429"/>
          <exon e_start="28328" e_stop="28197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAAGTAAGCTTCTATGCTTGTTTGCGTCGTGTAGTTAGTACTATTTGTTTTGATTATTATTTTATTTTTTTTATATATACTGTAATTGTTATTTGTTATATAGATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATT</genome_strand>
        <mrna_strand>CTGCCGTGTCGCCCCCTCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAA....................................................................................................ATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369928" ref_strand="+" ref_description="SGN-E369928 [TUS-26-B19](-)">
      <seq>gattgcgctaaaggtgattgagcatgtagcagatcctgctggattctgcaaatcattatcagcgttgaccattcctggtggtgctacagtgatatcaacgattaatcgttcaatgagagcatatgcaacggcaattgttgcagcagagtatctcctacattggcttccaaaaggtacacatcaatggtcaagctttctaaccccagaagaactagtcctcattcttcagcgcgcttctatatcggtgcaagagatggctggatttgtgtacaaccctttgacgggtcgctggtccttgtccgatgacatcagtgttaatttcatcgctttcggaacaaaatcagccaagaaggatgaaactctagattaagttacgatatagctgtcaattttattctgctgttaatctcttaacccattctgtatgtaatctctttttcagttttgttggatgatgaatgcaatttctatatgttagaatatgaacatccacatcacaagttcttaacttgaatgaaaatgtaccatttcgaaatttcaaatacatgtgtattatctttgattgataaaatttgtaacttcataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="30323" stop="28578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30021" g_stop="29872" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="163" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29871" i_stop="29407" i_length="465">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29406" g_stop="29326" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="244" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29325" i_stop="29221" i_length="105">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29220" g_stop="28883" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="582" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="583" polyA_stop="607"/>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E369928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30021" e_stop="29872"/>
          <exon e_start="29406" e_stop="29326"/>
          <exon e_start="29220" e_stop="28883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGGGTAAATATATTTAGTGGATCTTCTAAATTGTATTGGTAATTTTTGGTTGATGCCTTGCAAAACTTAAATGATATTTGTGCATGTGAGATTTGCTAGTTCACTTTGAACAAATAGAGGAAGGTGTATGAAAGGTGTGTCTAGATAGTTCTATGTATTGTTATTCTCTCGCACAAATCGAACTTCCAATTTATGTTGGAGCATTTAATTTGATTCAAATTTGATTATGCTTCAAAGTATTCCAATTACGTTTTGAGGACTCATTTTGCTCTATTTGTTAGGATTCATCTCGATGATATATACTAGCATTATCTGTACATAATAGCAGCCATGTCAAAAGGCAATTTTCTACTAATTGTTGTGTTCTTGTCAGCCATGCTTCCTATGTCTCTGTGTGTGTGTTTCTTGCATTTCTTTTTGGAGGGTTGTACAATTGCAAATTGCTAATGTTATAACTGGACTTTACAGCTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCGGCAAGTGGATTAAACATGCTTCTCTGTTTTTCACCTGTATCTTAATCAAGTCAATATCTATCTGTTTGCGCCCATTTGAAACAGTAATCTTTCTGCATTTTACAGGTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</genome_strand>
        <mrna_strand>GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCG.........................................................................................................GTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261419" ref_strand="+" ref_description="SGN-E261419 [cLEG-57-J19]">
      <seq>ttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatattaagattgctcgccttcatgcggatttggatccacaaacttcttcaattgaatatcggtgcacaacagctgaaagcctggttgaagaacagagacaattcgatgctgtgattgcgctagaggtgattgagcatgtagcagatcctgctggattctgcaaatcattatcagcgttgaccattcctggtggtgctacagtgatatcaacgattaatcgttcaatgagagcatatgcaacggcaattgttgcagcagagtatctcctacattggcttccaaaaggtacacatcaatggtcaagctttctaaccccagaagaactagtcctcattcttcagcgcgcttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35305" stop="29030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35005" g_stop="34753" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="343" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="422" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33388" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="500" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33387" i_stop="31999" i_length="1389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31998" g_stop="31950" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="549" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31949" i_stop="30796" i_length="1154">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30795" g_stop="30746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="599" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30745" i_stop="30022" i_length="724">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30021" g_stop="29872" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="749" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29871" i_stop="29407" i_length="465">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29406" g_stop="29330" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="826" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E261419" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35005" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33388"/>
          <exon e_start="31998" e_stop="31950"/>
          <exon e_start="30795" e_stop="30746"/>
          <exon e_start="30021" e_stop="29872"/>
          <exon e_start="29406" e_stop="29330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCGGTATGTTTACTTGAATGTTTCCAGGATGCACCATTAAACTGCTGTTTTTTTTTTTGCTTGTCTGGTTAATGTACAGTTTAAGGATCTTCCCATACCTGAGATATCATGAGTATTGGCATCAAAATTTACTAGTCTTATATTGATTCGGAGTTTATTGGTTCCTCACCTTGAGGGACACATACAATTTTGCTTCGTCAAATTATAGTTCATTTGAAGGTCACAGTGCTTATGATGGAAGAAAAGTTAAAAATTTAGAAGGGTTTTGAACTGATAACTTGAATGTTCATTGCCTAATTATAGTTAGTCATACTGACAACAAGTGCAAGAAAAAATTCATACGATGTTTATTCATCTTGGTTCAAATCCTACTTAGAGGTCCACTAGAGATAAAAATATGTTGAAGAAACAAGATCTTTCTTTTGATTCCTTTTAGGCAATTTGAAAATTAAAGAAATGGTCAAAGCCTAGGCATCATCGGGTGGAGATGAATCAATAGATTGGGGTTCATTAGGACCAGTGTCTTGTGCTTCCAGGATAGAAATCCTGTTGTTAGTCTCACAGCCGATGTTGTACATTACTACACATTAGAAGGTCCATGGGTTGGCAAGTTACCTATTTAGTAAAGATAGAACTAGACGTTTTGTATAGATTCTGTTATATTTTAAAGAAAATGGCACAGCTCTTTTTGCCTCTTCCACTGTATGAGTTTTCCTTTTTGCACAAACTGGGAACAAGCCAGATAGTTCCTTTATGCTATTGTTTCCCTGCACTCATATATGCTGTGATGTTCTGGAGCTTCACCGACAAAATTTGCACCAAGGCGTTCCCATGGTTGATATACTAAAACCAAAAGGGTGTAAAGTTAAATCATGTTCAAAAGATCGCATTTAAGTTGCAAAAATACCTAATTTTAGTCCATGTGGCTGTGTTGTCTTGGTATTCAATATAATATGTGTAGGATATTAACTCCTGGTATATGTATTCAACCAATATTATTGACTTCCTTAATTTTTTTTATCCAAAAAAATATTTTCAGTATATCCTTATATATATAATATATGTGCTTGTCCTTCCAACAGCCTAAGCAAAACTCTTGAGCCTGTGTCAAAATTTTCAAGGACTATTGTGTCTTTATGCAACAACAGAAGTTCTAGAACCTACTAGAGCATATTCTCTAAAATAATGTTGTTGATGAAGTAGTTGAAGCAATTTCGTAGAACTAATATACTTTCATTATATACAATGGTAGGATTAGCACATATCTCAGCAATAGATTTGCTGTTTGTTAAGCTAGAGTGCTATTTTAAACAGATAGTTTTTGAATTGTGACAGTCAAACCCGTATACATTCTATATGGTGGATGCTTATGAATGCTGATATTTCTTTCAGGATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTGGTACATGCCATACTTGTTTGATGAGAATTTAGTCCAAATATTGGTGACTTCTATATGTGCATGTTAATCTTTCATCTCGATGTACAATGAACAGACATTATCTTTTCTTTTTTATCATGTTGGTGCCTTCTTTAGTAAAGAATAGGAAAACGAGTCTGCATAACATCGGTTTTTGTTATGAATCATGTTAATGATCAAGCACTGGTTTAATCATGCTCAACTTATCAAATAGAAATGAATTTTTGGCATCTTAGCAAAGCCTCACTTTCTTTCCAAAATAGTTGAAGTGACAGATGACCAACTTGTTGTATGTTATTGCAATCTCCATTTGCAATTTTTATTTGTTGTAGTTCCAATTTAAGCTGCAATAGTGTGAAATTACTGCCGTTTAGTTGCATGAACCATAACAGAGACTCCTAGGGTAATTCATGGTCAATTATTATCACTGGTTAACCTCCTCCTCCTTTATGGAGAGTATGGAAGGTGGGTAATTGGTCATGATTGCATACTAATTAGTTGCAGCTTCATGATAATTCAGCTTTGTAGTTGTTATAACCCCTAATTTCCGTTTTCACTCAACTGTGTGGTTGGTTATTTTCTCGCTGTGAAAACTTAGCTGAATTATCATGTGTTCAATGATTGGAACTGTTTTTGGACTTGCAAAAATATCAGTGTGTGAGATTCCTGGTGAAAAAAAAGATATGTGCTTTGATGATTTTGTGGTGAACTTAGTTGCTTCTGTGTCTGTGATTTAGATTCTTTAGACTCTTTTCTTTGTAGTTATGTCCTCTTTCCTGGAAAAAAAACATATCCATCTCATTTTATAGTAGAAAAAAGACCTTTTTCAAGACAACTTGTGCCTAATTAAGTTACATACCAGCTACTTAAAATGTTAAAGGAAATCATGAATCAAGCTCAAGTGTTTTAGTTATATGGAGATTAGTCTATGTCACAAGGACATGGAATTTTTAATGATTTTGTTCTTGTTTATGTTGTTACGTACTTTTCAGCTATGGTGTATAACAATTTTAGCTATTGACACATCTGTTGATTTGAAGAAAAACGAATTCTCTTGTTTTATTTAAAATCTCAATTTAGTTGAATATCAAAGATTGTTCTTCGAAGAATGACCCTATTGAATGTTATGTCGACAGAAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAGGTATGACTTAATAAGTGATAAGCTAACTTTGTTCAAAGATTTATTATCTTCAGTACAATCCATCTGTTTTAGTAGATTGTACTTATATCATTTGTACCTTTTGCTTTGCAAAACTTCCACTATTTATTTGAAGTTAACATAGTACATTGTATAAAAGGCTTGGTCCTTTAAGCAGTTCTATGCTTTTATAGCTTTGTTGCACTTGCTCAAGTCTAATAACTGGCACCCAGGGGTGTGGTCTAGAGGTCAATGGAGTGGGTGAAAACCTTGGAGAGTAGGAGTCAAATCCTAACAAATACCACAATGCTAGGTGATTTCTTTCTATTTGCTGAAGCCTTTGTGGGCAGAGTTACCTGATTCATGTGCTGGTGAAAGGTTGCAGGTACCCGTTGGAATAATCTAGGTCCTCTTGTAAAAGGTAGCAGGTATCTGTTAGAAAAGTCAAGGTCCGCGCAAGCTTACCTGACCATCTTTTAGAAAGTCTAGTAATTGGAGGCTTTTAGAGCTCTCACAGGTCTGTTACACAGGGACAGATACTGACACAGATGGAGGGATGTATGTGATATGATCTCTTCTAGTATGTGTATCTAAGGAATTCTGACTGGTGATGTAAAAATGTAACAACTGGGGCAATATCGAAGTATTCTAATCTCCCCTCTTAAGAGGACCCAACTTCCGATCTGATCTCTTCTAGTATGTGTATCTTATTCTGCCTCTTTTGTAGGTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGGGTAAATATATTTAGTGGATCTTCTAAATTGTATTGGTAATTTTTGGTTGATGCCTTGCAAAACTTAAATGATATTTGTGCATGTGAGATTTGCTAGTTCACTTTGAACAAATAGAGGAAGGTGTATGAAAGGTGTGTCTAGATAGTTCTATGTATTGTTATTCTCTCGCACAAATCGAACTTCCAATTTATGTTGGAGCATTTAATTTGATTCAAATTTGATTATGCTTCAAAGTATTCCAATTACGTTTTGAGGACTCATTTTGCTCTATTTGTTAGGATTCATCTCGATGATATATACTAGCATTATCTGTACATAATAGCAGCCATGTCAAAAGGCAATTTTCTACTAATTGTTGTGTTCTTGTCAGCCATGCTTCCTATGTCTCTGTGTGTGTGTTTCTTGCATTTCTTTTTGGAGGGTTGTACAATTGCAAATTGCTAATGTTATAACTGGACTTTACAGCTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTAT</genome_strand>
        <mrna_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703179" ref_strand="+" ref_description="SGN-E703179 [FA20DB05]">
      <seq>ctcgttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacattgcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatattaagattgctcgccttcatgcggatttggatccacaaacttcttcaattgaatatcggtgcacaacagctgaaagcctggttgaagaacagagacaattcgatgctgtgattgcgctagaggtgattgagcatgtagcagatcctgctggattctgcaaatcattatcagcgttgaccattcctggtggtgctacagtgatatcaacgattaatcgttcaatgagagcatatgcaacggcaattgttgcagcagagtatctcctacattggcttccaaaaggtacacatcaatggtcaagctttctaaccccagaagaactagtcctcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35309" stop="29046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35009" g_stop="34753" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="347" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="426" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33388" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="504" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33387" i_stop="31999" i_length="1389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31998" g_stop="31950" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="553" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31949" i_stop="30796" i_length="1154">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30795" g_stop="30746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="603" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30745" i_stop="30022" i_length="724">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30021" g_stop="29872" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="753" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29871" i_stop="29407" i_length="465">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29406" g_stop="29346" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="814" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E703179" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35009" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33388"/>
          <exon e_start="31998" e_stop="31950"/>
          <exon e_start="30795" e_stop="30746"/>
          <exon e_start="30021" e_stop="29872"/>
          <exon e_start="29406" e_stop="29346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCGGTATGTTTACTTGAATGTTTCCAGGATGCACCATTAAACTGCTGTTTTTTTTTTTGCTTGTCTGGTTAATGTACAGTTTAAGGATCTTCCCATACCTGAGATATCATGAGTATTGGCATCAAAATTTACTAGTCTTATATTGATTCGGAGTTTATTGGTTCCTCACCTTGAGGGACACATACAATTTTGCTTCGTCAAATTATAGTTCATTTGAAGGTCACAGTGCTTATGATGGAAGAAAAGTTAAAAATTTAGAAGGGTTTTGAACTGATAACTTGAATGTTCATTGCCTAATTATAGTTAGTCATACTGACAACAAGTGCAAGAAAAAATTCATACGATGTTTATTCATCTTGGTTCAAATCCTACTTAGAGGTCCACTAGAGATAAAAATATGTTGAAGAAACAAGATCTTTCTTTTGATTCCTTTTAGGCAATTTGAAAATTAAAGAAATGGTCAAAGCCTAGGCATCATCGGGTGGAGATGAATCAATAGATTGGGGTTCATTAGGACCAGTGTCTTGTGCTTCCAGGATAGAAATCCTGTTGTTAGTCTCACAGCCGATGTTGTACATTACTACACATTAGAAGGTCCATGGGTTGGCAAGTTACCTATTTAGTAAAGATAGAACTAGACGTTTTGTATAGATTCTGTTATATTTTAAAGAAAATGGCACAGCTCTTTTTGCCTCTTCCACTGTATGAGTTTTCCTTTTTGCACAAACTGGGAACAAGCCAGATAGTTCCTTTATGCTATTGTTTCCCTGCACTCATATATGCTGTGATGTTCTGGAGCTTCACCGACAAAATTTGCACCAAGGCGTTCCCATGGTTGATATACTAAAACCAAAAGGGTGTAAAGTTAAATCATGTTCAAAAGATCGCATTTAAGTTGCAAAAATACCTAATTTTAGTCCATGTGGCTGTGTTGTCTTGGTATTCAATATAATATGTGTAGGATATTAACTCCTGGTATATGTATTCAACCAATATTATTGACTTCCTTAATTTTTTTTATCCAAAAAAATATTTTCAGTATATCCTTATATATATAATATATGTGCTTGTCCTTCCAACAGCCTAAGCAAAACTCTTGAGCCTGTGTCAAAATTTTCAAGGACTATTGTGTCTTTATGCAACAACAGAAGTTCTAGAACCTACTAGAGCATATTCTCTAAAATAATGTTGTTGATGAAGTAGTTGAAGCAATTTCGTAGAACTAATATACTTTCATTATATACAATGGTAGGATTAGCACATATCTCAGCAATAGATTTGCTGTTTGTTAAGCTAGAGTGCTATTTTAAACAGATAGTTTTTGAATTGTGACAGTCAAACCCGTATACATTCTATATGGTGGATGCTTATGAATGCTGATATTTCTTTCAGGATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTGGTACATGCCATACTTGTTTGATGAGAATTTAGTCCAAATATTGGTGACTTCTATATGTGCATGTTAATCTTTCATCTCGATGTACAATGAACAGACATTATCTTTTCTTTTTTATCATGTTGGTGCCTTCTTTAGTAAAGAATAGGAAAACGAGTCTGCATAACATCGGTTTTTGTTATGAATCATGTTAATGATCAAGCACTGGTTTAATCATGCTCAACTTATCAAATAGAAATGAATTTTTGGCATCTTAGCAAAGCCTCACTTTCTTTCCAAAATAGTTGAAGTGACAGATGACCAACTTGTTGTATGTTATTGCAATCTCCATTTGCAATTTTTATTTGTTGTAGTTCCAATTTAAGCTGCAATAGTGTGAAATTACTGCCGTTTAGTTGCATGAACCATAACAGAGACTCCTAGGGTAATTCATGGTCAATTATTATCACTGGTTAACCTCCTCCTCCTTTATGGAGAGTATGGAAGGTGGGTAATTGGTCATGATTGCATACTAATTAGTTGCAGCTTCATGATAATTCAGCTTTGTAGTTGTTATAACCCCTAATTTCCGTTTTCACTCAACTGTGTGGTTGGTTATTTTCTCGCTGTGAAAACTTAGCTGAATTATCATGTGTTCAATGATTGGAACTGTTTTTGGACTTGCAAAAATATCAGTGTGTGAGATTCCTGGTGAAAAAAAAGATATGTGCTTTGATGATTTTGTGGTGAACTTAGTTGCTTCTGTGTCTGTGATTTAGATTCTTTAGACTCTTTTCTTTGTAGTTATGTCCTCTTTCCTGGAAAAAAAACATATCCATCTCATTTTATAGTAGAAAAAAGACCTTTTTCAAGACAACTTGTGCCTAATTAAGTTACATACCAGCTACTTAAAATGTTAAAGGAAATCATGAATCAAGCTCAAGTGTTTTAGTTATATGGAGATTAGTCTATGTCACAAGGACATGGAATTTTTAATGATTTTGTTCTTGTTTATGTTGTTACGTACTTTTCAGCTATGGTGTATAACAATTTTAGCTATTGACACATCTGTTGATTTGAAGAAAAACGAATTCTCTTGTTTTATTTAAAATCTCAATTTAGTTGAATATCAAAGATTGTTCTTCGAAGAATGACCCTATTGAATGTTATGTCGACAGAAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAGGTATGACTTAATAAGTGATAAGCTAACTTTGTTCAAAGATTTATTATCTTCAGTACAATCCATCTGTTTTAGTAGATTGTACTTATATCATTTGTACCTTTTGCTTTGCAAAACTTCCACTATTTATTTGAAGTTAACATAGTACATTGTATAAAAGGCTTGGTCCTTTAAGCAGTTCTATGCTTTTATAGCTTTGTTGCACTTGCTCAAGTCTAATAACTGGCACCCAGGGGTGTGGTCTAGAGGTCAATGGAGTGGGTGAAAACCTTGGAGAGTAGGAGTCAAATCCTAACAAATACCACAATGCTAGGTGATTTCTTTCTATTTGCTGAAGCCTTTGTGGGCAGAGTTACCTGATTCATGTGCTGGTGAAAGGTTGCAGGTACCCGTTGGAATAATCTAGGTCCTCTTGTAAAAGGTAGCAGGTATCTGTTAGAAAAGTCAAGGTCCGCGCAAGCTTACCTGACCATCTTTTAGAAAGTCTAGTAATTGGAGGCTTTTAGAGCTCTCACAGGTCTGTTACACAGGGACAGATACTGACACAGATGGAGGGATGTATGTGATATGATCTCTTCTAGTATGTGTATCTAAGGAATTCTGACTGGTGATGTAAAAATGTAACAACTGGGGCAATATCGAAGTATTCTAATCTCCCCTCTTAAGAGGACCCAACTTCCGATCTGATCTCTTCTAGTATGTGTATCTTATTCTGCCTCTTTTGTAGGTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGGGTAAATATATTTAGTGGATCTTCTAAATTGTATTGGTAATTTTTGGTTGATGCCTTGCAAAACTTAAATGATATTTGTGCATGTGAGATTTGCTAGTTCACTTTGAACAAATAGAGGAAGGTGTATGAAAGGTGTGTCTAGATAGTTCTATGTATTGTTATTCTCTCGCACAAATCGAACTTCCAATTTATGTTGGAGCATTTAATTTGATTCAAATTTGATTATGCTTCAAAGTATTCCAATTACGTTTTGAGGACTCATTTTGCTCTATTTGTTAGGATTCATCTCGATGATATATACTAGCATTATCTGTACATAATAGCAGCCATGTCAAAAGGCAATTTTCTACTAATTGTTGTGTTCTTGTCAGCCATGCTTCCTATGTCTCTGTGTGTGTGTTTCTTGCATTTCTTTTTGGAGGGTTGTACAATTGCAAATTGCTAATGTTATAACTGGACTTTACAGCTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTC</genome_strand>
        <mrna_strand>CTCGTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATTGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717802" ref_strand="+" ref_description="SGN-E717802 [FC02DB06]">
      <seq>gggcgattggcggccaatcggccgaattgatggcttcgaagctcgttttgtaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatattaagattgctcgccttcatgcggatttggatccacaaacttcttcaattgaatatcggtgcacaacagctgaaagcctggttgaagaacagagacaattcgatgctgtgattgcgctagaggtgattgagcatgtagcagatcctgctggattctgcaaatcattatcagcgttgaccattcctggtggtgctacagtgatatcaacgattaatcgttcaatgagagcatatgcaacggcaattgttgcagcagagtatctcctacattggcttccaaaaggtacacatcaatggtcaagctttctaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35324" stop="29066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35021" g_stop="34753" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="298" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="388" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="467" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33388" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="545" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33387" i_stop="31999" i_length="1389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31998" g_stop="31950" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="594" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31949" i_stop="30796" i_length="1154">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30795" g_stop="30746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="644" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30745" i_stop="30022" i_length="724">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30021" g_stop="29872" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="794" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29871" i_stop="29407" i_length="465">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29406" g_stop="29366" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="835" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E717802" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35021" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33388"/>
          <exon e_start="31998" e_stop="31950"/>
          <exon e_start="30795" e_stop="30746"/>
          <exon e_start="30021" e_stop="29872"/>
          <exon e_start="29406" e_stop="29366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCGAAGCTCGTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCGGTATGTTTACTTGAATGTTTCCAGGATGCACCATTAAACTGCTGTTTTTTTTTTTGCTTGTCTGGTTAATGTACAGTTTAAGGATCTTCCCATACCTGAGATATCATGAGTATTGGCATCAAAATTTACTAGTCTTATATTGATTCGGAGTTTATTGGTTCCTCACCTTGAGGGACACATACAATTTTGCTTCGTCAAATTATAGTTCATTTGAAGGTCACAGTGCTTATGATGGAAGAAAAGTTAAAAATTTAGAAGGGTTTTGAACTGATAACTTGAATGTTCATTGCCTAATTATAGTTAGTCATACTGACAACAAGTGCAAGAAAAAATTCATACGATGTTTATTCATCTTGGTTCAAATCCTACTTAGAGGTCCACTAGAGATAAAAATATGTTGAAGAAACAAGATCTTTCTTTTGATTCCTTTTAGGCAATTTGAAAATTAAAGAAATGGTCAAAGCCTAGGCATCATCGGGTGGAGATGAATCAATAGATTGGGGTTCATTAGGACCAGTGTCTTGTGCTTCCAGGATAGAAATCCTGTTGTTAGTCTCACAGCCGATGTTGTACATTACTACACATTAGAAGGTCCATGGGTTGGCAAGTTACCTATTTAGTAAAGATAGAACTAGACGTTTTGTATAGATTCTGTTATATTTTAAAGAAAATGGCACAGCTCTTTTTGCCTCTTCCACTGTATGAGTTTTCCTTTTTGCACAAACTGGGAACAAGCCAGATAGTTCCTTTATGCTATTGTTTCCCTGCACTCATATATGCTGTGATGTTCTGGAGCTTCACCGACAAAATTTGCACCAAGGCGTTCCCATGGTTGATATACTAAAACCAAAAGGGTGTAAAGTTAAATCATGTTCAAAAGATCGCATTTAAGTTGCAAAAATACCTAATTTTAGTCCATGTGGCTGTGTTGTCTTGGTATTCAATATAATATGTGTAGGATATTAACTCCTGGTATATGTATTCAACCAATATTATTGACTTCCTTAATTTTTTTTATCCAAAAAAATATTTTCAGTATATCCTTATATATATAATATATGTGCTTGTCCTTCCAACAGCCTAAGCAAAACTCTTGAGCCTGTGTCAAAATTTTCAAGGACTATTGTGTCTTTATGCAACAACAGAAGTTCTAGAACCTACTAGAGCATATTCTCTAAAATAATGTTGTTGATGAAGTAGTTGAAGCAATTTCGTAGAACTAATATACTTTCATTATATACAATGGTAGGATTAGCACATATCTCAGCAATAGATTTGCTGTTTGTTAAGCTAGAGTGCTATTTTAAACAGATAGTTTTTGAATTGTGACAGTCAAACCCGTATACATTCTATATGGTGGATGCTTATGAATGCTGATATTTCTTTCAGGATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTGGTACATGCCATACTTGTTTGATGAGAATTTAGTCCAAATATTGGTGACTTCTATATGTGCATGTTAATCTTTCATCTCGATGTACAATGAACAGACATTATCTTTTCTTTTTTATCATGTTGGTGCCTTCTTTAGTAAAGAATAGGAAAACGAGTCTGCATAACATCGGTTTTTGTTATGAATCATGTTAATGATCAAGCACTGGTTTAATCATGCTCAACTTATCAAATAGAAATGAATTTTTGGCATCTTAGCAAAGCCTCACTTTCTTTCCAAAATAGTTGAAGTGACAGATGACCAACTTGTTGTATGTTATTGCAATCTCCATTTGCAATTTTTATTTGTTGTAGTTCCAATTTAAGCTGCAATAGTGTGAAATTACTGCCGTTTAGTTGCATGAACCATAACAGAGACTCCTAGGGTAATTCATGGTCAATTATTATCACTGGTTAACCTCCTCCTCCTTTATGGAGAGTATGGAAGGTGGGTAATTGGTCATGATTGCATACTAATTAGTTGCAGCTTCATGATAATTCAGCTTTGTAGTTGTTATAACCCCTAATTTCCGTTTTCACTCAACTGTGTGGTTGGTTATTTTCTCGCTGTGAAAACTTAGCTGAATTATCATGTGTTCAATGATTGGAACTGTTTTTGGACTTGCAAAAATATCAGTGTGTGAGATTCCTGGTGAAAAAAAAGATATGTGCTTTGATGATTTTGTGGTGAACTTAGTTGCTTCTGTGTCTGTGATTTAGATTCTTTAGACTCTTTTCTTTGTAGTTATGTCCTCTTTCCTGGAAAAAAAACATATCCATCTCATTTTATAGTAGAAAAAAGACCTTTTTCAAGACAACTTGTGCCTAATTAAGTTACATACCAGCTACTTAAAATGTTAAAGGAAATCATGAATCAAGCTCAAGTGTTTTAGTTATATGGAGATTAGTCTATGTCACAAGGACATGGAATTTTTAATGATTTTGTTCTTGTTTATGTTGTTACGTACTTTTCAGCTATGGTGTATAACAATTTTAGCTATTGACACATCTGTTGATTTGAAGAAAAACGAATTCTCTTGTTTTATTTAAAATCTCAATTTAGTTGAATATCAAAGATTGTTCTTCGAAGAATGACCCTATTGAATGTTATGTCGACAGAAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAGGTATGACTTAATAAGTGATAAGCTAACTTTGTTCAAAGATTTATTATCTTCAGTACAATCCATCTGTTTTAGTAGATTGTACTTATATCATTTGTACCTTTTGCTTTGCAAAACTTCCACTATTTATTTGAAGTTAACATAGTACATTGTATAAAAGGCTTGGTCCTTTAAGCAGTTCTATGCTTTTATAGCTTTGTTGCACTTGCTCAAGTCTAATAACTGGCACCCAGGGGTGTGGTCTAGAGGTCAATGGAGTGGGTGAAAACCTTGGAGAGTAGGAGTCAAATCCTAACAAATACCACAATGCTAGGTGATTTCTTTCTATTTGCTGAAGCCTTTGTGGGCAGAGTTACCTGATTCATGTGCTGGTGAAAGGTTGCAGGTACCCGTTGGAATAATCTAGGTCCTCTTGTAAAAGGTAGCAGGTATCTGTTAGAAAAGTCAAGGTCCGCGCAAGCTTACCTGACCATCTTTTAGAAAGTCTAGTAATTGGAGGCTTTTAGAGCTCTCACAGGTCTGTTACACAGGGACAGATACTGACACAGATGGAGGGATGTATGTGATATGATCTCTTCTAGTATGTGTATCTAAGGAATTCTGACTGGTGATGTAAAAATGTAACAACTGGGGCAATATCGAAGTATTCTAATCTCCCCTCTTAAGAGGACCCAACTTCCGATCTGATCTCTTCTAGTATGTGTATCTTATTCTGCCTCTTTTGTAGGTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGGGTAAATATATTTAGTGGATCTTCTAAATTGTATTGGTAATTTTTGGTTGATGCCTTGCAAAACTTAAATGATATTTGTGCATGTGAGATTTGCTAGTTCACTTTGAACAAATAGAGGAAGGTGTATGAAAGGTGTGTCTAGATAGTTCTATGTATTGTTATTCTCTCGCACAAATCGAACTTCCAATTTATGTTGGAGCATTTAATTTGATTCAAATTTGATTATGCTTCAAAGTATTCCAATTACGTTTTGAGGACTCATTTTGCTCTATTTGTTAGGATTCATCTCGATGATATATACTAGCATTATCTGTACATAATAGCAGCCATGTCAAAAGGCAATTTTCTACTAATTGTTGTGTTCTTGTCAGCCATGCTTCCTATGTCTCTGTGTGTGTGTTTCTTGCATTTCTTTTTGGAGGGTTGTACAATTGCAAATTGCTAATGTTATAACTGGACTTTACAGCTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCC</genome_strand>
        <mrna_strand>ATGGCTTCGAAGCTCGTTTTGTACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699647" ref_strand="+" ref_description="SGN-E699647 [FA10DB12]">
      <seq>catttttcttcatggcttcgaagctcgttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatattaagattgctcgccttcatgcggatttggatccacaaacttcttcaattgaatatcggtgcacaacagctgaaagcctggttgaagaacagagacaattcgatgctgtgattgcgctagaggtgattgagcatgtagcagatcctgctggattctgcaaatcattatcagcgttgaccattcctggtggtgctacagtgatatcaacgattaatcgttcaatgagagcatatgcaacggcaattgttgcagcagagtatctcctacattggcttccaaaaggtacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35332" stop="29570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35032" g_stop="34753" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="370" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="449" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33388" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="527" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33387" i_stop="31999" i_length="1389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31998" g_stop="31950" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="576" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31949" i_stop="30796" i_length="1154">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30795" g_stop="30746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="626" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30745" i_stop="30022" i_length="724">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30021" g_stop="29872" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="776" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E699647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35032" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33388"/>
          <exon e_start="31998" e_stop="31950"/>
          <exon e_start="30795" e_stop="30746"/>
          <exon e_start="30021" e_stop="29872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTCTTCATGGCTTCGAAGCTCGTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCGGTATGTTTACTTGAATGTTTCCAGGATGCACCATTAAACTGCTGTTTTTTTTTTTGCTTGTCTGGTTAATGTACAGTTTAAGGATCTTCCCATACCTGAGATATCATGAGTATTGGCATCAAAATTTACTAGTCTTATATTGATTCGGAGTTTATTGGTTCCTCACCTTGAGGGACACATACAATTTTGCTTCGTCAAATTATAGTTCATTTGAAGGTCACAGTGCTTATGATGGAAGAAAAGTTAAAAATTTAGAAGGGTTTTGAACTGATAACTTGAATGTTCATTGCCTAATTATAGTTAGTCATACTGACAACAAGTGCAAGAAAAAATTCATACGATGTTTATTCATCTTGGTTCAAATCCTACTTAGAGGTCCACTAGAGATAAAAATATGTTGAAGAAACAAGATCTTTCTTTTGATTCCTTTTAGGCAATTTGAAAATTAAAGAAATGGTCAAAGCCTAGGCATCATCGGGTGGAGATGAATCAATAGATTGGGGTTCATTAGGACCAGTGTCTTGTGCTTCCAGGATAGAAATCCTGTTGTTAGTCTCACAGCCGATGTTGTACATTACTACACATTAGAAGGTCCATGGGTTGGCAAGTTACCTATTTAGTAAAGATAGAACTAGACGTTTTGTATAGATTCTGTTATATTTTAAAGAAAATGGCACAGCTCTTTTTGCCTCTTCCACTGTATGAGTTTTCCTTTTTGCACAAACTGGGAACAAGCCAGATAGTTCCTTTATGCTATTGTTTCCCTGCACTCATATATGCTGTGATGTTCTGGAGCTTCACCGACAAAATTTGCACCAAGGCGTTCCCATGGTTGATATACTAAAACCAAAAGGGTGTAAAGTTAAATCATGTTCAAAAGATCGCATTTAAGTTGCAAAAATACCTAATTTTAGTCCATGTGGCTGTGTTGTCTTGGTATTCAATATAATATGTGTAGGATATTAACTCCTGGTATATGTATTCAACCAATATTATTGACTTCCTTAATTTTTTTTATCCAAAAAAATATTTTCAGTATATCCTTATATATATAATATATGTGCTTGTCCTTCCAACAGCCTAAGCAAAACTCTTGAGCCTGTGTCAAAATTTTCAAGGACTATTGTGTCTTTATGCAACAACAGAAGTTCTAGAACCTACTAGAGCATATTCTCTAAAATAATGTTGTTGATGAAGTAGTTGAAGCAATTTCGTAGAACTAATATACTTTCATTATATACAATGGTAGGATTAGCACATATCTCAGCAATAGATTTGCTGTTTGTTAAGCTAGAGTGCTATTTTAAACAGATAGTTTTTGAATTGTGACAGTCAAACCCGTATACATTCTATATGGTGGATGCTTATGAATGCTGATATTTCTTTCAGGATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTGGTACATGCCATACTTGTTTGATGAGAATTTAGTCCAAATATTGGTGACTTCTATATGTGCATGTTAATCTTTCATCTCGATGTACAATGAACAGACATTATCTTTTCTTTTTTATCATGTTGGTGCCTTCTTTAGTAAAGAATAGGAAAACGAGTCTGCATAACATCGGTTTTTGTTATGAATCATGTTAATGATCAAGCACTGGTTTAATCATGCTCAACTTATCAAATAGAAATGAATTTTTGGCATCTTAGCAAAGCCTCACTTTCTTTCCAAAATAGTTGAAGTGACAGATGACCAACTTGTTGTATGTTATTGCAATCTCCATTTGCAATTTTTATTTGTTGTAGTTCCAATTTAAGCTGCAATAGTGTGAAATTACTGCCGTTTAGTTGCATGAACCATAACAGAGACTCCTAGGGTAATTCATGGTCAATTATTATCACTGGTTAACCTCCTCCTCCTTTATGGAGAGTATGGAAGGTGGGTAATTGGTCATGATTGCATACTAATTAGTTGCAGCTTCATGATAATTCAGCTTTGTAGTTGTTATAACCCCTAATTTCCGTTTTCACTCAACTGTGTGGTTGGTTATTTTCTCGCTGTGAAAACTTAGCTGAATTATCATGTGTTCAATGATTGGAACTGTTTTTGGACTTGCAAAAATATCAGTGTGTGAGATTCCTGGTGAAAAAAAAGATATGTGCTTTGATGATTTTGTGGTGAACTTAGTTGCTTCTGTGTCTGTGATTTAGATTCTTTAGACTCTTTTCTTTGTAGTTATGTCCTCTTTCCTGGAAAAAAAACATATCCATCTCATTTTATAGTAGAAAAAAGACCTTTTTCAAGACAACTTGTGCCTAATTAAGTTACATACCAGCTACTTAAAATGTTAAAGGAAATCATGAATCAAGCTCAAGTGTTTTAGTTATATGGAGATTAGTCTATGTCACAAGGACATGGAATTTTTAATGATTTTGTTCTTGTTTATGTTGTTACGTACTTTTCAGCTATGGTGTATAACAATTTTAGCTATTGACACATCTGTTGATTTGAAGAAAAACGAATTCTCTTGTTTTATTTAAAATCTCAATTTAGTTGAATATCAAAGATTGTTCTTCGAAGAATGACCCTATTGAATGTTATGTCGACAGAAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAGGTATGACTTAATAAGTGATAAGCTAACTTTGTTCAAAGATTTATTATCTTCAGTACAATCCATCTGTTTTAGTAGATTGTACTTATATCATTTGTACCTTTTGCTTTGCAAAACTTCCACTATTTATTTGAAGTTAACATAGTACATTGTATAAAAGGCTTGGTCCTTTAAGCAGTTCTATGCTTTTATAGCTTTGTTGCACTTGCTCAAGTCTAATAACTGGCACCCAGGGGTGTGGTCTAGAGGTCAATGGAGTGGGTGAAAACCTTGGAGAGTAGGAGTCAAATCCTAACAAATACCACAATGCTAGGTGATTTCTTTCTATTTGCTGAAGCCTTTGTGGGCAGAGTTACCTGATTCATGTGCTGGTGAAAGGTTGCAGGTACCCGTTGGAATAATCTAGGTCCTCTTGTAAAAGGTAGCAGGTATCTGTTAGAAAAGTCAAGGTCCGCGCAAGCTTACCTGACCATCTTTTAGAAAGTCTAGTAATTGGAGGCTTTTAGAGCTCTCACAGGTCTGTTACACAGGGACAGATACTGACACAGATGGAGGGATGTATGTGATATGATCTCTTCTAGTATGTGTATCTAAGGAATTCTGACTGGTGATGTAAAAATGTAACAACTGGGGCAATATCGAAGTATTCTAATCTCCCCTCTTAAGAGGACCCAACTTCCGATCTGATCTCTTCTAGTATGTGTATCTTATTCTGCCTCTTTTGTAGGTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG</genome_strand>
        <mrna_strand>CATTTTTCTTCATGGCTTCGAAGCTCGTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369929" ref_strand="+" ref_description="SGN-E369929 [TUS-26-B19]">
      <seq>ttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatattaagattgctcgccttcatgcggatttggatccacaaacttcttcaattgaatatcggtgcacaacagctgaaagcctggttgaagaacagagacaattcgatgctgtgattgcgctagaggtgattgagcatgtagcagatcctgctggattctgcaaatcattatcagcgttgaccattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35305" stop="29659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35005" g_stop="34753" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="343" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="422" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33388" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="500" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33387" i_stop="31999" i_length="1389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31998" g_stop="31950" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="549" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31949" i_stop="30796" i_length="1154">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30795" g_stop="30746" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="599" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30745" i_stop="30022" i_length="724">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30021" g_stop="29959" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="662" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E369929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35005" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33388"/>
          <exon e_start="31998" e_stop="31950"/>
          <exon e_start="30795" e_stop="30746"/>
          <exon e_start="30021" e_stop="29959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCGGTATGTTTACTTGAATGTTTCCAGGATGCACCATTAAACTGCTGTTTTTTTTTTTGCTTGTCTGGTTAATGTACAGTTTAAGGATCTTCCCATACCTGAGATATCATGAGTATTGGCATCAAAATTTACTAGTCTTATATTGATTCGGAGTTTATTGGTTCCTCACCTTGAGGGACACATACAATTTTGCTTCGTCAAATTATAGTTCATTTGAAGGTCACAGTGCTTATGATGGAAGAAAAGTTAAAAATTTAGAAGGGTTTTGAACTGATAACTTGAATGTTCATTGCCTAATTATAGTTAGTCATACTGACAACAAGTGCAAGAAAAAATTCATACGATGTTTATTCATCTTGGTTCAAATCCTACTTAGAGGTCCACTAGAGATAAAAATATGTTGAAGAAACAAGATCTTTCTTTTGATTCCTTTTAGGCAATTTGAAAATTAAAGAAATGGTCAAAGCCTAGGCATCATCGGGTGGAGATGAATCAATAGATTGGGGTTCATTAGGACCAGTGTCTTGTGCTTCCAGGATAGAAATCCTGTTGTTAGTCTCACAGCCGATGTTGTACATTACTACACATTAGAAGGTCCATGGGTTGGCAAGTTACCTATTTAGTAAAGATAGAACTAGACGTTTTGTATAGATTCTGTTATATTTTAAAGAAAATGGCACAGCTCTTTTTGCCTCTTCCACTGTATGAGTTTTCCTTTTTGCACAAACTGGGAACAAGCCAGATAGTTCCTTTATGCTATTGTTTCCCTGCACTCATATATGCTGTGATGTTCTGGAGCTTCACCGACAAAATTTGCACCAAGGCGTTCCCATGGTTGATATACTAAAACCAAAAGGGTGTAAAGTTAAATCATGTTCAAAAGATCGCATTTAAGTTGCAAAAATACCTAATTTTAGTCCATGTGGCTGTGTTGTCTTGGTATTCAATATAATATGTGTAGGATATTAACTCCTGGTATATGTATTCAACCAATATTATTGACTTCCTTAATTTTTTTTATCCAAAAAAATATTTTCAGTATATCCTTATATATATAATATATGTGCTTGTCCTTCCAACAGCCTAAGCAAAACTCTTGAGCCTGTGTCAAAATTTTCAAGGACTATTGTGTCTTTATGCAACAACAGAAGTTCTAGAACCTACTAGAGCATATTCTCTAAAATAATGTTGTTGATGAAGTAGTTGAAGCAATTTCGTAGAACTAATATACTTTCATTATATACAATGGTAGGATTAGCACATATCTCAGCAATAGATTTGCTGTTTGTTAAGCTAGAGTGCTATTTTAAACAGATAGTTTTTGAATTGTGACAGTCAAACCCGTATACATTCTATATGGTGGATGCTTATGAATGCTGATATTTCTTTCAGGATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTGGTACATGCCATACTTGTTTGATGAGAATTTAGTCCAAATATTGGTGACTTCTATATGTGCATGTTAATCTTTCATCTCGATGTACAATGAACAGACATTATCTTTTCTTTTTTATCATGTTGGTGCCTTCTTTAGTAAAGAATAGGAAAACGAGTCTGCATAACATCGGTTTTTGTTATGAATCATGTTAATGATCAAGCACTGGTTTAATCATGCTCAACTTATCAAATAGAAATGAATTTTTGGCATCTTAGCAAAGCCTCACTTTCTTTCCAAAATAGTTGAAGTGACAGATGACCAACTTGTTGTATGTTATTGCAATCTCCATTTGCAATTTTTATTTGTTGTAGTTCCAATTTAAGCTGCAATAGTGTGAAATTACTGCCGTTTAGTTGCATGAACCATAACAGAGACTCCTAGGGTAATTCATGGTCAATTATTATCACTGGTTAACCTCCTCCTCCTTTATGGAGAGTATGGAAGGTGGGTAATTGGTCATGATTGCATACTAATTAGTTGCAGCTTCATGATAATTCAGCTTTGTAGTTGTTATAACCCCTAATTTCCGTTTTCACTCAACTGTGTGGTTGGTTATTTTCTCGCTGTGAAAACTTAGCTGAATTATCATGTGTTCAATGATTGGAACTGTTTTTGGACTTGCAAAAATATCAGTGTGTGAGATTCCTGGTGAAAAAAAAGATATGTGCTTTGATGATTTTGTGGTGAACTTAGTTGCTTCTGTGTCTGTGATTTAGATTCTTTAGACTCTTTTCTTTGTAGTTATGTCCTCTTTCCTGGAAAAAAAACATATCCATCTCATTTTATAGTAGAAAAAAGACCTTTTTCAAGACAACTTGTGCCTAATTAAGTTACATACCAGCTACTTAAAATGTTAAAGGAAATCATGAATCAAGCTCAAGTGTTTTAGTTATATGGAGATTAGTCTATGTCACAAGGACATGGAATTTTTAATGATTTTGTTCTTGTTTATGTTGTTACGTACTTTTCAGCTATGGTGTATAACAATTTTAGCTATTGACACATCTGTTGATTTGAAGAAAAACGAATTCTCTTGTTTTATTTAAAATCTCAATTTAGTTGAATATCAAAGATTGTTCTTCGAAGAATGACCCTATTGAATGTTATGTCGACAGAAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAGGTATGACTTAATAAGTGATAAGCTAACTTTGTTCAAAGATTTATTATCTTCAGTACAATCCATCTGTTTTAGTAGATTGTACTTATATCATTTGTACCTTTTGCTTTGCAAAACTTCCACTATTTATTTGAAGTTAACATAGTACATTGTATAAAAGGCTTGGTCCTTTAAGCAGTTCTATGCTTTTATAGCTTTGTTGCACTTGCTCAAGTCTAATAACTGGCACCCAGGGGTGTGGTCTAGAGGTCAATGGAGTGGGTGAAAACCTTGGAGAGTAGGAGTCAAATCCTAACAAATACCACAATGCTAGGTGATTTCTTTCTATTTGCTGAAGCCTTTGTGGGCAGAGTTACCTGATTCATGTGCTGGTGAAAGGTTGCAGGTACCCGTTGGAATAATCTAGGTCCTCTTGTAAAAGGTAGCAGGTATCTGTTAGAAAAGTCAAGGTCCGCGCAAGCTTACCTGACCATCTTTTAGAAAGTCTAGTAATTGGAGGCTTTTAGAGCTCTCACAGGTCTGTTACACAGGGACAGATACTGACACAGATGGAGGGATGTATGTGATATGATCTCTTCTAGTATGTGTATCTAAGGAATTCTGACTGGTGATGTAAAAATGTAACAACTGGGGCAATATCGAAGTATTCTAATCTCCCCTCTTAAGAGGACCCAACTTCCGATCTGATCTCTTCTAGTATGTGTATCTTATTCTGCCTCTTTTGTAGGTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCT</genome_strand>
        <mrna_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255315" ref_strand="+" ref_description="SGN-E255315 [cLEG-30-O1]">
      <seq>ttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgatgaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatattaagattgctcgccttcatgcggatttggatccacaaacttcttcaattgaatatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35305" stop="31664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35005" g_stop="34753" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="343" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="422" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33388" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="500" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33387" i_stop="31999" i_length="1389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31998" g_stop="31964" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="535" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E255315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35005" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33388"/>
          <exon e_start="31998" e_stop="31964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCGGTATGTTTACTTGAATGTTTCCAGGATGCACCATTAAACTGCTGTTTTTTTTTTTGCTTGTCTGGTTAATGTACAGTTTAAGGATCTTCCCATACCTGAGATATCATGAGTATTGGCATCAAAATTTACTAGTCTTATATTGATTCGGAGTTTATTGGTTCCTCACCTTGAGGGACACATACAATTTTGCTTCGTCAAATTATAGTTCATTTGAAGGTCACAGTGCTTATGATGGAAGAAAAGTTAAAAATTTAGAAGGGTTTTGAACTGATAACTTGAATGTTCATTGCCTAATTATAGTTAGTCATACTGACAACAAGTGCAAGAAAAAATTCATACGATGTTTATTCATCTTGGTTCAAATCCTACTTAGAGGTCCACTAGAGATAAAAATATGTTGAAGAAACAAGATCTTTCTTTTGATTCCTTTTAGGCAATTTGAAAATTAAAGAAATGGTCAAAGCCTAGGCATCATCGGGTGGAGATGAATCAATAGATTGGGGTTCATTAGGACCAGTGTCTTGTGCTTCCAGGATAGAAATCCTGTTGTTAGTCTCACAGCCGATGTTGTACATTACTACACATTAGAAGGTCCATGGGTTGGCAAGTTACCTATTTAGTAAAGATAGAACTAGACGTTTTGTATAGATTCTGTTATATTTTAAAGAAAATGGCACAGCTCTTTTTGCCTCTTCCACTGTATGAGTTTTCCTTTTTGCACAAACTGGGAACAAGCCAGATAGTTCCTTTATGCTATTGTTTCCCTGCACTCATATATGCTGTGATGTTCTGGAGCTTCACCGACAAAATTTGCACCAAGGCGTTCCCATGGTTGATATACTAAAACCAAAAGGGTGTAAAGTTAAATCATGTTCAAAAGATCGCATTTAAGTTGCAAAAATACCTAATTTTAGTCCATGTGGCTGTGTTGTCTTGGTATTCAATATAATATGTGTAGGATATTAACTCCTGGTATATGTATTCAACCAATATTATTGACTTCCTTAATTTTTTTTATCCAAAAAAATATTTTCAGTATATCCTTATATATATAATATATGTGCTTGTCCTTCCAACAGCCTAAGCAAAACTCTTGAGCCTGTGTCAAAATTTTCAAGGACTATTGTGTCTTTATGCAACAACAGAAGTTCTAGAACCTACTAGAGCATATTCTCTAAAATAATGTTGTTGATGAAGTAGTTGAAGCAATTTCGTAGAACTAATATACTTTCATTATATACAATGGTAGGATTAGCACATATCTCAGCAATAGATTTGCTGTTTGTTAAGCTAGAGTGCTATTTTAAACAGATAGTTTTTGAATTGTGACAGTCAAACCCGTATACATTCTATATGGTGGATGCTTATGAATGCTGATATTTCTTTCAGGATTTGGATCCACAAACTTCTTCAATTGAATATCG</genome_strand>
        <mrna_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATGAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGATCCACAAACTTCTTCAATTGAATATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259067" ref_strand="+" ref_description="SGN-E259067 [cLEG-41-I10]">
      <seq>ttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatattaagattgctcgccttcatgcggatttggatccacaaacttcttcaattgaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35305" stop="31665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35005" g_stop="34753" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="343" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="422" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33388" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="500" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33387" i_stop="31999" i_length="1389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31998" g_stop="31965" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="534" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E259067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35005" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33388"/>
          <exon e_start="31998" e_stop="31965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCGGTATGTTTACTTGAATGTTTCCAGGATGCACCATTAAACTGCTGTTTTTTTTTTTGCTTGTCTGGTTAATGTACAGTTTAAGGATCTTCCCATACCTGAGATATCATGAGTATTGGCATCAAAATTTACTAGTCTTATATTGATTCGGAGTTTATTGGTTCCTCACCTTGAGGGACACATACAATTTTGCTTCGTCAAATTATAGTTCATTTGAAGGTCACAGTGCTTATGATGGAAGAAAAGTTAAAAATTTAGAAGGGTTTTGAACTGATAACTTGAATGTTCATTGCCTAATTATAGTTAGTCATACTGACAACAAGTGCAAGAAAAAATTCATACGATGTTTATTCATCTTGGTTCAAATCCTACTTAGAGGTCCACTAGAGATAAAAATATGTTGAAGAAACAAGATCTTTCTTTTGATTCCTTTTAGGCAATTTGAAAATTAAAGAAATGGTCAAAGCCTAGGCATCATCGGGTGGAGATGAATCAATAGATTGGGGTTCATTAGGACCAGTGTCTTGTGCTTCCAGGATAGAAATCCTGTTGTTAGTCTCACAGCCGATGTTGTACATTACTACACATTAGAAGGTCCATGGGTTGGCAAGTTACCTATTTAGTAAAGATAGAACTAGACGTTTTGTATAGATTCTGTTATATTTTAAAGAAAATGGCACAGCTCTTTTTGCCTCTTCCACTGTATGAGTTTTCCTTTTTGCACAAACTGGGAACAAGCCAGATAGTTCCTTTATGCTATTGTTTCCCTGCACTCATATATGCTGTGATGTTCTGGAGCTTCACCGACAAAATTTGCACCAAGGCGTTCCCATGGTTGATATACTAAAACCAAAAGGGTGTAAAGTTAAATCATGTTCAAAAGATCGCATTTAAGTTGCAAAAATACCTAATTTTAGTCCATGTGGCTGTGTTGTCTTGGTATTCAATATAATATGTGTAGGATATTAACTCCTGGTATATGTATTCAACCAATATTATTGACTTCCTTAATTTTTTTTATCCAAAAAAATATTTTCAGTATATCCTTATATATATAATATATGTGCTTGTCCTTCCAACAGCCTAAGCAAAACTCTTGAGCCTGTGTCAAAATTTTCAAGGACTATTGTGTCTTTATGCAACAACAGAAGTTCTAGAACCTACTAGAGCATATTCTCTAAAATAATGTTGTTGATGAAGTAGTTGAAGCAATTTCGTAGAACTAATATACTTTCATTATATACAATGGTAGGATTAGCACATATCTCAGCAATAGATTTGCTGTTTGTTAAGCTAGAGTGCTATTTTAAACAGATAGTTTTTGAATTGTGACAGTCAAACCCGTATACATTCTATATGGTGGATGCTTATGAATGCTGATATTTCTTTCAGGATTTGGATCCACAAACTTCTTCAATTGAATATC</genome_strand>
        <mrna_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGATCCACAAACTTCTTCAATTGAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257868" ref_strand="+" ref_description="SGN-E257868 [cLEG-39-L3]">
      <seq>acccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctgagccaactccgataaatcctccaccaccacctactccatcccctaatacttctacaacaacttcaagtgctctcaatgaatttgaactcgccaaattctgtgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattatatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatattaagattgctcgccttcatgcggatttggatccacaaacttcttcaattgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35236" stop="31666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34936" g_stop="34753" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="274" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="353" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33388" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="431" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33387" i_stop="31999" i_length="1389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31998" g_stop="31966" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="464" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E257868" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34936" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33388"/>
          <exon e_start="31998" e_stop="31966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCGGTATGTTTACTTGAATGTTTCCAGGATGCACCATTAAACTGCTGTTTTTTTTTTTGCTTGTCTGGTTAATGTACAGTTTAAGGATCTTCCCATACCTGAGATATCATGAGTATTGGCATCAAAATTTACTAGTCTTATATTGATTCGGAGTTTATTGGTTCCTCACCTTGAGGGACACATACAATTTTGCTTCGTCAAATTATAGTTCATTTGAAGGTCACAGTGCTTATGATGGAAGAAAAGTTAAAAATTTAGAAGGGTTTTGAACTGATAACTTGAATGTTCATTGCCTAATTATAGTTAGTCATACTGACAACAAGTGCAAGAAAAAATTCATACGATGTTTATTCATCTTGGTTCAAATCCTACTTAGAGGTCCACTAGAGATAAAAATATGTTGAAGAAACAAGATCTTTCTTTTGATTCCTTTTAGGCAATTTGAAAATTAAAGAAATGGTCAAAGCCTAGGCATCATCGGGTGGAGATGAATCAATAGATTGGGGTTCATTAGGACCAGTGTCTTGTGCTTCCAGGATAGAAATCCTGTTGTTAGTCTCACAGCCGATGTTGTACATTACTACACATTAGAAGGTCCATGGGTTGGCAAGTTACCTATTTAGTAAAGATAGAACTAGACGTTTTGTATAGATTCTGTTATATTTTAAAGAAAATGGCACAGCTCTTTTTGCCTCTTCCACTGTATGAGTTTTCCTTTTTGCACAAACTGGGAACAAGCCAGATAGTTCCTTTATGCTATTGTTTCCCTGCACTCATATATGCTGTGATGTTCTGGAGCTTCACCGACAAAATTTGCACCAAGGCGTTCCCATGGTTGATATACTAAAACCAAAAGGGTGTAAAGTTAAATCATGTTCAAAAGATCGCATTTAAGTTGCAAAAATACCTAATTTTAGTCCATGTGGCTGTGTTGTCTTGGTATTCAATATAATATGTGTAGGATATTAACTCCTGGTATATGTATTCAACCAATATTATTGACTTCCTTAATTTTTTTTATCCAAAAAAATATTTTCAGTATATCCTTATATATATAATATATGTGCTTGTCCTTCCAACAGCCTAAGCAAAACTCTTGAGCCTGTGTCAAAATTTTCAAGGACTATTGTGTCTTTATGCAACAACAGAAGTTCTAGAACCTACTAGAGCATATTCTCTAAAATAATGTTGTTGATGAAGTAGTTGAAGCAATTTCGTAGAACTAATATACTTTCATTATATACAATGGTAGGATTAGCACATATCTCAGCAATAGATTTGCTGTTTGTTAAGCTAGAGTGCTATTTTAAACAGATAGTTTTTGAATTGTGACAGTCAAACCCGTATACATTCTATATGGTGGATGCTTATGAATGCTGATATTTCTTTCAGGATTTGGATCCACAAACTTCTTCAATTGAATAT</genome_strand>
        <mrna_strand>ACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTGAGCCAACTCCGATAAATCCTCCACCACCACCTACTCCATCCCCTAATACTTCTACAACAACTTCAAGTGCTCTCAATGAATTTGAACTCGCCAAATTCTGTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTATATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGATCCACAAACTTCTTCAATTGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398088" ref_strand="+" ref_description="SGN-E398088 [TUS-42-J8]">
      <seq>gttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgaatgctgtggacaaaaatattaagattgctcgccttcatgcggatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35306" stop="33081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35006" g_stop="34753" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="344" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="423" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33388" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="502" r_length="79" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E398088" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35006" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTG-ATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG</genome_strand>
        <mrna_strand>GTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGAATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394759" ref_strand="+" ref_description="SGN-E394759 [TUS-42-H7]">
      <seq>gttttgaaccgactgatatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggaattgatgctgtggaacaaaatattaagattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35306" stop="33099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35006" g_stop="34753" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="344" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="423" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33399" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="490" r_length="67" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E394759" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35006" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTC</genome_strand>
        <mrna_strand>GTTTTGAACCGACTGATATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAATTGATGCTGTGGAACAAAATATTAAGATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258901" ref_strand="+" ref_description="SGN-E258901 [cLEG-41-K6]">
      <seq>ttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35305" stop="33109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35005" g_stop="34753" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="343" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="422" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33409" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="479" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E258901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35005" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATT</genome_strand>
        <mrna_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370009" ref_strand="+" ref_description="SGN-E370009 [TUS-26-B18]">
      <seq>ttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctgctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgaccctttggctcggaggggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35305" stop="33389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35005" g_stop="34753" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="343" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="422" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33465" g_stop="33446" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="442" r_length="20" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E370009" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35005" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33688"/>
          <exon e_start="33465" e_stop="33446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGC</genome_strand>
        <mrna_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTGCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAC..............................................................................................................................................................................................................................CCTTTGGCTCGGAGGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264591" ref_strand="+" ref_description="SGN-E264591 [cLEG-67-L8]">
      <seq>ttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagacctttttgaagactgaaagttgttgatgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35305" stop="33413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35005" g_stop="34753" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="343" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33766" g_stop="33713" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="397" r_length="54" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E264591" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35005" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
          <exon e_start="33766" e_stop="33713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGG</genome_strand>
        <mrna_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTTGAAGACTGAAAGTTGTTGATGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258955" ref_strand="+" ref_description="SGN-E258955 [cLEG-41-N1]">
      <seq>ttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctgctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35305" stop="33962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35005" g_stop="34753" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34357" g_stop="34268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="343" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E258955" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35005" e_stop="34753"/>
          <exon e_start="34357" e_stop="34268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG</genome_strand>
        <mrna_strand>TTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTGCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394767" ref_strand="+" ref_description="SGN-E394767 [TUS-42-J7]">
      <seq>gttttgaaccgacccctttctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccgaattctctgccattgccgaaacctggagggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="35288" stop="34452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35006" g_stop="34753" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E394767" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35006" e_stop="34753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG</genome_strand>
        <mrna_strand>GTTTTGAACCGACCCCTTTCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCGAATTCTCTGCCATTGCCGAAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377580" ref_strand="+" ref_description="SGN-E377580 [TUS-20-L19]">
      <seq>cgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctattttcttagttaaaatagtctataattttttccccacccaatcagccaagtgttactgttacgatgtctattttaccattggattgtcgtttgtctgtgcctgtggccagattactggtgtttcctactgattttgtttcgttattaataatgcttaacagcttctaatgagtcgatgcaaatcctatcaatttgtaaagtttgtaccatttaaacgtaaaacttatgggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="37637" stop="36195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37337" g_stop="37287" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37125" g_stop="36495" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="682" r_length="631" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E377580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37337" e_stop="37287"/>
          <exon e_start="37125" e_stop="36495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGTCGATGCAAATCCTATCAATTTGTAAAGTTTGTACCATTTAAACGTAAAACTTATGGGTCA</genome_strand>
        <mrna_strand>CGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGTCGATGCAAATCCTATCAATTTGTAAAGTTTGTACCATTTAAACGTAAAACTTATGGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375127" ref_strand="+" ref_description="SGN-E375127 [TUS-36-O19]">
      <seq>cgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctattttcttagttaaaatagtctataattttttccccacccaatcagccaagtgttactgttacgatgtctattttaccattggattgtcgtttgtctgtgcctgtggccagattactggtgtttcctactgattttgtttcgttattaataatgcttaacagcttctaatgagtcgatgcaaatcctatcaatttgtaaagtttgtaccatttaaacgtaaaacttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="37637" stop="36198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37337" g_stop="37287" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37125" g_stop="36498" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="679" r_length="628" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E375127" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37337" e_stop="37287"/>
          <exon e_start="37125" e_stop="36498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGTCGATGCAAATCCTATCAATTTGTAAAGTTTGTACCATTTAAACGTAAAACTTATGGG</genome_strand>
        <mrna_strand>CGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGTCGATGCAAATCCTATCAATTTGTAAAGTTTGTACCATTTAAACGTAAAACTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694927" ref_strand="+" ref_description="SGN-E694927 [LH_Ea05D05](-)">
      <seq>agatttagtggtccgatctcatgaagtgaaggatgaaggttatgagattgagcatgatggcaaactcataacggtgttttccgctcccaattattgtgaccagatgggtaacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaagccaatggcatatgccaacaacttccttcggatgttttcttaaaactctggaacctaacgttcagtattacagtcgatgcgaccttttgtctcactgaccaagagcatacacatgaggaggcagaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcctgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctttacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaagctttgataagtcgaattttggttttttctattttcttagttaaaatagtttataattttttccccaccaaatcagctaagtgttactgttacgatgtctattttaccattggattgtcatttgtctctgtgcccttggccagattactggtgtttccttctgattttgtttcgtgattaataatgcttaacagcttgtaatgagcaaatcctaacgatttgtaaagtttgtaccattaaacgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="38765" stop="36206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38465" g_stop="38363" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38362" i_stop="37362" i_length="1001">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37361" g_stop="37287" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="178" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37125" g_stop="36551" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="753" r_length="575" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="788" polyA_stop="806"/>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E694927" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38465" e_stop="38363"/>
          <exon e_start="37361" e_stop="37287"/>
          <exon e_start="37125" e_stop="36551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAGGTAATTTGTCTCTATGTATTCCCCTCTCAAGAGTTTATTTGAGCTCATCCTACTTTAGTTCAATTAAAATCTCAATTTGCAAGTCAAAAGAACACCTTTGCCTCAAAAGTCCCTCTAGGTTGAAATGTAGCTCTTCATCAAAATCACTGCAGAGTTTTCGGTGTGTATAGATCTTGTATATCTGTGATTTGTCGGCACTGTTGTTAAAGGCGTGCTGAAGCGAGGCTCAATACTTGTTGAGCGATTCGCCTCGCCTCGCCTCAATGTCGTCATCAAGGTTCTACGACATGCTTTTCCTTGCGAATGAGCCTCTTCCGAAGAGGCGAGACAGTTGGCATTTCACTTTATCGTAATCTTTTTGTTCATATATTTGTCATTCATGCTATAACTATTAGTCTTGGACTATATATATATATATATATATTGTTTCTCCCTTTGTGCTTTTTCTTCATTAAAGTTTATGCTTTATTTGAGCTTGAAGTCCCAACGGATCTTAGAGGTTTTTTGCTTTTAATGACACTGTTTATCGGTCAAGTTTAGTATTGACACAACTTGTAGTCCGTTGCTTCATTTAGTATTTTAAAATGATGGGAAATAATGACTTTCTGCTTCAAGGTAGATTTGGAATTTGTTAGATGTTGACTTTGTCAGTAACTTCGATAGATGGTGTTGTGGACATATTTGCACAGATGGCGTGGTGTCCAGTTTCATTGCAAGTCTTGTTTCTTAGCATCTAATATATTTTCAAGTACATAAACTGATTGCAATATGTACAGATATAGTCATAATATTTGCTACTTTTTTGTGACAATTTACGTGGACAAGTCAGTTTTATAGTAACTGGAACTGTGTTATCTATACATTTGTATTCCTGTAGTAGAGAAGGATCTTGTAATAATTTCTTTGTATGACTAATACACTGTTATATCCTATATGAAGTTTCTTTGATGTGAATGGAAATGTTTTATTCAATATCCTCAAATGCACTTCGCTGGTTGCAGATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTG--TCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGTCGAT</genome_strand>
        <mrna_strand>AGATTTAGTGGTCCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGATGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAGCCAATGGCATATGCCAACAACTTCCTTCGGATGTTTTCTT-AAAACTCTGGAACCTAACGTTCAGTATTACAGTCGATGCGACCTTTTGTCTCACTGACCAAGAGCATACACATGAGGAGGCAGAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCTGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTTTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGG-AAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTTTATAATTTTTTCCCCACCAAATCAGCTAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCATTTGTCTCTGTGCCCTTGGCCAGATTACTGGTGTTTCCTTCTGATTTTGTTTCGTGATTAATAATGCTTAACAGCTTGTAATGAGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232056" ref_strand="+" ref_description="SGN-E232056 [cLED-7-D23]">
      <seq>cgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctattttcttagttaaaatagtctataattttttccccacccaatcagccaagtgttactgttacgatgtctattttaccattggattgtcgtttgtctgtgcctgtggccagattactggtgtttcctactggatttgtttcgttattaataatgcttaacagcttcttatgagtcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="37637" stop="36252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37337" g_stop="37287" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37125" g_stop="36552" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="625" r_length="574" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E232056" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37337" e_stop="37287"/>
          <exon e_start="37125" e_stop="36552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGTCGA</genome_strand>
        <mrna_strand>CGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGGATTTGTTTCGTTATTAATAATGCTTAACAGCTTCTTATGAGTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238136" ref_strand="+" ref_description="SGN-E238136 [cLED-22-F18]">
      <seq>aacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctattttcttagttaaaatagtctataattttttccccacccaatcagccaagtgttactgttacgatgtctattttaccattggattgtcgtttgtctgtgcctgtggccagattactggtgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="37655" stop="36304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37355" g_stop="37287" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37125" g_stop="36604" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="591" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E238136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37355" e_stop="37287"/>
          <exon e_start="37125" e_stop="36604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTC</genome_strand>
        <mrna_strand>AACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237886" ref_strand="+" ref_description="SGN-E237886 [cLED-18-L4]">
      <seq>aacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctattttcttagttaaaatagtctataattttttccccacccaatcagccaagtgttactgttacgatgtctattttaccattggattgtcgtttgtctgtgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="37655" stop="36325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37355" g_stop="37287" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37125" g_stop="36625" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="570" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E237886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37355" e_stop="37287"/>
          <exon e_start="37125" e_stop="36625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTG</genome_strand>
        <mrna_strand>AACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238072" ref_strand="+" ref_description="SGN-E238072 [cLED-22-K19]">
      <seq>aacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctattttcttagttaaaatagtctataattttttccccacccaatcagccaagtgttactgttacgatgtctattttaccattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="37655" stop="36345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37355" g_stop="37287" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37125" g_stop="36645" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="550" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E238072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37355" e_stop="37287"/>
          <exon e_start="37125" e_stop="36645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGA</genome_strand>
        <mrna_strand>AACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390545" ref_strand="+" ref_description="SGN-E390545 [TUS-44-C19]">
      <seq>acgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttanaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctattttcttagttaaaatagtctataattttttccccacccaatcagccaagtgttactgttacaatgtctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="37638" stop="36357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37338" g_stop="37287" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37125" g_stop="36657" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="521" r_length="469" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E390545" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37338" e_stop="37287"/>
          <exon e_start="37125" e_stop="36657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTAT</genome_strand>
        <mrna_strand>ACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTANAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACAATGTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238224" ref_strand="+" ref_description="SGN-E238224 [cLED-22-G18]">
      <seq>aacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctattttcttagttaaaatagtctataatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="37655" stop="36397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37355" g_stop="37287" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37125" g_stop="36697" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="498" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E238224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37355" e_stop="37287"/>
          <exon e_start="37125" e_stop="36697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTT</genome_strand>
        <mrna_strand>AACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237493" ref_strand="+" ref_description="SGN-E237493 [cLED-19-E22]">
      <seq>aacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="37655" stop="36423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37355" g_stop="37287" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37125" g_stop="36723" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="472" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E237493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37355" e_stop="37287"/>
          <exon e_start="37125" e_stop="36723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTC</genome_strand>
        <mrna_strand>AACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746743" ref_strand="+" ref_description="SGN-E746743 [GI|27820118]">
      <seq>gtctcagtcttctttgacaaacccccaaagcgccataaaaagagtattcatgaaaattccagtattgtgacttcgcacgcaacatctactcagccagcctccagtcgccattgttatgcccggtatggaagctgagaactcaaacgcctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcgattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcgtttgctcacaccaaattggaggaatatggaagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggagaggagctgcatatttggcaatggggaagttcaaagatgcactcaaggattttcaacaggtcaagaaattatgtccaaacgacccagatgctaccaaaaaattgaaggaatgtgagaaagctgtcatgaagctaaaatttgaagaagctatttctgtcccagaatctcagaggcgttcagtagctgactctattgattatcgttctgtagaggtggagcctcaatatgctggtgcaagaatagagggagatgttgtaacattagattttgtgaagaagatgctggatgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatcggttttgtgagcccccagaagaggggttaatgtgtgaattgttgtggagtgatccacaacctcagcctggtagaggacctagtaaacgaggtgttggtctttctttcgggggagacgtaactaaaagattcttgcaggaaaataatctagatttagtggtgcgatctcatgaagtgaaggatgaaggttatgagattgagcatgacggcaaactcataacggtgttttccgctcccaattattgtgaccagatgggtaacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="46848" stop="36428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46548" g_stop="46355" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46354" i_stop="46271" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46270" g_stop="46101" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="364" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46100" i_stop="46016" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46015" g_stop="45944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="436" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45943" i_stop="45351" i_length="593">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45350" g_stop="45200" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="587" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45199" i_stop="42412" i_length="2788">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42411" g_stop="42303" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="696" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42221" g_stop="42104" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="814" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40487" g_stop="40340" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="962" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39483" g_stop="39235" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="963" r_stop="1211" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="39234" i_stop="38722" i_length="513">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="38721" g_stop="38596" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1212" r_stop="1337" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="38595" i_stop="38464" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="38463" g_stop="38363" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1338" r_stop="1438" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="38362" i_stop="37362" i_length="1001">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="37361" g_stop="37287" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1439" r_stop="1513" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="37125" g_stop="36729" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1514" r_stop="1910" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1911" polyA_stop="1946"/>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E746743" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1910</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46548" e_stop="46355"/>
          <exon e_start="46270" e_stop="46101"/>
          <exon e_start="46015" e_stop="45944"/>
          <exon e_start="45350" e_stop="45200"/>
          <exon e_start="42411" e_stop="42303"/>
          <exon e_start="42221" e_stop="42104"/>
          <exon e_start="40487" e_stop="40340"/>
          <exon e_start="39483" e_stop="39235"/>
          <exon e_start="38721" e_stop="38596"/>
          <exon e_start="38463" e_stop="38363"/>
          <exon e_start="37361" e_stop="37287"/>
          <exon e_start="37125" e_stop="36729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGGGTAAGTTCTGATGCAAGTAGAGAATTGTACATGTATGATGTCCTTTCAATATGCTATATCTATACTAATTATTCTGCTTTAAGCTTCTTAATGCTCCATTAATCGTCTGATAAACTCTTCAAACAAAGCTCGGAAAAACTATTCATGCAAGTTTGTGTATCAGAACTACCATTCTCATTTGCTCGGTAGTTATCATCATTACACATTATTTCTGCAAGCCACTTTCTTGATACATGCTAATAAATACTTTTGAGTCCAGACACGACTATTATTTTGAAATAAAGGCAACTATTCTGGTCTTTATCGATGCTTTTGTTGGCCAAACAAATTGAAACTTTCTGCATTTCTGCTTGATCTCAGTTAGTATTAATGTATTGACTTACTTCTTTGATAAGTCATCATCAGTTTTCTGACTTATTAAATATATGTTGCTTATTTCTTTTTTACCTTGGTCGTACATAATAAACATCACCAAGTTGTTTAGGACCTTAGGTTTCATTTGATCTCTTTCAGGGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAGGTACTAATCTTTTTCTTTCTCCCTTATTCTGTTGTTTGACCATGTAGAGAATTGACATTTCACTGTCTATTTTTATTCACTTAATGGATTTTAGCACAAATATTTGATGTTGACATGTGTGGGTGCTTGCAGATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAGGTAATTTGTCTCTATGTATTCCCCTCTCAAGAGTTTATTTGAGCTCATCCTACTTTAGTTCAATTAAAATCTCAATTTGCAAGTCAAAAGAACACCTTTGCCTCAAAAGTCCCTCTAGGTTGAAATGTAGCTCTTCATCAAAATCACTGCAGAGTTTTCGGTGTGTATAGATCTTGTATATCTGTGATTTGTCGGCACTGTTGTTAAAGGCGTGCTGAAGCGAGGCTCAATACTTGTTGAGCGATTCGCCTCGCCTCGCCTCAATGTCGTCATCAAGGTTCTACGACATGCTTTTCCTTGCGAATGAGCCTCTTCCGAAGAGGCGAGACAGTTGGCATTTCACTTTATCGTAATCTTTTTGTTCATATATTTGTCATTCATGCTATAACTATTAGTCTTGGACTATATATATATATATATATATTGTTTCTCCCTTTGTGCTTTTTCTTCATTAAAGTTTATGCTTTATTTGAGCTTGAAGTCCCAACGGATCTTAGAGGTTTTTTGCTTTTAATGACACTGTTTATCGGTCAAGTTTAGTATTGACACAACTTGTAGTCCGTTGCTTCATTTAGTATTTTAAAATGATGGGAAATAATGACTTTCTGCTTCAAGGTAGATTTGGAATTTGTTAGATGTTGACTTTGTCAGTAACTTCGATAGATGGTGTTGTGGACATATTTGCACAGATGGCGTGGTGTCCAGTTTCATTGCAAGTCTTGTTTCTTAGCATCTAATATATTTTCAAGTACATAAACTGATTGCAATATGTACAGATATAGTCATAATATTTGCTACTTTTTTGTGACAATTTACGTGGACAAGTCAGTTTTATAGTAACTGGAACTGTGTTATCTATACATTTGTATTCCTGTAGTAGAGAAGGATCTTGTAATAATTTCTTTGTATGACTAATACACTGTTATATCCTATATGAAGTTTCTTTGATGTGAATGGAAATGTTTTATTCAATATCCTCAAATGCACTTCGCTGGTTGCAGATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCT</genome_strand>
        <mrna_strand>GTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACACCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG....................................................................................................................................ATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746456" ref_strand="+" ref_description="SGN-E746456 [GI|47104998]">
      <seq>gattcatgaaaattccagtattgtgacttcgcacgcaacatctactcagccagcctccagtcgccattgttatgcccggtatggaagctgagaactcaaacgcctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcgattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcgtttgctcacaccaaattggaggaatatggaagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggagaggagctgcatatttggcaatggggaagttcaaagatgcactcaaggattttcaacaggtcaagaaattatgtccaaacgacccagatgctaccaaaaaattgaaggaatgtgagaaagctgtcatgaagctaaaatttgaagaagctatttctgtcccagaatctcagaggcgttcagtagctgactctattgattatcgttctgtaggatcaggccctggctcatcatatgttcccaccaaaacaactgctgtatcagcggcagcagcactaatgtgagttctggtggtatatatggggactaaggcagccacaatggtggcagcagcagcttcggcagccttattggtggtcttgataacatttctttggggacgttgcagtgatggtttctttaccaagagtcgaacacttgaattagaggtggagcctcaatatgctggtgcaagaatagagggagatgttgtaacattagattttgtgaagaagatgctggatgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatcggttttgtgagcccccagaagaggggttaatgtgtgaattgttgtggagtgatccacaacctcagcctggtagaggacctagtaaacgaggtgttggtctttctttcgggggagacgtaactaaaagattcttgcaggaaaataatctagatttagtggtgcgatctcatgaagtgaaggatgaaggttatgagattgagcatgacggcaaactcataacggtgttttccgctcccaattattgtgaccagatgggtaacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="46803" stop="36431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46504" g_stop="46355" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46354" i_stop="46271" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46270" g_stop="46101" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="320" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46100" i_stop="46016" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46015" g_stop="45944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="392" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45943" i_stop="45351" i_length="593">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45350" g_stop="45200" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="543" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45199" i_stop="44227" i_length="973">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44226" g_stop="44014" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="756" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44013" i_stop="42412" i_length="1602">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42411" g_stop="42303" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="865" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42221" g_stop="42104" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="866" r_stop="983" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40487" g_stop="40340" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="984" r_stop="1131" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="39483" g_stop="39235" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1132" r_stop="1380" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="39234" i_stop="38722" i_length="513">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="38721" g_stop="38596" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1381" r_stop="1506" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="38595" i_stop="38464" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="38463" g_stop="38363" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1507" r_stop="1607" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="38362" i_stop="37362" i_length="1001">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="37361" g_stop="37287" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1608" r_stop="1682" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="37125" g_stop="36731" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1683" r_stop="2077" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2078" polyA_stop="2092"/>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E746456" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2077</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46504" e_stop="46355"/>
          <exon e_start="46270" e_stop="46101"/>
          <exon e_start="46015" e_stop="45944"/>
          <exon e_start="45350" e_stop="45200"/>
          <exon e_start="44226" e_stop="44014"/>
          <exon e_start="42411" e_stop="42303"/>
          <exon e_start="42221" e_stop="42104"/>
          <exon e_start="40487" e_stop="40340"/>
          <exon e_start="39483" e_stop="39235"/>
          <exon e_start="38721" e_stop="38596"/>
          <exon e_start="38463" e_stop="38363"/>
          <exon e_start="37361" e_stop="37287"/>
          <exon e_start="37125" e_stop="36731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGGGTAAGTTCTGATGCAAGTAGAGAATTGTACATGTATGATGTCCTTTCAATATGCTATATCTATACTAATTATTCTGCTTTAAGCTTCTTAATGCTCCATTAATCGTCTGATAAACTCTTCAAACAAAGCTCGGAAAAACTATTCATGCAAGTTTGTGTATCAGAACTACCATTCTCATTTGCTCGGTAGTTATCATCATTACACATTATTTCTGCAAGCCACTTTCTTGATACATGCTAATAAATACTTTTGAGTCCAGACACGACTATTATTTTGAAATAAAGGCAACTATTCTGGTCTTTATCGATGCTTTTGTTGGCCAAACAAATTGAAACTTTCTGCATTTCTGCTTGATCTCAGTTAGTATTAATGTATTGACTTACTTCTTTGATAAGTCATCATCAGTTTTCTGACTTATTAAATATATGTTGCTTATTTCTTTTTTACCTTGGTCGTACATAATAAACATCACCAAGTTGTTTAGGACCTTAGGTTTCATTTGATCTCTTTCAGGGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAGGTACTAATCTTTTTCTTTCTCCCTTATTCTGTTGTTTGACCATGTAGAGAATTGACATTTCACTGTCTATTTTTATTCACTTAATGGATTTTAGCACAAATATTTGATGTTGACATGTGTGGGTGCTTGCAGATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAGGTAATTTGTCTCTATGTATTCCCCTCTCAAGAGTTTATTTGAGCTCATCCTACTTTAGTTCAATTAAAATCTCAATTTGCAAGTCAAAAGAACACCTTTGCCTCAAAAGTCCCTCTAGGTTGAAATGTAGCTCTTCATCAAAATCACTGCAGAGTTTTCGGTGTGTATAGATCTTGTATATCTGTGATTTGTCGGCACTGTTGTTAAAGGCGTGCTGAAGCGAGGCTCAATACTTGTTGAGCGATTCGCCTCGCCTCGCCTCAATGTCGTCATCAAGGTTCTACGACATGCTTTTCCTTGCGAATGAGCCTCTTCCGAAGAGGCGAGACAGTTGGCATTTCACTTTATCGTAATCTTTTTGTTCATATATTTGTCATTCATGCTATAACTATTAGTCTTGGACTATATATATATATATATATATTGTTTCTCCCTTTGTGCTTTTTCTTCATTAAAGTTTATGCTTTATTTGAGCTTGAAGTCCCAACGGATCTTAGAGGTTTTTTGCTTTTAATGACACTGTTTATCGGTCAAGTTTAGTATTGACACAACTTGTAGTCCGTTGCTTCATTTAGTATTTTAAAATGATGGGAAATAATGACTTTCTGCTTCAAGGTAGATTTGGAATTTGTTAGATGTTGACTTTGTCAGTAACTTCGATAGATGGTGTTGTGGACATATTTGCACAGATGGCGTGGTGTCCAGTTTCATTGCAAGTCTTGTTTCTTAGCATCTAATATATTTTCAAGTACATAAACTGATTGCAATATGTACAGATATAGTCATAATATTTGCTACTTTTTTGTGACAATTTACGTGGACAAGTCAGTTTTATAGTAACTGGAACTGTGTTATCTATACATTTGTATTCCTGTAGTAGAGAAGGATCTTGTAATAATTTCTTTGTATGACTAATACACTGTTATATCCTATATGAAGTTTCTTTGATGTGAATGGAAATGTTTTATTCAATATCCTCAAATGCACTTCGCTGGTTGCAGATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTT</genome_strand>
        <mrna_strand>GATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACACCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGTGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG....................................................................................................................................ATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238211" ref_strand="+" ref_description="SGN-E238211 [cLED-22-A16]">
      <seq>aacaagggtgcttttataccatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggatttgcctctgtattatttatattcctctttgtaagattggtacacttctcatttcttttagaatgttcaaattgggaaaagctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="37655" stop="36452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37355" g_stop="37287" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37125" g_stop="36752" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="443" r_length="374" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E238211" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37355" e_stop="37287"/>
          <exon e_start="37125" e_stop="36752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGA</genome_strand>
        <mrna_strand>AACAAGGGTGCTTTTATACCATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTTGCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGGTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747532" ref_strand="+" ref_description="SGN-E747532 [GI|28141003]">
      <seq>atgcccggtatggaagctgagaactcaaacgcctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcgattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcgtttgctcacaccaaattggaggaatatggaagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggagaggagctgcatatttggcaatggggaagttcaaagatgcactcaaggattttcaacaggtcaagaaattatgtccaaacgacccagatgctaccaaaaaattgaaggaatgtgagaaagctgtcatgaagctaaaatttgaagaagctatttctgtcccagaatctcagaggcgttcagtagctgactctattgattatcgttctgtaggatcaggccctggctcatcatatgttcccaccaaaacaactgctgtatcagcggcagcagcactaatgggagttctggtggtatatatggggactaaggcagccacaatggtggcagcagcagcttcggcagccttattggtggtcttgataacatttctttggggacgttgcagtgatggtttctttaccaagagtcgaacacttgaattagaggtggagcctcaatatgctggtgcaagaatagagggagatgttgtaacattagattttgtgaagaagatgctggatgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatcggttttgtgagcccccagaagaggggttaatgtgtgaattgttgtggagtgatccacaacctcagcctggtagaggacctagtaaacgaggtgttggtctttctttcgggggagacgtaactaaaagattcttgcaggaaaataatctagatttagtggtgcgatctcatgaagtgaaggatgaaggttatgagattgagcatgacggcaaactcataacggtgttttccgctcccaattattgtgaccagatgggtaacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="46733" stop="36766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46433" g_stop="46355" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46354" i_stop="46271" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46270" g_stop="46101" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="249" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46100" i_stop="46016" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46015" g_stop="45944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="321" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45943" i_stop="45351" i_length="593">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45350" g_stop="45200" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="472" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45199" i_stop="44227" i_length="973">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44226" g_stop="44014" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="685" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44013" i_stop="42412" i_length="1602">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42411" g_stop="42303" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="794" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42221" g_stop="42104" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="912" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40487" g_stop="40340" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="913" r_stop="1060" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="39483" g_stop="39235" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1061" r_stop="1309" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="39234" i_stop="38722" i_length="513">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="38721" g_stop="38596" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1310" r_stop="1435" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="38595" i_stop="38464" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="38463" g_stop="38363" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1436" r_stop="1536" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="38362" i_stop="37362" i_length="1001">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="37361" g_stop="37287" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1537" r_stop="1611" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="37125" g_stop="37066" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1612" r_stop="1671" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E747532" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46433" e_stop="46355"/>
          <exon e_start="46270" e_stop="46101"/>
          <exon e_start="46015" e_stop="45944"/>
          <exon e_start="45350" e_stop="45200"/>
          <exon e_start="44226" e_stop="44014"/>
          <exon e_start="42411" e_stop="42303"/>
          <exon e_start="42221" e_stop="42104"/>
          <exon e_start="40487" e_stop="40340"/>
          <exon e_start="39483" e_stop="39235"/>
          <exon e_start="38721" e_stop="38596"/>
          <exon e_start="38463" e_stop="38363"/>
          <exon e_start="37361" e_stop="37287"/>
          <exon e_start="37125" e_stop="37066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGGGTAAGTTCTGATGCAAGTAGAGAATTGTACATGTATGATGTCCTTTCAATATGCTATATCTATACTAATTATTCTGCTTTAAGCTTCTTAATGCTCCATTAATCGTCTGATAAACTCTTCAAACAAAGCTCGGAAAAACTATTCATGCAAGTTTGTGTATCAGAACTACCATTCTCATTTGCTCGGTAGTTATCATCATTACACATTATTTCTGCAAGCCACTTTCTTGATACATGCTAATAAATACTTTTGAGTCCAGACACGACTATTATTTTGAAATAAAGGCAACTATTCTGGTCTTTATCGATGCTTTTGTTGGCCAAACAAATTGAAACTTTCTGCATTTCTGCTTGATCTCAGTTAGTATTAATGTATTGACTTACTTCTTTGATAAGTCATCATCAGTTTTCTGACTTATTAAATATATGTTGCTTATTTCTTTTTTACCTTGGTCGTACATAATAAACATCACCAAGTTGTTTAGGACCTTAGGTTTCATTTGATCTCTTTCAGGGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAGGTACTAATCTTTTTCTTTCTCCCTTATTCTGTTGTTTGACCATGTAGAGAATTGACATTTCACTGTCTATTTTTATTCACTTAATGGATTTTAGCACAAATATTTGATGTTGACATGTGTGGGTGCTTGCAGATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAGGTAATTTGTCTCTATGTATTCCCCTCTCAAGAGTTTATTTGAGCTCATCCTACTTTAGTTCAATTAAAATCTCAATTTGCAAGTCAAAAGAACACCTTTGCCTCAAAAGTCCCTCTAGGTTGAAATGTAGCTCTTCATCAAAATCACTGCAGAGTTTTCGGTGTGTATAGATCTTGTATATCTGTGATTTGTCGGCACTGTTGTTAAAGGCGTGCTGAAGCGAGGCTCAATACTTGTTGAGCGATTCGCCTCGCCTCGCCTCAATGTCGTCATCAAGGTTCTACGACATGCTTTTCCTTGCGAATGAGCCTCTTCCGAAGAGGCGAGACAGTTGGCATTTCACTTTATCGTAATCTTTTTGTTCATATATTTGTCATTCATGCTATAACTATTAGTCTTGGACTATATATATATATATATATATTGTTTCTCCCTTTGTGCTTTTTCTTCATTAAAGTTTATGCTTTATTTGAGCTTGAAGTCCCAACGGATCTTAGAGGTTTTTTGCTTTTAATGACACTGTTTATCGGTCAAGTTTAGTATTGACACAACTTGTAGTCCGTTGCTTCATTTAGTATTTTAAAATGATGGGAAATAATGACTTTCTGCTTCAAGGTAGATTTGGAATTTGTTAGATGTTGACTTTGTCAGTAACTTCGATAGATGGTGTTGTGGACATATTTGCACAGATGGCGTGGTGTCCAGTTTCATTGCAAGTCTTGTTTCTTAGCATCTAATATATTTTCAAGTACATAAACTGATTGCAATATGTACAGATATAGTCATAATATTTGCTACTTTTTTGTGACAATTTACGTGGACAAGTCAGTTTTATAGTAACTGGAACTGTGTTATCTATACATTTGTATTCCTGTAGTAGAGAAGGATCTTGTAATAATTTCTTTGTATGACTAATACACTGTTATATCCTATATGAAGTTTCTTTGATGTGAATGGAAATGTTTTATTCAATATCCTCAAATGCACTTCGCTGGTTGCAGATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAA</genome_strand>
        <mrna_strand>ATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACACCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG....................................................................................................................................ATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691087" ref_strand="+" ref_description="SGN-E691087 [LH_Ea05D05]">
      <seq>cgttgaagggaagcacttcactgtatgtggtgatgtacatgccctgttttatgacctcctaaatattttcgagctccatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagagggcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatcggttttgtgagcccccagaagaggggttaatgtgtgaattgttgtggagtgatccacaacctcagcctggtagaggacctagtaaacgaggtgttggtctttctttcgggggagacgtaactaaaagattcctgcaggaaaataatctagatttagtggtccgatctcatgaagtgaaggatgaaggttatgagattgagcatgatggcaaactcataacggtgttttccgctcccaattattgtgaccagatgggtaacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaagccaatggcatatgccaacaacttccttcggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="42445" stop="36776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42149" g_stop="42104" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616">
            <donor d_prob="0.999" d_score="0.85"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40487" g_stop="40340" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="194" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39483" g_stop="39235" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="443" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39234" i_stop="38722" i_length="513">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38721" g_stop="38596" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="569" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38595" i_stop="38464" i_length="132">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38463" g_stop="38363" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="670" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38362" i_stop="37362" i_length="1001">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37361" g_stop="37287" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="745" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37125" g_stop="37080" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="791" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E691087" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42149" e_stop="42104"/>
          <exon e_start="40487" e_stop="40340"/>
          <exon e_start="39483" e_stop="39235"/>
          <exon e_start="38721" e_stop="38596"/>
          <exon e_start="38463" e_stop="38363"/>
          <exon e_start="37361" e_stop="37287"/>
          <exon e_start="37125" e_stop="37080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGGGTAAGTTCTGATGCAAGTAGAGAATTGTACATGTATGATGTCCTTTCAATATGCTATATCTATACTAATTATTCTGCTTTAAGCTTCTTAATGCTCCATTAATCGTCTGATAAACTCTTCAAACAAAGCTCGGAAAAACTATTCATGCAAGTTTGTGTATCAGAACTACCATTCTCATTTGCTCGGTAGTTATCATCATTACACATTATTTCTGCAAGCCACTTTCTTGATACATGCTAATAAATACTTTTGAGTCCAGACACGACTATTATTTTGAAATAAAGGCAACTATTCTGGTCTTTATCGATGCTTTTGTTGGCCAAACAAATTGAAACTTTCTGCATTTCTGCTTGATCTCAGTTAGTATTAATGTATTGACTTACTTCTTTGATAAGTCATCATCAGTTTTCTGACTTATTAAATATATGTTGCTTATTTCTTTTTTACCTTGGTCGTACATAATAAACATCACCAAGTTGTTTAGGACCTTAGGTTTCATTTGATCTCTTTCAGGGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAGGTACTAATCTTTTTCTTTCTCCCTTATTCTGTTGTTTGACCATGTAGAGAATTGACATTTCACTGTCTATTTTTATTCACTTAATGGATTTTAGCACAAATATTTGATGTTGACATGTGTGGGTGCTTGCAGATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAGGTAATTTGTCTCTATGTATTCCCCTCTCAAGAGTTTATTTGAGCTCATCCTACTTTAGTTCAATTAAAATCTCAATTTGCAAGTCAAAAGAACACCTTTGCCTCAAAAGTCCCTCTAGGTTGAAATGTAGCTCTTCATCAAAATCACTGCAGAGTTTTCGGTGTGTATAGATCTTGTATATCTGTGATTTGTCGGCACTGTTGTTAAAGGCGTGCTGAAGCGAGGCTCAATACTTGTTGAGCGATTCGCCTCGCCTCGCCTCAATGTCGTCATCAAGGTTCTACGACATGCTTTTCCTTGCGAATGAGCCTCTTCCGAAGAGGCGAGACAGTTGGCATTTCACTTTATCGTAATCTTTTTGTTCATATATTTGTCATTCATGCTATAACTATTAGTCTTGGACTATATATATATATATATATATTGTTTCTCCCTTTGTGCTTTTTCTTCATTAAAGTTTATGCTTTATTTGAGCTTGAAGTCCCAACGGATCTTAGAGGTTTTTTGCTTTTAATGACACTGTTTATCGGTCAAGTTTAGTATTGACACAACTTGTAGTCCGTTGCTTCATTTAGTATTTTAAAATGATGGGAAATAATGACTTTCTGCTTCAAGGTAGATTTGGAATTTGTTAGATGTTGACTTTGTCAGTAACTTCGATAGATGGTGTTGTGGACATATTTGCACAGATGGCGTGGTGTCCAGTTTCATTGCAAGTCTTGTTTCTTAGCATCTAATATATTTTCAAGTACATAAACTGATTGCAATATGTACAGATATAGTCATAATATTTGCTACTTTTTTGTGACAATTTACGTGGACAAGTCAGTTTTATAGTAACTGGAACTGTGTTATCTATACATTTGTATTCCTGTAGTAGAGAAGGATCTTGTAATAATTTCTTTGTATGACTAATACACTGTTATATCCTATATGAAGTTTCTTTGATGTGAATGGAAATGTTTTATTCAATATCCTCAAATGCACTTCGCTGGTTGCAGATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTC</genome_strand>
        <mrna_strand>CGTTGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGCCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCCATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGGCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCCTGCAGGAAAATAATCTAG....................................................................................................................................ATTTAGTGGTCCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGATGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAGCCAATGGCATATGCCAACAACTTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273782" ref_strand="+" ref_description="SGN-E273782 [cLEN-7-L11]">
      <seq>agacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatcggttttgtgagcccccagaagaggggttaatgtgtgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="40740" stop="38929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40440" g_stop="40340" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39483" g_stop="39235" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="350" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E273782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40440" e_stop="40340"/>
          <exon e_start="39483" e_stop="39235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG</genome_strand>
        <mrna_strand>AGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306449" ref_strand="+" ref_description="SGN-E306449 [cLEX-13-E21]">
      <seq>tgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="42635" stop="38959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42335" g_stop="42303" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42221" g_stop="42104" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="151" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40487" g_stop="40340" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="299" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39483" g_stop="39259" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="524" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E306449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42335" e_stop="42303"/>
          <exon e_start="42221" e_stop="42104"/>
          <exon e_start="40487" e_stop="40340"/>
          <exon e_start="39483" e_stop="39259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATC</genome_strand>
        <mrna_strand>TGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268448" ref_strand="+" ref_description="SGN-E268448 [cLEI-13-H22]">
      <seq>aaattatgtccaaacgacccagatgctaccaaaaaattgaaggaatgtgagaaagctgtcatgaagctaaaatgtgaagaagctatttctgtcccagaatctcagaggcgttcagtagctgactctattgattatcgttctgtagaggtggagcctcaatatgctggtgcaagaatagagggagatgttgtaacattagattttgtgaagaagatgctggatgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattggtgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccggatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacgttatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="45644" stop="39162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45344" g_stop="45200" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45199" i_stop="42412" i_length="2788">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42411" g_stop="42303" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="254" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42221" g_stop="42104" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="372" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40487" g_stop="40340" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="520" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39483" g_stop="39462" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="542" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E268448" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45344" e_stop="45200"/>
          <exon e_start="42411" e_stop="42303"/>
          <exon e_start="42221" e_stop="42104"/>
          <exon e_start="40487" e_stop="40340"/>
          <exon e_start="39483" e_stop="39462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAA</genome_strand>
        <mrna_strand>AAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATGTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGGTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGGATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACGTTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737986" ref_strand="+" ref_description="SGN-E737986 [LC11DG03]">
      <seq>gcccggtatggaagctgagaactcaaacgcctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcgattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcgtttgctcactccaaattggaggaatatggaagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggagaggagctgcatatttggcaatggggaagttcaaagatgcactcaaggattttcaacaggtcaagaaattatgtccaaacgacccagatgctaccaaaaaattgaaggaatgtgagaaagctgtcatgaagctaaaatttgaagaagctatttctgtcccagaatctcagaggcgttcagtagctgactctattgattatcgttctgtagaggtggagcctcaatatgctggtgcaagaatagagggagatgttgtaacattagattttgtgaagaagatgctggatgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="46731" stop="41802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46431" g_stop="46355" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46354" i_stop="46271" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46270" g_stop="46101" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="247" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46100" i_stop="46016" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46015" g_stop="45944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="319" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45943" i_stop="45351" i_length="593">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45350" g_stop="45200" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="470" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45199" i_stop="42412" i_length="2788">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42411" g_stop="42303" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="579" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42221" g_stop="42104" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="697" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E737986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46431" e_stop="46355"/>
          <exon e_start="46270" e_stop="46101"/>
          <exon e_start="46015" e_stop="45944"/>
          <exon e_start="45350" e_stop="45200"/>
          <exon e_start="42411" e_stop="42303"/>
          <exon e_start="42221" e_stop="42104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG</genome_strand>
        <mrna_strand>GCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269640" ref_strand="+" ref_description="SGN-E269640 [cLEM-2-H12]">
      <seq>caagctattgatctgtacacacaagcgattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcgtttgctcactccaaattggaggaatatggaagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggagaggagctgcatatttggcaatggggaagttcaaagatgcactcaaggattttcaacaggtcaagaaattatgtccaaacgacccagatgctaccaaaaaattgaaggaatgtgagaaagctgtcatgaagctaaaatttgaagaagctatttctgtcccagaatctcagaggcgttcagtagctgactctattgattatcgttctgtagaggtggagcctcaatatgctggtgcaagaatagagggagatgttgtaacattagattttgtgaagaagatgctggatgacttcaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="46556" stop="42022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46256" g_stop="46101" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46100" i_stop="46016" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46015" g_stop="45944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="228" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45943" i_stop="45351" i_length="593">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45350" g_stop="45200" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="379" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45199" i_stop="42412" i_length="2788">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42411" g_stop="42322" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="469" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E269640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46256" e_stop="46101"/>
          <exon e_start="46015" e_stop="45944"/>
          <exon e_start="45350" e_stop="45200"/>
          <exon e_start="42411" e_stop="42322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACC</genome_strand>
        <mrna_strand>CAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291259" ref_strand="+" ref_description="SGN-E291259 [cLET-2-L10]">
      <seq>cgccataaaaagagtattcatgaaaattccagtattgtgacttcgcacgcaacatctactcagccagcctccagtcgccattgttatgcccggtatggaagctgagaactcaaacgcctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcgattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcgtttgctcactccaaattggaggaatatggaagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggagaggagctgcatatttggcaatggggaagttcaaagatgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="-" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="46818" stop="45659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46518" g_stop="46355" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46354" i_stop="46271" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46270" g_stop="46101" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="334" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46100" i_stop="46016" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46015" g_stop="45959" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="391" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="-" ref_id="SGN-E291259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46518" e_stop="46355"/>
          <exon e_start="46270" e_stop="46101"/>
          <exon e_start="46015" e_stop="45959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTC</genome_strand>
        <mrna_strand>CGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552363" ref_strand="+" ref_description="SGN-E552363 [cTSB-3-K5]">
      <seq>ggttattctttttttaatcaatgacctcttatagctgcacgaaagcaaaaaaatgaaaaataaaataaaaggaagcttggaggaaagaatacccgcaaatgtctttgttttattaatttatagctacatgaagagaaaaaagtatttataagctagtagaagaagtacaaacaaatacatattcaggtttggcctttaaaccctctgttatgggaggaactttggaacaaaaagtgaagaaaattcctgtaacattccttccatagtctctctgggaaattgattatcaacacttgcctatctgttcattatagtctctctgggatattgattatcaacacttgcctatctgttcattcttactgccatgtttattattgtaacaaatgaggaatgttgtgtttgtactgttttaaactatatatgaaaacaaaaggatagtctcgtgcgctaacctctcgttacttaggggtccagggaagggctggaaccatattgggtatatgtacacaatcttactacttggcatttcagtaagaagttgtttccacagcttgaaacaatgactttgtggttgcagtacaccacttatcattgtgccaagcccaccttctattaaatcatctttgaatgaacgcaaaaatatattttgacttcaatcagtgcccaatgtagtcaacttggcattcttcacaagtttttgtacagtgtgtgagcttcatgaccactttctcagcttctaattgtgttacttgcaggcatgggcacttaatttttttcagaaactgaaggccgtcttgaagtttgatcattcaaattcaaagagtcactggtctcgccccaccttctgatgagatgtgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="56743" stop="58206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57043" g_stop="57906" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="864" r_length="864" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E552363" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57043" e_stop="57906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTCTTTTTTTAATCAATGACCTCTTATAGCTGCACGAAAGCAAAAAAATGAAAAATAAAATAAAAGGAAGCTTGGAGGAAAGAATACCCGCAAATGTCTTTGTTTTATTAATTTATAGCTACATGAAGAGAAAAAAGTATTTATAAGCTAGTAGAAGAAGTACAAACAAATACATATTCAGGTTTGGCCTTTAAACCCTCTGTTATGGGAGGAACTTTGGAACAAAAAGTGAAGAAAATTCCTGTAACATTCCTTCCATAGTCTCTCTGGGAAATTGATTATCAACACTTGCCTATCTGTTCATTATAGTCTCTCTGGGATATTGATTATCAACACTTGCCTATCTGTTCATTCTTACTGCCATGTTTATTATTGTAACAAATGAGGAATGTTGTGTTTGTACTGTTTTAAACTATATATGAAAACAAAAGGATAGTCTCGTGCGCTAACCTCTCGTTACTTAGGGGTCCAGGGAAGGGCTGGAACCATATTGGGTATATGTACACAATCTTACTACTTGGCATTTCAGTAAGAAGTTGTTTCCACAGCTTGAAACAATGACTTTGTGGTTGCAGTACACCACTTATCATTGTGCCAAGCCCACCTTCTATTAAATCATCTTTGAATGAACGCAAAAATATATTTTGACTTCAATCAGTGCCCAATGTAGTCAACTTGGCATTCTTCACAAGTTTTTGTACAGTGTGTGAGCTTCATGACCACTTTCTCAGCTTCTAATTGTGTTACTTGCAGGCATGGGCACTTAATTTTTTTCAGAAACTGAAGGCCGTCTTGAAGTTTGATCATTCAAATTCAAAGAGTCACTGGTCTCGCCCAACCTTCTGATGAGATGTGCTTG</genome_strand>
        <mrna_strand>GGTTATTCTTTTTTTAATCAATGACCTCTTATAGCTGCACGAAAGCAAAAAAATGAAAAATAAAATAAAAGGAAGCTTGGAGGAAAGAATACCCGCAAATGTCTTTGTTTTATTAATTTATAGCTACATGAAGAGAAAAAAGTATTTATAAGCTAGTAGAAGAAGTACAAACAAATACATATTCAGGTTTGGCCTTTAAACCCTCTGTTATGGGAGGAACTTTGGAACAAAAAGTGAAGAAAATTCCTGTAACATTCCTTCCATAGTCTCTCTGGGAAATTGATTATCAACACTTGCCTATCTGTTCATTATAGTCTCTCTGGGATATTGATTATCAACACTTGCCTATCTGTTCATTCTTACTGCCATGTTTATTATTGTAACAAATGAGGAATGTTGTGTTTGTACTGTTTTAAACTATATATGAAAACAAAAGGATAGTCTCGTGCGCTAACCTCTCGTTACTTAGGGGTCCAGGGAAGGGCTGGAACCATATTGGGTATATGTACACAATCTTACTACTTGGCATTTCAGTAAGAAGTTGTTTCCACAGCTTGAAACAATGACTTTGTGGTTGCAGTACACCACTTATCATTGTGCCAAGCCCACCTTCTATTAAATCATCTTTGAATGAACGCAAAAATATATTTTGACTTCAATCAGTGCCCAATGTAGTCAACTTGGCATTCTTCACAAGTTTTTGTACAGTGTGTGAGCTTCATGACCACTTTCTCAGCTTCTAATTGTGTTACTTGCAGGCATGGGCACTTAATTTTTTTCAGAAACTGAAGGCCGTCTTGAAGTTTGATCATTCAAATTCAAAGAGTCACTGGTCTCGCCCCACCTTCTGATGAGATGTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552705" ref_strand="+" ref_description="SGN-E552705 [cTSB-4-M15]">
      <seq>ggttattctttttttaatcaatgacctcttatagctgcacgaaagcaaaaaaatgaaaaataaaataaaaggaagcttggaggaaagaatacccgcaaatgtctttgttttattaatttatagctacatgaagagaaaaaagtatttataagctagtagaagaagtacaaacaaatacatattcaggtttggcctttaaaccctctgttatgggaggaactttggaacaaaaagtgaagaaaattcctgtaacattccttccatagtctctctgggaaattgattatcaacacttgcctatctgttcattatagtctctctgggatattgattatcaacacttgcctatctgttcattcttactgccatgtttattattgtaacaaatgaggaatgttgtgtttgtactgttttaaactatatatgaaaacaaaaggatagtctcgtgcgctaacctctcgttacttaggggtccagggaagggctggaaccatattgggtatatgtacacaatcttactacttggcatttcagtaagaagttgtttccacagcttgaaacaatgactttgtggttgcagtacaccacttatcattgtgccaagcccaccttctattaaatcatctttgaatgaacgcaaaaatatattttgacttcaatcagtgcccaatgtagtcaacttggcattcttcacaagtttttgtacagtgtgtgagcttcatgaccactttctcagcttctaattgtgttacttgcaggcatgggcacttaatttttttcagaaactgaaggccgtcttgaagtttgatcattcaattcaaagagtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0095F20-d9grM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLe0095F20.1" temp_strand="+" temp_description="C07SLe0095F20.1  AC232633.2 htgs_phase:2 submitted_to_sgn_as:gi|209977160|gb|AC232633.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0095F20, *** SEQUENCING IN PROGRESS ***">
        <position start="56743" stop="58173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57043" g_stop="57873" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0095F20.1" gen_strand="+" ref_id="SGN-E552705" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0095F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57043" e_stop="57873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTCTTTTTTTAATCAATGACCTCTTATAGCTGCACGAAAGCAAAAAAATGAAAAATAAAATAAAAGGAAGCTTGGAGGAAAGAATACCCGCAAATGTCTTTGTTTTATTAATTTATAGCTACATGAAGAGAAAAAAGTATTTATAAGCTAGTAGAAGAAGTACAAACAAATACATATTCAGGTTTGGCCTTTAAACCCTCTGTTATGGGAGGAACTTTGGAACAAAAAGTGAAGAAAATTCCTGTAACATTCCTTCCATAGTCTCTCTGGGAAATTGATTATCAACACTTGCCTATCTGTTCATTATAGTCTCTCTGGGATATTGATTATCAACACTTGCCTATCTGTTCATTCTTACTGCCATGTTTATTATTGTAACAAATGAGGAATGTTGTGTTTGTACTGTTTTAAACTATATATGAAAACAAAAGGATAGTCTCGTGCGCTAACCTCTCGTTACTTAGGGGTCCAGGGAAGGGCTGGAACCATATTGGGTATATGTACACAATCTTACTACTTGGCATTTCAGTAAGAAGTTGTTTCCACAGCTTGAAACAATGACTTTGTGGTTGCAGTACACCACTTATCATTGTGCCAAGCCCACCTTCTATTAAATCATCTTTGAATGAACGCAAAAATATATTTTGACTTCAATCAGTGCCCAATGTAGTCAACTTGGCATTCTTCACAAGTTTTTGTACAGTGTGTGAGCTTCATGACCACTTTCTCAGCTTCTAATTGTGTTACTTGCAGGCATGGGCACTTAATTTTTTTCAGAAACTGAAGGCCGTCTTGAAGTTTGATCATTCAAATTCAAAGAGTCACT</genome_strand>
        <mrna_strand>GGTTATTCTTTTTTTAATCAATGACCTCTTATAGCTGCACGAAAGCAAAAAAATGAAAAATAAAATAAAAGGAAGCTTGGAGGAAAGAATACCCGCAAATGTCTTTGTTTTATTAATTTATAGCTACATGAAGAGAAAAAAGTATTTATAAGCTAGTAGAAGAAGTACAAACAAATACATATTCAGGTTTGGCCTTTAAACCCTCTGTTATGGGAGGAACTTTGGAACAAAAAGTGAAGAAAATTCCTGTAACATTCCTTCCATAGTCTCTCTGGGAAATTGATTATCAACACTTGCCTATCTGTTCATTATAGTCTCTCTGGGATATTGATTATCAACACTTGCCTATCTGTTCATTCTTACTGCCATGTTTATTATTGTAACAAATGAGGAATGTTGTGTTTGTACTGTTTTAAACTATATATGAAAACAAAAGGATAGTCTCGTGCGCTAACCTCTCGTTACTTAGGGGTCCAGGGAAGGGCTGGAACCATATTGGGTATATGTACACAATCTTACTACTTGGCATTTCAGTAAGAAGTTGTTTCCACAGCTTGAAACAATGACTTTGTGGTTGCAGTACACCACTTATCATTGTGCCAAGCCCACCTTCTATTAAATCATCTTTGAATGAACGCAAAAATATATTTTGACTTCAATCAGTGCCCAATGTAGTCAACTTGGCATTCTTCACAAGTTTTTGTACAGTGTGTGAGCTTCATGACCACTTTCTCAGCTTCTAATTGTGTTACTTGCAGGCATGGGCACTTAATTTTTTTCAGAAACTGAAGGCCGTCTTGAAGTTTGATCATTC-AATTCAAAGAGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>68</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4163" PGL_stop="4692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4163" e_stop="4692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="4163" e_stop="4692" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4163" stop="4692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACAGGAAAATTTGGTCTTGAAGGATTTTAACATTGCCAATGAGGCTGGTGGGCCTGGTAAGGCCATTGTGAAGACGTTCACTGTAAATGTGACAAGCCACACACTGAAAATCCATTTTTACTGGGCAGGAAAGGGGACTACAGGAATTCCATTTAGAGGGGTTTATGGTCCTCTAATTTCAGCTATATCAGTTGTTAATAGTATGTTCCTTTACTCTCTTCAAGTTTATATATCTGTCTTGCTTACAATTGTATGCTCAATTCTTTTTAAATGAATGAACATTGGACATTATTCTTATGTACTAGTCCTTAGAAAAAACTTTCCGAGACCAAATGACTCTATATACCAAGGCTTAATAAGTTTTGGTTGACCATCTTGATGTTATAAATTCTATTCCTACTGATTCATTATGCATCTAAAACCGCTGTCAACATATTCTTTAGGAAGTTTATGTGTATCCGAACCTAAGAAACTTCATATACCCTTGAATTTCATGATGCATTTCGAATACAGTGGGGAGACCACTTA</gDNA_template>
            <first_frame> R  Q  E  N  L  V  L  K  D  F  N  I  A  N  E  A  G  G  P  G  K  A  I  V  K  T  F  T  V  N  V  T  S  H  T  L  K  I  H  F  Y  W  A  G  K  G  T  T  G  I  P  F  R  G  V  Y  G  P  L  I  S  A  I  S  V  V  N  S  M  F  L  Y  S  L  Q  V  Y  I  S  V  L  L  T  I  V  C  S  I  L  F  K  *  M  N  I  G  H  Y  S  Y  V  L  V  L  R  K  N  F  P  R  P  N  D  S  I  Y  Q  G  L  I  S  F  G  *  P  S  *  C  Y  K  F  Y  S  Y  *  F  I  M  H  L  K  P  L  S  T  Y  S  L  G  S  L  C  V  S  E  P  K  K  L  H  I  P  L  N  F  M  M  H  F  E  Y  S  G  E  T  T   </first_frame>
            <second_frame>  D  R  K  I  W  S  *  R  I  L  T  L  P  M  R  L  V  G  L  V  R  P  L  *  R  R  S  L  *  M  *  Q  A  T  H  *  K  S  I  F  T  G  Q  E  R  G  L  Q  E  F  H  L  E  G  F  M  V  L  *  F  Q  L  Y  Q  L  L  I  V  C  S  F  T  L  F  K  F  I  Y  L  S  C  L  Q  L  Y  A  Q  F  F  L  N  E  *  T  L  D  I  I  L  M  Y  *  S  L  E  K  T  F  R  D  Q  M  T  L  Y  T  K  A  *  *  V  L  V  D  H  L  D  V  I  N  S  I  P  T  D  S  L  C  I  *  N  R  C  Q  H  I  L  *  E  V  Y  V  Y  P  N  L  R  N  F  I  Y  P  *  I  S  *  C  I  S  N  T  V  G  R  P  L  </second_frame>
            <third_frame>   T  G  K  F  G  L  E  G  F  *  H  C  Q  *  G  W  W  A  W  *  G  H  C  E  D  V  H  C  K  C  D  K  P  H  T  E  N  P  F  L  L  G  R  K  G  D  Y  R  N  S  I  *  R  G  L  W  S  S  N  F  S  Y  I  S  C  *  *  Y  V  P  L  L  S  S  S  L  Y  I  C  L  A  Y  N  C  M  L  N  S  F  *  M  N  E  H  W  T  L  F  L  C  T  S  P  *  K  K  L  S  E  T  K  *  L  Y  I  P  R  L  N  K  F  W  L  T  I  L  M  L  *  I  L  F  L  L  I  H  Y  A  S  K  T  A  V  N  I  F  F  R  K  F  M  C  I  R  T  *  E  T  S  Y  T  L  E  F  H  D  A  F  R  I  Q  W  G  D  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4163" stop="4438"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQENLVLKDFNIANEAGGPGKAIVKTFTVNVTSHTLKIHFYWAGKGTTGIPFRGVYGPLISAISVVNSMFLYSLQVYISVLLTIVCSILFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7874" PGL_stop="8145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7874" e_stop="8145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="7874" e_stop="8145" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7874" stop="8145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7874" stop="8145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7875" stop="8145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGATGTCCTTTCTGATCCAGGGATTTCAACAAGCGGTTCAGGATTCAGATCAACGAGAAGTCACTTCTGGCAAAATCAAAGCCTAACTAATGGTACGCTTACTGATTCCACTCTCTCAACTGGAATTGCGGAAGAAATTGGCATTCTTCAAAGAGTAGAGCCTAATGTATCTAACAGTTAAAACAAAATGTCTGTTAACACAAGCAAGTGTATATATGAACATCAAAATGTTTAATGAATATGAAGTTTATTCTTTTACAAAACTGCTT</gDNA_template>
            <first_frame> S  R  C  P  F  *  S  R  D  F  N  K  R  F  R  I  Q  I  N  E  K  S  L  L  A  K  S  K  P  N  *  W  Y  A  Y  *  F  H  S  L  N  W  N  C  G  R  N  W  H  S  S  K  S  R  A  *  C  I  *  Q  L  K  Q  N  V  C  *  H  K  Q  V  Y  I  *  T  S  K  C  L  M  N  M  K  F  I  L  L  Q  N  C   </first_frame>
            <second_frame>  Q  D  V  L  S  D  P  G  I  S  T  S  G  S  G  F  R  S  T  R  S  H  F  W  Q  N  Q  S  L  T  N  G  T  L  T  D  S  T  L  S  T  G  I  A  E  E  I  G  I  L  Q  R  V  E  P  N  V  S  N  S  *  N  K  M  S  V  N  T  S  K  C  I  Y  E  H  Q  N  V  *  *  I  *  S  L  F  F  Y  K  T  A  </second_frame>
            <third_frame>   K  M  S  F  L  I  Q  G  F  Q  Q  A  V  Q  D  S  D  Q  R  E  V  T  S  G  K  I  K  A  *  L  M  V  R  L  L  I  P  L  S  Q  L  E  L  R  K  K  L  A  F  F  K  E  *  S  L  M  Y  L  T  V  K  T  K  C  L  L  T  Q  A  S  V  Y  M  N  I  K  M  F  N  E  Y  E  V  Y  S  F  T  K  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0095F20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14507" PGL_stop="19978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14507" e_stop="14747"/>
            <exon e_start="17398" e_stop="17616"/>
            <exon e_start="17696" e_stop="17833"/>
            <exon e_start="17972" e_stop="18050"/>
            <exon e_start="18576" e_stop="18644"/>
            <exon e_start="18751" e_stop="18826"/>
            <exon e_start="19159" e_stop="19215"/>
            <exon e_start="19293" e_stop="19978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.907" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.552" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="14507" e_stop="14747" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14748" i_stop="17397" i_length="2650"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17398" e_stop="17616" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.907" acc_prob="0.958">
            <gDNA_intron_boundary i_start="17617" i_stop="17695" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17696" e_stop="17833" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.959">
            <gDNA_intron_boundary i_start="17834" i_stop="17971" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17972" e_stop="18050" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18051" i_stop="18575" i_length="525"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18576" e_stop="18644" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="18645" i_stop="18750" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18751" e_stop="18826" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="18827" i_stop="19158" i_length="332"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19159" e_stop="19215" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.552">
            <gDNA_intron_boundary i_start="19216" i_stop="19292" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19293" e_stop="19978" e_length="686"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14507" stop="14747"/>
              <exon start="17398" stop="17616"/>
              <exon start="17696" stop="17833"/>
              <exon start="17972" stop="18015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14507" stop="14747"/>
              <exon start="17398" stop="17616"/>
              <exon start="17696" stop="17833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14557" stop="14747"/>
              <exon start="17398" stop="17608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14592" stop="14747"/>
              <exon start="17398" stop="17616"/>
              <exon start="17696" stop="17785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17411" stop="17616"/>
              <exon start="17696" stop="17833"/>
              <exon start="17972" stop="18048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17742" stop="17833"/>
              <exon start="17972" stop="18050"/>
              <exon start="18576" stop="18644"/>
              <exon start="18751" stop="18826"/>
              <exon start="19159" stop="19215"/>
              <exon start="19293" stop="19773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18798" stop="18826"/>
              <exon start="19159" stop="19215"/>
              <exon start="19293" stop="19859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18798" stop="18826"/>
              <exon start="19159" stop="19215"/>
              <exon start="19293" stop="19696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19399" stop="19978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19507" stop="19950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19516" stop="19950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19554" stop="19943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19574" stop="19943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGCGCTGAAACGCTTCCGATAGTCTTTTTGGGATATAACAAACCTCTGTTCGCCGTCTTCCATCAATCGATCGATTTTTAATTTTTTGTGTTTCCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCG : GTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAA : GGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAG : GCGAAGACACAGGAAATGGAGGAAACTCAACAAAGATCATTTGAAAGAATCAAGGAATTGTACCAAAACGAAAATGCCA : AACGGCAAAGCCGACAAGTTCAAGTCTGCACAAAGGTTCCCCCTTCTAGCAATAAAAGAAGCTTTTATG : GTAGTGGACTTGGTAGCAATTTTGGGAACACAAAGAGTCCGTTGATGAAGAAGGCAAAAATAGAGTTTGTCAACAG : TCGAGAAGTAAAGAATTTAGCTGCTATGAAGAATAAGTCTGTGCAAAGAAATCATAG : CCAAGTTTCTTCTATTAAGAAACCAGGTAGTTTTGTTTCTTCTCAAGAAAGAGGCAGAGGATATGAGCCTGACACCACAGCTAGGCGTGGTTCCTCCACATATCCTGACACCGCAGCTAAGCGTGGTTCCTCCACATATCCTGACAGCGCAGCTAGGCGTGGTTCCTCCACATATCATGACACCGCAGCTAGGCATGGTTCCTCCACATATCCTGACGCTGCAGCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAATATAATCCATTTTTGGACATTATTACATTATACTTA</gDNA_template>
            <first_frame> H  A  L  K  R  F  R  *  S  F  W  D  I  T  N  L  C  S  P  S  S  I  N  R  S  I  F  N  F  L  C  F  R  *  I  F  R  C  V  A  V  F  K  L  D  R  N  S  S  S  F  I  P  S  P  T  N  S  I  I  I  F  Q  I  F  D  H  R  R  R  S  G  E  F  Q  L  R  S  H  S   : G  V  S  W  P  E  *  I  E  A  R  T  E  T  *  K  A  F  Y  N  E  V  *  G  S  F  A  G  R  F  M  C  S  D  S  S  R  *  F  E  V  P  W  G  C  G  *  N  R  H  L  S  T  R  A  H  F  A  S  L  F  S  *  T  I  D  T  C  G  E  F  D  R   : R  K  R  S  Q  S  S  D  *  *  T  L  E  E  V  L  P  D  *  V  W  *  Q  E  H  Q  S  G  G  *  A  N  E  A  S  E  S  N  I  *  M  E  T  V  I  *   : G  E  D  T  G  N  G  G  N  S  T  K  I  I  *  K  N  Q  G  I  V  P  K  R  K  C  Q :   T  A  K  P  T  S  S  S  L  H  K  G  S  P  F  *  Q  *  K  K  L  L  W :   *  W  T  W  *  Q  F  W  E  H  K  E  S  V  D  E  E  G  K  N  R  V  C  Q  Q  :  S  R  S  K  E  F  S  C  Y  E  E  *  V  C  A  K  K  S  *  :  P  S  F  F  Y  *  E  T  R  *  F  C  F  F  S  R  K  R  Q  R  I  *  A  *  H  H  S  *  A  W  F  L  H  I  S  *  H  R  S  *  A  W  F  L  H  I  S  *  Q  R  S  *  A  W  F  L  H  I  S  *  H  R  S  *  A  W  F  L  H  I  S  *  R  C  S  *  A  W  F  L  H  L  S  *  H  R  S  E  A  C  S  L  H  I  S  *  Y  H  N  *  A  W  F  L  P  H  G  F  V  S  K  I  E  I  Y  *  P  V  G  E  K  L  G  W  H  F  M  Y  Q  S  W  L  L  K  G  N  A  E  R  C  V  F  R  Y  M  K  A  Q  L  C  K  F  Y  K  T  P  E  S  A  T  L  Q  F  S  *  N  V  W  R  A  P  Y  I  I  L  N  I  M  F  N  P  *  F  C  K  *  C  S  W  I  C  C  *  G  G  Y  S  V  L  *  T  T  L  W  M  L  *  Y  I  G  L  L  D  N  D  T  N  I  I  H  F  W  T  L  L  H  Y  T   </first_frame>
            <second_frame>  T  R  *  N  A  S  D  S  L  F  G  I  *  Q  T  S  V  R  R  L  P  S  I  D  R  F  L  I  F  C  V  S  D  E  S  S  D  A  L  Q  F  L  N  S  I  G  I  Q  V  P  L  S  L  P  L  Q  I  Q  L  L  F  F  R  Y  L  I  I  G  V  G  Q  A  N  S  S  S  D  H  I  P  :  V  *  A  G  Q  N  R  L  K  H  V  L  R  H  K  R  R  F  T  M  R  C  K  V  P  S  L  V  D  L  C  V  R  T  A  V  D  N  L  R  Y  L  G  D  V  G  E  T  D  T  Y  L  L  E  R  I  L  P  H  C  S  L  E  Q  L  T  H  V  E  N  S  T  E  :  G  R  D  L  S  Q  V  T  D  R  L  W  K  R  F  Y  Q  I  E  F  G  D  K  S  I  N  Q  V  V  E  R  M  K  Q  V  K  V  T  F  K  W  K  Q  L  Y  E  :  A  K  T  Q  E  M  E  E  T  Q  Q  R  S  F  E  R  I  K  E  L  Y  Q  N  E  N  A   : K  R  Q  S  R  Q  V  Q  V  C  T  K  V  P  P  S  S  N  K  R  S  F  Y   : G  S  G  L  G  S  N  F  G  N  T  K  S  P  L  M  K  K  A  K  I  E  F  V  N  S :   R  E  V  K  N  L  A  A  M  K  N  K  S  V  Q  R  N  H  S :   Q  V  S  S  I  K  K  P  G  S  F  V  S  S  Q  E  R  G  R  G  Y  E  P  D  T  T  A  R  R  G  S  S  T  Y  P  D  T  A  A  K  R  G  S  S  T  Y  P  D  S  A  A  R  R  G  S  S  T  Y  H  D  T  A  A  R  H  G  S  S  T  Y  P  D  A  A  A  R  R  G  S  S  T  Y  P  D  T  A  A  R  R  V  P  S  T  Y  P  D  T  T  T  R  L  G  S  S  P  M  A  S  S  A  R  S  K  F  T  S  R  *  E  R  S  *  A  G  I  L  C  I  K  A  G  C  *  K  E  M  L  S  G  V  S  S  A  T  *  K  R  S  C  V  N  S  I  K  R  L  K  V  Q  L  C  N  F  R  K  T  F  G  V  L  R  I  S  Y  L  T  L  C  S  I  H  D  S  A  N  S  A  L  G  F  V  V  K  V  D  I  R  F  C  K  Q  R  F  G  C  Y  N  I  L  V  Y  *  I  M  I  Q  I  *  S  I  F  G  H  Y  Y  I  I  L  </second_frame>
            <third_frame>   R  A  E  T  L  P  I  V  F  L  G  Y  N  K  P  L  F  A  V  F  H  Q  S  I  D  F  *  F  F  V  F  P  M  N  L  P  M  R  C  S  F  *  T  R  S  E  F  K  F  L  Y  P  F  P  Y  K  F  N  Y  Y  F  S  D  I  *  S  S  A  S  V  R  R  I  P  A  P  I  T  F  R :   C  E  L  A  R  I  D  *  S  T  Y  *  D  I  K  G  V  L  Q  *  G  V  R  F  L  R  W  *  I  Y  V  F  G  Q  Q  *  I  I  *  G  T  L  G  M  W  V  K  Q  T  L  I  Y  *  S  A  F  C  L  T  V  L  L  N  N  *  H  M  W  R  I  R  Q  K :   E  E  I  S  V  K  *  L  I  D  F  G  R  G  F  T  R  L  S  L  V  T  R  A  S  I  R  W  L  S  E  *  S  K  *  K  *  H  L  N  G  N  S  Y  M  R :   R  R  H  R  K  W  R  K  L  N  K  D  H  L  K  E  S  R  N  C  T  K  T  K  M  P  :  N  G  K  A  D  K  F  K  S  A  Q  R  F  P  L  L  A  I  K  E  A  F  M  :  V  V  D  L  V  A  I  L  G  T  Q  R  V  R  *  *  R  R  Q  K  *  S  L  S  T   : V  E  K  *  R  I  *  L  L  *  R  I  S  L  C  K  E  I  I   : A  K  F  L  L  L  R  N  Q  V  V  L  F  L  L  K  K  E  A  E  D  M  S  L  T  P  Q  L  G  V  V  P  P  H  I  L  T  P  Q  L  S  V  V  P  P  H  I  L  T  A  Q  L  G  V  V  P  P  H  I  M  T  P  Q  L  G  M  V  P  P  H  I  L  T  L  Q  L  G  V  V  P  P  P  I  L  T  P  Q  R  G  V  F  P  P  H  I  L  I  P  Q  L  G  L  V  P  P  P  W  L  R  Q  Q  D  R  N  L  L  A  G  R  R  E  V  R  L  A  F  Y  V  S  K  L  A  V  E  R  K  C  *  A  V  C  L  P  L  H  E  S  A  V  V  *  I  L  *  N  A  *  K  C  N  S  A  I  F  V  K  R  L  A  C  S  V  Y  H  T  *  H  Y  V  Q  S  M  I  L  Q  I  V  L  L  D  L  L  L  R  W  I  F  G  F  V  N  N  A  L  D  V  I  I  Y  W  S  I  R  *  *  Y  K  Y  N  P  F  L  D  I  I  T  L  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17404" stop="17616"/>
                    <exon start="17696" stop="17833"/>
                    <exon start="17972" stop="18050"/>
                    <exon start="18576" stop="18644"/>
                    <exon start="18751" stop="18826"/>
                    <exon start="19159" stop="19215"/>
                    <exon start="19293" stop="19647"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGQNRLKHVLRHKRRFTMRCKVPSLVDLCVRTAVDNLRYLGDVGETDTYLLERILPHCSLEQLTHVENSTEGRDLSQVTDRLWKRFYQIEFGDKSINQVVERMKQVKVTFKWKQLYEAKTQEMEETQQRSFERIKELYQNENAKRQSRQVQVCTKVPPSSNKRSFYGSGLGSNFGNTKSPLMKKAKIEFVNSREVKNLAAMKNKSVQRNHSQVSSIKKPGSFVSSQERGRGYEPDTTARRGSSTYPDTAAKRGSSTYPDSAARRGSSTYHDTAARHGSSTYPDAAARRGSSTYPDTAARRVPSTYPDTTTRLGSSPMASSARSKFTSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14547" stop="14747"/>
                    <exon start="17398" stop="17403"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTSVRRLPSIDRFLIFCVSDESSDALQFLNSIGIQVPLSLPLQIQLLFFRYLIIGVGQANSSSDHIPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19729" stop="19929"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRSCVNSIKRLKVQLCNFRKTFGVLRISYLTLCSIHDSANSALGFVVKVDIRFCKQRFGCYNILVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14614" e_stop="14752"/>
            <exon e_start="15874" e_stop="16011"/>
            <exon e_start="17398" e_stop="17616"/>
            <exon e_start="17696" e_stop="17833"/>
            <exon e_start="17972" e_stop="18050"/>
            <exon e_start="18576" e_stop="18644"/>
            <exon e_start="18751" e_stop="18826"/>
            <exon e_start="19159" e_stop="19215"/>
            <exon e_start="19293" e_stop="19978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.897" e_score="0.986"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.958" e_score="0.995"/>
          <exon-intron don_prob="0.951" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.552" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="14614" e_stop="14752" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.897">
            <gDNA_intron_boundary i_start="14753" i_stop="15873" i_length="1121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15874" e_stop="16011" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="16012" i_stop="17397" i_length="1386"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="17398" e_stop="17616" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.907" acc_prob="0.958">
            <gDNA_intron_boundary i_start="17617" i_stop="17695" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17696" e_stop="17833" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.959">
            <gDNA_intron_boundary i_start="17834" i_stop="17971" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17972" e_stop="18050" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18051" i_stop="18575" i_length="525"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18576" e_stop="18644" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="18645" i_stop="18750" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18751" e_stop="18826" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="18827" i_stop="19158" i_length="332"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19159" e_stop="19215" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.552">
            <gDNA_intron_boundary i_start="19216" i_stop="19292" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19293" e_stop="19978" e_length="686"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14614" stop="14752"/>
              <exon start="15874" stop="16011"/>
              <exon start="17398" stop="17616"/>
              <exon start="17696" stop="17769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17411" stop="17616"/>
              <exon start="17696" stop="17833"/>
              <exon start="17972" stop="18048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17742" stop="17833"/>
              <exon start="17972" stop="18050"/>
              <exon start="18576" stop="18644"/>
              <exon start="18751" stop="18826"/>
              <exon start="19159" stop="19215"/>
              <exon start="19293" stop="19773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18798" stop="18826"/>
              <exon start="19159" stop="19215"/>
              <exon start="19293" stop="19859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18798" stop="18826"/>
              <exon start="19159" stop="19215"/>
              <exon start="19293" stop="19696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19399" stop="19978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19507" stop="19950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19516" stop="19950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19554" stop="19943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19574" stop="19943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCGGTGAG : GAGAGTGATGAAAAGAAGAGGAAATTGATAGTTACATTTGGTTCAAACCTAATTAAGCTATTTCTAGCTCAGCCGCCTCCAACTCTCTATCTCAATTTCCATTGGTCGGTCTGCTTTCCAGAACAAATCCTTGTTCAG : GTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAA : GGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAG : GCGAAGACACAGGAAATGGAGGAAACTCAACAAAGATCATTTGAAAGAATCAAGGAATTGTACCAAAACGAAAATGCCA : AACGGCAAAGCCGACAAGTTCAAGTCTGCACAAAGGTTCCCCCTTCTAGCAATAAAAGAAGCTTTTATG : GTAGTGGACTTGGTAGCAATTTTGGGAACACAAAGAGTCCGTTGATGAAGAAGGCAAAAATAGAGTTTGTCAACAG : TCGAGAAGTAAAGAATTTAGCTGCTATGAAGAATAAGTCTGTGCAAAGAAATCATAG : CCAAGTTTCTTCTATTAAGAAACCAGGTAGTTTTGTTTCTTCTCAAGAAAGAGGCAGAGGATATGAGCCTGACACCACAGCTAGGCGTGGTTCCTCCACATATCCTGACACCGCAGCTAAGCGTGGTTCCTCCACATATCCTGACAGCGCAGCTAGGCGTGGTTCCTCCACATATCATGACACCGCAGCTAGGCATGGTTCCTCCACATATCCTGACGCTGCAGCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAATATAATCCATTTTTGGACATTATTACATTATACTTA</gDNA_template>
            <first_frame> P  M  R  C  S  F  *  T  R  S  E  F  K  F  L  Y  P  F  P  Y  K  F  N  Y  Y  F  S  D  I  *  S  S  A  S  V  R  R  I  P  A  P  I  T  F  R  *   : G  E  *  *  K  E  E  E  I  D  S  Y  I  W  F  K  P  N  *  A  I  S  S  S  A  A  S  N  S  L  S  Q  F  P  L  V  G  L  L  S  R  T  N  P  C  S   : G  V  S  W  P  E  *  I  E  A  R  T  E  T  *  K  A  F  Y  N  E  V  *  G  S  F  A  G  R  F  M  C  S  D  S  S  R  *  F  E  V  P  W  G  C  G  *  N  R  H  L  S  T  R  A  H  F  A  S  L  F  S  *  T  I  D  T  C  G  E  F  D  R   : R  K  R  S  Q  S  S  D  *  *  T  L  E  E  V  L  P  D  *  V  W  *  Q  E  H  Q  S  G  G  *  A  N  E  A  S  E  S  N  I  *  M  E  T  V  I  *   : G  E  D  T  G  N  G  G  N  S  T  K  I  I  *  K  N  Q  G  I  V  P  K  R  K  C  Q :   T  A  K  P  T  S  S  S  L  H  K  G  S  P  F  *  Q  *  K  K  L  L  W :   *  W  T  W  *  Q  F  W  E  H  K  E  S  V  D  E  E  G  K  N  R  V  C  Q  Q  :  S  R  S  K  E  F  S  C  Y  E  E  *  V  C  A  K  K  S  *  :  P  S  F  F  Y  *  E  T  R  *  F  C  F  F  S  R  K  R  Q  R  I  *  A  *  H  H  S  *  A  W  F  L  H  I  S  *  H  R  S  *  A  W  F  L  H  I  S  *  Q  R  S  *  A  W  F  L  H  I  S  *  H  R  S  *  A  W  F  L  H  I  S  *  R  C  S  *  A  W  F  L  H  L  S  *  H  R  S  E  A  C  S  L  H  I  S  *  Y  H  N  *  A  W  F  L  P  H  G  F  V  S  K  I  E  I  Y  *  P  V  G  E  K  L  G  W  H  F  M  Y  Q  S  W  L  L  K  G  N  A  E  R  C  V  F  R  Y  M  K  A  Q  L  C  K  F  Y  K  T  P  E  S  A  T  L  Q  F  S  *  N  V  W  R  A  P  Y  I  I  L  N  I  M  F  N  P  *  F  C  K  *  C  S  W  I  C  C  *  G  G  Y  S  V  L  *  T  T  L  W  M  L  *  Y  I  G  L  L  D  N  D  T  N  I  I  H  F  W  T  L  L  H  Y  T   </first_frame>
            <second_frame>  R  C  V  A  V  F  K  L  D  R  N  S  S  S  F  I  P  S  P  T  N  S  I  I  I  F  Q  I  F  D  H  R  R  R  S  G  E  F  Q  L  R  S  H  S  G  E  :  E  S  D  E  K  K  R  K  L  I  V  T  F  G  S  N  L  I  K  L  F  L  A  Q  P  P  P  T  L  Y  L  N  F  H  W  S  V  C  F  P  E  Q  I  L  V  Q  :  V  *  A  G  Q  N  R  L  K  H  V  L  R  H  K  R  R  F  T  M  R  C  K  V  P  S  L  V  D  L  C  V  R  T  A  V  D  N  L  R  Y  L  G  D  V  G  E  T  D  T  Y  L  L  E  R  I  L  P  H  C  S  L  E  Q  L  T  H  V  E  N  S  T  E  :  G  R  D  L  S  Q  V  T  D  R  L  W  K  R  F  Y  Q  I  E  F  G  D  K  S  I  N  Q  V  V  E  R  M  K  Q  V  K  V  T  F  K  W  K  Q  L  Y  E  :  A  K  T  Q  E  M  E  E  T  Q  Q  R  S  F  E  R  I  K  E  L  Y  Q  N  E  N  A   : K  R  Q  S  R  Q  V  Q  V  C  T  K  V  P  P  S  S  N  K  R  S  F  Y   : G  S  G  L  G  S  N  F  G  N  T  K  S  P  L  M  K  K  A  K  I  E  F  V  N  S :   R  E  V  K  N  L  A  A  M  K  N  K  S  V  Q  R  N  H  S :   Q  V  S  S  I  K  K  P  G  S  F  V  S  S  Q  E  R  G  R  G  Y  E  P  D  T  T  A  R  R  G  S  S  T  Y  P  D  T  A  A  K  R  G  S  S  T  Y  P  D  S  A  A  R  R  G  S  S  T  Y  H  D  T  A  A  R  H  G  S  S  T  Y  P  D  A  A  A  R  R  G  S  S  T  Y  P  D  T  A  A  R  R  V  P  S  T  Y  P  D  T  T  T  R  L  G  S  S  P  M  A  S  S  A  R  S  K  F  T  S  R  *  E  R  S  *  A  G  I  L  C  I  K  A  G  C  *  K  E  M  L  S  G  V  S  S  A  T  *  K  R  S  C  V  N  S  I  K  R  L  K  V  Q  L  C  N  F  R  K  T  F  G  V  L  R  I  S  Y  L  T  L  C  S  I  H  D  S  A  N  S  A  L  G  F  V  V  K  V  D  I  R  F  C  K  Q  R  F  G  C  Y  N  I  L  V  Y  *  I  M  I  Q  I  *  S  I  F  G  H  Y  Y  I  I  L  </second_frame>
            <third_frame>   D  A  L  Q  F  L  N  S  I  G  I  Q  V  P  L  S  L  P  L  Q  I  Q  L  L  F  F  R  Y  L  I  I  G  V  G  Q  A  N  S  S  S  D  H  I  P  V  R :   R  V  M  K  R  R  G  N  *  *  L  H  L  V  Q  T  *  L  S  Y  F  *  L  S  R  L  Q  L  S  I  S  I  S  I  G  R  S  A  F  Q  N  K  S  L  F  R :   C  E  L  A  R  I  D  *  S  T  Y  *  D  I  K  G  V  L  Q  *  G  V  R  F  L  R  W  *  I  Y  V  F  G  Q  Q  *  I  I  *  G  T  L  G  M  W  V  K  Q  T  L  I  Y  *  S  A  F  C  L  T  V  L  L  N  N  *  H  M  W  R  I  R  Q  K :   E  E  I  S  V  K  *  L  I  D  F  G  R  G  F  T  R  L  S  L  V  T  R  A  S  I  R  W  L  S  E  *  S  K  *  K  *  H  L  N  G  N  S  Y  M  R :   R  R  H  R  K  W  R  K  L  N  K  D  H  L  K  E  S  R  N  C  T  K  T  K  M  P  :  N  G  K  A  D  K  F  K  S  A  Q  R  F  P  L  L  A  I  K  E  A  F  M  :  V  V  D  L  V  A  I  L  G  T  Q  R  V  R  *  *  R  R  Q  K  *  S  L  S  T   : V  E  K  *  R  I  *  L  L  *  R  I  S  L  C  K  E  I  I   : A  K  F  L  L  L  R  N  Q  V  V  L  F  L  L  K  K  E  A  E  D  M  S  L  T  P  Q  L  G  V  V  P  P  H  I  L  T  P  Q  L  S  V  V  P  P  H  I  L  T  A  Q  L  G  V  V  P  P  H  I  M  T  P  Q  L  G  M  V  P  P  H  I  L  T  L  Q  L  G  V  V  P  P  P  I  L  T  P  Q  R  G  V  F  P  P  H  I  L  I  P  Q  L  G  L  V  P  P  P  W  L  R  Q  Q  D  R  N  L  L  A  G  R  R  E  V  R  L  A  F  Y  V  S  K  L  A  V  E  R  K  C  *  A  V  C  L  P  L  H  E  S  A  V  V  *  I  L  *  N  A  *  K  C  N  S  A  I  F  V  K  R  L  A  C  S  V  Y  H  T  *  H  Y  V  Q  S  M  I  L  Q  I  V  L  L  D  L  L  L  R  W  I  F  G  F  V  N  N  A  L  D  V  I  I  Y  W  S  I  R  *  *  Y  K  Y  N  P  F  L  D  I  I  T  L  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17404" stop="17616"/>
                    <exon start="17696" stop="17833"/>
                    <exon start="17972" stop="18050"/>
                    <exon start="18576" stop="18644"/>
                    <exon start="18751" stop="18826"/>
                    <exon start="19159" stop="19215"/>
                    <exon start="19293" stop="19647"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGQNRLKHVLRHKRRFTMRCKVPSLVDLCVRTAVDNLRYLGDVGETDTYLLERILPHCSLEQLTHVENSTEGRDLSQVTDRLWKRFYQIEFGDKSINQVVERMKQVKVTFKWKQLYEAKTQEMEETQQRSFERIKELYQNENAKRQSRQVQVCTKVPPSSNKRSFYGSGLGSNFGNTKSPLMKKAKIEFVNSREVKNLAAMKNKSVQRNHSQVSSIKKPGSFVSSQERGRGYEPDTTARRGSSTYPDTAAKRGSSTYPDSAARRGSSTYHDTAARHGSSTYPDAAARRGSSTYPDTAARRVPSTYPDTTTRLGSSPMASSARSKFTSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14615" stop="14752"/>
                    <exon start="15874" stop="16011"/>
                    <exon start="17398" stop="17403"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCVAVFKLDRNSSSFIPSPTNSIIIFQIFDHRRRSGEFQLRSHSGEESDEKKRKLIVTFGSNLIKLFLAQPPPTLYLNFHWSVCFPEQILVQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19729" stop="19929"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRSCVNSIKRLKVQLCNFRKTFGVLRISYLTLCSIHDSANSALGFVVKVDIRFCKQRFGCYNILVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14587" e_stop="14747"/>
            <exon e_start="15874" e_stop="16011"/>
            <exon e_start="17398" e_stop="17616"/>
            <exon e_start="17696" e_stop="17833"/>
            <exon e_start="17972" e_stop="18050"/>
            <exon e_start="18576" e_stop="18644"/>
            <exon e_start="18751" e_stop="18826"/>
            <exon e_start="19159" e_stop="19215"/>
            <exon e_start="19293" e_stop="19978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.552" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14587" e_stop="14747" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.897">
            <gDNA_intron_boundary i_start="14748" i_stop="15873" i_length="1126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15874" e_stop="16011" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="16012" i_stop="17397" i_length="1386"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17398" e_stop="17616" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.907" acc_prob="0.958">
            <gDNA_intron_boundary i_start="17617" i_stop="17695" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17696" e_stop="17833" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.959">
            <gDNA_intron_boundary i_start="17834" i_stop="17971" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17972" e_stop="18050" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18051" i_stop="18575" i_length="525"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18576" e_stop="18644" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="18645" i_stop="18750" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18751" e_stop="18826" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="18827" i_stop="19158" i_length="332"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19159" e_stop="19215" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.552">
            <gDNA_intron_boundary i_start="19216" i_stop="19292" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19293" e_stop="19978" e_length="686"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14587" stop="14747"/>
              <exon start="15874" stop="16011"/>
              <exon start="17398" stop="17616"/>
              <exon start="17696" stop="17801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17411" stop="17616"/>
              <exon start="17696" stop="17833"/>
              <exon start="17972" stop="18048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17742" stop="17833"/>
              <exon start="17972" stop="18050"/>
              <exon start="18576" stop="18644"/>
              <exon start="18751" stop="18826"/>
              <exon start="19159" stop="19215"/>
              <exon start="19293" stop="19773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18798" stop="18826"/>
              <exon start="19159" stop="19215"/>
              <exon start="19293" stop="19859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18798" stop="18826"/>
              <exon start="19159" stop="19215"/>
              <exon start="19293" stop="19696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19399" stop="19978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19507" stop="19950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19516" stop="19950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19554" stop="19943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19574" stop="19943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTTTTGTGTTTCCGATGAATCTTCCGATGCGTTGCAGTTTTTAAACTCGATCGGAATTCAAGTTCCTTTATCCCTTCCCCTACAAATTCAATTATTATTTTTCAGATATTTGATCATCGGCGTCGGTCAGGCGAATTCCAGCTCCGATCACATTCCG : GAGAGTGATGAAAAGAAGAGGAAATTGATAGTTACATTTGGTTCAAACCTAATTAAGCTATTTCTAGCTCAGCCGCCTCCAACTCTCTATCTCAATTTCCATTGGTCGGTCTGCTTTCCAGAACAAATCCTTGTTCAG : GTGTGAGCTGGCCAGAATAGATTGAAGCACGTACTGAGACATAAAAGGCGTTTTACAATGAGGTGTAAGGTTCCTTCGCTGGTAGATTTATGTGTTCGGACAGCAGTAGATAATTTGAGGTACCTTGGGGATGTGGGTGAAACAGACACTTATCTACTAGAGCGCATTTTGCCTCACTGTTCTCTTGAACAATTGACACATGTGGAGAATTCGACAGAA : GGAAGAGATCTCAGTCAAGTGACTGATAGACTTTGGAAGAGGTTTTACCAGATTGAGTTTGGTGACAAGAGCATCAATCAGGTGGTTGAGCGAATGAAGCAAGTGAAAGTAACATTTAAATGGAAACAGTTATATGAG : GCGAAGACACAGGAAATGGAGGAAACTCAACAAAGATCATTTGAAAGAATCAAGGAATTGTACCAAAACGAAAATGCCA : AACGGCAAAGCCGACAAGTTCAAGTCTGCACAAAGGTTCCCCCTTCTAGCAATAAAAGAAGCTTTTATG : GTAGTGGACTTGGTAGCAATTTTGGGAACACAAAGAGTCCGTTGATGAAGAAGGCAAAAATAGAGTTTGTCAACAG : TCGAGAAGTAAAGAATTTAGCTGCTATGAAGAATAAGTCTGTGCAAAGAAATCATAG : CCAAGTTTCTTCTATTAAGAAACCAGGTAGTTTTGTTTCTTCTCAAGAAAGAGGCAGAGGATATGAGCCTGACACCACAGCTAGGCGTGGTTCCTCCACATATCCTGACACCGCAGCTAAGCGTGGTTCCTCCACATATCCTGACAGCGCAGCTAGGCGTGGTTCCTCCACATATCATGACACCGCAGCTAGGCATGGTTCCTCCACATATCCTGACGCTGCAGCTAGGCGTGGTTCCTCCACCTATCCTGACACCGCAGCGAGGCGTGTTCCCTCCACATATCCTGATACCACAACTAGGCTTGGTTCCTCCCCCATGGCTTCGTCAGCAAGATCGAAATTTACTAGCCGGTAGGAGAGAAGTTAGGCTGGCATTTTATGTATCAAAGCTGGCTGTTGAAAGGAAATGCTGAGCGGTGTGTCTTCCGCTACATGAAAGCGCAGTTGTGTAAATTCTATAAAACGCCTGAAAGTGCAACTCTGCAATTTTCGTAAAACGTTTGGCGTGCTCCGTATATCATACTTAACATTATGTTCAATCCATGATTCTGCAAATAGTGCTCTTGGATTTGTTGTTAAGGTGGATATTCGGTTTTGTAAACAACGCTTTGGATGTTATAATATATTGGTCTATTAGATAATGATACAAATATAATCCATTTTTGGACATTATTACATTATACTTA</gDNA_template>
            <first_frame> *  F  F  V  F  P  M  N  L  P  M  R  C  S  F  *  T  R  S  E  F  K  F  L  Y  P  F  P  Y  K  F  N  Y  Y  F  S  D  I  *  S  S  A  S  V  R  R  I  P  A  P  I  T  F  R :   R  V  M  K  R  R  G  N  *  *  L  H  L  V  Q  T  *  L  S  Y  F  *  L  S  R  L  Q  L  S  I  S  I  S  I  G  R  S  A  F  Q  N  K  S  L  F  R :   C  E  L  A  R  I  D  *  S  T  Y  *  D  I  K  G  V  L  Q  *  G  V  R  F  L  R  W  *  I  Y  V  F  G  Q  Q  *  I  I  *  G  T  L  G  M  W  V  K  Q  T  L  I  Y  *  S  A  F  C  L  T  V  L  L  N  N  *  H  M  W  R  I  R  Q  K :   E  E  I  S  V  K  *  L  I  D  F  G  R  G  F  T  R  L  S  L  V  T  R  A  S  I  R  W  L  S  E  *  S  K  *  K  *  H  L  N  G  N  S  Y  M  R :   R  R  H  R  K  W  R  K  L  N  K  D  H  L  K  E  S  R  N  C  T  K  T  K  M  P  :  N  G  K  A  D  K  F  K  S  A  Q  R  F  P  L  L  A  I  K  E  A  F  M  :  V  V  D  L  V  A  I  L  G  T  Q  R  V  R  *  *  R  R  Q  K  *  S  L  S  T   : V  E  K  *  R  I  *  L  L  *  R  I  S  L  C  K  E  I  I   : A  K  F  L  L  L  R  N  Q  V  V  L  F  L  L  K  K  E  A  E  D  M  S  L  T  P  Q  L  G  V  V  P  P  H  I  L  T  P  Q  L  S  V  V  P  P  H  I  L  T  A  Q  L  G  V  V  P  P  H  I  M  T  P  Q  L  G  M  V  P  P  H  I  L  T  L  Q  L  G  V  V  P  P  P  I  L  T  P  Q  R  G  V  F  P  P  H  I  L  I  P  Q  L  G  L  V  P  P  P  W  L  R  Q  Q  D  R  N  L  L  A  G  R  R  E  V  R  L  A  F  Y  V  S  K  L  A  V  E  R  K  C  *  A  V  C  L  P  L  H  E  S  A  V  V  *  I  L  *  N  A  *  K  C  N  S  A  I  F  V  K  R  L  A  C  S  V  Y  H  T  *  H  Y  V  Q  S  M  I  L  Q  I  V  L  L  D  L  L  L  R  W  I  F  G  F  V  N  N  A  L  D  V  I  I  Y  W  S  I  R  *  *  Y  K  Y  N  P  F  L  D  I  I  T  L  Y  L </first_frame>
            <second_frame>  N  F  L  C  F  R  *  I  F  R  C  V  A  V  F  K  L  D  R  N  S  S  S  F  I  P  S  P  T  N  S  I  I  I  F  Q  I  F  D  H  R  R  R  S  G  E  F  Q  L  R  S  H  S   : G  E  *  *  K  E  E  E  I  D  S  Y  I  W  F  K  P  N  *  A  I  S  S  S  A  A  S  N  S  L  S  Q  F  P  L  V  G  L  L  S  R  T  N  P  C  S   : G  V  S  W  P  E  *  I  E  A  R  T  E  T  *  K  A  F  Y  N  E  V  *  G  S  F  A  G  R  F  M  C  S  D  S  S  R  *  F  E  V  P  W  G  C  G  *  N  R  H  L  S  T  R  A  H  F  A  S  L  F  S  *  T  I  D  T  C  G  E  F  D  R   : R  K  R  S  Q  S  S  D  *  *  T  L  E  E  V  L  P  D  *  V  W  *  Q  E  H  Q  S  G  G  *  A  N  E  A  S  E  S  N  I  *  M  E  T  V  I  *   : G  E  D  T  G  N  G  G  N  S  T  K  I  I  *  K  N  Q  G  I  V  P  K  R  K  C  Q :   T  A  K  P  T  S  S  S  L  H  K  G  S  P  F  *  Q  *  K  K  L  L  W :   *  W  T  W  *  Q  F  W  E  H  K  E  S  V  D  E  E  G  K  N  R  V  C  Q  Q  :  S  R  S  K  E  F  S  C  Y  E  E  *  V  C  A  K  K  S  *  :  P  S  F  F  Y  *  E  T  R  *  F  C  F  F  S  R  K  R  Q  R  I  *  A  *  H  H  S  *  A  W  F  L  H  I  S  *  H  R  S  *  A  W  F  L  H  I  S  *  Q  R  S  *  A  W  F  L  H  I  S  *  H  R  S  *  A  W  F  L  H  I  S  *  R  C  S  *  A  W  F  L  H  L  S  *  H  R  S  E  A  C  S  L  H  I  S  *  Y  H  N  *  A  W  F  L  P  H  G  F  V  S  K  I  E  I  Y  *  P  V  G  E  K  L  G  W  H  F  M  Y  Q  S  W  L  L  K  G  N  A  E  R  C  V  F  R  Y  M  K  A  Q  L  C  K  F  Y  K  T  P  E  S  A  T  L  Q  F  S  *  N  V  W  R  A  P  Y  I  I  L  N  I  M  F  N  P  *  F  C  K  *  C  S  W  I  C  C  *  G  G  Y  S  V  L  *  T  T  L  W  M  L  *  Y  I  G  L  L  D  N  D  T  N  I  I  H  F  W  T  L  L  H  Y  T   </second_frame>
            <third_frame>   I  F  C  V  S  D  E  S  S  D  A  L  Q  F  L  N  S  I  G  I  Q  V  P  L  S  L  P  L  Q  I  Q  L  L  F  F  R  Y  L  I  I  G  V  G  Q  A  N  S  S  S  D  H  I  P  :  E  S  D  E  K  K  R  K  L  I  V  T  F  G  S  N  L  I  K  L  F  L  A  Q  P  P  P  T  L  Y  L  N  F  H  W  S  V  C  F  P  E  Q  I  L  V  Q  :  V  *  A  G  Q  N  R  L  K  H  V  L  R  H  K  R  R  F  T  M  R  C  K  V  P  S  L  V  D  L  C  V  R  T  A  V  D  N  L  R  Y  L  G  D  V  G  E  T  D  T  Y  L  L  E  R  I  L  P  H  C  S  L  E  Q  L  T  H  V  E  N  S  T  E  :  G  R  D  L  S  Q  V  T  D  R  L  W  K  R  F  Y  Q  I  E  F  G  D  K  S  I  N  Q  V  V  E  R  M  K  Q  V  K  V  T  F  K  W  K  Q  L  Y  E  :  A  K  T  Q  E  M  E  E  T  Q  Q  R  S  F  E  R  I  K  E  L  Y  Q  N  E  N  A   : K  R  Q  S  R  Q  V  Q  V  C  T  K  V  P  P  S  S  N  K  R  S  F  Y   : G  S  G  L  G  S  N  F  G  N  T  K  S  P  L  M  K  K  A  K  I  E  F  V  N  S :   R  E  V  K  N  L  A  A  M  K  N  K  S  V  Q  R  N  H  S :   Q  V  S  S  I  K  K  P  G  S  F  V  S  S  Q  E  R  G  R  G  Y  E  P  D  T  T  A  R  R  G  S  S  T  Y  P  D  T  A  A  K  R  G  S  S  T  Y  P  D  S  A  A  R  R  G  S  S  T  Y  H  D  T  A  A  R  H  G  S  S  T  Y  P  D  A  A  A  R  R  G  S  S  T  Y  P  D  T  A  A  R  R  V  P  S  T  Y  P  D  T  T  T  R  L  G  S  S  P  M  A  S  S  A  R  S  K  F  T  S  R  *  E  R  S  *  A  G  I  L  C  I  K  A  G  C  *  K  E  M  L  S  G  V  S  S  A  T  *  K  R  S  C  V  N  S  I  K  R  L  K  V  Q  L  C  N  F  R  K  T  F  G  V  L  R  I  S  Y  L  T  L  C  S  I  H  D  S  A  N  S  A  L  G  F  V  V  K  V  D  I  R  F  C  K  Q  R  F  G  C  Y  N  I  L  V  Y  *  I  M  I  Q  I  *  S  I  F  G  H  Y  Y  I  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17404" stop="17616"/>
                    <exon start="17696" stop="17833"/>
                    <exon start="17972" stop="18050"/>
                    <exon start="18576" stop="18644"/>
                    <exon start="18751" stop="18826"/>
                    <exon start="19159" stop="19215"/>
                    <exon start="19293" stop="19647"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGQNRLKHVLRHKRRFTMRCKVPSLVDLCVRTAVDNLRYLGDVGETDTYLLERILPHCSLEQLTHVENSTEGRDLSQVTDRLWKRFYQIEFGDKSINQVVERMKQVKVTFKWKQLYEAKTQEMEETQQRSFERIKELYQNENAKRQSRQVQVCTKVPPSSNKRSFYGSGLGSNFGNTKSPLMKKAKIEFVNSREVKNLAAMKNKSVQRNHSQVSSIKKPGSFVSSQERGRGYEPDTTARRGSSTYPDTAAKRGSSTYPDSAARRGSSTYHDTAARHGSSTYPDAAARRGSSTYPDTAARRVPSTYPDTTTRLGSSPMASSARSKFTSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14589" stop="14747"/>
                    <exon start="15874" stop="16011"/>
                    <exon start="17398" stop="17403"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFCVSDESSDALQFLNSIGIQVPLSLPLQIQLLFFRYLIIGVGQANSSSDHIPESDEKKRKLIVTFGSNLIKLFLAQPPPTLYLNFHWSVCFPEQILVQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19729" stop="19929"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRSCVNSIKRLKVQLCNFRKTFGVLRISYLTLCSIHDSANSALGFVVKVDIRFCKQRFGCYNILVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="20927" PGL_stop="20335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20927" e_stop="20810"/>
            <exon e_start="20732" e_stop="20335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20927" e_stop="20810" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="20809" i_stop="20733" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="20732" e_stop="20335" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20927" stop="20810"/>
              <exon start="20732" stop="20335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713437" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGATTTCCCACGGAGTTCTTTCCAGTTTTATTTGCAATCCCTCGCATGGCTGGCTACTTAGCGCATTGGCGTGAGTCCCTTGACGATCCTGATACCAAGATAATGAGACCAGCACAG : GTGTACACTGGTGTATGGTTGCGTCACTATGTGCCTCTCCGAGGTCGATCACCTTCAACCGAGACGGATAAGTTCGGTCAGGTATCAGTCTCCAACGCCACCAGGCGGAGGTTAGCTGGTTCGGGTGATTAGACTTGGTTCGTAGTTTCAGACGTTACATCAGGAAAATGTAGATGAATAGAACATCAAGCTCTTGTTTAGGTTTACCACCAATGGAGATGCTCTGTTTTCTTCTTAAGCTTGCATGTAATAATAATAATGTACTCAGAATTCAAATTTTCTGATGTTCGGTTAGAATTTTGAATTATGGGTTGTACTTTATTTTTGAAATGTACGAATTGGAAATGAAATTCAGTACAATGAATTTACGAATATATGAAAATTTGAAAATTTTTATA</gDNA_template>
            <first_frame> R  I  S  H  G  V  L  S  S  F  I  C  N  P  S  H  G  W  L  L  S  A  L  A  *  V  P  *  R  S  *  Y  Q  D  N  E  T  S  T   : G  V  H  W  C  M  V  A  S  L  C  A  S  P  R  S  I  T  F  N  R  D  G  *  V  R  S  G  I  S  L  Q  R  H  Q  A  E  V  S  W  F  G  *  L  D  L  V  R  S  F  R  R  Y  I  R  K  M  *  M  N  R  T  S  S  S  C  L  G  L  P  P  M  E  M  L  C  F  L  L  K  L  A  C  N  N  N  N  V  L  R  I  Q  I  F  *  C  S  V  R  I  L  N  Y  G  L  Y  F  I  F  E  M  Y  E  L  E  M  K  F  S  T  M  N  L  R  I  Y  E  N  L  K  I  F  I </first_frame>
            <second_frame>  G  F  P  T  E  F  F  P  V  L  F  A  I  P  R  M  A  G  Y  L  A  H  W  R  E  S  L  D  D  P  D  T  K  I  M  R  P  A  Q  :  V  Y  T  G  V  W  L  R  H  Y  V  P  L  R  G  R  S  P  S  T  E  T  D  K  F  G  Q  V  S  V  S  N  A  T  R  R  R  L  A  G  S  G  D  *  T  W  F  V  V  S  D  V  T  S  G  K  C  R  *  I  E  H  Q  A  L  V  *  V  Y  H  Q  W  R  C  S  V  F  F  L  S  L  H  V  I  I  I  M  Y  S  E  F  K  F  S  D  V  R  L  E  F  *  I  M  G  C  T  L  F  L  K  C  T  N  W  K  *  N  S  V  Q  *  I  Y  E  Y  M  K  I  *  K  F  L   </second_frame>
            <third_frame>   D  F  P  R  S  S  F  Q  F  Y  L  Q  S  L  A  W  L  A  T  *  R  I  G  V  S  P  L  T  I  L  I  P  R  *  *  D  Q  H  R :   C  T  L  V  Y  G  C  V  T  M  C  L  S  E  V  D  H  L  Q  P  R  R  I  S  S  V  R  Y  Q  S  P  T  P  P  G  G  G  *  L  V  R  V  I  R  L  G  S  *  F  Q  T  L  H  Q  E  N  V  D  E  *  N  I  K  L  L  F  R  F  T  T  N  G  D  A  L  F  S  S  *  A  C  M  *  *  *  *  C  T  Q  N  S  N  F  L  M  F  G  *  N  F  E  L  W  V  V  L  Y  F  *  N  V  R  I  G  N  E  I  Q  Y  N  E  F  T  N  I  *  K  F  E  N  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20926" stop="20810"/>
                    <exon start="20732" stop="20601"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPAQVYTGVWLRHYVPLRGRSPSTETDKFGQVSVSNATRRRLAGSGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28702" PGL_stop="21816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28702" e_stop="28429"/>
            <exon e_start="28328" e_stop="28148"/>
            <exon e_start="27920" e_stop="27835"/>
            <exon e_start="27321" e_stop="27217"/>
            <exon e_start="22429" e_stop="22367"/>
            <exon e_start="22210" e_stop="22101"/>
            <exon e_start="21898" e_stop="21816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.795" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28702" e_stop="28429" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28428" i_stop="28329" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28328" e_stop="28148" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.795" acc_prob="0.961">
            <gDNA_intron_boundary i_start="28147" i_stop="27921" i_length="227"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27920" e_stop="27835" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27834" i_stop="27322" i_length="513"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27321" e_stop="27217" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="27216" i_stop="22430" i_length="4787"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22429" e_stop="22367" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22366" i_stop="22211" i_length="156"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22210" e_stop="22101" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.983">
            <gDNA_intron_boundary i_start="22100" i_stop="21899" i_length="202"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="21898" e_stop="21816" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28702" stop="28429"/>
              <exon start="28328" stop="28148"/>
              <exon start="27920" stop="27835"/>
              <exon start="27321" stop="27233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28702" stop="28429"/>
              <exon start="28328" stop="28148"/>
              <exon start="27920" stop="27888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28662" stop="28429"/>
              <exon start="28328" stop="28148"/>
              <exon start="27920" stop="27835"/>
              <exon start="27321" stop="27228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28552" stop="28429"/>
              <exon start="28328" stop="28148"/>
              <exon start="27920" stop="27835"/>
              <exon start="27321" stop="27217"/>
              <exon start="22429" stop="22367"/>
              <exon start="22210" stop="22101"/>
              <exon start="21898" stop="21816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28550" stop="28429"/>
              <exon start="28328" stop="28148"/>
              <exon start="27920" stop="27835"/>
              <exon start="27321" stop="27231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28550" stop="28429"/>
              <exon start="28328" stop="28197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28549" stop="28429"/>
              <exon start="28328" stop="28148"/>
              <exon start="27920" stop="27835"/>
              <exon start="27321" stop="27217"/>
              <exon start="22429" stop="22367"/>
              <exon start="22210" stop="22101"/>
              <exon start="21898" stop="21856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28549" stop="28429"/>
              <exon start="28328" stop="28148"/>
              <exon start="27920" stop="27835"/>
              <exon start="27321" stop="27217"/>
              <exon start="22429" stop="22367"/>
              <exon start="22210" stop="22111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28549" stop="28429"/>
              <exon start="28328" stop="28148"/>
              <exon start="27920" stop="27835"/>
              <exon start="27321" stop="27217"/>
              <exon start="22429" stop="22367"/>
              <exon start="22210" stop="22191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292156" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAACCATAGAATTTATTAGTAACACTAATGGAGCGCGGGAAATCTTCAGCTGTTGCTCGAAGTCGGTTATCGGTAATCACAGCTCATCTCGCCGCCGATTACTCCGCCTCCTCCCATGGTCTGGAAACTTCCTCTGTATCTGCACCAACCGCTGCCGTGTCGCCGCCGCCTAATCTGAAAGGCGCCTTGACAATCATTGATGAGAGGACCGGTAAGAAGTATCAGGTTCCGGTTACCGAGGAAGGAACTGTTAAAGCTACCGACTTTAAGAAA : ATATCTACTGGATACAATGATAAGGGTCTCAAGCTTTATGATCCGGGCTATCTCAACACTGCACCCGTTCGTTCATCAATATGTTACATAGATGGTGATGCAGGGATTCTCAGGTATCGAGGTTACCCGATTGAAGAGTTGGCTGAGAGAAGTTCCTTCTTAGAAGTGGCTTATCTTTTAA : TGTATGGTAATTTACCATCTGAGAACCAATTATCAGACTGGGAGTTTGCAGTTTCACATCATTCAGCAGTTCCTCAGGGAGTTTTG : GATATCATACAGTCAATGCCTCATGATGCTCACCCGATGGGTGTTCTTGTTAGTGCTATGAGCACCCTATCTGTCTTTCATCCTGATGCCAATCCAGCTCTTAGG : GGCCAAGATATATACAATTCAAAACAAGTGAGGGATAAACAAATAGTTCGCATCCTTGGAAAG : GCACCTGTAATTGCTGCAGCTGCCTACTTGAGGATGGCTGGAAGACCACCTGTCCTTCCGTCCAACAACCTTTCTTATGCAGAGAACTTCTTGTACATGCTAGATTCATT : AGGTAATAGGTCTTACAAACCGAACCCTCGACTTGCTCGTGTAGTGGACATTCTCTTTATTTTACACGCGGAGCATGAAATGA</gDNA_template>
            <first_frame> *  T  I  E  F  I  S  N  T  N  G  A  R  E  I  F  S  C  C  S  K  S  V  I  G  N  H  S  S  S  R  R  R  L  L  R  L  L  P  W  S  G  N  F  L  C  I  C  T  N  R  C  R  V  A  A  A  *  S  E  R  R  L  D  N  H  *  *  E  D  R  *  E  V  S  G  S  G  Y  R  G  R  N  C  *  S  Y  R  L  *  E   : N  I  Y  W  I  Q  *  *  G  S  Q  A  L  *  S  G  L  S  Q  H  C  T  R  S  F  I  N  M  L  H  R  W  *  C  R  D  S  Q  V  S  R  L  P  D  *  R  V  G  *  E  K  F  L  L  R  S  G  L  S  F  N :   V  W  *  F  T  I  *  E  P  I  I  R  L  G  V  C  S  F  T  S  F  S  S  S  S  G  S  F   : G  Y  H  T  V  N  A  S  *  C  S  P  D  G  C  S  C  *  C  Y  E  H  P  I  C  L  S  S  *  C  Q  S  S  S  *   : G  P  R  Y  I  Q  F  K  T  S  E  G  *  T  N  S  S  H  P  W  K   : G  T  C  N  C  C  S  C  L  L  E  D  G  W  K  T  T  C  P  S  V  Q  Q  P  F  L  C  R  E  L  L  V  H  A  R  F  I  :  R  *  *  V  L  Q  T  E  P  S  T  C  S  C  S  G  H  S  L  Y  F  T  R  G  A  *  N   </first_frame>
            <second_frame>  E  P  *  N  L  L  V  T  L  M  E  R  G  K  S  S  A  V  A  R  S  R  L  S  V  I  T  A  H  L  A  A  D  Y  S  A  S  S  H  G  L  E  T  S  S  V  S  A  P  T  A  A  V  S  P  P  P  N  L  K  G  A  L  T  I  I  D  E  R  T  G  K  K  Y  Q  V  P  V  T  E  E  G  T  V  K  A  T  D  F  K  K  :  I  S  T  G  Y  N  D  K  G  L  K  L  Y  D  P  G  Y  L  N  T  A  P  V  R  S  S  I  C  Y  I  D  G  D  A  G  I  L  R  Y  R  G  Y  P  I  E  E  L  A  E  R  S  S  F  L  E  V  A  Y  L  L   : M  Y  G  N  L  P  S  E  N  Q  L  S  D  W  E  F  A  V  S  H  H  S  A  V  P  Q  G  V  L  :  D  I  I  Q  S  M  P  H  D  A  H  P  M  G  V  L  V  S  A  M  S  T  L  S  V  F  H  P  D  A  N  P  A  L  R  :  G  Q  D  I  Y  N  S  K  Q  V  R  D  K  Q  I  V  R  I  L  G  K  :  A  P  V  I  A  A  A  A  Y  L  R  M  A  G  R  P  P  V  L  P  S  N  N  L  S  Y  A  E  N  F  L  Y  M  L  D  S  L :   G  N  R  S  Y  K  P  N  P  R  L  A  R  V  V  D  I  L  F  I  L  H  A  E  H  E  M  </second_frame>
            <third_frame>   N  H  R  I  Y  *  *  H  *  W  S  A  G  N  L  Q  L  L  L  E  V  G  Y  R  *  S  Q  L  I  S  P  P  I  T  P  P  P  P  M  V  W  K  L  P  L  Y  L  H  Q  P  L  P  C  R  R  R  L  I  *  K  A  P  *  Q  S  L  M  R  G  P  V  R  S  I  R  F  R  L  P  R  K  E  L  L  K  L  P  T  L  R  K :   Y  L  L  D  T  M  I  R  V  S  S  F  M  I  R  A  I  S  T  L  H  P  F  V  H  Q  Y  V  T  *  M  V  M  Q  G  F  S  G  I  E  V  T  R  L  K  S  W  L  R  E  V  P  S  *  K  W  L  I  F  *  :  C  M  V  I  Y  H  L  R  T  N  Y  Q  T  G  S  L  Q  F  H  I  I  Q  Q  F  L  R  E  F  W :   I  S  Y  S  Q  C  L  M  M  L  T  R  W  V  F  L  L  V  L  *  A  P  Y  L  S  F  I  L  M  P  I  Q  L  L  G :   A  K  I  Y  T  I  Q  N  K  *  G  I  N  K  *  F  A  S  L  E  R :   H  L  *  L  L  Q  L  P  T  *  G  W  L  E  D  H  L  S  F  R  P  T  T  F  L  M  Q  R  T  S  C  T  C  *  I  H   : *  V  I  G  L  T  N  R  T  L  D  L  L  V  *  W  T  F  S  L  F  Y  T  R  S  M  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28692" stop="28429"/>
                    <exon start="28328" stop="28148"/>
                    <exon start="27920" stop="27835"/>
                    <exon start="27321" stop="27217"/>
                    <exon start="22429" stop="22367"/>
                    <exon start="22210" stop="22101"/>
                    <exon start="21898" stop="21817"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLLVTLMERGKSSAVARSRLSVITAHLAADYSASSHGLETSSVSAPTAAVSPPPNLKGALTIIDERTGKKYQVPVTEEGTVKATDFKKISTGYNDKGLKLYDPGYLNTAPVRSSICYIDGDAGILRYRGYPIEELAERSSFLEVAYLLMYGNLPSENQLSDWEFAVSHHSAVPQGVLDIIQSMPHDAHPMGVLVSAMSTLSVFHPDANPALRGQDIYNSKQVRDKQIVRILGKAPVIAAAAYLRMAGRPPVLPSNNLSYAENFLYMLDSLGNRSYKPNPRLARVVDILFILHAEHEM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35032" PGL_stop="28883"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35032" e_stop="34753"/>
            <exon e_start="34357" e_stop="34268"/>
            <exon e_start="33766" e_stop="33688"/>
            <exon e_start="33465" e_stop="33388"/>
            <exon e_start="31998" e_stop="31950"/>
            <exon e_start="30795" e_stop="30746"/>
            <exon e_start="30021" e_stop="29872"/>
            <exon e_start="29406" e_stop="29326"/>
            <exon e_start="29220" e_stop="28883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.373" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.852" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35032" e_stop="34753" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34752" i_stop="34358" i_length="395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34357" e_stop="34268" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.373" acc_prob="0.965">
            <gDNA_intron_boundary i_start="34267" i_stop="33767" i_length="501"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33766" e_stop="33688" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.984">
            <gDNA_intron_boundary i_start="33687" i_stop="33466" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33465" e_stop="33388" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="33387" i_stop="31999" i_length="1389"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31998" e_stop="31950" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.852" acc_prob="0.751">
            <gDNA_intron_boundary i_start="31949" i_stop="30796" i_length="1154"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30795" e_stop="30746" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30745" i_stop="30022" i_length="724"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30021" e_stop="29872" e_length="150"/>
          </exon>
          <intron i_serial="7" don_prob="0.936" acc_prob="0.920">
            <gDNA_intron_boundary i_start="29871" i_stop="29407" i_length="465"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29406" e_stop="29326" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.922" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29325" i_stop="29221" i_length="105"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29220" e_stop="28883" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35032" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33388"/>
              <exon start="31998" stop="31950"/>
              <exon start="30795" stop="30746"/>
              <exon start="30021" stop="29872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35021" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33388"/>
              <exon start="31998" stop="31950"/>
              <exon start="30795" stop="30746"/>
              <exon start="30021" stop="29872"/>
              <exon start="29406" stop="29366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35009" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33388"/>
              <exon start="31998" stop="31950"/>
              <exon start="30795" stop="30746"/>
              <exon start="30021" stop="29872"/>
              <exon start="29406" stop="29346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35006" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35006" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35006" stop="34753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35005" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33388"/>
              <exon start="31998" stop="31950"/>
              <exon start="30795" stop="30746"/>
              <exon start="30021" stop="29872"/>
              <exon start="29406" stop="29330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35005" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33388"/>
              <exon start="31998" stop="31950"/>
              <exon start="30795" stop="30746"/>
              <exon start="30021" stop="29959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35005" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33388"/>
              <exon start="31998" stop="31964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35005" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33388"/>
              <exon start="31998" stop="31965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35005" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35005" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35005" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35005" stop="34753"/>
              <exon start="34357" stop="34268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34936" stop="34753"/>
              <exon start="34357" stop="34268"/>
              <exon start="33766" stop="33688"/>
              <exon start="33465" stop="33388"/>
              <exon start="31998" stop="31966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30021" stop="29872"/>
              <exon start="29406" stop="29326"/>
              <exon start="29220" stop="28883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTTTCTTCATGGCTTCGAAGCTCGTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG : GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG : AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG : CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG : GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG : AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG : GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG : CTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCG : GTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</gDNA_template>
            <first_frame> H  F  S  S  W  L  R  S  S  F  *  T  D  *  D  L  S  V  E  S  L  N  S  A  T  S  V  L  I  N  S  E  T  R  F  P  F  S  P  P  H  K  I  R  *  H  G  D  L  I  P  K  L  L  S  Q  L  R  *  I  L  H  H  H  L  L  H  P  L  I  L  L  Q  Q  L  Q  V  L  S  M  N  L  N  L  P  N  S  L  P  L  P  K  P   : G  G  M  Q  K  D  P  L  S  H  Y  I  *  *  T  L  Q  D  L  L  L  L  G  P  L  F  V  G  T  S   : E  R  I  Q  I  A  L  D  L  L  K  D  *  S  L  L  M  L  V  V  E  A  E  F  Y  L  S :   L  W  L  E  W  E  L  R  S  R  E  L  M  L  W  T  K  I  L  R  L  L  A  F  M  R :   I  W  I  H  K  L  L  Q  L  N  I  G  A  Q  Q  L  :  K  A  W  L  K  N  R  D  N  S  M  L  *  L  R  *  R :   *  L  S  M  *  Q  I  L  L  D  S  A  N  H  Y  Q  R  *  P  F  L  V  V  L  Q  *  Y  Q  R  L  I  V  Q  *  E  H  M  Q  R  Q  L  L  Q  Q  S  I  S  Y  I  G :   F  Q  K  V  H  I  N  G  Q  A  F  *  P  Q  K  N  *  S  S  F  F  S  A  L  L  Y  R :   C  K  R  W  L  D  L  C  T  T  L  *  R  V  A  G  P  C  P  M  T  S  V  L  I  S  S  L  S  E  Q  N  Q  P  R  R  M  K  L  *  I  K  L  R  Y  S  C  Q  F  Y  S  A  V  N  L  L  T  H  S  V  C  N  L  F  F  S  F  V  G  *  *  M  Q  F  L  Y  V  R  I  *  T  S  T  S  Q  V  L  N  L  N  E  N  V  P  F  R  N  F  K  Y  M  C  I  I  F  D  *  *  N  L  *  L  </first_frame>
            <second_frame>  I  F  L  H  G  F  E  A  R  F  E  P  T  E  I  S  L  *  S  L  S  T  Q  R  R  P  F  *  *  T  Q  R  P  G  F  H  F  L  H  L  T  K  S  G  N  M  A  I  L  F  R  S  F  S  A  N  S  D  K  S  S  T  T  T  S  S  I  P  *  Y  F  Y  N  N  F  K  F  S  Q  *  I  *  T  C  Q  I  L  C  H  C  R  N  L  :  V  G  C  R  R  T  L  *  A  I  T  S  D  E  P  Y  K  T  C  F  Y  *  V  H  S  L  S  A  L  Q  :  K  G  S  K  L  H  *  T  F  *  R  T  E  V  C  *  C  W  L  W  R  R  N  F  I  *   : A  F  G  S  N  G  S  Y  G  H  G  S  *  C  C  G  Q  K  Y  *  D  C  S  P  S  C   : G  F  G  S  T  N  F  F  N  *  I  S  V  H  N  S  * :   K  P  G  *  R  T  E  T  I  R  C  C  D  C  A  R   : G  D  *  A  C  S  R  S  C  W  I  L  Q  I  I  I  S  V  D  H  S  W  W  C  Y  S  D  I  N  D  *  S  F  N  E  S  I  C  N  G  N  C  C  S  R  V  S  P  T  L   : A  S  K  R  Y  T  S  M  V  K  L  S  N  P  R  R  T  S  P  H  S  S  A  R  F  Y  I   : G  A  R  D  G  W  I  C  V  Q  P  F  D  G  S  L  V  L  V  R  *  H  Q  C  *  F  H  R  F  R  N  K  I  S  Q  E  G  *  N  S  R  L  S  Y  D  I  A  V  N  F  I  L  L  L  I  S  *  P  I  L  Y  V  I  S  F  S  V  L  L  D  D  E  C  N  F  Y  M  L  E  Y  E  H  P  H  H  K  F  L  T  *  M  K  M  Y  H  F  E  I  S  N  T  C  V  L  S  L  I  D  K  I  C  N  F </second_frame>
            <third_frame>   F  F  F  M  A  S  K  L  V  L  N  R  L  R  S  L  C  R  V  S  Q  L  S  D  V  R  F  D  K  L  R  D  P  V  S  I  F  S  T  S  Q  N  Q  V  T  W  R  S  Y  S  E  A  S  Q  P  T  P  I  N  P  P  P  P  P  P  P  S  P  N  T  S  T  T  T  S  S  S  L  N  E  F  E  L  A  K  F  S  A  I  A  E  T  W :   W  D  A  E  G  P  F  K  P  L  H  L  M  N  P  T  R  L  A  F  I  R  S  T  L  C  R  H  F  R :   K  D  P  N  C  T  R  P  F  E  G  L  K  F  V  D  V  G  C  G  G  G  I  L  S  E  :  P  L  A  R  M  G  A  T  V  T  G  V  D  A  V  D  K  N  I  K  I  A  R  L  H  A  :  D  L  D  P  Q  T  S  S  I  E  Y  R  C  T  T  A   : E  S  L  V  E  E  Q  R  Q  F  D  A  V  I  A  L  E  :  V  I  E  H  V  A  D  P  A  G  F  C  K  S  L  S  A  L  T  I  P  G  G  A  T  V  I  S  T  I  N  R  S  M  R  A  Y  A  T  A  I  V  A  A  E  Y  L  L  H  W  :  L  P  K  G  T  H  Q  W  S  S  F  L  T  P  E  E  L  V  L  I  L  Q  R  A  S  I  S  :  V  Q  E  M  A  G  F  V  Y  N  P  L  T  G  R  W  S  L  S  D  D  I  S  V  N  F  I  A  F  G  T  K  S  A  K  K  D  E  T  L  D  *  V  T  I  *  L  S  I  L  F  C  C  *  S  L  N  P  F  C  M  *  S  L  F  Q  F  C  W  M  M  N  A  I  S  I  C  *  N  M  N  I  H  I  T  S  S  *  L  E  *  K  C  T  I  S  K  F  Q  I  H  V  Y  Y  L  *  L  I  K  F  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35030" stop="34753"/>
                    <exon start="34357" stop="34268"/>
                    <exon start="33766" stop="33688"/>
                    <exon start="33465" stop="33388"/>
                    <exon start="31998" stop="31950"/>
                    <exon start="30795" stop="30746"/>
                    <exon start="30021" stop="29872"/>
                    <exon start="29406" stop="29326"/>
                    <exon start="29220" stop="29095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFMASKLVLNRLRSLCRVSQLSDVRFDKLRDPVSIFSTSQNQVTWRSYSEASQPTPINPPPPPPPSPNTSTTTSSSLNEFELAKFSAIAETWWDAEGPFKPLHLMNPTRLAFIRSTLCRHFRKDPNCTRPFEGLKFVDVGCGGGILSEPLARMGATVTGVDAVDKNIKIARLHADLDPQTSSIEYRCTTAESLVEEQRQFDAVIALEVIEHVADPAGFCKSLSALTIPGGATVISTINRSMRAYATAIVAAEYLLHWLPKGTHQWSSFLTPEELVLILQRASISVQEMAGFVYNPLTGRWSLSDDISVNFIAFGTKSAKKDETLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="46548" PGL_stop="36495"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46548" e_stop="46355"/>
            <exon e_start="46270" e_stop="46101"/>
            <exon e_start="46015" e_stop="45944"/>
            <exon e_start="45350" e_stop="45200"/>
            <exon e_start="42411" e_stop="42303"/>
            <exon e_start="42221" e_stop="42104"/>
            <exon e_start="40487" e_stop="40340"/>
            <exon e_start="39483" e_stop="39235"/>
            <exon e_start="38721" e_stop="38596"/>
            <exon e_start="38463" e_stop="38363"/>
            <exon e_start="37361" e_stop="37287"/>
            <exon e_start="37125" e_stop="36495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46548" e_stop="46355" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46354" i_stop="46271" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46270" e_stop="46101" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46100" i_stop="46016" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46015" e_stop="45944" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45943" i_stop="45351" i_length="593"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45350" e_stop="45200" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.969">
            <gDNA_intron_boundary i_start="45199" i_stop="42412" i_length="2788"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42411" e_stop="42303" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42221" e_stop="42104" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40487" e_stop="40340" e_length="148"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.814">
            <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39483" e_stop="39235" e_length="249"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.920">
            <gDNA_intron_boundary i_start="39234" i_stop="38722" i_length="513"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="38721" e_stop="38596" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38595" i_stop="38464" i_length="132"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="38463" e_stop="38363" e_length="101"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38362" i_stop="37362" i_length="1001"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="37361" e_stop="37287" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.982">
            <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="37125" e_stop="36495" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46548" stop="46355"/>
              <exon start="46270" stop="46101"/>
              <exon start="46015" stop="45944"/>
              <exon start="45350" stop="45200"/>
              <exon start="42411" stop="42303"/>
              <exon start="42221" stop="42104"/>
              <exon start="40487" stop="40340"/>
              <exon start="39483" stop="39235"/>
              <exon start="38721" stop="38596"/>
              <exon start="38463" stop="38363"/>
              <exon start="37361" stop="37287"/>
              <exon start="37125" stop="36729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46518" stop="46355"/>
              <exon start="46270" stop="46101"/>
              <exon start="46015" stop="45959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46431" stop="46355"/>
              <exon start="46270" stop="46101"/>
              <exon start="46015" stop="45944"/>
              <exon start="45350" stop="45200"/>
              <exon start="42411" stop="42303"/>
              <exon start="42221" stop="42104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46256" stop="46101"/>
              <exon start="46015" stop="45944"/>
              <exon start="45350" stop="45200"/>
              <exon start="42411" stop="42322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45344" stop="45200"/>
              <exon start="42411" stop="42303"/>
              <exon start="42221" stop="42104"/>
              <exon start="40487" stop="40340"/>
              <exon start="39483" stop="39462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42335" stop="42303"/>
              <exon start="42221" stop="42104"/>
              <exon start="40487" stop="40340"/>
              <exon start="39483" stop="39259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42149" stop="42104"/>
              <exon start="40487" stop="40340"/>
              <exon start="39483" stop="39235"/>
              <exon start="38721" stop="38596"/>
              <exon start="38463" stop="38363"/>
              <exon start="37361" stop="37287"/>
              <exon start="37125" stop="37080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40440" stop="40340"/>
              <exon start="39483" stop="39235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37338" stop="37287"/>
              <exon start="37125" stop="36657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37337" stop="37287"/>
              <exon start="37125" stop="36495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37337" stop="37287"/>
              <exon start="37125" stop="36498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37337" stop="37287"/>
              <exon start="37125" stop="36552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG : GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG : GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG : GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG : AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG : GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG : TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG : CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG : GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG : ATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG : ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG : CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGTCGATGCAAATCCTATCAATTTGTAAAGTTTGTACCATTTAAACGTAAAACTTATGGGTCA</gDNA_template>
            <first_frame> V  S  V  F  F  D  K  P  P  K  R  H  K  K  S  I  H  E  N  S  S  I  V  T  S  H  A  T  S  T  Q  P  A  S  S  R  H  C  Y  A  R  Y  G  S  *  E  L  K  R  L  P  S  *  R  T  Q  A  T  R  K  *  S  I  Q  R :   A  *  V  F  A  S  Y  *  S  V  H  T  S  D  *  V  E  R  *  E  C  G  V  L  C  *  P  C  V  C  S  L  Q  I  G  G  I  W  K  R  N  T  G  W  N  *  S  Y  *  N  *  P  *  I  F  K   : G  L  L  *  E  R  S  C  I  F  G  N  G  E  V  Q  R  C  T  Q  G  F  S  T   : G  Q  E  I  M  S  K  R  P  R  C  Y  Q  K  I  E  G  M  *  E  S  C  H  E  A  K  I  *  R  S  Y  F  C  P  R  I  S  E  A  F  S  S  *  L  Y  *  L  S  F  C  R :   G  G  A  S  I  C  W  C  K  N  R  G  R  C  C  N  I  R  F  C  E  E  D  A  G  *  L  Q  K  P  E  E  L  A  *  E  :  V  C  L  P  N  S  T  A  N  K  R  N  V  A  S  T  A  L  P  C  *  H  C  C  S  R  R  E  A  L  H  C  M  W  *  C  T  W  S   : V  L  *  P  P  K  Y  F  R  A  Q  W  A  S  I  R  R  Q  S  V  S  V  Q  W  *  F  C  *  *  R  V  F  L  S  R  G  H  I  D  I  I  C  L  Q  V  H  V  S  I  S :   Y  T  P  G  E  R  K  S  R  K  Q  E  H  E  Q  N  I  W  V  *  G  R  G  Q  I  Q  V  K  *  N  I  C  G  T  L  C  R  S  V  L  L  L  T  F  G  P  C  H  K  *  E  S  L  C  S  T  W  R  S  F  *  C  *  W  R  E  A  L  *  Y  *  S  N  *  S  V  L  *  A  P  R  R  G :   V  N  V  *  I  V  V  E  *  S  T  T  S  A  W  *  R  T  *  *  T  R  C  W  S  F  F  R  G  R  R  N  *  K  I  L  A  G  K  *  S  R :   F  S  G  A  I  S  *  S  E  G  *  R  L  *  D  *  A  *  R  Q  T  H  N  G  V  F  R  S  Q  L  L  *  P   : D  G  *  Q  G  C  F  Y  T  I  *  G  S  R  Y  E  A  K  Y  C  D  I  F  S  S   : A  T  S  *  C  Q  T  N  G  I  C  Q  Q  L  P  S  H  V  F  L  K  T  L  E  P  N  V  Q  Y  Y  N  R  C  D  L  L  S  D  *  P  R  A  Y  T  S  G  G  K  R  A  S  T  Y  S  Q  L  A  A  V  S  L  F  G  Q  L  P  D  L  P  A  A  C  E  D  P  H  L  L  C  F  D  *  G  V  N  T  F  S  T  I  T  M  S  C  G  G  L  S  S  V  L  F  I  F  L  F  V  R  L  L  H  F  S  F  L  L  E  C  S  N  W  E  K  L  *  *  V  E  F  W  F  F  L  F  S  *  L  K  *  S  I  I  F  S  P  P  N  Q  P  S  V  T  V  T  M  S  I  L  P  L  D  C  R  L  S  V  P  V  A  R  L  L  V  F  P  T  D  F  V  S  L  L  I  M  L  N  S  F  *  *  V  D  A  N  P  I  N  L  *  S  L  Y  H  L  N  V  K  L  M  G   </first_frame>
            <second_frame>  S  Q  S  S  L  T  N  P  Q  S  A  I  K  R  V  F  M  K  I  P  V  L  *  L  R  T  Q  H  L  L  S  Q  P  P  V  A  I  V  M  P  G  M  E  A  E  N  S  N  A  S  R  A  E  E  L  K  Q  L  A  N  E  A  F  K   : G  H  K  Y  S  Q  A  I  D  L  Y  T  Q  A  I  E  L  N  G  E  N  A  V  Y  Y  A  N  R  A  F  A  H  S  K  L  E  E  Y  G  S  A  I  Q  D  G  T  R  A  I  E  I  D  P  R  Y  S  K  :  G  Y  Y  R  R  G  A  A  Y  L  A  M  G  K  F  K  D  A  L  K  D  F  Q  Q  :  V  K  K  L  C  P  N  D  P  D  A  T  K  K  L  K  E  C  E  K  A  V  M  K  L  K  F  E  E  A  I  S  V  P  E  S  Q  R  R  S  V  A  D  S  I  D  Y  R  S  V   : E  V  E  P  Q  Y  A  G  A  R  I  E  G  D  V  V  T  L  D  F  V  K  K  M  L  D  D  F  K  N  Q  K  N  L  H  K  R :   Y  A  Y  Q  I  V  L  Q  T  R  E  M  L  R  A  L  P  S  L  V  D  I  V  V  P  E  G  K  H  F  T  V  C  G  D  V  H  G  Q  :  F  Y  D  L  L  N  I  F  E  L  N  G  L  P  S  E  D  N  P  Y  L  F  N  G  D  F  V  D  R  G  S  F  S  L  E  V  I  L  T  L  F  A  F  K  C  M  C  P  S   : A  I  H  L  A  R  G  N  H  E  S  K  S  M  N  K  I  Y  G  F  E  G  E  V  R  S  K  L  S  E  I  F  V  E  L  F  A  E  V  F  C  C  L  P  L  A  H  V  I  N  E  K  V  F  V  V  H  G  G  L  F  S  V  D  G  V  K  L  S  D  I  R  A  I  D  R  F  C  E  P  P  E  E   : G  L  M  C  E  L  L  W  S  D  P  Q  P  Q  P  G  R  G  P  S  K  R  G  V  G  L  S  F  G  G  D  V  T  K  R  F  L  Q  E  N  N  L   : D  L  V  V  R  S  H  E  V  K  D  E  G  Y  E  I  E  H  D  G  K  L  I  T  V  F  S  A  P  N  Y  C  D  Q  :  M  G  N  K  G  A  F  I  R  F  E  A  P  D  M  K  P  N  I  V  T  F  S  A  V  :  P  H  P  D  V  K  P  M  A  Y  A  N  N  F  L  R  M  F  S  *  K  L  W  N  L  T  F  S  I  T  I  D  A  T  F  C  L  T  D  Q  E  H  T  H  Q  E  A  K  E  L  V  L  T  A  N  *  L  Q  C  H  Y  S  D  N  F  L  T  C  P  Q  H  V  R  I  L  T  S  F  V  L  I  K  A  *  T  L  S  L  R  *  Q  C  R  V  V  D  C  P  L  Y  Y  L  Y  S  S  L  *  D  C  Y  T  S  H  F  F  *  N  V  Q  I  G  K  S  F  D  K  S  N  F  G  F  F  Y  F  L  S  *  N  S  L  *  F  F  P  H  P  I  S  Q  V  L  L  L  R  C  L  F  Y  H  W  I  V  V  C  L  C  L  W  P  D  Y  W  C  F  L  L  I  L  F  R  Y  *  *  C  L  T  A  S  N  E  S  M  Q  I  L  S  I  C  K  V  C  T  I  *  T  *  N  L  W  V  </second_frame>
            <third_frame>   L  S  L  L  *  Q  T  P  K  A  P  *  K  E  Y  S  *  K  F  Q  Y  C  D  F  A  R  N  I  Y  S  A  S  L  Q  S  P  L  L  C  P  V  W  K  L  R  T  Q  T  P  P  E  L  K  N  S  S  N  S  Q  M  K  H  S  K  :  G  I  S  I  R  K  L  L  I  C  T  H  K  R  L  S  *  T  V  R  M  R  C  T  M  L  T  V  R  L  L  T  P  N  W  R  N  M  E  A  Q  Y  R  M  E  L  E  L  L  K  L  T  L  D  I  Q  R :   V  I  I  G  E  E  L  H  I  W  Q  W  G  S  S  K  M  H  S  R  I  F  N  R :   S  R  N  Y  V  Q  T  T  Q  M  L  P  K  N  *  R  N  V  R  K  L  S  *  S  *  N  L  K  K  L  F  L  S  Q  N  L  R  G  V  Q  *  L  T  L  L  I  I  V  L  *  :  R  W  S  L  N  M  L  V  Q  E  *  R  E  M  L  *  H  *  I  L  *  R  R  C  W  M  T  S  K  T  R  R  T  C  I  R   : G  M  P  T  K  *  Y  C  K  Q  E  K  C  C  E  H  C  P  P  L  L  T  L  L  F  P  K  G  S  T  S  L  Y  V  V  M  Y  M  V  S :   F  M  T  S  *  I  F  S  S  S  M  G  F  H  Q  K  T  I  R  I  C  S  M  V  I  L  L  I  E  G  L  S  L  *  R  S  Y  *  H  Y  L  P  S  S  A  C  V  H  Q  :  L  Y  T  W  R  E  E  I  T  K  A  R  A  *  T  K  Y  M  G  L  R  A  R  S  D  P  S  *  V  K  Y  L  W  N  S  L  Q  K  C  S  V  A  Y  L  W  P  M  S  *  M  R  K  S  L  *  Y  M  E  V  F  L  V  L  M  A  *  S  S  L  I  L  E  Q  L  I  G  F  V  S  P  Q  K  R  :  G  *  C  V  N  C  C  G  V  I  H  N  L  S  L  V  E  D  L  V  N  E  V  L  V  F  L  S  G  E  T  *  L  K  D  S  C  R  K  I  I  *  :  I  *  W  C  D  L  M  K  *  R  M  K  V  M  R  L  S  M  T  A  N  S  *  R  C  F  P  L  P  I  I  V  T  R :   W  V  T  R  V  L  L  Y  D  L  R  L  P  I  *  S  Q  I  L  *  H  F  Q  Q  C :   H  I  L  M  S  N  Q  W  H  M  P  T  T  S  F  A  C  F  L  K  N  S  G  T  *  R  S  V  L  Q  S  M  R  P  F  V  *  L  T  K  S  I  H  I  R  R  Q  K  S  *  Y  L  Q  P  I  S  C  S  V  I  I  R  T  T  S  *  L  A  R  S  M  *  G  S  S  P  P  L  F  *  L  R  R  K  H  F  L  Y  D  N  N  V  V  W  W  I  V  L  C  I  I  Y  I  P  L  C  K  I  V  T  L  L  I  S  F  R  M  F  K  L  G  K  A  L  I  S  R  I  L  V  F  S  I  F  L  V  K  I  V  Y  N  F  F  P  T  Q  S  A  K  C  Y  C  Y  D  V  Y  F  T  I  G  L  S  F  V  C  A  C  G  Q  I  T  G  V  S  Y  *  F  C  F  V  I  N  N  A  *  Q  L  L  M  S  R  C  K  S  Y  Q  F  V  K  F  V  P  F  K  R  K  T  Y  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46478" stop="46355"/>
                    <exon start="46270" stop="46101"/>
                    <exon start="46015" stop="45944"/>
                    <exon start="45350" stop="45200"/>
                    <exon start="42411" stop="42303"/>
                    <exon start="42221" stop="42104"/>
                    <exon start="40487" stop="40340"/>
                    <exon start="39483" stop="39235"/>
                    <exon start="38721" stop="38596"/>
                    <exon start="38463" stop="38363"/>
                    <exon start="37361" stop="37287"/>
                    <exon start="37125" stop="37066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTQHLLSQPPVAIVMPGMEAENSNASRAEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHSKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLKECEKAVMKLKFEEAISVPESQRRSVADSIDYRSVEVEPQYAGARIEGDVVTLDFVKKMLDDFKNQKNLHKRYAYQIVLQTREMLRALPSLVDIVVPEGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIHLARGNHESKSMNKIYGFEGEVRSKLSEIFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPHPDVKPMAYANNFLRMFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36884" stop="36597"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRKHFLYDNNVVWWIVLCIIYIPLCKIVTLLISFRMFKLGKALISRILVFSIFLVKIVYNFFPTQSAKCYCYDVYFTIGLSFVCACGQITGVSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46518" e_stop="46355"/>
            <exon e_start="46270" e_stop="46101"/>
            <exon e_start="46015" e_stop="45944"/>
            <exon e_start="45350" e_stop="45200"/>
            <exon e_start="44226" e_stop="44014"/>
            <exon e_start="42411" e_stop="42303"/>
            <exon e_start="42221" e_stop="42104"/>
            <exon e_start="40487" e_stop="40340"/>
            <exon e_start="39483" e_stop="39235"/>
            <exon e_start="38721" e_stop="38596"/>
            <exon e_start="38463" e_stop="38363"/>
            <exon e_start="37361" e_stop="37287"/>
            <exon e_start="37125" e_stop="36495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46518" e_stop="46355" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46354" i_stop="46271" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46270" e_stop="46101" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46100" i_stop="46016" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46015" e_stop="45944" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45943" i_stop="45351" i_length="593"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45350" e_stop="45200" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.996">
            <gDNA_intron_boundary i_start="45199" i_stop="44227" i_length="973"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44226" e_stop="44014" e_length="213"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="44013" i_stop="42412" i_length="1602"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42411" e_stop="42303" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42302" i_stop="42222" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42221" e_stop="42104" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="42103" i_stop="40488" i_length="1616"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40487" e_stop="40340" e_length="148"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.814">
            <gDNA_intron_boundary i_start="40339" i_stop="39484" i_length="856"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39483" e_stop="39235" e_length="249"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.920">
            <gDNA_intron_boundary i_start="39234" i_stop="38722" i_length="513"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="38721" e_stop="38596" e_length="126"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38595" i_stop="38464" i_length="132"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="38463" e_stop="38363" e_length="101"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38362" i_stop="37362" i_length="1001"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="37361" e_stop="37287" e_length="75"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.982">
            <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="37125" e_stop="36495" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46518" stop="46355"/>
              <exon start="46270" stop="46101"/>
              <exon start="46015" stop="45959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46504" stop="46355"/>
              <exon start="46270" stop="46101"/>
              <exon start="46015" stop="45944"/>
              <exon start="45350" stop="45200"/>
              <exon start="44226" stop="44014"/>
              <exon start="42411" stop="42303"/>
              <exon start="42221" stop="42104"/>
              <exon start="40487" stop="40340"/>
              <exon start="39483" stop="39235"/>
              <exon start="38721" stop="38596"/>
              <exon start="38463" stop="38363"/>
              <exon start="37361" stop="37287"/>
              <exon start="37125" stop="36731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46433" stop="46355"/>
              <exon start="46270" stop="46101"/>
              <exon start="46015" stop="45944"/>
              <exon start="45350" stop="45200"/>
              <exon start="44226" stop="44014"/>
              <exon start="42411" stop="42303"/>
              <exon start="42221" stop="42104"/>
              <exon start="40487" stop="40340"/>
              <exon start="39483" stop="39235"/>
              <exon start="38721" stop="38596"/>
              <exon start="38463" stop="38363"/>
              <exon start="37361" stop="37287"/>
              <exon start="37125" stop="37066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42335" stop="42303"/>
              <exon start="42221" stop="42104"/>
              <exon start="40487" stop="40340"/>
              <exon start="39483" stop="39259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42149" stop="42104"/>
              <exon start="40487" stop="40340"/>
              <exon start="39483" stop="39235"/>
              <exon start="38721" stop="38596"/>
              <exon start="38463" stop="38363"/>
              <exon start="37361" stop="37287"/>
              <exon start="37125" stop="37080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40440" stop="40340"/>
              <exon start="39483" stop="39235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37338" stop="37287"/>
              <exon start="37125" stop="36657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37337" stop="37287"/>
              <exon start="37125" stop="36495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37337" stop="37287"/>
              <exon start="37125" stop="36498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37337" stop="37287"/>
              <exon start="37125" stop="36552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG : GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG : GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG : GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG : GATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAG : AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG : GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG : TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG : CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG : GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG : ATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG : ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG : CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGTCGATGCAAATCCTATCAATTTGTAAAGTTTGTACCATTTAAACGTAAAACTTATGGGTCA</gDNA_template>
            <first_frame> R  H  K  K  S  I  H  E  N  S  S  I  V  T  S  H  A  T  S  T  Q  P  A  S  S  R  H  C  Y  A  R  Y  G  S  *  E  L  K  R  L  P  S  *  R  T  Q  A  T  R  K  *  S  I  Q  R :   A  *  V  F  A  S  Y  *  S  V  H  T  S  D  *  V  E  R  *  E  C  G  V  L  C  *  P  C  V  C  S  L  Q  I  G  G  I  W  K  R  N  T  G  W  N  *  S  Y  *  N  *  P  *  I  F  K   : G  L  L  *  E  R  S  C  I  F  G  N  G  E  V  Q  R  C  T  Q  G  F  S  T   : G  Q  E  I  M  S  K  R  P  R  C  Y  Q  K  I  E  G  M  *  E  S  C  H  E  A  K  I  *  R  S  Y  F  C  P  R  I  S  E  A  F  S  S  *  L  Y  *  L  S  F  C  R :   I  R  P  W  L  I  I  C  S  H  Q  N  N  C  C  I  S  G  S  S  T  N  G  S  S  G  G  I  Y  G  D  *  G  S  H  N  G  G  S  S  S  F  G  S  L  I  G  G  L  D  N  I  S  L  G  T  L  Q  *  W  F  L  Y  Q  E  S  N  T  *  I  R :   G  G  A  S  I  C  W  C  K  N  R  G  R  C  C  N  I  R  F  C  E  E  D  A  G  *  L  Q  K  P  E  E  L  A  *  E  :  V  C  L  P  N  S  T  A  N  K  R  N  V  A  S  T  A  L  P  C  *  H  C  C  S  R  R  E  A  L  H  C  M  W  *  C  T  W  S   : V  L  *  P  P  K  Y  F  R  A  Q  W  A  S  I  R  R  Q  S  V  S  V  Q  W  *  F  C  *  *  R  V  F  L  S  R  G  H  I  D  I  I  C  L  Q  V  H  V  S  I  S :   Y  T  P  G  E  R  K  S  R  K  Q  E  H  E  Q  N  I  W  V  *  G  R  G  Q  I  Q  V  K  *  N  I  C  G  T  L  C  R  S  V  L  L  L  T  F  G  P  C  H  K  *  E  S  L  C  S  T  W  R  S  F  *  C  *  W  R  E  A  L  *  Y  *  S  N  *  S  V  L  *  A  P  R  R  G :   V  N  V  *  I  V  V  E  *  S  T  T  S  A  W  *  R  T  *  *  T  R  C  W  S  F  F  R  G  R  R  N  *  K  I  L  A  G  K  *  S  R :   F  S  G  A  I  S  *  S  E  G  *  R  L  *  D  *  A  *  R  Q  T  H  N  G  V  F  R  S  Q  L  L  *  P   : D  G  *  Q  G  C  F  Y  T  I  *  G  S  R  Y  E  A  K  Y  C  D  I  F  S  S   : A  T  S  *  C  Q  T  N  G  I  C  Q  Q  L  P  S  H  V  F  L  K  T  L  E  P  N  V  Q  Y  Y  N  R  C  D  L  L  S  D  *  P  R  A  Y  T  S  G  G  K  R  A  S  T  Y  S  Q  L  A  A  V  S  L  F  G  Q  L  P  D  L  P  A  A  C  E  D  P  H  L  L  C  F  D  *  G  V  N  T  F  S  T  I  T  M  S  C  G  G  L  S  S  V  L  F  I  F  L  F  V  R  L  L  H  F  S  F  L  L  E  C  S  N  W  E  K  L  *  *  V  E  F  W  F  F  L  F  S  *  L  K  *  S  I  I  F  S  P  P  N  Q  P  S  V  T  V  T  M  S  I  L  P  L  D  C  R  L  S  V  P  V  A  R  L  L  V  F  P  T  D  F  V  S  L  L  I  M  L  N  S  F  *  *  V  D  A  N  P  I  N  L  *  S  L  Y  H  L  N  V  K  L  M  G   </first_frame>
            <second_frame>  A  I  K  R  V  F  M  K  I  P  V  L  *  L  R  T  Q  H  L  L  S  Q  P  P  V  A  I  V  M  P  G  M  E  A  E  N  S  N  A  S  R  A  E  E  L  K  Q  L  A  N  E  A  F  K   : G  H  K  Y  S  Q  A  I  D  L  Y  T  Q  A  I  E  L  N  G  E  N  A  V  Y  Y  A  N  R  A  F  A  H  S  K  L  E  E  Y  G  S  A  I  Q  D  G  T  R  A  I  E  I  D  P  R  Y  S  K  :  G  Y  Y  R  R  G  A  A  Y  L  A  M  G  K  F  K  D  A  L  K  D  F  Q  Q  :  V  K  K  L  C  P  N  D  P  D  A  T  K  K  L  K  E  C  E  K  A  V  M  K  L  K  F  E  E  A  I  S  V  P  E  S  Q  R  R  S  V  A  D  S  I  D  Y  R  S  V   : G  S  G  P  G  S  S  Y  V  P  T  K  T  T  A  V  S  A  A  A  A  L  M  G  V  L  V  V  Y  M  G  T  K  A  A  T  M  V  A  A  A  A  S  A  A  L  L  V  V  L  I  T  F  L  W  G  R  C  S  D  G  F  F  T  K  S  R  T  L  E  L   : E  V  E  P  Q  Y  A  G  A  R  I  E  G  D  V  V  T  L  D  F  V  K  K  M  L  D  D  F  K  N  Q  K  N  L  H  K  R :   Y  A  Y  Q  I  V  L  Q  T  R  E  M  L  R  A  L  P  S  L  V  D  I  V  V  P  E  G  K  H  F  T  V  C  G  D  V  H  G  Q  :  F  Y  D  L  L  N  I  F  E  L  N  G  L  P  S  E  D  N  P  Y  L  F  N  G  D  F  V  D  R  G  S  F  S  L  E  V  I  L  T  L  F  A  F  K  C  M  C  P  S   : A  I  H  L  A  R  G  N  H  E  S  K  S  M  N  K  I  Y  G  F  E  G  E  V  R  S  K  L  S  E  I  F  V  E  L  F  A  E  V  F  C  C  L  P  L  A  H  V  I  N  E  K  V  F  V  V  H  G  G  L  F  S  V  D  G  V  K  L  S  D  I  R  A  I  D  R  F  C  E  P  P  E  E   : G  L  M  C  E  L  L  W  S  D  P  Q  P  Q  P  G  R  G  P  S  K  R  G  V  G  L  S  F  G  G  D  V  T  K  R  F  L  Q  E  N  N  L   : D  L  V  V  R  S  H  E  V  K  D  E  G  Y  E  I  E  H  D  G  K  L  I  T  V  F  S  A  P  N  Y  C  D  Q  :  M  G  N  K  G  A  F  I  R  F  E  A  P  D  M  K  P  N  I  V  T  F  S  A  V  :  P  H  P  D  V  K  P  M  A  Y  A  N  N  F  L  R  M  F  S  *  K  L  W  N  L  T  F  S  I  T  I  D  A  T  F  C  L  T  D  Q  E  H  T  H  Q  E  A  K  E  L  V  L  T  A  N  *  L  Q  C  H  Y  S  D  N  F  L  T  C  P  Q  H  V  R  I  L  T  S  F  V  L  I  K  A  *  T  L  S  L  R  *  Q  C  R  V  V  D  C  P  L  Y  Y  L  Y  S  S  L  *  D  C  Y  T  S  H  F  F  *  N  V  Q  I  G  K  S  F  D  K  S  N  F  G  F  F  Y  F  L  S  *  N  S  L  *  F  F  P  H  P  I  S  Q  V  L  L  L  R  C  L  F  Y  H  W  I  V  V  C  L  C  L  W  P  D  Y  W  C  F  L  L  I  L  F  R  Y  *  *  C  L  T  A  S  N  E  S  M  Q  I  L  S  I  C  K  V  C  T  I  *  T  *  N  L  W  V  </second_frame>
            <third_frame>   P  *  K  E  Y  S  *  K  F  Q  Y  C  D  F  A  R  N  I  Y  S  A  S  L  Q  S  P  L  L  C  P  V  W  K  L  R  T  Q  T  P  P  E  L  K  N  S  S  N  S  Q  M  K  H  S  K  :  G  I  S  I  R  K  L  L  I  C  T  H  K  R  L  S  *  T  V  R  M  R  C  T  M  L  T  V  R  L  L  T  P  N  W  R  N  M  E  A  Q  Y  R  M  E  L  E  L  L  K  L  T  L  D  I  Q  R :   V  I  I  G  E  E  L  H  I  W  Q  W  G  S  S  K  M  H  S  R  I  F  N  R :   S  R  N  Y  V  Q  T  T  Q  M  L  P  K  N  *  R  N  V  R  K  L  S  *  S  *  N  L  K  K  L  F  L  S  Q  N  L  R  G  V  Q  *  L  T  L  L  I  I  V  L  *  :  D  Q  A  L  A  H  H  M  F  P  P  K  Q  L  L  Y  Q  R  Q  Q  H  *  W  E  F  W  W  Y  I  W  G  L  R  Q  P  Q  W  W  Q  Q  Q  L  R  Q  P  Y  W  W  S  *  *  H  F  F  G  D  V  A  V  M  V  S  L  P  R  V  E  H  L  N  *  :  R  W  S  L  N  M  L  V  Q  E  *  R  E  M  L  *  H  *  I  L  *  R  R  C  W  M  T  S  K  T  R  R  T  C  I  R   : G  M  P  T  K  *  Y  C  K  Q  E  K  C  C  E  H  C  P  P  L  L  T  L  L  F  P  K  G  S  T  S  L  Y  V  V  M  Y  M  V  S :   F  M  T  S  *  I  F  S  S  S  M  G  F  H  Q  K  T  I  R  I  C  S  M  V  I  L  L  I  E  G  L  S  L  *  R  S  Y  *  H  Y  L  P  S  S  A  C  V  H  Q  :  L  Y  T  W  R  E  E  I  T  K  A  R  A  *  T  K  Y  M  G  L  R  A  R  S  D  P  S  *  V  K  Y  L  W  N  S  L  Q  K  C  S  V  A  Y  L  W  P  M  S  *  M  R  K  S  L  *  Y  M  E  V  F  L  V  L  M  A  *  S  S  L  I  L  E  Q  L  I  G  F  V  S  P  Q  K  R  :  G  *  C  V  N  C  C  G  V  I  H  N  L  S  L  V  E  D  L  V  N  E  V  L  V  F  L  S  G  E  T  *  L  K  D  S  C  R  K  I  I  *  :  I  *  W  C  D  L  M  K  *  R  M  K  V  M  R  L  S  M  T  A  N  S  *  R  C  F  P  L  P  I  I  V  T  R :   W  V  T  R  V  L  L  Y  D  L  R  L  P  I  *  S  Q  I  L  *  H  F  Q  Q  C :   H  I  L  M  S  N  Q  W  H  M  P  T  T  S  F  A  C  F  L  K  N  S  G  T  *  R  S  V  L  Q  S  M  R  P  F  V  *  L  T  K  S  I  H  I  R  R  Q  K  S  *  Y  L  Q  P  I  S  C  S  V  I  I  R  T  T  S  *  L  A  R  S  M  *  G  S  S  P  P  L  F  *  L  R  R  K  H  F  L  Y  D  N  N  V  V  W  W  I  V  L  C  I  I  Y  I  P  L  C  K  I  V  T  L  L  I  S  F  R  M  F  K  L  G  K  A  L  I  S  R  I  L  V  F  S  I  F  L  V  K  I  V  Y  N  F  F  P  T  Q  S  A  K  C  Y  C  Y  D  V  Y  F  T  I  G  L  S  F  V  C  A  C  G  Q  I  T  G  V  S  Y  *  F  C  F  V  I  N  N  A  *  Q  L  L  M  S  R  C  K  S  Y  Q  F  V  K  F  V  P  F  K  R  K  T  Y  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46478" stop="46355"/>
                    <exon start="46270" stop="46101"/>
                    <exon start="46015" stop="45944"/>
                    <exon start="45350" stop="45200"/>
                    <exon start="44226" stop="44014"/>
                    <exon start="42411" stop="42303"/>
                    <exon start="42221" stop="42104"/>
                    <exon start="40487" stop="40340"/>
                    <exon start="39483" stop="39235"/>
                    <exon start="38721" stop="38596"/>
                    <exon start="38463" stop="38363"/>
                    <exon start="37361" stop="37287"/>
                    <exon start="37125" stop="37066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1713</number_coding_nucleotides>
                  <number_encoded_amino_acids>571</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTQHLLSQPPVAIVMPGMEAENSNASRAEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHSKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLKECEKAVMKLKFEEAISVPESQRRSVADSIDYRSVGSGPGSSYVPTKTTAVSAAAALMGVLVVYMGTKAATMVAAAASAALLVVLITFLWGRCSDGFFTKSRTLELEVEPQYAGARIEGDVVTLDFVKKMLDDFKNQKNLHKRYAYQIVLQTREMLRALPSLVDIVVPEGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIHLARGNHESKSMNKIYGFEGEVRSKLSEIFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPHPDVKPMAYANNFLRMFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36884" stop="36597"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRKHFLYDNNVVWWIVLCIIYIPLCKIVTLLISFRMFKLGKALISRILVFSIFLVKIVYNFFPTQSAKCYCYDVYFTIGLSFVCACGQITGVSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38465" e_stop="38363"/>
            <exon e_start="37361" e_stop="37287"/>
            <exon e_start="37125" e_stop="36495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.981"/>
          <exon-intron don_prob="0.989" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="38465" e_stop="38363" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38362" i_stop="37362" i_length="1001"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37361" e_stop="37287" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.982">
            <gDNA_intron_boundary i_start="37286" i_stop="37126" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37125" e_stop="36495" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38465" stop="38363"/>
              <exon start="37361" stop="37287"/>
              <exon start="37125" stop="36551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37355" stop="37287"/>
              <exon start="37125" stop="36752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37338" stop="37287"/>
              <exon start="37125" stop="36657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37337" stop="37287"/>
              <exon start="37125" stop="36495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37337" stop="37287"/>
              <exon start="37125" stop="36498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37337" stop="37287"/>
              <exon start="37125" stop="36552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG : ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG : CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGTCGATGCAAATCCTATCAATTTGTAAAGTTTGTACCATTTAAACGTAAAACTTATGGGTCA</gDNA_template>
            <first_frame> R  F  S  G  A  I  S  *  S  E  G  *  R  L  *  D  *  A  *  R  Q  T  H  N  G  V  F  R  S  Q  L  L  *  P   : D  G  *  Q  G  C  F  Y  T  I  *  G  S  R  Y  E  A  K  Y  C  D  I  F  S  S   : A  T  S  *  C  Q  T  N  G  I  C  Q  Q  L  P  S  H  V  F  L  K  T  L  E  P  N  V  Q  Y  Y  N  R  C  D  L  L  S  D  *  P  R  A  Y  T  S  G  G  K  R  A  S  T  Y  S  Q  L  A  A  V  S  L  F  G  Q  L  P  D  L  P  A  A  C  E  D  P  H  L  L  C  F  D  *  G  V  N  T  F  S  T  I  T  M  S  C  G  G  L  S  S  V  L  F  I  F  L  F  V  R  L  L  H  F  S  F  L  L  E  C  S  N  W  E  K  L  *  *  V  E  F  W  F  F  L  F  S  *  L  K  *  S  I  I  F  S  P  P  N  Q  P  S  V  T  V  T  M  S  I  L  P  L  D  C  R  L  S  V  P  V  A  R  L  L  V  F  P  T  D  F  V  S  L  L  I  M  L  N  S  F  *  *  V  D  A  N  P  I  N  L  *  S  L  Y  H  L  N  V  K  L  M  G   </first_frame>
            <second_frame>  D  L  V  V  R  S  H  E  V  K  D  E  G  Y  E  I  E  H  D  G  K  L  I  T  V  F  S  A  P  N  Y  C  D  Q  :  M  G  N  K  G  A  F  I  R  F  E  A  P  D  M  K  P  N  I  V  T  F  S  A  V  :  P  H  P  D  V  K  P  M  A  Y  A  N  N  F  L  R  M  F  S  *  K  L  W  N  L  T  F  S  I  T  I  D  A  T  F  C  L  T  D  Q  E  H  T  H  Q  E  A  K  E  L  V  L  T  A  N  *  L  Q  C  H  Y  S  D  N  F  L  T  C  P  Q  H  V  R  I  L  T  S  F  V  L  I  K  A  *  T  L  S  L  R  *  Q  C  R  V  V  D  C  P  L  Y  Y  L  Y  S  S  L  *  D  C  Y  T  S  H  F  F  *  N  V  Q  I  G  K  S  F  D  K  S  N  F  G  F  F  Y  F  L  S  *  N  S  L  *  F  F  P  H  P  I  S  Q  V  L  L  L  R  C  L  F  Y  H  W  I  V  V  C  L  C  L  W  P  D  Y  W  C  F  L  L  I  L  F  R  Y  *  *  C  L  T  A  S  N  E  S  M  Q  I  L  S  I  C  K  V  C  T  I  *  T  *  N  L  W  V  </second_frame>
            <third_frame>   I  *  W  C  D  L  M  K  *  R  M  K  V  M  R  L  S  M  T  A  N  S  *  R  C  F  P  L  P  I  I  V  T  R :   W  V  T  R  V  L  L  Y  D  L  R  L  P  I  *  S  Q  I  L  *  H  F  Q  Q  C :   H  I  L  M  S  N  Q  W  H  M  P  T  T  S  F  A  C  F  L  K  N  S  G  T  *  R  S  V  L  Q  S  M  R  P  F  V  *  L  T  K  S  I  H  I  R  R  Q  K  S  *  Y  L  Q  P  I  S  C  S  V  I  I  R  T  T  S  *  L  A  R  S  M  *  G  S  S  P  P  L  F  *  L  R  R  K  H  F  L  Y  D  N  N  V  V  W  W  I  V  L  C  I  I  Y  I  P  L  C  K  I  V  T  L  L  I  S  F  R  M  F  K  L  G  K  A  L  I  S  R  I  L  V  F  S  I  F  L  V  K  I  V  Y  N  F  F  P  T  Q  S  A  K  C  Y  C  Y  D  V  Y  F  T  I  G  L  S  F  V  C  A  C  G  Q  I  T  G  V  S  Y  *  F  C  F  V  I  N  N  A  *  Q  L  L  M  S  R  C  K  S  Y  Q  F  V  K  F  V  P  F  K  R  K  T  Y  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36884" stop="36597"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRKHFLYDNNVVWWIVLCIIYIPLCKIVTLLISFRMFKLGKALISRILVFSIFLVKIVYNFFPTQSAKCYCYDVYFTIGLSFVCACGQITGVSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0095F20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38464" stop="38363"/>
                    <exon start="37361" stop="37287"/>
                    <exon start="37125" stop="37066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPHPDVKPMAYANNFLRMFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="57043" PGL_stop="57906"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57043" e_stop="57906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="57043" e_stop="57906" e_length="864"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57043" stop="57906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57043" stop="57873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTATTCTTTTTTTAATCAATGACCTCTTATAGCTGCACGAAAGCAAAAAAATGAAAAATAAAATAAAAGGAAGCTTGGAGGAAAGAATACCCGCAAATGTCTTTGTTTTATTAATTTATAGCTACATGAAGAGAAAAAAGTATTTATAAGCTAGTAGAAGAAGTACAAACAAATACATATTCAGGTTTGGCCTTTAAACCCTCTGTTATGGGAGGAACTTTGGAACAAAAAGTGAAGAAAATTCCTGTAACATTCCTTCCATAGTCTCTCTGGGAAATTGATTATCAACACTTGCCTATCTGTTCATTATAGTCTCTCTGGGATATTGATTATCAACACTTGCCTATCTGTTCATTCTTACTGCCATGTTTATTATTGTAACAAATGAGGAATGTTGTGTTTGTACTGTTTTAAACTATATATGAAAACAAAAGGATAGTCTCGTGCGCTAACCTCTCGTTACTTAGGGGTCCAGGGAAGGGCTGGAACCATATTGGGTATATGTACACAATCTTACTACTTGGCATTTCAGTAAGAAGTTGTTTCCACAGCTTGAAACAATGACTTTGTGGTTGCAGTACACCACTTATCATTGTGCCAAGCCCACCTTCTATTAAATCATCTTTGAATGAACGCAAAAATATATTTTGACTTCAATCAGTGCCCAATGTAGTCAACTTGGCATTCTTCACAAGTTTTTGTACAGTGTGTGAGCTTCATGACCACTTTCTCAGCTTCTAATTGTGTTACTTGCAGGCATGGGCACTTAATTTTTTTCAGAAACTGAAGGCCGTCTTGAAGTTTGATCATTCAAATTCAAAGAGTCACTGGTCTCGCCCAACCTTCTGATGAGATGTGCTTG</gDNA_template>
            <first_frame> G  Y  S  F  F  N  Q  *  P  L  I  A  A  R  K  Q  K  N  E  K  *  N  K  R  K  L  G  G  K  N  T  R  K  C  L  C  F  I  N  L  *  L  H  E  E  K  K  V  F  I  S  *  *  K  K  Y  K  Q  I  H  I  Q  V  W  P  L  N  P  L  L  W  E  E  L  W  N  K  K  *  R  K  F  L  *  H  S  F  H  S  L  S  G  K  L  I  I  N  T  C  L  S  V  H  Y  S  L  S  G  I  L  I  I  N  T  C  L  S  V  H  S  Y  C  H  V  Y  Y  C  N  K  *  G  M  L  C  L  Y  C  F  K  L  Y  M  K  T  K  G  *  S  R  A  L  T  S  R  Y  L  G  V  Q  G  R  A  G  T  I  L  G  I  C  T  Q  S  Y  Y  L  A  F  Q  *  E  V  V  S  T  A  *  N  N  D  F  V  V  A  V  H  H  L  S  L  C  Q  A  H  L  L  L  N  H  L  *  M  N  A  K  I  Y  F  D  F  N  Q  C  P  M  *  S  T  W  H  S  S  Q  V  F  V  Q  C  V  S  F  M  T  T  F  S  A  S  N  C  V  T  C  R  H  G  H  L  I  F  F  R  N  *  R  P  S  *  S  L  I  I  Q  I  Q  R  V  T  G  L  A  Q  P  S  D  E  M  C  L </first_frame>
            <second_frame>  V  I  L  F  L  I  N  D  L  L  *  L  H  E  S  K  K  M  K  N  K  I  K  G  S  L  E  E  R  I  P  A  N  V  F  V  L  L  I  Y  S  Y  M  K  R  K  K  Y  L  *  A  S  R  R  S  T  N  K  Y  I  F  R  F  G  L  *  T  L  C  Y  G  R  N  F  G  T  K  S  E  E  N  S  C  N  I  P  S  I  V  S  L  G  N  *  L  S  T  L  A  Y  L  F  I  I  V  S  L  G  Y  *  L  S  T  L  A  Y  L  F  I  L  T  A  M  F  I  I  V  T  N  E  E  C  C  V  C  T  V  L  N  Y  I  *  K  Q  K  D  S  L  V  R  *  P  L  V  T  *  G  S  R  E  G  L  E  P  Y  W  V  Y  V  H  N  L  T  T  W  H  F  S  K  K  L  F  P  Q  L  E  T  M  T  L  W  L  Q  Y  T  T  Y  H  C  A  K  P  T  F  Y  *  I  I  F  E  *  T  Q  K  Y  I  L  T  S  I  S  A  Q  C  S  Q  L  G  I  L  H  K  F  L  Y  S  V  *  A  S  *  P  L  S  Q  L  L  I  V  L  L  A  G  M  G  T  *  F  F  S  E  T  E  G  R  L  E  V  *  S  F  K  F  K  E  S  L  V  S  P  N  L  L  M  R  C  A   </second_frame>
            <third_frame>   L  F  F  F  *  S  M  T  S  Y  S  C  T  K  A  K  K  *  K  I  K  *  K  E  A  W  R  K  E  Y  P  Q  M  S  L  F  Y  *  F  I  A  T  *  R  E  K  S  I  Y  K  L  V  E  E  V  Q  T  N  T  Y  S  G  L  A  F  K  P  S  V  M  G  G  T  L  E  Q  K  V  K  K  I  P  V  T  F  L  P  *  S  L  W  E  I  D  Y  Q  H  L  P  I  C  S  L  *  S  L  W  D  I  D  Y  Q  H  L  P  I  C  S  F  L  L  P  C  L  L  L  *  Q  M  R  N  V  V  F  V  L  F  *  T  I  Y  E  N  K  R  I  V  S  C  A  N  L  S  L  L  R  G  P  G  K  G  W  N  H  I  G  Y  M  Y  T  I  L  L  L  G  I  S  V  R  S  C  F  H  S  L  K  Q  *  L  C  G  C  S  T  P  L  I  I  V  P  S  P  P  S  I  K  S  S  L  N  E  R  K  N  I  F  *  L  Q  S  V  P  N  V  V  N  L  A  F  F  T  S  F  C  T  V  C  E  L  H  D  H  F  L  S  F  *  L  C  Y  L  Q  A  W  A  L  N  F  F  Q  K  L  K  A  V  L  K  F  D  H  S  N  S  K  S  H  W  S  R  P  T  F  *  *  D  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0095F20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 103 chains have been computed
$ 
$ memory statistics:
$ 144352 bytes spliced alignments in total
$ 68 spliced alignments have been stored
$ 2122 bytes was the average size of a spliced alignment
$ 16704 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 2088 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 105 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:31:15
-->
