<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:30:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724797" ref_strand="+" ref_description="SGN-E724797 [FC25AG07]">
      <seq>gaactacaactaagttccaacagttgtaacaagaaatacttgtcttagatagtaaaacccaaagttttgatcttttcattgttattcttcttctaataaccattttaagtttcatcaaagaaaacaatggtggttttaacagaacctgacaatgatcacttaccaataatcaacagcaattcttgcaaatccccctctttcttcaatgatattcctgtaatagacctctctaaacctgactccaagaacctcatcgttgaggcctgcgaagaattcggattctttaaagtcgtaaaccatgacgttcctatggaattcataagtaaactcgaatccgaagccatcaaattcttctcctctcccctctctgagaagctaaaagcagggcctgctgacccttttggctatggcaataaacaaatcggacaaagtggcgatatcggttgggttgaatacattctcctttcaacaaactctgaattcaattaccagaaattcgcatctgtattaggtgtcaatccagaaaacattcgagctgcggtgaatgattatgtgacagcagtgaagagaatgtcatgtgagattcttgaaaagttggcggagggattaaagattcatccgacgaatgttttcagtaagcttttgaaggatgaaaagagcgactctgttttcaggctgaatcattatcctccatgtcctgatattcaagaattcaatgccaaaaatttgattggatttggagaacataccgatccacaaatcatatcggtattaagatccaacaacacatccggccttcaaattttactcaaaaatggcaactgggtttctgtgccccctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3902" stop="5427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4201" g_stop="4733" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4734" i_stop="4816" i_length="83">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4817" g_stop="5127" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="844" r_length="311" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E724797" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4201" e_stop="4733"/>
          <exon e_start="4817" e_stop="5127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTACAACTAAGTTCCAACAGTTGTAACAAGAAATACTTGTCTTAGATAGTAAAACCCAAAGTTTTGATCTTTTCATTGTTATTCTTCTTCTAATAACCATTTTAAGTTTCATCAAAGAAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCGGTAAGTCATTAAAAGCAGAGCAAAACAGAGTGATGTCTTTTAATCTCGATTCTTGATTTTTGTTATTGTTATTGTTATTGCAGAGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTGAGATTCTTGAAAAGTTGGCGGAGGGATTAAAGATTCATCCGACGAATGTTTTCAGTAAGCTTTTGAAGGATGAAAAGAGCGACTCTGTTTTCAGGCTGAATCATTATCCTCCATGTCCTGATATTCAAGAATTCAATGCCAAAAATTTGATTGGATTTGGAGAACATACCGATCCACAAATCATATCGGTATTAAGATCCAACAACACATCCGGCCTTCAAATTTTACTCAAAAATGGCAACTGGTTTTCTGTGCCACCTGATC</genome_strand>
        <mrna_strand>GAACTACAACTAAGTTCCAACAGTTGTAACAAGAAATACTTGTCTTAGATAGTAAAACCCAAAGTTTTGATCTTTTCATTGTTATTCTTCTTCTAATAACCATTTTAAGTTTCATCAAAGAAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATGGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCG...................................................................................AGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTGAGATTCTTGAAAAGTTGGCGGAGGGATTAAAGATTCATCCGACGAATGTTTTCAGTAAGCTTTTGAAGGATGAAAAGAGCGACTCTGTTTTCAGGCTGAATCATTATCCTCCATGTCCTGATATTCAAGAATTCAATGCCAAAAATTTGATTGGATTTGGAGAACATACCGATCCACAAATCATATCGGTATTAAGATCCAACAACACATCCGGCCTTCAAATTTTACTCAAAAATGGCAACTGGGTTTCTGTGCCCCCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267672" ref_strand="+" ref_description="SGN-E267672 [cLEI-12-K15]">
      <seq>ttccaacagttgtaacaagaaatacttgtcttagatagtaaaacccaaagttttgatcttttcattgttattcttcttctaataaccattttaagtttcatcaaagaaaacaatggtggttttaacagaacctgacaatgatcacttaccaataatcaacagcaattcttgcaaatccccctctttcttcaatgatattcctgtaatagacctctctaaacctgactccaagaacctcatcgttgaggcctgcgaagaattcggattctttaaagtcgtaaaccatgacgttcctatagaattcataagtaaactcgaatccgaagccatcaaattcttctcctctcccctctctgagaagctaaaagcagggcctgctgacccttttggctatggcaataaacaaatcggacaaagtggcgatatcggttgggttgaatacattctcctttcaacaaactctgaattcaattaccagaaattcgcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3915" stop="5004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4215" g_stop="4704" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E267672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4215" e_stop="4704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACAGTTGTAACAAGAAATACTTGTCTTAGATAGTAAAACCCAAAGTTTTGATCTTTTCATTGTTATTCTTCTTCTAATAACCATTTTAAGTTTCATCAAAGAAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCT</genome_strand>
        <mrna_strand>TTCCAACAGTTGTAACAAGAAATACTTGTCTTAGATAGTAAAACCCAAAGTTTTGATCTTTTCATTGTTATTCTTCTTCTAATAACCATTTTAAGTTTCATCAAAGAAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233571" ref_strand="+" ref_description="SGN-E233571 [cLED-9-L23]">
      <seq>aacagttgtaacaagaaatacttgtcttagatagtaaaacccaaagttttgatcttttcattgttattcttcttctaataaccattttaagtttcatcaaagaaaacaatggtggttttaacagaacctgacaatgatcacttaccaataatcaacagcaattcttgcaaatccccctctttcttcaatgatattcctgtaatagacctctctaaacctgactccaagaacctcatcgttgaggcctgcgaagaattcggattctttaaagtcgtaaaccatgacgttcctatagaattcataagtaaactcgaatccgaagccatcaaattcttctcctctcccctctctgagaagctaaaagcagggcctgctgacccttttggctatggcaataaacaaatcggacaaagtggcgatatcggttgggttgaatacattctcctttcaacaaactctgaattcaattaccagaaattcgcatctgtattaggtgtcaatccagaaaacattcgagctgcggtgaatgattatgtgacagcagtgaagagaatgtcatgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3919" stop="5165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4219" g_stop="4733" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4734" i_stop="4816" i_length="83">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4817" g_stop="4865" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="564" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E233571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4219" e_stop="4733"/>
          <exon e_start="4817" e_stop="4865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGTAACAAGAAATACTTGTCTTAGATAGTAAAACCCAAAGTTTTGATCTTTTCATTGTTATTCTTCTTCTAATAACCATTTTAAGTTTCATCAAAGAAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCGGTAAGTCATTAAAAGCAGAGCAAAACAGAGTGATGTCTTTTAATCTCGATTCTTGATTTTTGTTATTGTTATTGTTATTGCAGAGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTGAG</genome_strand>
        <mrna_strand>AACAGTTGTAACAAGAAATACTTGTCTTAGATAGTAAAACCCAAAGTTTTGATCTTTTCATTGTTATTCTTCTTCTAATAACCATTTTAAGTTTCATCAAAGAAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCG...................................................................................AGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236451" ref_strand="+" ref_description="SGN-E236451 [cLED-13-L9]">
      <seq>aacagttgtaacaagaaatacttgtcttagatagtaaaacccaaagttttgatcttttcattgttattcttcttctaataaccattttaagtttcatcaaagaaaacaatggtggttttaacagaacctgacaatgatcacttaccaataatcaacagcaattcttgcaaatccccctctttcttcaatgatattcctgtaatagacctctctaaacctgactccaagaacctcatcgttgaggcctgcgaagaattcggattctttaaagtcgtaaaccatgacgttcctatagaattcataagtaaactcgaatccgaagccatcaaattcttctcctctcccctctctgagaagctaaaagcagggcctgctgacccttttggctatggcaataaacaaatcggacaaagtggcgatatcggttgggttgaatacattctcctttcaacaaactctgaattcaattaccagaaattcgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3919" stop="5003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4219" g_stop="4703" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E236451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4219" e_stop="4703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGTAACAAGAAATACTTGTCTTAGATAGTAAAACCCAAAGTTTTGATCTTTTCATTGTTATTCTTCTTCTAATAACCATTTTAAGTTTCATCAAAGAAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATC</genome_strand>
        <mrna_strand>AACAGTTGTAACAAGAAATACTTGTCTTAGATAGTAAAACCCAAAGTTTTGATCTTTTCATTGTTATTCTTCTTCTAATAACCATTTTAAGTTTCATCAAAGAAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267717" ref_strand="+" ref_description="SGN-E267717 [cLEI-12-M8]">
      <seq>aaatacttgtcttagatagtaaaacccaaagttttgatcttttcattgttattcttcttctaataaccattttaagtttcatcaaagaaaacaatggtggttttaacagaacctgacaatgatcacttaccaataatcaacagcaattcttgcaaatccccctctttcttcaatgatattcctgtaatagacctctctaaacctgactccaagaacctcatcgttgaggcctgcgaagaattcggattctttaaagtcgtaaaccatgacgttcctatagaattcataagtaaactcgaatccgaagccatcaaattcttctcctctcccctctctgagaagctaaaagcagggcctgctgacccttttggctatggcaataaacaaatcggacaaagtggcgatatcggttgggttgaatacattctcctttcaacaaactctgaattcaattaccagaaattcgcatctgtattaggtgtcaatccagaaaacattcgagctgcggtgaatgattatgtgacagcagtgaagagaatgtcatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3934" stop="5163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="4733" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4734" i_stop="4816" i_length="83">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4817" g_stop="4863" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="547" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E267717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="4733"/>
          <exon e_start="4817" e_stop="4863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTTGTCTTAGATAGTAAAACCCAAAGTTTTGATCTTTTCATTGTTATTCTTCTTCTAATAACCATTTTAAGTTTCATCAAAGAAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCGGTAAGTCATTAAAAGCAGAGCAAAACAGAGTGATGTCTTTTAATCTCGATTCTTGATTTTTGTTATTGTTATTGTTATTGCAGAGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTG</genome_strand>
        <mrna_strand>AAATACTTGTCTTAGATAGTAAAACCCAAAGTTTTGATCTTTTCATTGTTATTCTTCTTCTAATAACCATTTTAAGTTTCATCAAAGAAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCG...................................................................................AGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724036" ref_strand="+" ref_description="SGN-E724036 [FC22DE04]">
      <seq>tacagttataataacaaacaacaatttctaccaaagtttttcaaattctaaatttcatcaaaaaaacaacaacaatggtggtcttaacaaaacctgccattactcacttccctatagtgaaaaactctttcaaatcaccctcttacatcaatgatatccctgtaatagacctctctaaagccaactccaagaacctcatcgttaatgcctgcgaagaattcggattcttcaaagtcataaaccatgatgttcctatggaattcataagtaaactcgaatccgaagccgttaaattcttctcctctcccctctctgagaaactaaaggcagggcctgctgatccttttggttatggcaataaaaaaatcggacaaaatggcgatatcggttgggttgaatacattctcctttcaacaaattctgaattcaattaccagaaattcgcatctgtattaggtgtcaatccaaaaaacattcgggctgcggtgaatgattatgtgtcatcagtgaagaaaatgtcatgtgagattcttgaaaagttggcggagggattaaagattcaaccgacgaatgttttgagtaagctattgatggatgaaaagagcgactctgttttcaggctgaatcactatcctccatgtcctgatattcaagaattcaatgccaaaaatttaattggatttggagaacatactgatccacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="4078" stop="5344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4321" g_stop="4733" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="478" r_length="410" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4734" i_stop="4816" i_length="83">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4817" g_stop="5044" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="706" r_length="228" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E724036" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4321" e_stop="4733"/>
          <exon e_start="4817" e_stop="5044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCGGTAAGTCATTAAAAGCAGAGCAAAACAGAGTGATGTCTTTTAATCTCGATTCTTGATTTTTGTTATTGTTATTGTTATTGCAGAGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTGAGATTCTTGAAAAGTTGGCGGAGGGATTAAAGATTCATCCGACGAATGTTTTCAGTAAGCTTTTGAAGGATGAAAAGAGCGACTCTGTTTTCAGGCTGAATCATTATCCTCCATGTCCTGATATTCAAGAATTCAATGCCAAAAATTTGATTGGATTTGGAGAACATACCGATCCACAAAT</genome_strand>
        <mrna_strand>ACAACAATGGTGGTCTTAACAAAACCTGCCATTACTCACTTCCCTATAGTGAA-A--AACTCTTTCAAATCACCCTCTTACATCAATGATATCCCTGTAATAGACCTCTCTAAAGCCAACTCCAAGAACCTCATCGTTAATGCCTGCGAAGAATTCGGATTCTTCAAAGTCATAAACCATGATGTTCCTATGGAATTCATAAGTAAACTCGAATCCGAAGCCGTTAAATTCTTCTCCTCTCCCCTCTCTGAGAAACTAAAGGCAGGGCCTGCTGATCCTTTTGGTTATGGCAATAAAAAAATCGGACAAAATGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAATTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAAAAAACATTCG...................................................................................GGCTGCGGTGAATGATTATGTGTCATCAGTGAAGAAAATGTCATGTGAGATTCTTGAAAAGTTGGCGGAGGGATTAAAGATTCAACCGACGAATGTTTTGAGTAAGCTATTGATGGATGAAAAGAGCGACTCTGTTTTCAGGCTGAATCACTATCCTCCATGTCCTGATATTCAAGAATTCAATGCCAAAAATTTAATTGGATTTGGAGAACATACTGATCCACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253250" ref_strand="+" ref_description="SGN-E253250 [cLEG-26-G13]">
      <seq>acttaccaaaatcaaccatggtgatcttgtccaaacaaacctcattctttaatggtgttccattgattgacctctctaaacccgactccaagaacctcatcgttaatgcctgcgaagaattcggattcttcaaaatcataaaccatgacgttcctatggaattcataagtaaactcgaatccgaagccatcaagttcttctcctctcccctctctgagaagctaaaagcagggcctgctgatccttttggctatggcaataaacaaattggaacaaatggcgattgtggtcgggtcgaacacatcctcgtatcgacaaattctgaattcaattaccagaaatttgcatctatattaggtgtcaatccagaaaacattcgggctgcggttaatgattatgtttcagcagtgaagaaaatgtcctgtgatattcttgaaatgttggcggagggattaaagatttatccgacgaatgttttcagtaagcttttgatggacgaaaatagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="4094" stop="5244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4394" g_stop="4733" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="379" r_length="340" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4734" i_stop="4816" i_length="83">
            <donor d_prob="0.911" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4817" g_stop="4944" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="507" r_length="128" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E253250" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4394" e_stop="4733"/>
          <exon e_start="4817" e_stop="4944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCGGTAAGTCATTAAAAGCAGAGCAAAACAGAGTGATGTCTTTTAATCTCGATTCTTGATTTTTGTTATTGTTATTGTTATTGCAGAGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTGAGATTCTTGAAAAGTTGGCGGAGGGATTAAAGATTCATCCGACGAATGTTTTCAGTAAGCTTTTGAAGGATGAAAAGAGCG</genome_strand>
        <mrna_strand>CCTCATTCTTTAATGGTGTTCCATTGATTGACCTCTCTAAACCCGACTCCAAGAACCTCATCGTTAATGCCTGCGAAGAATTCGGATTCTTCAAAATCATAAACCATGACGTTCCTATGGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAGTTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGATCCTTTTGGCTATGGCAATAAACAAATTGGAACAAATGGCGATTGTGGTCGGGTCGAACACATCCTCGTATCGACAAATTCTGAATTCAATTACCAGAAATTTGCATCTATATTAGGTGTCAATCCAGAAAACATTCG...................................................................................GGCTGCGGTTAATGATTATGTTTCAGCAGTGAAGAAAATGTCCTGTGATATTCTTGAAATGTTGGCGGAGGGATTAAAGATTTATCCGACGAATGTTTTCAGTAAGCTTTTGATGGACGAAAATAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242261" ref_strand="+" ref_description="SGN-E242261 [cLED-37-L20]">
      <seq>ttctttaaagtcgtaaaccatgacgttcctatagaattcataagtaaactcgaatccgaagccatcaaattcttctcctctcccctctctgagaagctaaaagcagggcctgctgacccttttggctatggcaataaacaaatcggacaaagtggcgatatcggttgggttgaatacattctcctttcaacaaactctgaattcaattaccagaaattcgcatctgtattaggtgtcaatccagaaaacattcgagctgcggtgaatgattatgtgacagcagtgaagagaatgtcatgtgagattcttgaaaagttggcggagggattaaagattcatccgacgaatgttttcagtaagcttttgaaggatgaaaagagcgactctgttttcaggctgaatcattatcctccatgtcctgatattcaagaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="4180" stop="5298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4480" g_stop="4733" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4734" i_stop="4816" i_length="83">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4817" g_stop="4998" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="436" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E242261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4480" e_stop="4733"/>
          <exon e_start="4817" e_stop="4998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCGGTAAGTCATTAAAAGCAGAGCAAAACAGAGTGATGTCTTTTAATCTCGATTCTTGATTTTTGTTATTGTTATTGTTATTGCAGAGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTGAGATTCTTGAAAAGTTGGCGGAGGGATTAAAGATTCATCCGACGAATGTTTTCAGTAAGCTTTTGAAGGATGAAAAGAGCGACTCTGTTTTCAGGCTGAATCATTATCCTCCATGTCCTGATATTCAAGAATTCA</genome_strand>
        <mrna_strand>TTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCG...................................................................................AGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTGAGATTCTTGAAAAGTTGGCGGAGGGATTAAAGATTCATCCGACGAATGTTTTCAGTAAGCTTTTGAAGGATGAAAAGAGCGACTCTGTTTTCAGGCTGAATCATTATCCTCCATGTCCTGATATTCAAGAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354580" ref_strand="+" ref_description="SGN-E354580 [cTOS-17-O20]">
      <seq>tggttatggcaataagaaaatcggacaaaatggcgatatcggttgggttgaatacattctcctttcaacaaattctgaattcaattaccagaaattcgcatctgtattaggtgtcaatccagaaaacattcgggctgcggtgaatgattatgtgtcatcagtgaagaaaatgtcatgtgagattcttgaaaagttggcggagggattaaagattcaaccgacgaatgttttgagtaagctattgatggatgaaaagagcgactctgttttcaggctgaatcactatcctccatgtcctgatattcaagaattcaatgccaaaaatttaattggatttggagaacatactgatccacaaatcatgtcgattttaagatccaacaacacttccggtcttcaaattttactcaaaaatggcaactggttttctgttccatctgatcagaattcttttttcgtcaatgttggagactcattacaggtgatgacgaatggaaggtttaagagtgtgaaacatagggtgttgacaaacagtgtgaaatcaagactatcaatgatatattttggaggaccaccattgagtgaaaagatagcaccattgccatcactaatggaanggaaagacagtttatacaaagagtttacatggtttgagtancaaaagtcagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="4302" stop="5745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4602" g_stop="4733" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4734" i_stop="4816" i_length="83">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4817" g_stop="5165" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="481" r_length="349" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5166" i_stop="5261" i_length="96">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5262" g_stop="5454" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="671" r_length="190" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E354580" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4602" e_stop="4733"/>
          <exon e_start="4817" e_stop="5165"/>
          <exon e_start="5262" e_stop="5454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCGGTAAGTCATTAAAAGCAGAGCAAAACAGAGTGATGTCTTTTAATCTCGATTCTTGATTTTTGTTATTGTTATTGTTATTGCAGAGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTGAGATTCTTGAAAAGTTGGCGGAGGGATTAAAGATTCATCCGACGAATGTTTTCAGTAAGCTTTTGAAGGATGAAAAGAGCGACTCTGTTTTCAGGCTGAATCATTATCCTCCATGTCCTGATATTCAAGAATTCAATGCCAAAAATTTGATTGGATTTGGAGAACATACCGATCCACAAATCATATCGGTATTAAGATCCAACAACACATCCGGCCTTCAAATTTTACTCAAAAATGGCAACTGGTTTTCTGTGCCACCTGATCAGAGTTCTTTTTTCGTCAATGTTGGCGACTCATTACAGGTATGCGACATACCCTCATCAAAATTTCCTACTTGTCTAGTGAAATAGTATGATCGTTCAGAACTCATAAACTTAAAATCTTGAATTTGCGTGCAGGTGATGACTAATGGAAGGTTTAAGAGTGTGAAGCATAGGGTGTTGACAAACAGTGTAAAATCAAGATTATCAATGATATATTTTGGAGGACCACCATTGAGTGAAAAGATAGCACCATTGCCATCACTAATGGAAGGAGAAGAAAGCAGCTTGTACAAAGAGTTTACATGGTTTGAGTACAAAAAATCAGCTT</genome_strand>
        <mrna_strand>TGGTTATGGCAATAAGAAAATCGGACAAAATGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAATTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCG...................................................................................GGCTGCGGTGAATGATTATGTGTCATCAGTGAAGAAAATGTCATGTGAGATTCTTGAAAAGTTGGCGGAGGGATTAAAGATTCAACCGACGAATGTTTTGAGTAAGCTATTGATGGATGAAAAGAGCGACTCTGTTTTCAGGCTGAATCACTATCCTCCATGTCCTGATATTCAAGAATTCAATGCCAAAAATTTAATTGGATTTGGAGAACATACTGATCCACAAATCATGTCGATTTTAAGATCCAACAACACTTCCGGTCTTCAAATTTTACTCAAAAATGGCAACTGGTTTTCTGTTCCATCTGATCAGAATTCTTTTTTCGTCAATGTTGGAGACTCATTACAG................................................................................................GTGATGACGAATGGAAGGTTTAAGAGTGTGAAACATAGGGTGTTGACAAACAGTGTGAAATCAAGACTATCAATGATATATTTTGGAGGACCACCATTGAGTGAAAAGATAGCACCATTGCCATCACTAATGGAANG-GAA-AGA-CAGTTTATACAAAGAGTTTACATGGTTTGAGTANCAAAAGTCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352701" ref_strand="+" ref_description="SGN-E352701 [cTOS-11-B15]">
      <seq>aaggatgaaaagagcgactctgttttcaggctgaatcattatcctccatgtcctgatattcaagaattcaatgccaaaaatttgattggatttggagaacataccgatccacaaatcatatcggtattaagatccaacaacacatccggccttcaaattttactcaaaaatggcaactggttttctgtgccacctgatcagagttcttttttcgtcaatgttggcgactcattacaggtgatgactaatggaaggtttaagagtgtgaagcatagggtgttgacaaacagtgtaaaatcaagattatcaatgatatattttggaggaccaccattgagtgaaaagatagcaccattgccatcactaatggaaggagaagaaagcagcttgtacaaagagtttacatggtttgagtacaaaaaatcagctttcaaatctagactagcacaaaacagattaaccctgtttgagaaatttggaacctcatagtggtttttaacgagagacaaagccagaatttaaagtttatcattttatatgtacatatttaatagattcctccgcaaatataccatgtttggatcaaaagggtagtgatatcgaaaaactcaaatgattttcctttgataatataacaatatgttgttcgatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="4629" stop="5979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4929" g_stop="5165" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5166" i_stop="5261" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5262" g_stop="5688" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="664" r_length="427" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E352701" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4929" e_stop="5165"/>
          <exon e_start="5262" e_stop="5688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATGAAAAGAGCGACTCTGTTTTCAGGCTGAATCATTATCCTCCATGTCCTGATATTCAAGAATTCAATGCCAAAAATTTGATTGGATTTGGAGAACATACCGATCCACAAATCATATCGGTATTAAGATCCAACAACACATCCGGCCTTCAAATTTTACTCAAAAATGGCAACTGGTTTTCTGTGCCACCTGATCAGAGTTCTTTTTTCGTCAATGTTGGCGACTCATTACAGGTATGCGACATACCCTCATCAAAATTTCCTACTTGTCTAGTGAAATAGTATGATCGTTCAGAACTCATAAACTTAAAATCTTGAATTTGCGTGCAGGTGATGACTAATGGAAGGTTTAAGAGTGTGAAGCATAGGGTGTTGACAAACAGTGTAAAATCAAGATTATCAATGATATATTTTGGAGGACCACCATTGAGTGAAAAGATAGCACCATTGCCATCACTAATGGAAGGAGAAGAAAGCAGCTTGTACAAAGAGTTTACATGGTTTGAGTACAAAAAATCAGCTTTCAAATCTAGACTAGCACAAAACAGATTAACCCTGTTTGAGAAATTTGGAACCTCATAGTGGTTTTTAACGAGAGACAAAGCCAGAATTTAAAGTTTATCATTTTATATGTACATATTTAATAGATTCCTCCGCAAATATACCATGTTTGGATCAAAAGGGTAGTGATATCGAAAAACTCAAATGATTTTCCTTTGATAATATAACAATATGTTGTTCGATCAAACTCAAATGT</genome_strand>
        <mrna_strand>AAGGATGAAAAGAGCGACTCTGTTTTCAGGCTGAATCATTATCCTCCATGTCCTGATATTCAAGAATTCAATGCCAAAAATTTGATTGGATTTGGAGAACATACCGATCCACAAATCATATCGGTATTAAGATCCAACAACACATCCGGCCTTCAAATTTTACTCAAAAATGGCAACTGGTTTTCTGTGCCACCTGATCAGAGTTCTTTTTTCGTCAATGTTGGCGACTCATTACAG................................................................................................GTGATGACTAATGGAAGGTTTAAGAGTGTGAAGCATAGGGTGTTGACAAACAGTGTAAAATCAAGATTATCAATGATATATTTTGGAGGACCACCATTGAGTGAAAAGATAGCACCATTGCCATCACTAATGGAAGGAGAAGAAAGCAGCTTGTACAAAGAGTTTACATGGTTTGAGTACAAAAAATCAGCTTTCAAATCTAGACTAGCACAAAACAGATTAACCCTGTTTGAGAAATTTGGAACCTCATAGTGGTTTTTAACGAGAGACAAAGCCAGAATTTAAAGTTTATCATTTTATATGTACATATTTAATAGATTCCTCCGCAAATATACCATGTTTGGATCAAAAGGGTAGTGATATCGAAAAACTCAAATGATTTTCCTTTGATAATATAACAATATGTTGTTCGATCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552985" ref_strand="+" ref_description="SGN-E552985 [cTSB-5-K22]">
      <seq>agttcttttttcgtcatgttggcgactcattacaggtgatgactaatggaaggtttaagagtgtgaagcatagggtgttgacaaacagtgtaaaatcaagattatcaatgatatattttggaggaccaccattgagtgaaaagatagcaccattgccatcactaatggaaggagaagaaagcagcttgtacaaagagtttacatggtttgagtacaaaaaatcagctttcaaatctagactagcacaaaacagattaaccctgtttgagaaatttggaacctcatagtggtttttaacgagagacaaagccagaatttaaagtttatcattttatatgtacatatttaatagattcctccgcaaatataccatgtttggatcaaaagggtagtgatatcgaaaaactcaaatgattttcctttgataatataacaatatgttgttcgatcaaactcaaatgtttttatttctaaatgcttcatagatgtctatccttattccttgccttcatcgataaagattcatcccgagttatatttgaccccattattattattttttttaaaaaaattatattacaatttatttaaattcatagttgaaaaatttgtgtatgtgaaccattgatattaaagagattttttttttcctggatagggttatgagatggaatttatgaacaagtttgtgatagcgtgtactatcatcaaccaagttatatatatagtgatgatacttcacatgattattccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="4830" stop="6281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5130" g_stop="5165" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5166" i_stop="5261" i_length="96">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5262" g_stop="5981" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="755" r_length="720" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E552985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5130" e_stop="5165"/>
          <exon e_start="5262" e_stop="5981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTTTTTTCGTCAATGTTGGCGACTCATTACAGGTATGCGACATACCCTCATCAAAATTTCCTACTTGTCTAGTGAAATAGTATGATCGTTCAGAACTCATAAACTTAAAATCTTGAATTTGCGTGCAGGTGATGACTAATGGAAGGTTTAAGAGTGTGAAGCATAGGGTGTTGACAAACAGTGTAAAATCAAGATTATCAATGATATATTTTGGAGGACCACCATTGAGTGAAAAGATAGCACCATTGCCATCACTAATGGAAGGAGAAGAAAGCAGCTTGTACAAAGAGTTTACATGGTTTGAGTACAAAAAATCAGCTTTCAAATCTAGACTAGCACAAAACAGATTAACCCTGTTTGAGAAATTTGGAACCTCATAGTGGTTTTTAACGAGAGACAAAGCCAGAATTTAAAGTTTATCATTTTATATGTACATATTTAATAGATTCCTCCGCAAATATACCATGTTTGGATCAAAAGGGTAGTGATATCGAAAAACTCAAATGATTTTCCTTTGATAATATAACAATATGTTGTTCGATCAAACTCAAATGTTTTTATTTCTAAATGCTTCATAGATGTCTATCCTTATTCCTTGCCTTCATCGATAAAGATTCATCCCGAGTTATATTTGACCCCATTATTATTATTTTTTTTAAAAAAATTATATTACAATTTATTTAAATTCATAGTTGAAAAATTTGTGTATGTGAACCATTGATATTAAAGAGATTTTTTTTTTCCTGGATAGGGTTATGAGATGGAATTTATGAACAAGTTTGTGATAGCGTGTACTATCATCAACCAAGTTATATATATAGTGATGATACTTCACATGATTATTCCAA</genome_strand>
        <mrna_strand>AGTTCTTTTTTCGTC-ATGTTGGCGACTCATTACAG................................................................................................GTGATGACTAATGGAAGGTTTAAGAGTGTGAAGCATAGGGTGTTGACAAACAGTGTAAAATCAAGATTATCAATGATATATTTTGGAGGACCACCATTGAGTGAAAAGATAGCACCATTGCCATCACTAATGGAAGGAGAAGAAAGCAGCTTGTACAAAGAGTTTACATGGTTTGAGTACAAAAAATCAGCTTTCAAATCTAGACTAGCACAAAACAGATTAACCCTGTTTGAGAAATTTGGAACCTCATAGTGGTTTTTAACGAGAGACAAAGCCAGAATTTAAAGTTTATCATTTTATATGTACATATTTAATAGATTCCTCCGCAAATATACCATGTTTGGATCAAAAGGGTAGTGATATCGAAAAACTCAAATGATTTTCCTTTGATAATATAACAATATGTTGTTCGATCAAACTCAAATGTTTTTATTTCTAAATGCTTCATAGATGTCTATCCTTATTCCTTGCCTTCATCGATAAAGATTCATCCCGAGTTATATTTGACCCCATTATTATTATTTTTTTTAAAAAAATTATATTACAATTTATTTAAATTCATAGTTGAAAAATTTGTGTATGTGAACCATTGATATTAAAGAGATTTTTTTTTTCCTGGATAGGGTTATGAGATGGAATTTATGAACAAGTTTGTGATAGCGTGTACTATCATCAACCAAGTTATATATATAGTGATGATACTTCACATGATTATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542919" ref_strand="+" ref_description="SGN-E542919 [TUS-64-H12]">
      <seq>caaaatactcatttttttccatgtggggtttactttttgtgaatgaatatgaattaaagattcaatttttagtacatggtgttgataaagattatattgtgtttttatctttgttgtgtgctatttaatttttttttgaataagttgtgtgaattttatttggcaaagttttaagaaaataaatagaacttttgaatcattatttgtatgaattgtcatttaagttctcttacttagaaaaaatgctgaggttttttcccctttgaattcagttttagtcattggttgaacttaacttttgcaatcccctttcttcatttagactgttgaacttattttttttatcatgttatgcataatttcagcaatatgcttaagttcatgagtacagagtattacagggcctcttgccctcttaataattgtgattctctataaccaagtagtctctggatacgcgctttgtacgtgttacgtattcacgagtatgtaagatttaaaaaaattgcataaatgcaatatagcaatgcttttgacttaattagatatttcatctgtctcaacttatctgacattgtttggttgcgcatagagttttngaaaaaaaaaaaaaaactgttgtgataccttggatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8788" stop="10025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9088" g_stop="9725" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E542919" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9088" e_stop="9725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATACTCATTTTTTTCCATGTGGGGTTTACTTTTTGTGAATGAATATGAATTAAAGATTCAATTTTTAGTACATGGTGTTGATAAAGATTATATTGTGTTTTTATCTTTGTTGTGTGCTATTTAATTTTTTTTTGAATAAGTTGTGTGAATTTTATTTGGCAAAGTTTTAAGAAAATAAATAGAACTTTTGAATCATTATTTGTATGAATTGTCATTTAAGTTCTCTTACTTAGAAAAAATGCTGAGGTTTTTTCCCCTTTGAATTCAGTTTTAGTCATTGGTTGAACTTAACTTTTGCAATCCCCTTTCTTCATTTAGACTGTTGAACTTATTTTTTTTATCATGTTATGCATAATTTCAGCAATATGCTTAAGTTCATGAGTACAGAGTATTACAGGGCCTCTTGCCCTCTTAATAATTGTGATTCTCTATAACCAAGTAGTCTCTGGATACGCGCTTTGTACGTGTTACGTATTCACGAGTATGTAAGATTTAAAAAAATTGCATAAATGCAATATAGCAATGCTTTTGACTTAATTAGATATTTCATCTGTCTCAACTTATCTGACATTGTTTGGTTGCGCATAGAGTTTAAGAAAAAAAAAGAAAAGACTGTTGTGATACCTTGGATTTC</genome_strand>
        <mrna_strand>CAAAATACTCATTTTTTTCCATGTGGGGTTTACTTTTTGTGAATGAATATGAATTAAAGATTCAATTTTTAGTACATGGTGTTGATAAAGATTATATTGTGTTTTTATCTTTGTTGTGTGCTATTTAATTTTTTTTTGAATAAGTTGTGTGAATTTTATTTGGCAAAGTTTTAAGAAAATAAATAGAACTTTTGAATCATTATTTGTATGAATTGTCATTTAAGTTCTCTTACTTAGAAAAAATGCTGAGGTTTTTTCCCCTTTGAATTCAGTTTTAGTCATTGGTTGAACTTAACTTTTGCAATCCCCTTTCTTCATTTAGACTGTTGAACTTATTTTTTTTATCATGTTATGCATAATTTCAGCAATATGCTTAAGTTCATGAGTACAGAGTATTACAGGGCCTCTTGCCCTCTTAATAATTGTGATTCTCTATAACCAAGTAGTCTCTGGATACGCGCTTTGTACGTGTTACGTATTCACGAGTATGTAAGATTTAAAAAAATTGCATAAATGCAATATAGCAATGCTTTTGACTTAATTAGATATTTCATCTGTCTCAACTTATCTGACATTGTTTGGTTGCGCATAGAGTTTTNGAAAAAAAAA-AAAAAACTGTTGTGATACCTTGGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302914" ref_strand="+" ref_description="SGN-E302914 [cLEW-26-I16]">
      <seq>aaaatactcatttttttccatgtggggtttactttttgtgaatgaatatgaattaaagattcaatttttagtacatggtgttgataaagattatattgtgtttttatctttgttgtgtgctatttaatttttttttgaataagttgtgtgaattttatttggcaaagttttaagaaaataaatagaacttttgaatcattatttgtatgaattgtcatttaagttctcttacttagaaaaaatgctgaggttttttcccctttgaattcagttttagtcattggttgaacttaacttttgcaatcccctttcttcatttagactgttgaacttattttttttatcatgttatgcataatttcagcaatatgcttaagttcatgagtacagagtattacagggcctcttgccctcttaataattgtgattctctataaccaagtagtctctggatacgcgctttgtacgtgttacgtattcacgagtatgtaagatttaaaaaaattgcataaatgcaatatagcaatgcttttgacttaattagatatttcatctgtctcaacttatctgacattgtttggttgcgcatagagtttaagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="8789" stop="9994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9089" g_stop="9694" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E302914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9089" e_stop="9694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACTCATTTTTTTCCATGTGGGGTTTACTTTTTGTGAATGAATATGAATTAAAGATTCAATTTTTAGTACATGGTGTTGATAAAGATTATATTGTGTTTTTATCTTTGTTGTGTGCTATTTAATTTTTTTTTGAATAAGTTGTGTGAATTTTATTTGGCAAAGTTTTAAGAAAATAAATAGAACTTTTGAATCATTATTTGTATGAATTGTCATTTAAGTTCTCTTACTTAGAAAAAATGCTGAGGTTTTTTCCCCTTTGAATTCAGTTTTAGTCATTGGTTGAACTTAACTTTTGCAATCCCCTTTCTTCATTTAGACTGTTGAACTTATTTTTTTTATCATGTTATGCATAATTTCAGCAATATGCTTAAGTTCATGAGTACAGAGTATTACAGGGCCTCTTGCCCTCTTAATAATTGTGATTCTCTATAACCAAGTAGTCTCTGGATACGCGCTTTGTACGTGTTACGTATTCACGAGTATGTAAGATTTAAAAAAATTGCATAAATGCAATATAGCAATGCTTTTGACTTAATTAGATATTTCATCTGTCTCAACTTATCTGACATTGTTTGGTTGCGCATAGAGTTTAAGAAAAAAA</genome_strand>
        <mrna_strand>AAAATACTCATTTTTTTCCATGTGGGGTTTACTTTTTGTGAATGAATATGAATTAAAGATTCAATTTTTAGTACATGGTGTTGATAAAGATTATATTGTGTTTTTATCTTTGTTGTGTGCTATTTAATTTTTTTTTGAATAAGTTGTGTGAATTTTATTTGGCAAAGTTTTAAGAAAATAAATAGAACTTTTGAATCATTATTTGTATGAATTGTCATTTAAGTTCTCTTACTTAGAAAAAATGCTGAGGTTTTTTCCCCTTTGAATTCAGTTTTAGTCATTGGTTGAACTTAACTTTTGCAATCCCCTTTCTTCATTTAGACTGTTGAACTTATTTTTTTTATCATGTTATGCATAATTTCAGCAATATGCTTAAGTTCATGAGTACAGAGTATTACAGGGCCTCTTGCCCTCTTAATAATTGTGATTCTCTATAACCAAGTAGTCTCTGGATACGCGCTTTGTACGTGTTACGTATTCACGAGTATGTAAGATTTAAAAAAATTGCATAAATGCAATATAGCAATGCTTTTGACTTAATTAGATATTTCATCTGTCTCAACTTATCTGACATTGTTTGGTTGCGCATAGAGTTTAAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414087" ref_strand="+" ref_description="SGN-E414087 [STM-18-N6]">
      <seq>gagaagtccttaagattaccccggcattattatgctataagaataagaaaaatgaaaccgcgcttcacattgcagctgacgcaggacaaataaaagtggtgagtgaactacttagcacagaaggaaaggagacacttgtgaggatgatggataacattggagatacggccttgcacaaggctgttagaagtggacacattgacattgtcaggatgttggtgaaattattactagatcctgaacacgacttcccagccaataaggctgaggagacaccactttatttggctgcagagtctggttttcatgatgctttgattgaaatcttgaacatttgcaaggaaccaacttatgttgcaggtccatccaatcgaatacctctacatgcagccgtaattcttgaacacacggaatgcgtgagatcactatggcaatggaataaacctttatgcgaagaacctgatgaatggggttggaattcactgcactatgctgttaaacaaggattgacaggaatagtttccgatatgttaggatggaagaaatctttagcctaccttccagctggcagtgaaaatgactggacgacaacgtttcacgttgctgctagtgaaggtgatacattcatgatgtataagttattaaaccactgcccagattgttgggaaatgcttaatagcaatggccaaaatgctcttcatgttgccatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9600" stop="11097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9900" g_stop="10313" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10314" i_stop="10495" i_length="182">
            <donor d_prob="0.988" d_score="0.90"/>
            <acceptor a_prob="0.941" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10496" g_stop="10797" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="713" r_length="302" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E414087" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9900" e_stop="10313"/>
          <exon e_start="10496" e_stop="10797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGTCCTTAAGATTAGCCCGGCGTTGTTATGTTATAAGAATAAGAAAAATGAAACTGCGCTTCACATTGCAGCTAATGTAGGACAAAGTGAAGTGGTGAGTGAACTACTCAGCATACAAGGACAGGAGACAGTACTTGTGAGGATGAAGGATGACATTGGAGATACGGCCATGCACAAGGCCGTTAGAAGTGGACACATTGACATTGTTAGGATCTTGGTGAAATTATTACTAGATCCTGAACACGATTTCCCAGCAAATAAAGCAGAGGAGACACCACTTTATTTGGCAGCGGAGTCAGGTTTTCATGATGCTTTGATTGAAATCTTGAACGTTTGCAAAGAACCAACACATGTTGCAGGTCCATCCAATCGAACACCTCTACATGCAGCTGTGATTCAAGAACACACGGGTTAGTACGTACCTTCTGGGATGGTTTCATCCTATGGAAAATGATTAAATTTGTCCATCTACTTATAGAAAGAAGCTATAAATATATATACTCCTACAGTCGTATATACTTTATGATGTTGTTAAACGAAAAAAATCAATTCATTTATCATCATATATAACATTTGACTAATATATATCCAGAATGCGCGAGATTACTATGGCAATGGAATAAACCTTTATGTGAAGAATCTGATATATGGGGTTGGAATTCACTACACTATGCGGTTAAACAAGGATTGACAGAAATAGTTTCGGATATGTTGGGATGGAAGAAATCTTTAGCCTACCTTCCGGCAGGCAGTGAAAATGATTGGACTACAGCATTTCACATTGCAGCTAGTGAAGGTGATGCATTGATGATATATGAGTTATTAAACCACTGCCTGGATTGTTGGGACATGGTTGATAGCAATGGCCAAAATGCACTTCATGTTGCCATATTG</genome_strand>
        <mrna_strand>GAGAAGTCCTTAAGATTACCCCGGCATTATTATGCTATAAGAATAAGAAAAATGAAACCGCGCTTCACATTGCAGCTGACGCAGGACAAATAAAAGTGGTGAGTGAACTACTTAGCACAGAAGGAAAGGAGAC---ACTTGTGAGGATGATGGATAACATTGGAGATACGGCCTTGCACAAGGCTGTTAGAAGTGGACACATTGACATTGTCAGGATGTTGGTGAAATTATTACTAGATCCTGAACACGACTTCCCAGCCAATAAGGCTGAGGAGACACCACTTTATTTGGCTGCAGAGTCTGGTTTTCATGATGCTTTGATTGAAATCTTGAACATTTGCAAGGAACCAACTTATGTTGCAGGTCCATCCAATCGAATACCTCTACATGCAGCCGTAATTCTTGAACACACGG......................................................................................................................................................................................AATGCGTGAGATCACTATGGCAATGGAATAAACCTTTATGCGAAGAACCTGATGAATGGGGTTGGAATTCACTGCACTATGCTGTTAAACAAGGATTGACAGGAATAGTTTCCGATATGTTAGGATGGAAGAAATCTTTAGCCTACCTTCCAGCTGGCAGTGAAAATGACTGGACGACAACGTTTCACGTTGCTGCTAGTGAAGGTGATACATTCATGATGTATAAGTTATTAAACCACTGCCCAGATTGTTGGGAAATGCTTAATAGCAATGGCCAAAATGCTCTTCATGTTGCCATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473251" ref_strand="+" ref_description="SGN-E473251 [cSTB-31-P15]">
      <seq>gagaagtccttaagattaccccggcattattatgctataagaataagaaaaatgaaaccgcgcttcacattgcagctgacgcaggacaaataaaagtggtgagtgaactacttagcacagaaggaaaggagacacttgtgaggatgatggataacattggagatacggccttgcacaaggctgttagaagtggacacattgacattgccaggatgttggtgaaattattactagatactgaacacgacttcccagccaataaagctgaggagacaccactttatttggctgcagagtctggttttcatgatgctttgattgaaatcttgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9600" stop="10534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9900" g_stop="10234" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E473251" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9900" e_stop="10234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGTCCTTAAGATTAGCCCGGCGTTGTTATGTTATAAGAATAAGAAAAATGAAACTGCGCTTCACATTGCAGCTAATGTAGGACAAAGTGAAGTGGTGAGTGAACTACTCAGCATACAAGGACAGGAGACAGTACTTGTGAGGATGAAGGATGACATTGGAGATACGGCCATGCACAAGGCCGTTAGAAGTGGACACATTGACATTGTTAGGATCTTGGTGAAATTATTACTAGATCCTGAACACGATTTCCCAGCAAATAAAGCAGAGGAGACACCACTTTATTTGGCAGCGGAGTCAGGTTTTCATGATGCTTTGATTGAAATCTTGAAC</genome_strand>
        <mrna_strand>GAGAAGTCCTTAAGATTACCCCGGCATTATTATGCTATAAGAATAAGAAAAATGAAACCGCGCTTCACATTGCAGCTGACGCAGGACAAATAAAAGTGGTGAGTGAACTACTTAGCACAGAAGGAAAGGAGAC---ACTTGTGAGGATGATGGATAACATTGGAGATACGGCCTTGCACAAGGCTGTTAGAAGTGGACACATTGACATTGCCAGGATGTTGGTGAAATTATTACTAGATACTGAACACGACTTCCCAGCCAATAAAGCTGAGGAGACACCACTTTATTTGGCTGCAGAGTCTGGTTTTCATGATGCTTTGATTGAAATCTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542918" ref_strand="+" ref_description="SGN-E542918 [TUS-64-H12](-)">
      <seq>gaaggcagctcaaatacaagtagttgtagctactctcctaatgacagtcacgttcgctgctggtttcacattgccaggaggtttatacaacgatgacagtcctaataaagggatggctattctattaaggaaaacagcgtttcgtgcatttgttatttcagatgtcctggcattcgcattctcagctggtgcaatattcatctacttcttcatggcagattgcgatgtagacgaagatgaagaatgtaaaagggactggttcaaagttttaagaagttattattatatagcaggtattttgcaacttttggcaatgggtgctgttgtaattgcatttgtaactggtatgtatgctactttagcaaattcacttgcacttgctattagtgtttgtgtcattggttgtgtctcttttcttatgtacttttggattatcatttgggtataaaaaaacaagaagaaactctcaagggatcttgctttttaggcctattgagccaacaaacatactttgtagtaatgctcaagttgccatcaaatacttggcccaaacatactttgtattaaagtttatggttagactaatattgagtgctaaataagtacttctttgtatattttcaagtgaatttttattgaactttgaaattggtaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11185" stop="12444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11485" g_stop="12143" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E542918" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11485" e_stop="12143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCAGCTCAAATACAAGTAGTTGTAGCTACTCTCCTAATGACAGTCACGTTCGCTGCTGGTTTCACATTGCCAGGAGGTTTATACAACGATGACAGTCCTAATAAAGGGATGGCTATTCTATTAAGGAAAACAGCGTTTCGTGCATTTGTTATTTCAGATGTCCTGGCATTCGCATTCTCAGCTGGTGCAATATTCATCTACTTCTTCATGGCAGATTGCGATGTAGACGAAGATGAAGAATGTAAAAGGGACTGGTTCAAAGTTTTAAGAAGTTATTATTATATAGCAGGTATTTTGCAACTTTTGGCAATGGGTGCTGTTGTAATTGCATTTGTAACTGGTATGTATGCTACTTTAGCAAATTCACTTGCACTTGCTATTAGTGTTTGTGTCATTGGTTGTGTCTCTTTTCTTATGTACTTTTGGATTATCATTTGGGTATAAAAAAACAAGAAGAAACTCTCAAGGGATCTTGCTTTTTAGGCCTATTGAGCCAACAAACATACTTTGTAGTAATGCTCAAGTTGCCATCAAATACTTGGCCCAAACATACTTTGTATTAAAGTTTATGGTTAGACTAATATTGAGTGCTAAATAAGTACTTCTTTGTATATTTTCAAGTGAATTTTTATTGAACTTTGAAATTGGTAATTTT</genome_strand>
        <mrna_strand>GAAGGCAGCTCAAATACAAGTAGTTGTAGCTACTCTCCTAATGACAGTCACGTTCGCTGCTGGTTTCACATTGCCAGGAGGTTTATACAACGATGACAGTCCTAATAAAGGGATGGCTATTCTATTAAGGAAAACAGCGTTTCGTGCATTTGTTATTTCAGATGTCCTGGCATTCGCATTCTCAGCTGGTGCAATATTCATCTACTTCTTCATGGCAGATTGCGATGTAGACGAAGATGAAGAATGTAAAAGGGACTGGTTCAAAGTTTTAAGAAGTTATTATTATATAGCAGGTATTTTGCAACTTTTGGCAATGGGTGCTGTTGTAATTGCATTTGTAACTGGTATGTATGCTACTTTAGCAAATTCACTTGCACTTGCTATTAGTGTTTGTGTCATTGGTTGTGTCTCTTTTCTTATGTACTTTTGGATTATCATTTGGGTATAAAAAAACAAGAAGAAACTCTCAAGGGATCTTGCTTTTTAGGCCTATTGAGCCAACAAACATACTTTGTAGTAATGCTCAAGTTGCCATCAAATACTTGGCCCAAACATACTTTGTATTAAAGTTTATGGTTAGACTAATATTGAGTGCTAAATAAGTACTTCTTTGTATATTTTCAAGTGAATTTTTATTGAACTTTGAAATTGGTAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315717" ref_strand="+" ref_description="SGN-E315717 [cTOA-26-K21]">
      <seq>tacgatgctgcaatggaaggggaactggtatattacaatttttcagttgttgatcatctgacaagggatgaagaaaatggttaccaagtcactccaaagggaaacacaatccttcatgtggcagctctctttggccgacagaattttgtgagagaagtccttaagcgtaccccggcattgttactttataagaataagaaaaatgaaactgcgcttcacattgcagctaatgtaggacaaagtgaagtggtaaatgaactgcttagcatacaaggacaggagacagtacttgtgaggatgacggatgacattggagatacggccttgcacaaggccgttagaagtggacacattgacattgtgaggatcttgatgaatttattactagatcctgaacacgacttcccagcaaataaggcagaggagacaccactttatctggcagcggagtcaggttttcatgatgctttgattgaaatcttgaaagtttgcaaagaaccaacacatgttgcaggtccatccaatcgaacacctctacatgcagctgtgattcaagaacacgcggaatgcgcgatggcactattgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16781" stop="18502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17081" g_stop="17645" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17646" i_stop="18177" i_length="532">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18178" g_stop="18202" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="590" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E315717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17081" e_stop="17645"/>
          <exon e_start="18178" e_stop="18202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGATGCTGCAATGGAAGGGGAACTGGTATATTACAATTTTTCAGTTGTTGATCATCTGACAAGGGATGAAGAAAATGGTTACCAAGTCACTCCAAAGGGAAACACAATCCTTCATGTGGCAGCTCTCTTTGGCCGACAGAATTTTGTGAGAGAAGTCCTTAAGCGTACCCCGGCATTGTTACTTTATAAGAATAAGAAAAATGAAACTGCGCTTCACATTGCAGCTAATGTAGGACAAAGTGAAGTGGTAAATGAACTGCTTAGCATACAAGGACAGGAGACAGTACTTGTGAGGATGACGGATGACATTGGAGATACGGCCTTGCACAAGGCCGTTAGAAGTGGACACATTGACATTGTGAGGATCTTGATGAATTTATTACTAGATCCTGAACACGACTTCCCAGCAAATAAGGCAGAGGAGACACCACTTTATCTGGCAGCGGAGTCAGGTTTTCATGATGCTTTGATTGAAATCTTGAAAGTTTGCAAAGAACCAACACATGTTGCAGGTCCATCCAATCGAACACCTCTACATGCAGCTGTGATTCAAGAACACGCGGGTAAATACGTTGTTTGTCCTTAAGTCCTAGCTATTTTCTGTATGAGTTTTGTGTTAGAAAACTCCAAATTTAGCAATAACCAAAGTAGGCCATTATTGAAATCAATTTACCAAGATAATATGTCTTTTACAAAATTAGTATAAACGTAGTTCTCAGTAACGTTTTAGGTGATATTTTATTTTTAAAAAATCCAGACAAAAATCTAATAGAGTAAACAGACATTCGTAAACGTTATTGTCAGTAACGTTTTATAATTATTACTTACAGCTAAAACGTGACTCACACGAACATTTCTCTGGAACGGTTGAAAATTGAAATTCATGTCTTATCTAATGAAAAGTTAGAAGAACGGTTATACAATTATATATGTTGAAGCTTTGGCTAACAGTTATCTCCGGTTACTTTAAAGATTTATTTACCCCTCCCCGGTTAGCATTAGCTATAGTTTAAACTTCATTTTCAGCTTTAGAAAGTCACATGGCATGCTCTAGTTGAATAAAAAAAAATATTTGACGTGTATATATATAACCAGAATGCGCGATGGCACTATTGCATTG</genome_strand>
        <mrna_strand>TACGATGCTGCAATGGAAGGGGAACTGGTATATTACAATTTTTCAGTTGTTGATCATCTGACAAGGGATGAAGAAAATGGTTACCAAGTCACTCCAAAGGGAAACACAATCCTTCATGTGGCAGCTCTCTTTGGCCGACAGAATTTTGTGAGAGAAGTCCTTAAGCGTACCCCGGCATTGTTACTTTATAAGAATAAGAAAAATGAAACTGCGCTTCACATTGCAGCTAATGTAGGACAAAGTGAAGTGGTAAATGAACTGCTTAGCATACAAGGACAGGAGACAGTACTTGTGAGGATGACGGATGACATTGGAGATACGGCCTTGCACAAGGCCGTTAGAAGTGGACACATTGACATTGTGAGGATCTTGATGAATTTATTACTAGATCCTGAACACGACTTCCCAGCAAATAAGGCAGAGGAGACACCACTTTATCTGGCAGCGGAGTCAGGTTTTCATGATGCTTTGATTGAAATCTTGAAAGTTTGCAAAGAACCAACACATGTTGCAGGTCCATCCAATCGAACACCTCTACATGCAGCTGTGATTCAAGAACACGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCGCGATGGCACTATTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29058" stop="30306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29358" g_stop="30006" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29358" e_stop="30006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29059" stop="30043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29359" g_stop="29743" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29359" e_stop="29743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29717" stop="31124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30017" g_stop="30824" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30017" e_stop="30824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579315" ref_strand="+" ref_description="SGN-E579315 [86442]">
      <seq>gttttgaggtgtgaagtgaggcaaatgtagagcatgagctgctgttttagtttatgtgatgttcttaccaactaaggaatcaaagaatctttgttgggttttagacttgtagagaaacaagaagaagaaaaaaacacctataagggttaaactggtcttttagattttatcaatcgaaggaaaaaaaaggcttgcagagaaagaagaagaaaaagaagacctaccaggatcaaacaacggagtggcgtggtcaaattggtcttttggattttatccatcaaatttaaaagataatgtggtgctggtgctggaatcacctaacaagaacattacaaaattgtgctgctggtttacttcagcttttgtacgcttggtagatcaggctgcaacttgaagtttagttagatagttggacatgaatttgctggtgagaacatgctcgagccaagggaaactgacattccgactttatttttggtcttggttgtgcttcccctgggtttcttatattcttctaggcaaatggaatgaggcagccaaaaagaaagaaagagttggtttgctggctcaacgggctgctgaagaaggcaaataagacacaaaactatgtctgcagtaagtattacccctatccctcttgtgccctttgccaagcagtgcaactcatcagtgtgcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="37806" stop="41747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38106" g_stop="38293" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38294" i_stop="39314" i_length="1021">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39315" g_stop="39416" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="290" r_length="101" r_score="0.882"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39417" i_stop="41063" i_length="1647">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41064" g_stop="41447" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="679" r_length="389" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E579315" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38106" e_stop="38293"/>
          <exon e_start="39315" e_stop="39416"/>
          <exon e_start="41064" e_stop="41447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAGGTGTGAAGTGAGGCAAATGTAGAGCATGAGCTGCTGTTTTAGTTTATGTTATGTTCTTACCAACTAAGGAATCAAAGAATCTTTGTTGGGTTTTAGAGTTGTAGAGAAACAAGAAGAAGAAAAAAACACCTATAAGGGTTAAACTGGTCTTTTAGATTTTATCAATCAAAGG-AAAAAAAGGTATGTTCAAGAGCTACCTAATCAAATCTTTCTTTAGTTTTACTGTTTTCCCATGTTGGGTTTTACTTAAATCCTCATTTTTTCCATCTGGGGTTTGCTTTTTGTGATGAAAATGGGTTAAAGATTGGATTTTTAGTACATGGTGTTGATAAAGATTGTGTTTTTTTTTGCTTTGGGATGTACATTTATTTGTGTTTTGTACTTGTACCATTTTATTTTCAGAATGCCCTCTTTTGGGGTTCTTGAAATAGCTGAGATTCTTCTTTTCTCTTTGAGTTTTCAGTTTGAGTAGTTATTGGTTTGTTAATACTGGAATTAATTTTTGTAATCCCCATTTCTTGATTTAGATTGTTGCTGTTATTTGTTTATGTTATGTATAAAACAGCTAATTAAGCTGCTAGGGAGTTCTTTAGTTGGGTTCTGCTTGATTAATTTGTCTCCATTTTGGGTGCAAATATTAGTAACGTATATGCGAAGCAACTGAAATTTAATGACCTATAGTATAGCGTCTTAAAGATTGTTATAAAAACAGTGATTTTTAGGTGTTTGTGCTCTGAGTGACTGAGCAAAGAAATCTTCTGTAAAAAAAATTGTTCTATGAGTGAATGACATGTTTTGTATATACCCCGAGATTGATATATACTCTTCTCTGAATTGGCTCACAGTATATACATTGTTGTTTAGGTGTATGGTATGTGTCTTTCTAGAGTTTATGGTGCTAGCTTAATCAACTTAAATCAGCATTTGAATGCATCATCTTTACCGTCTGCACTTGAAATTATGTCCATGTTAGAAACCAATAATAGCATGCCGAGTGGAGTGTGTGGACATTATCAAGAATGAGATGTGAGTGTGTGTACATTAATTTTCCCTTGGTCTTAAAGTGTGAGAATGCAAGAATTGGGTTTGGGGTGGAGGGATGAGGGTTGAGGTGTGATGCGAGGCATATGTAGATCATGAGCTGTTGTATTATGTTATGTTCTTACCAACTAAGGATTTAAGTATCTTTGTTAGGTTTTAGACTTGTAGAGAAAAAAGAAGAAAAGGAAGACCTAGAAGGATCAAACAACAGAGTGTCGTGGTCCCATTGGTCTTTTGGATTTTATCCATCAAATTAAAAAAGGTATGCTGTAGAGCTACGCAATCAAATCTTTCTTTAGTTTTACAGTTTTCCTATGTTTTGTTTTTGCCAAATCCTCATTTTTACCATATGTGGTTTACTTTTTGTGAATGAAAATGGGTTAAAGATTTGATTTTGAGTACATTGTTTTGATAAAGGTTTTTATATTGAGAAGTACATTTACTTGTGTCGTACTAGTGGCATTTTATTTTCAGAATGCTTTGGGGTTCACTTATCTGAGTATTTATTTTAGTACTGATATGAACTCGAAAAAGTTGAGATTGTTTCCTCTTTGGGTTATTGGTCGGTAAATCTGGAATCAACATTTGCAGTTCCCTTTCTTGATTCAGATGTTGCTCATATTTCTTCATGTTATGTACAAAATAGCAAATTAAGCTGCTAGGAAGTTGTTTAGTTGGTTTCTGCGTGTCTAATTTGTCTCCATTTTGGGTTGACGTATATTGGAAGCAACTCAGATTTATGATCTATAGTATATCGTCTTAAAGGTTGTAATAATAATAATAATGATTTAGTAGTTTGTCCTCCGAGTGACTGAGCAATGAAACTTCTCTAAAATCATTTGTTTACTGAGTGAAAGACATGTTTGTATGGTTATGTACACAAACCTTACCCCTACATCATAAAGATAGATAAGATGTTTCCGATAAACCTTCGCTCAAGTAAAGCATCTCAAAGAAGTTTGAAAAAGAGAATATGGAAATGAAAGCAATAACAACAACTAAATGTAGCGCTGTGGAAAACACTACATCTTTTCCCCCAAGAAGTTATGCATGATTGGTATCCTCGAATTATTAAAACTGGGGTTAATGCACTTTGCATCATAAGACACATGGAAGCAGTTAGGAAACTGTTGTGATGTATATATTCAGTCTGTTGAGACTATTACATCATTACTCCAAAAGTTGCTACTCGATTTCTTGATGTTGGCTAAAGATCTTTTAATTAGTAAATAGAACTTTCAAATGCAAAAATACAAATGCATTTTGAATTTGATGTAAATTGGGCGAAGGAGAGAGAACAAAAAAAAAACTTAAATCTTTTGATGCTAAATACCAAGTCAGGTGACTCAGGTCAAAGAAACATCAAGGATTTTATGCGATGTAATTTCAAGCCGTGGTAGAAAATAATAGGGCAAGGGTTTTGGGTTATATTAATCTGTATTCACCAAGCACTTCTGCGTGTTTCGTTGTTCAAAGTTATAGCTGATATGGAATGTGTAAAGCTGTCTACAACTAAATGCTTTTGAATAGCATGTGATTGTGATTATTTCATAGCTGCCTGAGACCATGCTCTAACATGACCTTTGTAGTAACTTCTACTGAACTGGTCCACATAAAGAATGTTTTATAGAAAAGAAAAATTGGAAGGTTGCATTTAAACATATTTTTGGAAATGTCCTAGAAGTTCTAAACAGTAGAAAACATGTTTTGGGGGTTGTTTATTCTCCAAGGTTCATTAGATAAAAGCATTTTTCAAGGTTACTGCTTCTAGAATATTCACACTTCTTCCTGTAAGAGAAACGGGCCTAATAGGTTATAATAGTTTCCGGTGCTAAACATTTGAATTGTTAATATATTGTTTTCTCTGTCAATTTTGGTTACAATGATAACCGCCTGCTTGATATTACAGATAATGTGGTGCTGGTGCTGGAATCATCTAACAAGAACATTACAAAATTGTGCTGCTGGTTTACTTTGGCTTTTGTA-GCTTGGTAGATCAGGCTGCAACTTGAAGTTTAGTTAGATAGTTGGACATGAATTTGCTGGTGAGAACATGCTCGAGCCAAGGGAAACCGACATTCCGACTTTATTTTTGGTCTTGGTTGTGCTTCCCCT-GGTTTCTTATATTCTTCTAGGAAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGTTTGCTGGCTCAACGGGCTGCTGAAGAA-GCACATAAGACAC-AAACTATGTCTGCAGTAAGTATTACCCCTATCCCTCTTGTG-CCTTTGCCAAGCAGTGCAACTCATCAGTGTGCAAGA</genome_strand>
        <mrna_strand>GTTTTGAGGTGTGAAGTGAGGCAAATGTAGAGCATGAGCTGCTGTTTTAGTTTATGTGATGTTCTTACCAACTAAGGAATCAAAGAATCTTTGTTGGGTTTTAGACTTGTAGAGAAACAAGAAGAAGAAAAAAACACCTATAAGGGTTAAACTGGTCTTTTAGATTTTATCAATCGAAGGAAAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCAGAGAAAGAAGAAGAAAAAGAAGACCTACCAGGATCAAACAACGGAGTGGCGTGGTCAAATTGGTCTTTTGGATTTTATCCATCAAATT-TAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTGGTGCTGGTGCTGGAATCACCTAACAAGAACATTACAAAATTGTGCTGCTGGTTTACTTCAGCTTTTGTACGCTTGGTAGATCAGGCTGCAACTTGAAGTTTAGTTAGATAGTTGGACATGAATTTGCTGGTGAGAACATGCTCGAGCCAAGGGAAACTGACATTCCGACTTTATTTTTGGTCTTGGTTGTGCTTCCCCTGGGTTTCTTATATTCTTCTAGGCAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGTTTGCTGGCTCAACGGGCTGCTGAAGAAGGCAAATAAGACACAAAACTATGTCTGCAGTAAGTATTACCCCTATCCCTCTTGTGCCCTTTGCCAAGCAGTGCAACTCATCAGTGTGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739577" ref_strand="+" ref_description="SGN-E739577 [LC18AA08]">
      <seq>catttgtagagcatgagctgctgttttagtttatgttatgttcttaccaactaaggaatcaaagaatctttgttgggttttagagttgtagagaaacaagaagaagaaaaaaacacctataagggttaaactggtcttttagattttatcaatcaaaggaaaaaaaggttttagacttgtagagaaaaaagaagaaaaggaagacctacaaggatcaaacaacagagtgtcgtggtcccattggtcttttggattttatccatcaaattaaaaaagataatgtggtgctggtgctggaatcatctaacaagaacattacaaaattgtgctgctggtttactttggcttttgtagcttggtagatcaggctgcaacttgaagtttagttagatagttggacatgaatttgctggtgagaacatgctcgagccaagggaaaccgacattccgactttatttttggtcttggttgtgcttcccctggtttcttatattcttctaggaaaatggaatgaggcagccaaaaagaaagaaagagttggtttgctggctcaacgggctgctgaagaagcacataagacacaaactatgtctgcagtaagtattacccctatccctcttgtgcctttgccaagcagtgcaactcatcagtgtgcaagatgccatagtccagccacaactcgctgctctcaatgcaaatctgttcgatattgctcagggaagtgtcagattctccattggagacaggttcacaagctagagtgtcttcaattgggtaataactgcaatagctcatcctctaagcctgccttgactgatgaactcccgggacgaatgtcatttgatagctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="37827" stop="43466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38127" g_stop="38293" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38294" i_stop="39307" i_length="1014">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39308" g_stop="39416" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="276" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39417" i_stop="41063" i_length="1647">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41064" g_stop="41500" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="713" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41501" i_stop="43026" i_length="1526">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43027" g_stop="43166" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="853" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E739577" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38127" e_stop="38293"/>
          <exon e_start="39308" e_stop="39416"/>
          <exon e_start="41064" e_stop="41500"/>
          <exon e_start="43027" e_stop="43166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGTAGAGCATGAGCTGCTGTTTTAGTTTATGTTATGTTCTTACCAACTAAGGAATCAAAGAATCTTTGTTGGGTTTTAGAGTTGTAGAGAAACAAGAAGAAGAAAAAAACACCTATAAGGGTTAAACTGGTCTTTTAGATTTTATCAATCAAAGGAAAAAAAGGTATGTTCAAGAGCTACCTAATCAAATCTTTCTTTAGTTTTACTGTTTTCCCATGTTGGGTTTTACTTAAATCCTCATTTTTTCCATCTGGGGTTTGCTTTTTGTGATGAAAATGGGTTAAAGATTGGATTTTTAGTACATGGTGTTGATAAAGATTGTGTTTTTTTTTGCTTTGGGATGTACATTTATTTGTGTTTTGTACTTGTACCATTTTATTTTCAGAATGCCCTCTTTTGGGGTTCTTGAAATAGCTGAGATTCTTCTTTTCTCTTTGAGTTTTCAGTTTGAGTAGTTATTGGTTTGTTAATACTGGAATTAATTTTTGTAATCCCCATTTCTTGATTTAGATTGTTGCTGTTATTTGTTTATGTTATGTATAAAACAGCTAATTAAGCTGCTAGGGAGTTCTTTAGTTGGGTTCTGCTTGATTAATTTGTCTCCATTTTGGGTGCAAATATTAGTAACGTATATGCGAAGCAACTGAAATTTAATGACCTATAGTATAGCGTCTTAAAGATTGTTATAAAAACAGTGATTTTTAGGTGTTTGTGCTCTGAGTGACTGAGCAAAGAAATCTTCTGTAAAAAAAATTGTTCTATGAGTGAATGACATGTTTTGTATATACCCCGAGATTGATATATACTCTTCTCTGAATTGGCTCACAGTATATACATTGTTGTTTAGGTGTATGGTATGTGTCTTTCTAGAGTTTATGGTGCTAGCTTAATCAACTTAAATCAGCATTTGAATGCATCATCTTTACCGTCTGCACTTGAAATTATGTCCATGTTAGAAACCAATAATAGCATGCCGAGTGGAGTGTGTGGACATTATCAAGAATGAGATGTGAGTGTGTGTACATTAATTTTCCCTTGGTCTTAAAGTGTGAGAATGCAAGAATTGGGTTTGGGGTGGAGGGATGAGGGTTGAGGTGTGATGCGAGGCATATGTAGATCATGAGCTGTTGTATTATGTTATGTTCTTACCAACTAAGGATTTAAGTATCTTTGTTAGGTTTTAGACTTGTAGAGAAAAAAGAAGAAAAGGAAGACCTAGAAGGATCAAACAACAGAGTGTCGTGGTCCCATTGGTCTTTTGGATTTTATCCATCAAATTAAAAAAGGTATGCTGTAGAGCTACGCAATCAAATCTTTCTTTAGTTTTACAGTTTTCCTATGTTTTGTTTTTGCCAAATCCTCATTTTTACCATATGTGGTTTACTTTTTGTGAATGAAAATGGGTTAAAGATTTGATTTTGAGTACATTGTTTTGATAAAGGTTTTTATATTGAGAAGTACATTTACTTGTGTCGTACTAGTGGCATTTTATTTTCAGAATGCTTTGGGGTTCACTTATCTGAGTATTTATTTTAGTACTGATATGAACTCGAAAAAGTTGAGATTGTTTCCTCTTTGGGTTATTGGTCGGTAAATCTGGAATCAACATTTGCAGTTCCCTTTCTTGATTCAGATGTTGCTCATATTTCTTCATGTTATGTACAAAATAGCAAATTAAGCTGCTAGGAAGTTGTTTAGTTGGTTTCTGCGTGTCTAATTTGTCTCCATTTTGGGTTGACGTATATTGGAAGCAACTCAGATTTATGATCTATAGTATATCGTCTTAAAGGTTGTAATAATAATAATAATGATTTAGTAGTTTGTCCTCCGAGTGACTGAGCAATGAAACTTCTCTAAAATCATTTGTTTACTGAGTGAAAGACATGTTTGTATGGTTATGTACACAAACCTTACCCCTACATCATAAAGATAGATAAGATGTTTCCGATAAACCTTCGCTCAAGTAAAGCATCTCAAAGAAGTTTGAAAAAGAGAATATGGAAATGAAAGCAATAACAACAACTAAATGTAGCGCTGTGGAAAACACTACATCTTTTCCCCCAAGAAGTTATGCATGATTGGTATCCTCGAATTATTAAAACTGGGGTTAATGCACTTTGCATCATAAGACACATGGAAGCAGTTAGGAAACTGTTGTGATGTATATATTCAGTCTGTTGAGACTATTACATCATTACTCCAAAAGTTGCTACTCGATTTCTTGATGTTGGCTAAAGATCTTTTAATTAGTAAATAGAACTTTCAAATGCAAAAATACAAATGCATTTTGAATTTGATGTAAATTGGGCGAAGGAGAGAGAACAAAAAAAAAACTTAAATCTTTTGATGCTAAATACCAAGTCAGGTGACTCAGGTCAAAGAAACATCAAGGATTTTATGCGATGTAATTTCAAGCCGTGGTAGAAAATAATAGGGCAAGGGTTTTGGGTTATATTAATCTGTATTCACCAAGCACTTCTGCGTGTTTCGTTGTTCAAAGTTATAGCTGATATGGAATGTGTAAAGCTGTCTACAACTAAATGCTTTTGAATAGCATGTGATTGTGATTATTTCATAGCTGCCTGAGACCATGCTCTAACATGACCTTTGTAGTAACTTCTACTGAACTGGTCCACATAAAGAATGTTTTATAGAAAAGAAAAATTGGAAGGTTGCATTTAAACATATTTTTGGAAATGTCCTAGAAGTTCTAAACAGTAGAAAACATGTTTTGGGGGTTGTTTATTCTCCAAGGTTCATTAGATAAAAGCATTTTTCAAGGTTACTGCTTCTAGAATATTCACACTTCTTCCTGTAAGAGAAACGGGCCTAATAGGTTATAATAGTTTCCGGTGCTAAACATTTGAATTGTTAATATATTGTTTTCTCTGTCAATTTTGGTTACAATGATAACCGCCTGCTTGATATTACAGATAATGTGGTGCTGGTGCTGGAATCATCTAACAAGAACATTACAAAATTGTGCTGCTGGTTTACTTTGGCTTTTGTAGCTTGGTAGATCAGGCTGCAACTTGAAGTTTAGTTAGATAGTTGGACATGAATTTGCTGGTGAGAACATGCTCGAGCCAAGGGAAACCGACATTCCGACTTTATTTTTGGTCTTGGTTGTGCTTCCCCTGGTTTCTTATATTCTTCTAGGAAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGTTTGCTGGCTCAACGGGCTGCTGAAGAAGCACATAAGACACAAACTATGTCTGCAGTAAGTATTACCCCTATCCCTCTTGTGCCTTTGCCAAGCAGTGCAACTCATCAGTGTGCAAGATGCCATAGTCCAGCCACAACTCGCTGCTCTCAATGCAAATCTGTTCGATATTGGTATGTTAAAAGTTCTTTTAGTGTACTTGCATTCTTAGGACCCATTTTGGCCATAAAAACTATTTTACCTTTTTTCTGGAATAGTTTCACTTTACTTGAATATCAGTATTTGGCCATGAAAATTCCACATCCAACTTGAAGTTCAGAAGTTCCATTTCAAATTTGGAGAACAGCTTATAATCCATTTTACAACGCACTTTTCACTTTTGAAGTTGTAGTTAAGTACATTCATCTAATTGTTTTTTGCAAAAGATATAACTGATCACAAGTCTATCTTCCATTTCAACTCCATAAGCTCCAAATAAAGTGAACAATAATTGGAATCTACGGCCAAACACCTACTAAATTATATATATAGTTAGTTGTGTACAAAAATAGCAAATAGAGGACGGGGAATGGACCAAAAATAGGAACGATTTATTGTCTAAGAGTGTGAAATGGGCTGTCTTCTCTATCTCATTTTTTCTTCTCCTTTAATTTTTAATTTTCTCTTTTTCCATCATTGGTTTGTGTTGTAAATTTATAGTGATATTTTGTGTCATCCCCTTTAAAGGTGCGAAAGGCACTCTGAGGTGTTACCCAAGGTGAAAGCAGTACAATGTTAAATCGCTACAGGATGACTAAACTCTCTCTATAGACGTAGGTGACAACTATATACCCATCCGGTCATTCTTCACATATCCAAAATGGTACTTTAAGAATTTTCATAATGATTAATTTTTCAGCCATACGAAGAGATGAACCTTCACACTATTGAGATGTAACAAAGTTAAAACGTAGATGTAGCATGTTTAACGAGTGTCAGGTTATCAACTTTGGGAAGTGTCTTTTTTTTTTTTTAACTTCCATCTTCTTCTCAATTACTTCATAATATTATTCCACTGTTCACTTCCTCAGTCTTTTTACTTTTGGTTCCAAACGTTCAAGGGGGAGGACTGCAGTCTTACCCCTCTATTTTAAACCCCATGCTACAATTATTTCACACTCGATTCTGAGTTGCAAGAATGTACCTCTCTGTGTGTAATCTATCTCTCTTCAGTTCAGTTCTATCTGAGTTGTGATTTGATCTTTCTTAGGTTACGAGGATAGTTTTTTGAGACACGTCATCACCTTGAATTGAAACTAAACTAGTGAGTGTAAGAAGCCTATAATAGGAACACAATAATCTTGTTTCTAAATTTTCCTTGTTAGGAGCAGTCAGCGGATTAGTTATTAGCACAAGCCTCTTCCCTCCTTAAAGACAAATTCTTCAAAAATGAAAGAGATAGTGAGAAACAAATAGGTAAAAAGGGGAAATGGGCATTTGGTTAATTTTTGGGTGTGAAGAAAAATGGATTAGACATGCATAAACCTGCTACATTTTTTTCCTTACATAATTATAGGTAAAAGCCTATTTCTTTTCCCTTCTCAATAAAAGAAAGAAAGATTGGGACAATAAAATGTCTCCAACACTTCTGCTTTTTCTTTATTGTTCATCAGACTTGTGAGCCAATTGTTATTCTTATCTAATGATGAAGATTGTGCAGCTCAGGGAAGTGTCAGATTCTCCATTGGAGACAGGTTCACAAGCTAGAGTGTCTTCAATTGGGTAATAACTGCAATAGCTCATCCTCTAAGCCTGCCTTGACTGATGAACTCCCGGGACGCATGTCATTTGATAGCTATG</genome_strand>
        <mrna_strand>CATTTGTAGAGCATGAGCTGCTGTTTTAGTTTATGTTATGTTCTTACCAACTAAGGAATCAAAGAATCTTTGTTGGGTTTTAGAGTTGTAGAGAAACAAGAAGAAGAAAAAAACACCTATAAGGGTTAAACTGGTCTTTTAGATTTTATCAATCAAAGGAAAAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGACTTGTAGAGAAAAAAGAAGAAAAGGAAGACCTACAAGGATCAAACAACAGAGTGTCGTGGTCCCATTGGTCTTTTGGATTTTATCCATCAAATTAAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTGGTGCTGGTGCTGGAATCATCTAACAAGAACATTACAAAATTGTGCTGCTGGTTTACTTTGGCTTTTGTAGCTTGGTAGATCAGGCTGCAACTTGAAGTTTAGTTAGATAGTTGGACATGAATTTGCTGGTGAGAACATGCTCGAGCCAAGGGAAACCGACATTCCGACTTTATTTTTGGTCTTGGTTGTGCTTCCCCTGGTTTCTTATATTCTTCTAGGAAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGTTTGCTGGCTCAACGGGCTGCTGAAGAAGCACATAAGACACAAACTATGTCTGCAGTAAGTATTACCCCTATCCCTCTTGTGCCTTTGCCAAGCAGTGCAACTCATCAGTGTGCAAGATGCCATAGTCCAGCCACAACTCGCTGCTCTCAATGCAAATCTGTTCGATATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGAAGTGTCAGATTCTCCATTGGAGACAGGTTCACAAGCTAGAGTGTCTTCAATTGGGTAATAACTGCAATAGCTCATCCTCTAAGCCTGCCTTGACTGATGAACTCCCGGGACGAATGTCATTTGATAGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480403" ref_strand="+" ref_description="SGN-E480403 [cSTD-13-F4]">
      <seq>aaaggcttgtagagaaagaagaagaaaaagaagacctaccaggatcaaacaacagagtggcgtggtcatattggtcttttggattttattcatcaaattaagaagataatgtggtgctggtgctggaatcatctaacaagaacattacaaaattctgctgctggtttacttcggcttttgtagcttggtagatcaggctgcaacttgaagtttagttagatagttggacatgaatttgctggtgagaacatgctcgagccaagggaaaccgacattccgactttatttttggtcttggttgtgcttcccctgggttcttatattcttctaggcaaatggaatgaggcagccaaaaagaaagaaagagttgggttactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39013" stop="41637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39311" g_stop="39416" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39417" i_stop="41063" i_length="1647">
            <donor d_prob="0.980" d_score="0.88"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41064" g_stop="41337" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="379" r_length="274" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E480403" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39311" e_stop="39416"/>
          <exon e_start="41064" e_stop="41337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACTTGTAGAGAAAAAAGAAGAAAAGGAAGACCTAGAAGGATCAAACAACAGAGTGTCGTGGTCCCATTGGTCTTTTGGATTTTATCCATCAAATTAAAAAAGGTATGCTGTAGAGCTACGCAATCAAATCTTTCTTTAGTTTTACAGTTTTCCTATGTTTTGTTTTTGCCAAATCCTCATTTTTACCATATGTGGTTTACTTTTTGTGAATGAAAATGGGTTAAAGATTTGATTTTGAGTACATTGTTTTGATAAAGGTTTTTATATTGAGAAGTACATTTACTTGTGTCGTACTAGTGGCATTTTATTTTCAGAATGCTTTGGGGTTCACTTATCTGAGTATTTATTTTAGTACTGATATGAACTCGAAAAAGTTGAGATTGTTTCCTCTTTGGGTTATTGGTCGGTAAATCTGGAATCAACATTTGCAGTTCCCTTTCTTGATTCAGATGTTGCTCATATTTCTTCATGTTATGTACAAAATAGCAAATTAAGCTGCTAGGAAGTTGTTTAGTTGGTTTCTGCGTGTCTAATTTGTCTCCATTTTGGGTTGACGTATATTGGAAGCAACTCAGATTTATGATCTATAGTATATCGTCTTAAAGGTTGTAATAATAATAATAATGATTTAGTAGTTTGTCCTCCGAGTGACTGAGCAATGAAACTTCTCTAAAATCATTTGTTTACTGAGTGAAAGACATGTTTGTATGGTTATGTACACAAACCTTACCCCTACATCATAAAGATAGATAAGATGTTTCCGATAAACCTTCGCTCAAGTAAAGCATCTCAAAGAAGTTTGAAAAAGAGAATATGGAAATGAAAGCAATAACAACAACTAAATGTAGCGCTGTGGAAAACACTACATCTTTTCCCCCAAGAAGTTATGCATGATTGGTATCCTCGAATTATTAAAACTGGGGTTAATGCACTTTGCATCATAAGACACATGGAAGCAGTTAGGAAACTGTTGTGATGTATATATTCAGTCTGTTGAGACTATTACATCATTACTCCAAAAGTTGCTACTCGATTTCTTGATGTTGGCTAAAGATCTTTTAATTAGTAAATAGAACTTTCAAATGCAAAAATACAAATGCATTTTGAATTTGATGTAAATTGGGCGAAGGAGAGAGAACAAAAAAAAAACTTAAATCTTTTGATGCTAAATACCAAGTCAGGTGACTCAGGTCAAAGAAACATCAAGGATTTTATGCGATGTAATTTCAAGCCGTGGTAGAAAATAATAGGGCAAGGGTTTTGGGTTATATTAATCTGTATTCACCAAGCACTTCTGCGTGTTTCGTTGTTCAAAGTTATAGCTGATATGGAATGTGTAAAGCTGTCTACAACTAAATGCTTTTGAATAGCATGTGATTGTGATTATTTCATAGCTGCCTGAGACCATGCTCTAACATGACCTTTGTAGTAACTTCTACTGAACTGGTCCACATAAAGAATGTTTTATAGAAAAGAAAAATTGGAAGGTTGCATTTAAACATATTTTTGGAAATGTCCTAGAAGTTCTAAACAGTAGAAAACATGTTTTGGGGGTTGTTTATTCTCCAAGGTTCATTAGATAAAAGCATTTTTCAAGGTTACTGCTTCTAGAATATTCACACTTCTTCCTGTAAGAGAAACGGGCCTAATAGGTTATAATAGTTTCCGGTGCTAAACATTTGAATTGTTAATATATTGTTTTCTCTGTCAATTTTGGTTACAATGATAACCGCCTGCTTGATATTACAGATAATGTGGTGCTGGTGCTGGAATCATCTAACAAGAACATTACAAAATTGTGCTGCTGGTTTACTTTGGCTTTTGTAGCTTGGTAGATCAGGCTGCAACTTGAAGTTTAGTTAGATAGTTGGACATGAATTTGCTGGTGAGAACATGCTCGAGCCAAGGGAAACCGACATTCCGACTTTATTTTTGGTCTTGGTTGTGCTTCCCCTGGTTTCTTATATTCTTCTAGGAAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGTTTGCTGG</genome_strand>
        <mrna_strand>AAAGGCTTGTAGAGAAAGAAGAAGAAAAAGAAGACCTACCAGGATCAAACAACAGAGTGGCGTGGTCATATTGGTCTTTTGGATTTTATTCATCAAATT-AAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTGGTGCTGGTGCTGGAATCATCTAACAAGAACATTACAAAATTCTGCTGCTGGTTTACTTCGGCTTTTGTAGCTTGGTAGATCAGGCTGCAACTTGAAGTTTAGTTAGATAGTTGGACATGAATTTGCTGGTGAGAACATGCTCGAGCCAAGGGAAACCGACATTCCGACTTTATTTTTGGTCTTGGTTGTGCTTCCCCTGGGTTCTTATATTCTTCTAGGCAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGGTTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418515" ref_strand="+" ref_description="SGN-E418515 [STM-27-B2]">
      <seq>cttctaggcaaatggaatgaggcagccaaaaagaaagaaagagttggtttgctggctcaacgggctgctgaagaagcaaataagacaccaactatgtctgcagtaagtattacccctatccctcttgtgcctttgccaagcagtgcaactcatcagtgtgcaagatgccacagtccagccacaactcgctgctctcaatgcaaatctgttcgatattgctcagggaagtgtcagattctccattggagacaggttcacaagctagagtgtcttcaattgggtaataactgcagcagctcattctctaagcctatgttgactgatgaactcccgggacgaatgtcatttgatagctatgttgaagcacagtacaacgacaacaacttaaatcagtcgtggcttggcaaaacttctccagatggtgtcactgaaacacccatggtcacaccagttgcccctattactgttagtgtggcaacggatacatcaggatctccaaaagttgggagacgatctgtagacaagagagtacataaaggcaacagagacatattaagaagaggggacggaaccatgtctgagagttctgaacgagcctctcaatctangtcaagagatggtgatgccattctttcggaacatgatagcatcgcagatgggttcaattgtgaacatactgatgtgatgaatacaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40983" stop="43949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41283" g_stop="41500" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41501" i_stop="43026" i_length="1526">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43027" g_stop="43417" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="609" r_length="391" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43418" i_stop="43560" i_length="143">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43561" g_stop="43649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="698" r_length="89" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E418515" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41283" e_stop="41500"/>
          <exon e_start="43027" e_stop="43417"/>
          <exon e_start="43561" e_stop="43649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTAGGAAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGTTTGCTGGCTCAACGGGCTGCTGAAGAAGCACATAAGACACAAACTATGTCTGCAGTAAGTATTACCCCTATCCCTCTTGTGCCTTTGCCAAGCAGTGCAACTCATCAGTGTGCAAGATGCCATAGTCCAGCCACAACTCGCTGCTCTCAATGCAAATCTGTTCGATATTGGTATGTTAAAAGTTCTTTTAGTGTACTTGCATTCTTAGGACCCATTTTGGCCATAAAAACTATTTTACCTTTTTTCTGGAATAGTTTCACTTTACTTGAATATCAGTATTTGGCCATGAAAATTCCACATCCAACTTGAAGTTCAGAAGTTCCATTTCAAATTTGGAGAACAGCTTATAATCCATTTTACAACGCACTTTTCACTTTTGAAGTTGTAGTTAAGTACATTCATCTAATTGTTTTTTGCAAAAGATATAACTGATCACAAGTCTATCTTCCATTTCAACTCCATAAGCTCCAAATAAAGTGAACAATAATTGGAATCTACGGCCAAACACCTACTAAATTATATATATAGTTAGTTGTGTACAAAAATAGCAAATAGAGGACGGGGAATGGACCAAAAATAGGAACGATTTATTGTCTAAGAGTGTGAAATGGGCTGTCTTCTCTATCTCATTTTTTCTTCTCCTTTAATTTTTAATTTTCTCTTTTTCCATCATTGGTTTGTGTTGTAAATTTATAGTGATATTTTGTGTCATCCCCTTTAAAGGTGCGAAAGGCACTCTGAGGTGTTACCCAAGGTGAAAGCAGTACAATGTTAAATCGCTACAGGATGACTAAACTCTCTCTATAGACGTAGGTGACAACTATATACCCATCCGGTCATTCTTCACATATCCAAAATGGTACTTTAAGAATTTTCATAATGATTAATTTTTCAGCCATACGAAGAGATGAACCTTCACACTATTGAGATGTAACAAAGTTAAAACGTAGATGTAGCATGTTTAACGAGTGTCAGGTTATCAACTTTGGGAAGTGTCTTTTTTTTTTTTTAACTTCCATCTTCTTCTCAATTACTTCATAATATTATTCCACTGTTCACTTCCTCAGTCTTTTTACTTTTGGTTCCAAACGTTCAAGGGGGAGGACTGCAGTCTTACCCCTCTATTTTAAACCCCATGCTACAATTATTTCACACTCGATTCTGAGTTGCAAGAATGTACCTCTCTGTGTGTAATCTATCTCTCTTCAGTTCAGTTCTATCTGAGTTGTGATTTGATCTTTCTTAGGTTACGAGGATAGTTTTTTGAGACACGTCATCACCTTGAATTGAAACTAAACTAGTGAGTGTAAGAAGCCTATAATAGGAACACAATAATCTTGTTTCTAAATTTTCCTTGTTAGGAGCAGTCAGCGGATTAGTTATTAGCACAAGCCTCTTCCCTCCTTAAAGACAAATTCTTCAAAAATGAAAGAGATAGTGAGAAACAAATAGGTAAAAAGGGGAAATGGGCATTTGGTTAATTTTTGGGTGTGAAGAAAAATGGATTAGACATGCATAAACCTGCTACATTTTTTTCCTTACATAATTATAGGTAAAAGCCTATTTCTTTTCCCTTCTCAATAAAAGAAAGAAAGATTGGGACAATAAAATGTCTCCAACACTTCTGCTTTTTCTTTATTGTTCATCAGACTTGTGAGCCAATTGTTATTCTTATCTAATGATGAAGATTGTGCAGCTCAGGGAAGTGTCAGATTCTCCATTGGAGACAGGTTCACAAGCTAGAGTGTCTTCAATTGGGTAATAACTGCAATAGCTCATCCTCTAAGCCTGCCTTGACTGATGAACTCCCGGGACGCATGTCATTTGATAGCTATGTTGAAGCGCAGTACAGCGACAACAACCTGAATCAGTTGTGGCTTGGCAAAACTTCTCCAGATGGGGTGACTGAAACACCCATTGTCACCCCAGTTGCCCCTATTACTGTTAGTGTGGCAACGAATACATCAGGATCTCCAAAAGTTGGGAGACGATCTGTAGACAAGAGAGTACATAAAGGCAACAGAGACATATTAAGAAGAGGGGACGGAACCATGTCTGAGAGTTCTGAACGAGCCTCTCAATCTAGGGTTAGTGCTTCTGCATCATGCTGTACTATCTCTTCAAAAGAACTTTCTATGAACCAGATGGTTATTTCTTTTCCAATAGGAAGTGTGGAAGTTTTTTTGTTTCTTAATTTTCCATTTTGCCTAAGCTTAGCCTTCTTTTGCAGTCAAGAGATGGTGATTCCATGCTTTCGGAACATGATAGCATCGCGGATGGGTTCATTAGTGAACATACTGATTTGATGAATACAATGGG</genome_strand>
        <mrna_strand>CTTCTAGGCAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGTTTGCTGGCTCAACGGGCTGCTGAAGAAGCAAATAAGACACCAACTATGTCTGCAGTAAGTATTACCCCTATCCCTCTTGTGCCTTTGCCAAGCAGTGCAACTCATCAGTGTGCAAGATGCCACAGTCCAGCCACAACTCGCTGCTCTCAATGCAAATCTGTTCGATATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGAAGTGTCAGATTCTCCATTGGAGACAGGTTCACAAGCTAGAGTGTCTTCAATTGGGTAATAACTGCAGCAGCTCATTCTCTAAGCCTATGTTGACTGATGAACTCCCGGGACGAATGTCATTTGATAGCTATGTTGAAGCACAGTACAACGACAACAACTTAAATCAGTCGTGGCTTGGCAAAACTTCTCCAGATGGTGTCACTGAAACACCCATGGTCACACCAGTTGCCCCTATTACTGTTAGTGTGGCAACGGATACATCAGGATCTCCAAAAGTTGGGAGACGATCTGTAGACAAGAGAGTACATAAAGGCAACAGAGACATATTAAGAAGAGGGGACGGAACCATGTCTGAGAGTTCTGAACGAGCCTCTCAATCTANG...............................................................................................................................................TCAAGAGATGGTGATGCCATTCTTTCGGAACATGATAGCATCGCAGATGGGTTCAATTGTGAACATACTGATGTGATGAATACAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442176" ref_strand="+" ref_description="SGN-E442176 [cSTA-32-A4]">
      <seq>cttctaggcaaatggaatgaggcagccaaaaagaaagaaagagttggtttgctggctcaacgggctgctgaagaagcaaataagacaccaactatgtctgcagtaagtattacccctatccctcttgtgcctttgccaagcagtgcaactcatcagtgtgcaagatgccacagtccagccacaactcgctgctctcaatgcaaatctgttcgatattgctcagggaagtgtcagattctccattggagacaggttcacaagctagagtgtcttcaattgggtaataactgcagcagctcattctctaagcctatgttgactgatgaactcccgggacgaatgtcatttgatagctatgttgaagcacagtacaacgacaacaacttaaatcagtcgtggcttggcaaaacttctccagatggtgtcactgaaacacccatggtcacaccagttgcccctattactgttagtgtggcaacggataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40983" stop="43594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41283" g_stop="41500" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41501" i_stop="43026" i_length="1526">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43027" g_stop="43294" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="486" r_length="268" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E442176" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41283" e_stop="41500"/>
          <exon e_start="43027" e_stop="43294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTAGGAAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGTTTGCTGGCTCAACGGGCTGCTGAAGAAGCACATAAGACACAAACTATGTCTGCAGTAAGTATTACCCCTATCCCTCTTGTGCCTTTGCCAAGCAGTGCAACTCATCAGTGTGCAAGATGCCATAGTCCAGCCACAACTCGCTGCTCTCAATGCAAATCTGTTCGATATTGGTATGTTAAAAGTTCTTTTAGTGTACTTGCATTCTTAGGACCCATTTTGGCCATAAAAACTATTTTACCTTTTTTCTGGAATAGTTTCACTTTACTTGAATATCAGTATTTGGCCATGAAAATTCCACATCCAACTTGAAGTTCAGAAGTTCCATTTCAAATTTGGAGAACAGCTTATAATCCATTTTACAACGCACTTTTCACTTTTGAAGTTGTAGTTAAGTACATTCATCTAATTGTTTTTTGCAAAAGATATAACTGATCACAAGTCTATCTTCCATTTCAACTCCATAAGCTCCAAATAAAGTGAACAATAATTGGAATCTACGGCCAAACACCTACTAAATTATATATATAGTTAGTTGTGTACAAAAATAGCAAATAGAGGACGGGGAATGGACCAAAAATAGGAACGATTTATTGTCTAAGAGTGTGAAATGGGCTGTCTTCTCTATCTCATTTTTTCTTCTCCTTTAATTTTTAATTTTCTCTTTTTCCATCATTGGTTTGTGTTGTAAATTTATAGTGATATTTTGTGTCATCCCCTTTAAAGGTGCGAAAGGCACTCTGAGGTGTTACCCAAGGTGAAAGCAGTACAATGTTAAATCGCTACAGGATGACTAAACTCTCTCTATAGACGTAGGTGACAACTATATACCCATCCGGTCATTCTTCACATATCCAAAATGGTACTTTAAGAATTTTCATAATGATTAATTTTTCAGCCATACGAAGAGATGAACCTTCACACTATTGAGATGTAACAAAGTTAAAACGTAGATGTAGCATGTTTAACGAGTGTCAGGTTATCAACTTTGGGAAGTGTCTTTTTTTTTTTTTAACTTCCATCTTCTTCTCAATTACTTCATAATATTATTCCACTGTTCACTTCCTCAGTCTTTTTACTTTTGGTTCCAAACGTTCAAGGGGGAGGACTGCAGTCTTACCCCTCTATTTTAAACCCCATGCTACAATTATTTCACACTCGATTCTGAGTTGCAAGAATGTACCTCTCTGTGTGTAATCTATCTCTCTTCAGTTCAGTTCTATCTGAGTTGTGATTTGATCTTTCTTAGGTTACGAGGATAGTTTTTTGAGACACGTCATCACCTTGAATTGAAACTAAACTAGTGAGTGTAAGAAGCCTATAATAGGAACACAATAATCTTGTTTCTAAATTTTCCTTGTTAGGAGCAGTCAGCGGATTAGTTATTAGCACAAGCCTCTTCCCTCCTTAAAGACAAATTCTTCAAAAATGAAAGAGATAGTGAGAAACAAATAGGTAAAAAGGGGAAATGGGCATTTGGTTAATTTTTGGGTGTGAAGAAAAATGGATTAGACATGCATAAACCTGCTACATTTTTTTCCTTACATAATTATAGGTAAAAGCCTATTTCTTTTCCCTTCTCAATAAAAGAAAGAAAGATTGGGACAATAAAATGTCTCCAACACTTCTGCTTTTTCTTTATTGTTCATCAGACTTGTGAGCCAATTGTTATTCTTATCTAATGATGAAGATTGTGCAGCTCAGGGAAGTGTCAGATTCTCCATTGGAGACAGGTTCACAAGCTAGAGTGTCTTCAATTGGGTAATAACTGCAATAGCTCATCCTCTAAGCCTGCCTTGACTGATGAACTCCCGGGACGCATGTCATTTGATAGCTATGTTGAAGCGCAGTACAGCGACAACAACCTGAATCAGTTGTGGCTTGGCAAAACTTCTCCAGATGGGGTGACTGAAACACCCATTGTCACCCCAGTTGCCCCTATTACTGTTAGTGTGGCAACGAATACA</genome_strand>
        <mrna_strand>CTTCTAGGCAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGTTTGCTGGCTCAACGGGCTGCTGAAGAAGCAAATAAGACACCAACTATGTCTGCAGTAAGTATTACCCCTATCCCTCTTGTGCCTTTGCCAAGCAGTGCAACTCATCAGTGTGCAAGATGCCACAGTCCAGCCACAACTCGCTGCTCTCAATGCAAATCTGTTCGATATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGAAGTGTCAGATTCTCCATTGGAGACAGGTTCACAAGCTAGAGTGTCTTCAATTGGGTAATAACTGCAGCAGCTCATTCTCTAAGCCTATGTTGACTGATGAACTCCCGGGACGAATGTCATTTGATAGCTATGTTGAAGCACAGTACAACGACAACAACTTAAATCAGTCGTGGCTTGGCAAAACTTCTCCAGATGGTGTCACTGAAACACCCATGGTCACACCAGTTGCCCCTATTACTGTTAGTGTGGCAACGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481822" ref_strand="+" ref_description="SGN-E481822 [cSTD-19-P5]">
      <seq>caacagagacatattaagaagaggggacggaaccatgtctgagagttctggacgagcctctcaatctaggtcaagagatggtgattccatgctttcggaacatgatagcatcgcggatgggttcaatagtgaacatgctgatttgatgaatacaatgggagaatgccatatgttacaaaagcaggaagaacacatctcaagaaatcatcgtcatgtttcaagttcattgaatctagaaggccatgaaacaagtgcgtgcaagaatcagaaggagctgattgatgaaaaaagccttacaccagaaggcgtcgttaccggcactccagcaattccattgaactgttcttctggaaagacttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43048" stop="44152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43348" g_stop="43417" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43418" i_stop="43560" i_length="143">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43561" g_stop="43852" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="362" r_length="292" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E481822" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43348" e_stop="43417"/>
          <exon e_start="43561" e_stop="43852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGAGACATATTAAGAAGAGGGGACGGAACCATGTCTGAGAGTTCTGAACGAGCCTCTCAATCTAGGGTTAGTGCTTCTGCATCATGCTGTACTATCTCTTCAAAAGAACTTTCTATGAACCAGATGGTTATTTCTTTTCCAATAGGAAGTGTGGAAGTTTTTTTGTTTCTTAATTTTCCATTTTGCCTAAGCTTAGCCTTCTTTTGCAGTCAAGAGATGGTGATTCCATGCTTTCGGAACATGATAGCATCGCGGATGGGTTCATTAGTGAACATACTGATTTGATGAATACAATGGGAGAACGCCATATGTTACAAAAGCAGAAAGAACACATCTCAAGAAATCATCGTCATGTTTCAAGTTCATCGAATCTAGAAGGCCATGAAACAAATGCATGCAAGAATCAGAAGGAGCTGATTGATGAAAAAAGCCTTACACGAGAAGGCGTCGTTACCGGCACTCCGGCAATTCCATTAAACTGTTCTTCTGGAAAGACCTCTA</genome_strand>
        <mrna_strand>CAACAGAGACATATTAAGAAGAGGGGACGGAACCATGTCTGAGAGTTCTGGACGAGCCTCTCAATCTAGG...............................................................................................................................................TCAAGAGATGGTGATTCCATGCTTTCGGAACATGATAGCATCGCGGATGGGTTCAATAGTGAACATGCTGATTTGATGAATACAATGGGAGAATGCCATATGTTACAAAAGCAGGAAGAACACATCTCAAGAAATCATCGTCATGTTTCAAGTTCATTGAATCTAGAAGGCCATGAAACAAGTGCGTGCAAGAATCAGAAGGAGCTGATTGATGAAAAAAGCCTTACACCAGAAGGCGTCGTTACCGGCACTCCAGCAATTCCATTGAACTGTTCTTCTGGAAAGACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203650" ref_strand="+" ref_description="SGN-E203650 [cLEC-15-G15]">
      <seq>gtcaaaaaatgctagaagaaaggatgcagtccctccacaagcaggcagtggtgttgcaaacttgggaattatgagaatgtttggtctggctaaatcatcaaaagttgtcggacatcaatcattagaatccagggctgacaaacaaaagaaactaaagatgctgtttccttatgaagagtttgtgaagttatttgaatacgaagacttcactttgttgcctagaggtctcataaattgcgggaatagttgttatgccaatgctgtcttgcagtgtctgatgtgcacaaagcctttaacaatctacctacttcacagatcacattctagaacttactgcaggaaagattggtgccttgtgtgtgaacttgagcaacatgcgatgatgttaagagaaagtggaggtcctctgtcaccaaacaagattcttttgcatatgcggagcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="43755" stop="45175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43977" g_stop="43981" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43982" i_stop="44057" i_length="76">
            <donor d_prob="0.796" d_score="0.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44058" g_stop="44209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="157" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44210" i_stop="44331" i_length="122">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.651" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44332" g_stop="44420" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="246" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44421" i_stop="44583" i_length="163">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44584" g_stop="44669" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="332" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44670" i_stop="44758" i_length="89">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.745" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44759" g_stop="44875" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="449" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E203650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43977" e_stop="43981"/>
          <exon e_start="44058" e_stop="44209"/>
          <exon e_start="44332" e_stop="44420"/>
          <exon e_start="44584" e_stop="44669"/>
          <exon e_start="44759" e_stop="44875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGTATGTTTCCTTGTTGACTGTTATATGCTAATATCTGCATGTTGCGCTTTCATTTTACTGAGTCTTCACAATGCAGAAAATGCTAGAAGAAAGGATGCAGTCCCTCCACAAGCAGGCAGTGGTGTTGCAAACTTGGGAATTATGAGAATGTTTGGTCTGGCTAAATCATCAAAAGTTGTCGGACATCAATCATTAGAATCCAGGGCTGACAAACAAAAGAAACTAAAGGTTAGTATTTATGAAGAATCACTTAGGTTTGGAGAATCTTTTAACATAATTTATACAATAACATGATGTCATTGGCTTGTCTGTGCTTTGGCATGAGTCATTAATAATCGTCCAATGAACAGATGCTGTTTCCTTATGAAGAGTTTGTGAAGTTATTTGAATACGAAGACTTCACTTTGTTGCCTAGAGGTCTCATAAATTGCGGGAATAGGTAATATTGCAGATGTCTTAACTCTTATCTCATTTACATTTGCTTTCGAGATATATTTGTTTATTAAAAATAATTGAAAACATCCTAAACAGAAGTTAGCCTTTTAGGTAATTTTGCCTGAACATAGCAAGTTAGTTACAGCGATTGTTCGTTCATTTTGCAGTTGTTATGCCAATGCTGTCTTGCAGTGTCTGATGTGCACAAAGCCTTTAACAATCTACCTACTTCACAGATCACATTCTAGAACTTGTAATTTCACCCGATTTAGCCCTTTAACTACTTCGATTCTGTTTCATTTTGAAACGAATTGCAAAATTCACCTATTACATGGACATCAGACTGCAGGAAAGATTGGTGCCTTGTGTGTGAACTTGAGCAACATGCGATGATGTTAAGAGAAAGTGGAGGTCCTCTGTCACCAAACAAGATTCTTTTGCATATGCGGAGCATTAATG</genome_strand>
        <mrna_strand>GTCAA............................................................................AAAATGCTAGAAGAAAGGATGCAGTCCCTCCACAAGCAGGCAGTGGTGTTGCAAACTTGGGAATTATGAGAATGTTTGGTCTGGCTAAATCATCAAAAGTTGTCGGACATCAATCATTAGAATCCAGGGCTGACAAACAAAAGAAACTAAAG..........................................................................................................................ATGCTGTTTCCTTATGAAGAGTTTGTGAAGTTATTTGAATACGAAGACTTCACTTTGTTGCCTAGAGGTCTCATAAATTGCGGGAATAG...................................................................................................................................................................TTGTTATGCCAATGCTGTCTTGCAGTGTCTGATGTGCACAAAGCCTTTAACAATCTACCTACTTCACAGATCACATTCTAGAACTT.........................................................................................ACTGCAGGAAAGATTGGTGCCTTGTGTGTGAACTTGAGCAACATGCGATGATGTTAAGAGAAAGTGGAGGTCCTCTGTCACCAAACAAGATTCTTTTGCATATGCGGAGCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713930" ref_strand="+" ref_description="SGN-E713930 [FB10AC03]">
      <seq>ggataccttaaatgcatcattttctgggcattacatatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagagactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtctagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcatttcctagttcaatggaacaactggtccttttttgttattttgcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="45850" stop="48680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46150" g_stop="46183" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46184" i_stop="47702" i_length="1519">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47703" g_stop="48380" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="712" r_length="678" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E713930" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46150" e_stop="46183"/>
          <exon e_start="47703" e_stop="48380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATACCTTAAATGCATCATTTTCTGGGCATTACATATCCTACGTGAAGGATCTACACCTACGAGGCAATTGGTTCAGGATTGACGATACTGAGGTAATTTGATGCATGGAGCTTCTTAAATGTTTGATTTTATCATGCTTATGCCCAGTTAGAAGGATACTAGTGTAGATAATGCTAATGGGTCATATGAAGTTGGACTGTTGTGGTTCCAAAGCTAGTAGGAGGTTGCTACCCGTGGAATACATCAGGAATAAATATTTGAATTCTTGTATGCTTAACATTAGTTAGAATTGGGATGCGGTTAATGACTTCCGTTACTTGGCAGTGTTTCTTTTTCCTTCATATGAGTCATGTCCTTGAGACCTAATGGTTACGATATACTAACTTGTGCTAGGAAAATAGAAATCCTAAGAGTTAGTTGCATGTTTCTTGACCAGTCCTCCCATGAGAACTATAGCGAAGATAGCAAGAGACGTGCTACTTCCAGACGTATCAGATCAACTTTTTTTACTGATAATAAAGGTAGTAGAGCAAGGGACAATGTATGCATGCTTATTGAGGAATAGTAGATGTCTGTTTTGTTTATTCTTGAATCACTTGTACTGTAATGAGGAAACCCATGACATCCATTTATTATGTATTTTGGTTAACCTGTTTATAAGGCACAGTATTGTAGTTGCCTTGCTACAAAACATGGTTTCTTGACTCTCTGCTTAACCTACCGGGCATATTTAAATGTTTATTGAAGTAAGCCATACAATAATGGTAAAGCTGGTGTGACCTAATGGTCAATAAAGTGGGAGGAGAACCATGAGGTCTCAAGTTCGATTTTGGTTCCCATCTACCTAAGTCTTGTGGATTGAGTTACCCGATACCTGCGCTGGTTGGAGATAGCAGGTATCCAGTGAAATAGTCTTAGATGCACAAGCTGCTCTGGTACACCTATGCCATAAAAAGAAAAGGAAAAGTGAAATTAGTACATATACAGCAGTTTGGTGCTTGACTGCACTTTTGGGAACCATACTTGTAAGGATCAAAGGTAAGATTCACTTTGCTTGCTACTTTCTTTTGAAATCACTTTCTTGTTGAGAAATTTCACACCTTTGGTGACAATGCTAGTAGGCAACTGTCAAAGGTGAATTCTATGACTTATTGTGCTCGTCATACTGTTCTCATAAGTTGCATGTTCTGATACTAGGTACACCCTGTATCTATGAGCCAGGTGATGTCGGAAGGAGCATATATCTTATTTTATAAGAGGTAAAGCACTAGAGAGCTTTGACCTTTACCAAAGGCATGTTAGAAATTATAATCTAGATATCAATTTGGCCAATTCATATTTGTTATCCCTTCAGAAGCTTGTTTCATGACTTGTTAGAAATCTTATAAGATCCCTATATTGAATCAGTATGAAATTTTGTAGATCATCTCCACGGCCAGCAAGGAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTG</genome_strand>
        <mrna_strand>GGATACCTTAAATGCATCATTTTCTGGGCATTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGAGACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTCTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTCCTAGTTCAATGGAACAACTGGTCCTTTTTTGTTATTTTGCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418516" ref_strand="-" ref_description="SGN-E418516 [STM-27-B2]">
      <seq>cggaaggagcatatatcttatttataagagatcatctccacgaccagcaagaaagattagccgaagacaagttcctggaattgtcaagcactgcccaccaaaatcaacaaagacttctaggccagagcagacaaaagtggagcatctttatgttggtgtggatccttatacgaatcataggccggaaatgaacagtgacataattgattgcacctctggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctataccgagtcaatgactgcggagttttctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagagactcttttagtactgttgactatggggatgcaagcgctgctgatccattctcttccatcatcaacagcttatgtgcatcagattattcatctaacagaacagtcgcgtgtagtatgttttcaagtagtaaaccacatacaagattcttttcagaaagtaagggttctgttttggattcaactgctggggctagcattccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtacccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtctagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcatttgccagttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47080" stop="48644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47380" g_stop="47410" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47411" i_stop="47573" i_length="163">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47574" g_stop="48353" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="810" r_length="780" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E418516" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418516" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47380" e_stop="47410"/>
          <exon e_start="47574" e_stop="48353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGGAGCATATATCTTATTTTATAAGAGGTAAAGCACTAGAGAGCTTTGACCTTTACCAAAGGCATGTTAGAAATTATAATCTAGATATCAATTTGGCCAATTCATATTTGTTATCCCTTCAGAAGCTTGTTTCATGACTTGTTAGAAATCTTATAAGATCCCTATATTGAATCAGTATGAAATTTTGTAGATCATCTCCACGGCCAGCAAGGAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAAC</genome_strand>
        <mrna_strand>CGGAAGGAGCATATATCTTA-TTTATAAGAG...................................................................................................................................................................ATCATCTCCACGACCAGCAAGAAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCAACAAAGACTTCTAGGCCAGAGCAGACAAAAGTGGAGCATCTTTATGTTGGTGTGGATCCTTATACGAATCATAGGCCGGAAATGAACAGTGACATAATTGATTGCACCTCTGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACCGAGTCAATGACTGCGGAGTTTTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGAGACTCTTTTAGTACTGTTGACTATGGGGATGCAAGCGCTGCTGATCCATTCTCTTCCATCATCAACAGCTTATGTGCATCAGATTATTCATCTAACAGAACAGTCGCGTGTAGTATGTTTTCAAGTAGTAAACCACATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGGCTAGCATTCCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTACCCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTCTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTGCCAGTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377016" ref_strand="+" ref_description="SGN-E377016 [TUS-20-I3]">
      <seq>gaagattagccgaagacaagttcctggaattgtcaagcactgcccaccaaaatcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatagaaacaaacttactattcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47295" stop="48523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47595" g_stop="48223" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E377016" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47595" e_stop="48223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATA</genome_strand>
        <mrna_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATAGAAACAAACTTACTATTCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233212" ref_strand="+" ref_description="SGN-E233212 [cLED-6-N18]">
      <seq>gaagattagccgaagacaagttcctggaattgtcaagcactgcccaccaaaatcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47295" stop="48508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47595" g_stop="48208" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E233212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47595" e_stop="48208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAA</genome_strand>
        <mrna_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241415" ref_strand="+" ref_description="SGN-E241415 [cLED-28-F14]">
      <seq>gaagattagccgaagacaagttcctggaattgtcaagcactgcccaccaaaagcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47295" stop="48363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47595" g_stop="48063" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E241415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47595" e_stop="48063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTT</genome_strand>
        <mrna_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAAGCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325054" ref_strand="+" ref_description="SGN-E325054 [cTOC-13-L13]">
      <seq>accaaaatcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatgcttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47340" stop="48227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47640" g_stop="47927" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E325054" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47640" e_stop="47927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTAC</genome_strand>
        <mrna_strand>ACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATGCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243871" ref_strand="+" ref_description="SGN-E243871 [cLED-35-E12]">
      <seq>caatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttatggattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47522" stop="48395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47822" g_stop="48095" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E243871" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47822" e_stop="48095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAAC</genome_strand>
        <mrna_strand>CAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTATGGATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357383" ref_strand="+" ref_description="SGN-E357383 [cTOS-23-L9]">
      <seq>ctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtgtagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcattttctagttcaatggaacaactggtcattttttgttattttgcagttgtaaatatgcttgctgtagctaattatcttgattctttacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47540" stop="48721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47840" g_stop="48424" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E357383" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47840" e_stop="48424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAATCT</genome_strand>
        <mrna_strand>CTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216403" ref_strand="+" ref_description="SGN-E216403 [cLEL-13-O11](-)">
      <seq>actgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtgtagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcattttctagttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47626" stop="64906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47926" g_stop="48361" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E216403" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47926" e_stop="48361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATT</genome_strand>
        <mrna_strand>ACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216050" ref_strand="+" ref_description="SGN-E216050 [cLEL-13-O11](-)">
      <seq>attcttttcagaaagtaagggttctgttttggattcaactgctgggactagcattccaagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtgtagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcattttctagttcaaaaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47757" stop="48644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48057" g_stop="48343" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="305"/>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E216050" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48057" e_stop="48343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCA</genome_strand>
        <mrna_strand>ATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATTCCAAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624030" ref_strand="-" ref_description="SGN-E624030 [89176]">
      <seq>ttttttttttttttttttttttttttttttttgaactggcaaatgattgatgtgcttccattcaataaaatattgattagcaaaacagaagcacagcttgtacctagctaattcgacatataatgatttggaatttcaagaaactagacattatatggatagtaagtttgttcatatctaggctcactaccatattctacatgtacatgggtactactatcactatgaaaaccttcagaataaggaacagtaacctgtctcggaatgctagccccagcagttgaatccaaaacagaacccttactttctgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="64906" stop="47760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49138" g_stop="49117" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.682"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49116" i_stop="48353" i_length="764">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48352" g_stop="48060" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="315" r_length="293" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E624030" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624030" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49138" e_stop="49117"/>
          <exon e_start="48352" e_stop="48060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAACACCTCTGTGTCGTCAAATATCTTTCAACATAATTCAATTACAGCAATTTACCAAGTTTAGGGGAGCCTCTGAGACACGGTAAAGTTATCTTCATGTGACTTATAGGCACGAGCTTCAGCCACTGATACTTGCAGTCAGGGTAAGCTGCCTACATAAACACTACCTCAGAAATGCAACCCTCAATCTTTGCATAAACACGAGATGCTTCATAACTACGCTGATTATTTAACATACAGATTGTAAAGAATCAAGATAATTAGCTACAGCAAGCATATTTACAACTGCAAAATAACAAAAAATGACCAGTTGTTCCATTGAACTAGAAAATGATTGATGTGCTTCCATTCAATAAAATATTGATTAGCAAAACAGAAGCACAGCTTGTACCTAGCTAATTCGACATATAATGATTTGGAATTTCAAGAAACTACACATTATATGGATAGTAAGTTTGTTCATATCTAGGCTCACTACCATATTCTACATGTACATGGTTACTACTATCACTATGAAAACCTTCAGAATAAGGAACAGTAACCTGTCTCGGTATGCTAGTCCCAGCAGTTGAATCCAAAACAGAACCCTTACTTTCTGAAAAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTGAACTGGCAAATGATTGATGTGCTTCCATTCAATAAAATATTGATTAGCAAAACAGAAGCACAGCTTGTACCTAGCTAATTCGACATATAATGATTTGGAATTTCAAGAAACTAGACATTATATGGATAGTAAGTTTGTTCATATCTAGGCTCACTACCATATTCTACATGTACATGGGTACTACTATCACTATGAAAACCTTCAGAATAAGGAACAGTAACCTGTCTCGGAATGCTAGCCCCAGCAGTTGAATCCAAAACAGAACCCTTACTTTCTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720261" ref_strand="+" ref_description="SGN-E720261 [FC10BB07]">
      <seq>gaaaatttcattgagacaaattaaaacagcaaaaagtaataaaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccaaaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatattgcaaataagatagattgtgtaatacaatctgattctgagnaaaaaaaanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49919" stop="23376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49620" g_stop="49320" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="48675" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="858" r_length="557" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48674" i_stop="48295" i_length="380">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.128" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48294" g_stop="48285" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="868" r_length="10" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48284" i_stop="48137" i_length="148">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.614" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48136" g_stop="48122" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="883" r_length="15" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E720261" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49620" e_stop="49320"/>
          <exon e_start="49231" e_stop="48675"/>
          <exon e_start="48294" e_stop="48285"/>
          <exon e_start="48136" e_stop="48122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTTCATTGAGACAAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAACACCTCTGTGTCGTCAAATATCTTTCAACATAATTCAATTACAGCAATTTACCAAGTTTAGGGGAGCCTCTGAGACACGGTAAAGTTATCTTCATGTGACTTATAGGCACGAGCTTCAGCCACTGATACTTGCAGTCAGGGTAAGCTGCCTACATAAACACTACCTCAGAAATGCAACCCTCAATCTTTGCATAAACACGAGATGCTTCATAACTACGCTGATTATTTAACATACAGATTGTAAAGAATCAAGATAATTAGCTACAGCAAGCATATTTACAACTGCAAAATAACAAAAAATGACCAGTTGTTCCATTGAACTAGAAAATGATTGATGTGCTTCCATTCAATAAAATATTGATTAGCAAAACAGAAGCACAGCTTGTACCTAGCTAATTCGACATATAATGATTTGGAATTTCAAGAAACTACACATTATATGGATAGTAAGTTTGTTCATATCTAGGCTCACTACCATATTCTACATGTACATGGTTACTACTATCACTATGAAAACCTTCAGAATAAGGAACAGTAA</genome_strand>
        <mrna_strand>GAAAATTTCATTGAGACAAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAAAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGN............................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAANA....................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216850" ref_strand="+" ref_description="SGN-E216850 [cLEL-1-L7](-)">
      <seq>atctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgcccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgatacattctatattgcaaataagatagattgtgtaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49358" stop="23377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49058" g_stop="48689" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48688" i_stop="48295" i_length="394">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.128" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48294" g_stop="48285" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="380" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48284" i_stop="48137" i_length="148">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.614" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48136" g_stop="48132" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="385" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E216850" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49058" e_stop="48689"/>
          <exon e_start="48294" e_stop="48285"/>
          <exon e_start="48136" e_stop="48132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAACACCTCTGTGTCGTCAAATATCTTTCAACATAATTCAATTACAGCAATTTACCAAGTTTAGGGGAGCCTCTGAGACACGGTAAAGTTATCTTCATGTGACTTATAGGCACGAGCTTCAGCCACTGATACTTGCAGTCAGGGTAAGCTGCCTACATAAACACTACCTCAGAAATGCAACCCTCAATCTTTGCATAAACACGAGATGCTTCATAACTACGCTGATTATTTAACATACAGATTGTAAAGAATCAAGATAATTAGCTACAGCAAGCATATTTACAACTGCAAAATAACAAAAAATGACCAGTTGTTCCATTGAACTAGAAAATGATTGATGTGCTTCCATTCAATAAAATATTGATTAGCAAAACAGAAGCACAGCTTGTACCTAGCTAATTCGACATATAATGATTTGGAATTTCAAGAAACTACACATTATATGGATAGTAAGTTTGTTCATATCTAGGCTCACTACCATATTCTACATGTACATGGTTACTACTATCACTATGAAAACCTTCAGAATAA</genome_strand>
        <mrna_strand>ATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGCCCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGATACATTCTATATTGCAAATAAGATAGATTGTGTAATAAA..........................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA....................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734945" ref_strand="+" ref_description="SGN-E734945 [LB14AA11]">
      <seq>atataaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatattgcaaataagatagattgtgtaatacaatctgattctgagagtttggtggntaaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49882" stop="48358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49582" g_stop="49320" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="48650" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="845" r_length="582" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E734945" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49582" e_stop="49320"/>
          <exon e_start="49231" e_stop="48650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAACACCTCTGTG</genome_strand>
        <mrna_strand>ATATAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGNTAAAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733775" ref_strand="+" ref_description="SGN-E733775 [LB10DF08]">
      <seq>cgatattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatattgcaaataagatagattgtgtaatacaatctgattctgagagtttggtggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49747" stop="42028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49447" g_stop="49320" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="48651" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="709" r_length="581" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E733775" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49447" e_stop="49320"/>
          <exon e_start="49231" e_stop="48651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAACACCTCTGT</genome_strand>
        <mrna_strand>CGATATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613413" ref_strand="+" ref_description="SGN-E613413 [63187]">
      <seq>tatccaaaaatggggtaaaacttatgtcgcggtcaggcaattcagtggatttataactgatgatgaccttccaagagaagctgctgccctgagtgccagtattgctggcactaaatgggcagcagccatcgacaaaagccatgctgcagacaatactacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggacaaagcacttgccatttgagaggctcttgttactacttatcaaaggatacttgataagtccctagtaattttgtatgaccagaatgctacattatatatattgcaaataagatagattgtataataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49357" stop="48388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49057" g_stop="48682" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E613413" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49057" e_stop="48682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACA-T-TATATATTGCAAATAAGATAGATTGTGTAATACAATCTGAT</genome_strand>
        <mrna_strand>TATCCAAAAATGGGGTAAAACTTATGTCGCGGTCAGGCAATTCAGTGGATTTATAACTGATGATGACCTTCCAAGAGAAGCTGCTGCCCTGAGTGCCAGTATTGCTGGCACTAAATGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACTACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGACAAAGCACTTGCCATTTGAGAGGCT-C--TTGTTACTACTTATCAAAGGATACTTGATAAGTCCCTAGTAATTTTGTATGACCAGAATGCTACATTATATATATTGCAAATAAGATAGATTGTATAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733942" ref_strand="+" ref_description="SGN-E733942 [LB11BD12]">
      <seq>cattagtaataaaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatattgcaaataagatagattgtgtaatacaatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49886" stop="48383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49590" g_stop="49320" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="48683" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="820" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E733942" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49590" e_stop="49320"/>
          <exon e_start="49231" e_stop="48683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGA</genome_strand>
        <mrna_strand>CATTAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733415" ref_strand="+" ref_description="SGN-E733415 [LB04DG01]">
      <seq>cgcattaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatattgcaaataagatagattgtgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49878" stop="48392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49585" g_stop="49320" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="48692" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="805" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E733415" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49585" e_stop="49320"/>
          <exon e_start="49231" e_stop="48692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAAT</genome_strand>
        <mrna_strand>CGCATTAAA-TGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548440" ref_strand="+" ref_description="SGN-E548440 [TUS-61-D13]">
      <seq>gtttgtttctgttccttgtttccaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49836" stop="48415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49536" g_stop="49320" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="48715" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="733" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E548440" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49536" e_stop="49320"/>
          <exon e_start="49231" e_stop="48715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATT</genome_strand>
        <mrna_strand>GTTTGTTTCTGTTCCTTGTTTCC-AATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728211" ref_strand="+" ref_description="SGN-E728211 [LA17AC07]">
      <seq>acattaaaacagcaaaaagtaataaaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagtttcagaacagagttaatgagatatgggttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49903" stop="48474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49603" g_stop="49320" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="48774" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="742" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E728211" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49603" e_stop="49320"/>
          <exon e_start="49231" e_stop="48774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATC</genome_strand>
        <mrna_strand>ACATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTTCAGAACAGAGTTAATGAGATATGGGTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344561" ref_strand="+" ref_description="SGN-E344561 [cTOF-14-E21]">
      <seq>attaaaacagcaaaaagtaataaaaatgcttagtgtaagtatgaatttgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactncccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49901" stop="48478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49601" g_stop="49320" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="48778" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="736" r_length="454" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E344561" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49601" e_stop="49320"/>
          <exon e_start="49231" e_stop="48778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACT</genome_strand>
        <mrna_strand>ATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATTTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTNCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291868" ref_strand="+" ref_description="SGN-E291868 [cLET-7-L17]">
      <seq>tttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49835" stop="48511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49535" g_stop="49320" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="48811" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="637" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E291868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49535" e_stop="49320"/>
          <exon e_start="49231" e_stop="48811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCA</genome_strand>
        <mrna_strand>TTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611378" ref_strand="+" ref_description="SGN-E611378 [61129]">
      <seq>taagatgcttagtgtaagtatgaatttgttgttgatgaggctgtgtttgtttctgttgcttgtttccaaattatgcaatggttattcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgccgttatagttctcccatgtggatgtctactgctcccattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaacaattaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgtttcctcatttgttgtgagcttttatgtaccaaagaagaaccagccaaatcctcctccagctgaaggccttcatctccaaaaatggggtaaaacttatgtcgcggtcaggcaattcagtggatttataactgatgatgaccttccaagagaagctgctgccctgagtgccagtattgctggcactaaatgggcagcagccatcgacaaaagccatgctgcagacaatactacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggttaacttttgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49879" stop="48520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49580" g_stop="49320" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="48820" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="673" r_length="412" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E611378" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49580" e_stop="49320"/>
          <exon e_start="49231" e_stop="48820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTG</genome_strand>
        <mrna_strand>TAAGATGCTTAGTGTAAGTATGAATTTGTTGTTGATGAGGCTGTGTTTGTTTCTGTTGCTTGTTTCCAAATTATGCAATGGTTATTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGCCGTTATAGTTCTCCCATGTGGATGTCTACTGCTCCCATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAACAATTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGTTTCCTCATTTGTTGTGAGCTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTGAAGGCCTTCATCTCCAAAAATGGGGTAAAACTTATGTCGCGGTCAGGCAATTCAGTGGATTTATAACTGATGATGACCTTCCAAGAGAAGCTGCTGCCCTGAGTGCCAGTATTGCTGGCACTAAATGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACTACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTAACTTTTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216767" ref_strand="-" ref_description="SGN-E216767 [cLEL-1-L7](-)">
      <seq>ggttatgagaatgcttagtgtaagtatgaatctgttgatgattaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattccccgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagagatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49885" stop="48796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49586" g_stop="49320" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="49096" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="403" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E216767" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216767" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49586" e_stop="49320"/>
          <exon e_start="49231" e_stop="49096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAG</genome_strand>
        <mrna_strand>GGTTATGAGAATGCTTAGTGTAAGTATGAATCTGTTGATGATTAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCCCCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGAGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297002" ref_strand="+" ref_description="SGN-E297002 [cLET-26-P6]">
      <seq>aaaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagcctagtgatggacctttttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49880" stop="48830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49580" g_stop="49320" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49231" g_stop="49130" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="363" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E297002" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49580" e_stop="49320"/>
          <exon e_start="49231" e_stop="49130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGC</genome_strand>
        <mrna_strand>AAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCTAGTGATGGACCTTTTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716536" ref_strand="+" ref_description="SGN-E716536 [FB17BC12]">
      <seq>cgaataaatactcactagtaaaaatgaattctttgatgatcaagttgttgttttttctcgtccttatttccaatggatattcaacaaaattagattcatatcctccaacttgtaaaaaaattgaatgcccaaattatgatgtgattgaatctggaaaagactatgaaattcgtcgttacaattcccctatgtggatgtctactgaaccaattgatgatacgtcatttgtttccgccacccgaatcggtttcaccaggttatttatgtatattcaaggaaagaacgatcagcatgagaaaatggatatgacagcaccagttatgacacaagttaagccaagtgatggaccattatgttccacctcatttgttgtgagttttaacgtaccaaagaagaatcagccaaatcctccttcagctgaaggcctacatccccaaaaatggaaccaaagtagttatgccgcggtcaggcaattcagtggatttgttacggatggtgatattccgaaacaagctgctgcccttactgccagcatcgctgacactaaatgggcagcagctatcgaaaaaagcaggagtaaagataatagtacgatttatacagttgcacaatacaactctccctttgagttcagggctagagccaatgagatgtggtttacttttgttatggacactgcaattgacatttaagaggcaacaaagtttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="53055" stop="51650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52757" g_stop="52502" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52501" i_stop="52406" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52405" g_stop="51950" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="712" r_length="456" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E716536" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52757" e_stop="52502"/>
          <exon e_start="52405" e_stop="51950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTATGGACACTGCAATTGACATTTGAGAGGCAACAAAGTTTACTAT</genome_strand>
        <mrna_strand>CGAATAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG................................................................................................GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGCCAATGAGATGTGGTTTACTTTTGTTATGGACACTGCAATTGACATTTAAGAGGCAACAAAGTTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322224" ref_strand="+" ref_description="SGN-E322224 [cTOB-24-P21]">
      <seq>agaaatactcactagtaaaaatgaattctttgatgatcaagttgttgttttttctcgtccttatttccaatggatattcaacaaaattagattcatatcctccaacttgtaaaaaaattgaatgcccaaattatgatgtgattgaatctggaaaagactatgaaattcgtcgttacaattcccctatgtggatgtctactgaaccaattgatgatacgtcatttgtttccgccacccgaatcggtttcaccaggttatttatgtatattcaaggaaagaacgatcagcatgagaaaatggatatgacagcaccagttatgacacaagttaagccaagtgatggaccattatgttccacctcatttgttgtgagttttaacgtaccaaagaagaatcagccaaatcctccttcagctgaaggcctacatccccaaaaatggaaccaaagtagttatgccgcggtcaggcaattcagtggatttgttacggatggtgatattccgaaacaagctgctgcccttactgccagcatcgctgacactaaatgggcagcagctatcgaaaaaagcaggagtaaagataatagtacgatttatacagttgcacaatacaactctccctttgangtcagggctagagtcaatgagatgtggtttacttttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="53054" stop="51693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52754" g_stop="52502" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52501" i_stop="52406" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52405" g_stop="51993" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="666" r_length="413" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E322224" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52754" e_stop="52502"/>
          <exon e_start="52405" e_stop="51993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTA</genome_strand>
        <mrna_strand>AGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG................................................................................................GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGANGTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467438" ref_strand="+" ref_description="SGN-E467438 [cSTB-49-A3]">
      <seq>atactcactagtaaagatgaatgtgttgatgatcaagttgtgtttttttctagtccttatttccaatggttattcaacaaaattggattcttatcctccaacttgtcaaagaattgagtgcccaaattatgatgtgattgaatctgtaaaagactatgaaattcgtcgttacaattcccctatgtggatgtctactgaaccaattgatgatatatcatttgtttccgccaccagaactggtttcctcaggttatttaagtatattcaaggaaagaatgataagcatgataaaatagagatgacagcaccagttatgactcaagtgaagccaagtgatggaccattatgttcaacttcatttattgtgagctttaatgtaccaaagaagaatcagccaaatcctccttcagctgaaggcctacacccccaaaaatggaacgaaagtagttatgccgcggtcaggcaattcagtggatttgcatctgatgctgttattccgaaagaagctgctgccctgagtgccagcattgctggcacgaaatgggcagcagccatcgaaaaaagccggggtaaagataatagtacactttatacagttgaacaatacaactccccgtttgagttcaggggcagagttaatgagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="53050" stop="51708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52750" g_stop="52502" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52501" i_stop="52406" i_length="96">
            <donor d_prob="0.988" d_score="0.86"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52405" g_stop="52008" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="647" r_length="398" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E467438" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52750" e_stop="52502"/>
          <exon e_start="52405" e_stop="52008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGT</genome_strand>
        <mrna_strand>ATACTCACTAGTAAAGATGAATGTGTTGATGATCAAGTTGTGTTTTTTTCTAGTCCTTATTTCCAATGGTTATTCAACAAAATTGGATTCTTATCCTCCAACTTGTCAAAGAATTGAGTGCCCAAATTATGATGTGATTGAATCTGTAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATATATCATTTGTTTCCGCCACCAGAACTGGTTTCCTCAG................................................................................................GTTATTTAAGTATATTCAAGGAAAGAATGATAAGCATGATAAAATAGAGATGACAGCACCAGTTATGACTCAAGTGAAGCCAAGTGATGGACCATTATGTTCAACTTCATTTATTGTGAGCTTTAATGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACACCCCCAAAAATGGAACGAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGCATCTGATGCTGTTATTCCGAAAGAAGCTGCTGCCCTGAGTGCCAGCATTGCTGGCACGAAATGGGCAGCAGCCATCGAAAAAAGCCGGGGTAAAGATAATAGTACACTTTATACAGTTGAACAATACAACTCCCCGTTTGAGTTCAGGGGCAGAGTTAATGAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472723" ref_strand="+" ref_description="SGN-E472723 [cSTB-29-P1]">
      <seq>cctcgtgccgattcggcacgagggaaatactcactagtaaagatgaatgtgttgatgatcaagttgtgtttttttctagtccttatttccaatggttattcaacaaaattggattcttatcctccaacttgtcaaagaattgagtgcccaaattatgatgtgattgaatctgtaaaagactatgaaattcgtcgttacaattcccctatgtggatgtctactgaaccaattgatgatatatcatttgtttccgccaccagaactggtttcctcaggttatttaagtatattcaaggaaagaatgataagcatgataaaatagagatgacagcaccagttatgactcaagtgaagccaagtgatggaccattatgttcaacttcatttattgtgagctttaatgtaccaaagaagaatcagccaaatcctccttcagctgaaggcctacacccccaaaaatggaacgaaagtagttatgccgcggtcaggcaattcagtggatttgcatctgatgctgttattccgaaagaagctgctgccctgagtgccagcattgctggcacgaaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="53059" stop="48639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52752" g_stop="52502" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="275" r_length="251" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52501" i_stop="52406" i_length="96">
            <donor d_prob="0.988" d_score="0.86"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52405" g_stop="52110" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="571" r_length="296" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E472723" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52752" e_stop="52502"/>
          <exon e_start="52405" e_stop="52110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGG</genome_strand>
        <mrna_strand>AAATACTCACTAGTAAAGATGAATGTGTTGATGATCAAGTTGTGTTTTTTTCTAGTCCTTATTTCCAATGGTTATTCAACAAAATTGGATTCTTATCCTCCAACTTGTCAAAGAATTGAGTGCCCAAATTATGATGTGATTGAATCTGTAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATATATCATTTGTTTCCGCCACCAGAACTGGTTTCCTCAG................................................................................................GTTATTTAAGTATATTCAAGGAAAGAATGATAAGCATGATAAAATAGAGATGACAGCACCAGTTATGACTCAAGTGAAGCCAAGTGATGGACCATTATGTTCAACTTCATTTATTGTGAGCTTTAATGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACACCCCCAAAAATGGAACGAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGCATCTGATGCTGTTATTCCGAAAGAAGCTGCTGCCCTGAGTGCCAGCATTGCTGGCACGAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468044" ref_strand="+" ref_description="SGN-E468044 [cSTB-2-I22]">
      <seq>aagaaatactcactagtaaagatgaatgtgttgatgatcaagttgtgtttttttctagtccttatttccaatggttattcaacaaaattggattcttatcctccaacttgtcaaagaattgagtgcccaaattatgatgtgattgaatctgtaaaagactatgaaattcgtcgttaccaattcccctatgtggatgtctactgaaccaattgatgatatatcatttgtttccccccccagaactggtttcctcaggttatttaagtatattcaaggaaagaatgataagcatgataaaatagagatgacagcaccagttatgactcaagtgaagccaagtgatggaccattatgttcaacttcatttattgtgagctttaatgtaccaaagaagaatcagccaaatcctccttcagctgaaggcctacacccccaaaaatggaacgaaagtagttatgccgcggtcaggcaattcagtggatttgcatctgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="53055" stop="51876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52755" g_stop="52502" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52501" i_stop="52406" i_length="96">
            <donor d_prob="0.988" d_score="0.82"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52405" g_stop="52165" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="496" r_length="241" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E468044" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52755" e_stop="52502"/>
          <exon e_start="52405" e_stop="52165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTA-CAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGT</genome_strand>
        <mrna_strand>AAGAAATACTCACTAGTAAAGATGAATGTGTTGATGATCAAGTTGTGTTTTTTTCTAGTCCTTATTTCCAATGGTTATTCAACAAAATTGGATTCTTATCCTCCAACTTGTCAAAGAATTGAGTGCCCAAATTATGATGTGATTGAATCTGTAAAAGACTATGAAATTCGTCGTTACCAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATATATCATTTGTTTCCCCCCCCAGAACTGGTTTCCTCAG................................................................................................GTTATTTAAGTATATTCAAGGAAAGAATGATAAGCATGATAAAATAGAGATGACAGCACCAGTTATGACTCAAGTGAAGCCAAGTGATGGACCATTATGTTCAACTTCATTTATTGTGAGCTTTAATGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACACCCCCAAAAATGGAACGAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGCATCTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244181" ref_strand="+" ref_description="SGN-E244181 [cLEE-1-D6]">
      <seq>aagaaatactcactagtaaaaatgaattctttgatgatcaagttgttgttttttctcgtccttatttccaatggatattcaacaaaattagattcatatcctccaacttgtaaaaaaattgaatgcccaaattatgatgtgattgaatctggaaaagactatgaaattcgtcgttacaattcccctatgtggatgtctactgaaccaattgatgatacgtcatttgtttccgccacccgaatcggtttcaccaggttatttatgtatattcaaggaaagaacgatcagcatgagaaaatggatatgacagcaccagttatgacacaagttcagccaagtgatggaccattatgttccacctcatttgttgtgagttttaacgtaccaaagaagaatcaaccaaatcctccttcagctgaaggccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="-" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="53055" stop="51934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52755" g_stop="52502" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52501" i_stop="52406" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52405" g_stop="52234" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="426" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="-" ref_id="SGN-E244181" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52755" e_stop="52502"/>
          <exon e_start="52405" e_stop="52234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTA</genome_strand>
        <mrna_strand>AAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG................................................................................................GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTCAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAACCAAATCCTCCTTCAGCTGAAGGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544068" ref_strand="+" ref_description="SGN-E544068 [TUS-66-D9]">
      <seq>gagagagagattggtggcgctgatacggttagggagggttgttgttggggtggtggcattgatggcggaggtggttgcggtggatgtggaggtggttgacttaagtttctaaataattatacattagacataaagttcgattgttaaaggagaaaacgtgtaattttatgtgtttattaagttgccgattacgtatgttacacaaaacacctatgaattaaaaaatgaacctcacaattcaagtactagagtatttaaacatctctaatctaaaatgttatggttcagaaagatgtgttgaagttctcaatttgggttttggtgctgggtactttaatgtttttttacttaaaagttaagtgatttttaagaatttcaggatattttgattgataacagagagttgctcggacggtaaatattaagctggatacttgtggattatcaaatagaagatacatcttggatcatattcttgagctgtaacgagtgttcagaaagtctaggaaaatgtaccacatccatacgagctgaagtgttagaacattttagcccttttagtgcaactatgagccatctagtgtatgtactaaggctgtttcattgcatacaaggatgatttgttgtttgaaagagttagtacttatcaagctaaggtcgagctgttataaaccttacctgttactgcatcacctcgccagtcctagatgtgctgcttagtgtagagttctgttttgtttgctttgaagatatatggtaagcctagcttcatgcccttcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="72316" stop="73697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72616" g_stop="73397" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E544068" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72616" e_stop="73397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGTGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAGGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</genome_strand>
        <mrna_strand>GAGAGAGAGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAAGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302815" ref_strand="+" ref_description="SGN-E302815 [cLEY-2-M5]">
      <seq>agagagagattggtggcgctgatacggttagggagggttgttgttggggtggtggcattgatggcggaggtggttgcggtggatgtggaggtggttgacttaagtttctaaataattatacattagacataaagttcgattgttaaaggagaaaacgtgtaattttatgtgtttattaagttgccgattacgtatgttacacaaaacacctatgaattaaaaaatgaacctcacaattcaagtactagagtatttaaacatctctaatctaaaatgttatggttcagaaagatgtgttgaagttctcaatttgggttttggtgctgggtactttaatgtttttttacttaaaagttaagtgatttttaagaatttcaggatattttgattgataacagagagttgctcggacggtaaatattaagctggatacttgtggattatcaaatagaagatacatcttggatcatattcttgagctgtaacgagtgttcagaaagtctaggaaaatgtaccacatccatacgagctgaagtgttagaacattttagcccttttagtgcaactatgagccatctagtgtatgtactaaagctgtttcattgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="72317" stop="73524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72617" g_stop="73224" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E302815" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72617" e_stop="73224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGTGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCAT</genome_strand>
        <mrna_strand>AGAGAGAGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAAGCTGTTTCATTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544067" ref_strand="+" ref_description="SGN-E544067 [TUS-66-D9](-)">
      <seq>ttttttttatgttattattgaacgtcatacaactggttagctgctaactttagtttcaaagtgacattgttgtgcagaagggatacttatccctcctatcctttacagttgttgatataaacaattcggtgaccaaactattggctttaggtgccgagttggatggccccatcaaatatgaaatccatggaaaggttttgctgctttgaggtgtgtggatggacatatgttaggtctttatcagccgtcctaaggcatcctcgaaacaaccacttgcaggtaaaagtaatcacgacttctgtaacaaggcaaattggtttctcagcatagattttgcattcgggtgtactgttgaaagagagaatcgactcttgtacatggaggtgaagcacatatagggagtgttacagcaagaaacaatcaatacagtagctgaattcctactgtatttgtttttgatgttctgttctggttatccttttgtgtaacatgatgttttgtattcaccaacatgaattgtggtgctccacccttaaccagaggactcggattcgagcttccggtatggagaaaattttgttgagaaagccactcttgaataggtcatgcactgtacgatttggattcaatcggagctccaacgtgggctcctgacactggatgggaaaaccaaaaaaaaaaacatgatgttgtttatttaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="73289" stop="74739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73589" g_stop="73782" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73783" i_stop="73931" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73932" g_stop="74428" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="691" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="727"/>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E544067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73589" e_stop="73782"/>
          <exon e_start="73932" e_stop="74428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAGGTAACCAAAATTTCTTAAGGTTGCTTTCAAACTTGTTGACCAGCATTGGTTTATGCTCGTTATTTACACATCGATTCAGAATTTTGTTCTGCATTCAGCATTTATGTTGATGAAACTGACCTATCGCATACTTTATATGGTCCTTGTAGGTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTT</genome_strand>
        <mrna_strand>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAG.....................................................................................................................................................GTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702462" ref_strand="+" ref_description="SGN-E702462 [FA18DB07]">
      <seq>cttttctccattctcttggcattattcatcacacatcttgcccctatactcctgaacaaaatggtgttgccgaacgcaaacaccgtcacctcattgaaaccgtcgtcactctccttcatgagtctcatctccctgcatgaggcgttggccactgccaactatctcatcaaccacatgcccaaaccctccctctctaacacatctccttatgaatgtctctacacacaccgttcggattacactcaccttcgcccctttggttgtcttgcctatccttggctacgccctcacactcaacacaaacttcaactccggtccacaccatgcatctttctaggctaccatccctccataaaaggatacaaatgttttgaacccatctctcaaaaaacatatgtctctcgtcatattcgttttatcgaggaggactttccctatccccggttaagttctgtcactgccacgtccaacccactcggtattactccaatctttccaccgagctcacatggccttgtaccagcacccattaacccatccatcatacacacaccacccaatcccaacactctcatcccatctggatcacccagcacccacaatttacccatcccaccaattttcaaccctcctcattaacaacctccaccagctgaaacagcaccacctccacccccacccccatcccctttacatcacatgcaaacctattccaaatccggcattttcaagcccaaagcctacaccaccactttacctgctccctctccctctgaacctattacctacaaacaagcatctaccaacccccttttggtgtcaggctaaggatgatgaatacaggtctcttattaatcaacatacttggcaattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLe0124H12-GOLsC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLe0124H12.2" temp_strand="+" temp_description="C07SLe0124H12.2  AC234408.2 htgs_phase:2 submitted_to_sgn_as:gi|238909040|gb|AC234408.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLe0124H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="76591" stop="78070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76891" g_stop="77770" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLe0124H12.2" gen_strand="+" ref_id="SGN-E702462" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLe0124H12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76891" e_stop="77770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCCAATCTCTTGCCATTGTTCATCACACATCTTGCCCATATACTCTTGAACAAAATGGTGTTGCCGAACGTAAACACCGTCACCTCATTGAAACCGTCGTCACTCTTCTTCATGAGTCTCATCTCCCTGCACCTTTCTGGGTCGAGGCGTTGGCCACTGCCAACTATCTCATCAACCGCATGCTCACACCCTCCCTCTCTAACACATCTCCCTATGAATTTCTATACACACACCGTCCAGATTACACTCATCTTCGACCATTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACCCCGGTCTACACCATGCATCTTTCTAGGCTACCATCCCACCATAAAAGGATACAAATGTTTTGAACTCATCTCTCAAAAAACATATGTCTCTCGTCATGTTCTTTTTATCGAGGAGGATTTTCCCTATCCCCGGTTAAGCTCTGTCAATGCCACGTCCAACCCACTTGGTCTTATTCCAATCTTTCCACCGAGCTCACATGGCCTTATACCGGCATCCATTACCCCATCCATCATACACACACCACCCAATCCCAACCCTCTCATCCCATCCGGATCACCCACCACCCCCAATCCACCCATCCCACCAACTTTCAATCCTCCTTACCAACAATCTCCACCAGCCGAAACA--ACC-CCT---CCTCCACCCCCACCCCCTTTACATCATATGCAAACCCGTTCCAAATCCGACATTTTCAAGCCCAAAGTCTACACCACCACTTCACTTGCTCCCTCTCCCTCTGAACCTACTACCTATAAACAAGCATCTACCAACCCCC-TTTGGTGTCAGGCTATGGATGATGAATACAGGTCTCTTATTAATCAGCATACTTGGGAATTGGT</genome_strand>
        <mrna_strand>CTTTTCTCCATTCTCTTGGCATTATTCATCACACATCTTGCCCCTATACTCCTGAACAAAATGGTGTTGCCGAACGCAAACACCGTCACCTCATTGAAACCGTCGTCACTCTCCTTCATGAGTCTCATCTCCCTGCA----------T-GAGGCGTTGGCCACTGCCAACTATCTCATCAACCACATGCCCAAACCCTCCCTCTCTAACACATCTCCTTATGAATGTCTCTACACACACCGTTCGGATTACACTCACCTTCGCCCCTTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACTCCGGTCCACACCATGCATCTTTCTAGGCTACCATCCCTCCATAAAAGGATACAAATGTTTTGAACCCATCTCTCAAAAAACATATGTCTCTCGTCATATTCGTTTTATCGAGGAGGACTTTCCCTATCCCCGGTTAAGTTCTGTCACTGCCACGTCCAACCCACTCGGTATTACTCCAATCTTTCCACCGAGCTCACATGGCCTTGTACCAGCACCCATTAACCCATCCATCATACACACACCACCCAATCCCAACACTCTCATCCCATCTGGATCACCCAGCACCCACAATTTACCCATCCCACCAATTTTCAACCCTCCTCATTAACAACCTCCACCAGCTGAAACAGCACCACCTCCACCCCCACCCCCATCCCCTTTACATCACATGCAAACCTATTCCAAATCCGGCATTTTCAAGCCCAAAGCCTACACCACCACTTTACCTGCTCCCTCTCCCTCTGAACCTATTACCTACAAACAAGCATCTACCAACCCCCTTTTGGTGTCAGGCTAAGGATGATGAATACAGGTCTCTTATTAATCAACATACTTGGCAATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>62</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4201" PGL_stop="5981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4201" e_stop="4733"/>
            <exon e_start="4817" e_stop="5165"/>
            <exon e_start="5262" e_stop="5981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.911" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.943"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4201" e_stop="4733" e_length="533"/>
          </exon>
          <intron i_serial="1" don_prob="0.911" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4734" i_stop="4816" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="4817" e_stop="5165" e_length="349"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5166" i_stop="5261" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5262" e_stop="5981" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4201" stop="4733"/>
              <exon start="4817" stop="5127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4215" stop="4704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4219" stop="4733"/>
              <exon start="4817" stop="4865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4219" stop="4703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4234" stop="4733"/>
              <exon start="4817" stop="4863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4321" stop="4733"/>
              <exon start="4817" stop="5044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4394" stop="4733"/>
              <exon start="4817" stop="4944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4480" stop="4733"/>
              <exon start="4817" stop="4998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4602" stop="4733"/>
              <exon start="4817" stop="5165"/>
              <exon start="5262" stop="5454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4929" stop="5165"/>
              <exon start="5262" stop="5688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5130" stop="5165"/>
              <exon start="5262" stop="5981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTACAACTAAGTTCCAACAGTTGTAACAAGAAATACTTGTCTTAGATAGTAAAACCCAAAGTTTTGATCTTTTCATTGTTATTCTTCTTCTAATAACCATTTTAAGTTTCATCAAAGAAAACAATGGTGGTTTTAACAGAACCTGACAATGATCACTTACCAATAATCAACAGCAATTCTTGCAAATCCCCCTCTTTCTTCAATGATATTCCTGTAATAGACCTCTCTAAACCTGACTCCAAGAACCTCATCGTTGAGGCCTGCGAAGAATTCGGATTCTTTAAAGTCGTAAACCATGACGTTCCTATAGAATTCATAAGTAAACTCGAATCCGAAGCCATCAAATTCTTCTCCTCTCCCCTCTCTGAGAAGCTAAAAGCAGGGCCTGCTGACCCTTTTGGCTATGGCAATAAACAAATCGGACAAAGTGGCGATATCGGTTGGGTTGAATACATTCTCCTTTCAACAAACTCTGAATTCAATTACCAGAAATTCGCATCTGTATTAGGTGTCAATCCAGAAAACATTCG : AGCTGCGGTGAATGATTATGTGACAGCAGTGAAGAGAATGTCATGTGAGATTCTTGAAAAGTTGGCGGAGGGATTAAAGATTCATCCGACGAATGTTTTCAGTAAGCTTTTGAAGGATGAAAAGAGCGACTCTGTTTTCAGGCTGAATCATTATCCTCCATGTCCTGATATTCAAGAATTCAATGCCAAAAATTTGATTGGATTTGGAGAACATACCGATCCACAAATCATATCGGTATTAAGATCCAACAACACATCCGGCCTTCAAATTTTACTCAAAAATGGCAACTGGTTTTCTGTGCCACCTGATCAGAGTTCTTTTTTCGTCAATGTTGGCGACTCATTACAG : GTGATGACTAATGGAAGGTTTAAGAGTGTGAAGCATAGGGTGTTGACAAACAGTGTAAAATCAAGATTATCAATGATATATTTTGGAGGACCACCATTGAGTGAAAAGATAGCACCATTGCCATCACTAATGGAAGGAGAAGAAAGCAGCTTGTACAAAGAGTTTACATGGTTTGAGTACAAAAAATCAGCTTTCAAATCTAGACTAGCACAAAACAGATTAACCCTGTTTGAGAAATTTGGAACCTCATAGTGGTTTTTAACGAGAGACAAAGCCAGAATTTAAAGTTTATCATTTTATATGTACATATTTAATAGATTCCTCCGCAAATATACCATGTTTGGATCAAAAGGGTAGTGATATCGAAAAACTCAAATGATTTTCCTTTGATAATATAACAATATGTTGTTCGATCAAACTCAAATGTTTTTATTTCTAAATGCTTCATAGATGTCTATCCTTATTCCTTGCCTTCATCGATAAAGATTCATCCCGAGTTATATTTGACCCCATTATTATTATTTTTTTTAAAAAAATTATATTACAATTTATTTAAATTCATAGTTGAAAAATTTGTGTATGTGAACCATTGATATTAAAGAGATTTTTTTTTTCCTGGATAGGGTTATGAGATGGAATTTATGAACAAGTTTGTGATAGCGTGTACTATCATCAACCAAGTTATATATATAGTGATGATACTTCACATGATTATTCCAA</gDNA_template>
            <first_frame> Q  L  Q  L  S  S  N  S  C  N  K  K  Y  L  S  *  I  V  K  P  K  V  L  I  F  S  L  L  F  F  F  *  *  P  F  *  V  S  S  K  K  T  M  V  V  L  T  E  P  D  N  D  H  L  P  I  I  N  S  N  S  C  K  S  P  S  F  F  N  D  I  P  V  I  D  L  S  K  P  D  S  K  N  L  I  V  E  A  C  E  E  F  G  F  F  K  V  V  N  H  D  V  P  I  E  F  I  S  K  L  E  S  E  A  I  K  F  F  S  S  P  L  S  E  K  L  K  A  G  P  A  D  P  F  G  Y  G  N  K  Q  I  G  Q  S  G  D  I  G  W  V  E  Y  I  L  L  S  T  N  S  E  F  N  Y  Q  K  F  A  S  V  L  G  V  N  P  E  N  I  R :   A  A  V  N  D  Y  V  T  A  V  K  R  M  S  C  E  I  L  E  K  L  A  E  G  L  K  I  H  P  T  N  V  F  S  K  L  L  K  D  E  K  S  D  S  V  F  R  L  N  H  Y  P  P  C  P  D  I  Q  E  F  N  A  K  N  L  I  G  F  G  E  H  T  D  P  Q  I  I  S  V  L  R  S  N  N  T  S  G  L  Q  I  L  L  K  N  G  N  W  F  S  V  P  P  D  Q  S  S  F  F  V  N  V  G  D  S  L  Q  :  V  M  T  N  G  R  F  K  S  V  K  H  R  V  L  T  N  S  V  K  S  R  L  S  M  I  Y  F  G  G  P  P  L  S  E  K  I  A  P  L  P  S  L  M  E  G  E  E  S  S  L  Y  K  E  F  T  W  F  E  Y  K  K  S  A  F  K  S  R  L  A  Q  N  R  L  T  L  F  E  K  F  G  T  S  *  W  F  L  T  R  D  K  A  R  I  *  S  L  S  F  Y  M  Y  I  F  N  R  F  L  R  K  Y  T  M  F  G  S  K  G  *  *  Y  R  K  T  Q  M  I  F  L  *  *  Y  N  N  M  L  F  D  Q  T  Q  M  F  L  F  L  N  A  S  *  M  S  I  L  I  P  C  L  H  R  *  R  F  I  P  S  Y  I  *  P  H  Y  Y  Y  F  F  *  K  N  Y  I  T  I  Y  L  N  S  *  L  K  N  L  C  M  *  T  I  D  I  K  E  I  F  F  F  L  D  R  V  M  R  W  N  L  *  T  S  L  *  *  R  V  L  S  S  T  K  L  Y  I  *  *  *  Y  F  T  *  L  F  Q </first_frame>
            <second_frame>  N  Y  N  *  V  P  T  V  V  T  R  N  T  C  L  R  *  *  N  P  K  F  *  S  F  H  C  Y  S  S  S  N  N  H  F  K  F  H  Q  R  K  Q  W  W  F  *  Q  N  L  T  M  I  T  Y  Q  *  S  T  A  I  L  A  N  P  P  L  S  S  M  I  F  L  *  *  T  S  L  N  L  T  P  R  T  S  S  L  R  P  A  K  N  S  D  S  L  K  S  *  T  M  T  F  L  *  N  S  *  V  N  S  N  P  K  P  S  N  S  S  P  L  P  S  L  R  S  *  K  Q  G  L  L  T  L  L  A  M  A  I  N  K  S  D  K  V  A  I  S  V  G  L  N  T  F  S  F  Q  Q  T  L  N  S  I  T  R  N  S  H  L  Y  *  V  S  I  Q  K  T  F   : E  L  R  *  M  I  M  *  Q  Q  *  R  E  C  H  V  R  F  L  K  S  W  R  R  D  *  R  F  I  R  R  M  F  S  V  S  F  *  R  M  K  R  A  T  L  F  S  G  *  I  I  I  L  H  V  L  I  F  K  N  S  M  P  K  I  *  L  D  L  E  N  I  P  I  H  K  S  Y  R  Y  *  D  P  T  T  H  P  A  F  K  F  Y  S  K  M  A  T  G  F  L  C  H  L  I  R  V  L  F  S  S  M  L  A  T  H  Y  R :   *  *  L  M  E  G  L  R  V  *  S  I  G  C  *  Q  T  V  *  N  Q  D  Y  Q  *  Y  I  L  E  D  H  H  *  V  K  R  *  H  H  C  H  H  *  W  K  E  K  K  A  A  C  T  K  S  L  H  G  L  S  T  K  N  Q  L  S  N  L  D  *  H  K  T  D  *  P  C  L  R  N  L  E  P  H  S  G  F  *  R  E  T  K  P  E  F  K  V  Y  H  F  I  C  T  Y  L  I  D  S  S  A  N  I  P  C  L  D  Q  K  G  S  D  I  E  K  L  K  *  F  S  F  D  N  I  T  I  C  C  S  I  K  L  K  C  F  Y  F  *  M  L  H  R  C  L  S  L  F  L  A  F  I  D  K  D  S  S  R  V  I  F  D  P  I  I  I  I  F  F  K  K  I  I  L  Q  F  I  *  I  H  S  *  K  I  C  V  C  E  P  L  I  L  K  R  F  F  F  S  W  I  G  L  *  D  G  I  Y  E  Q  V  C  D  S  V  Y  Y  H  Q  P  S  Y  I  Y  S  D  D  T  S  H  D  Y  S   </second_frame>
            <third_frame>   T  T  T  K  F  Q  Q  L  *  Q  E  I  L  V  L  D  S  K  T  Q  S  F  D  L  F  I  V  I  L  L  L  I  T  I  L  S  F  I  K  E  N  N  G  G  F  N  R  T  *  Q  *  S  L  T  N  N  Q  Q  Q  F  L  Q  I  P  L  F  L  Q  *  Y  S  C  N  R  P  L  *  T  *  L  Q  E  P  H  R  *  G  L  R  R  I  R  I  L  *  S  R  K  P  *  R  S  Y  R  I  H  K  *  T  R  I  R  S  H  Q  I  L  L  L  S  P  L  *  E  A  K  S  R  A  C  *  P  F  W  L  W  Q  *  T  N  R  T  K  W  R  Y  R  L  G  *  I  H  S  P  F  N  K  L  *  I  Q  L  P  E  I  R  I  C  I  R  C  Q  S  R  K  H  S  :  S  C  G  E  *  L  C  D  S  S  E  E  N  V  M  *  D  S  *  K  V  G  G  G  I  K  D  S  S  D  E  C  F  Q  *  A  F  E  G  *  K  E  R  L  C  F  Q  A  E  S  L  S  S  M  S  *  Y  S  R  I  Q  C  Q  K  F  D  W  I  W  R  T  Y  R  S  T  N  H  I  G  I  K  I  Q  Q  H  I  R  P  S  N  F  T  Q  K  W  Q  L  V  F  C  A  T  *  S  E  F  F  F  R  Q  C  W  R  L  I  T   : G  D  D  *  W  K  V  *  E  C  E  A  *  G  V  D  K  Q  C  K  I  K  I  I  N  D  I  F  W  R  T  T  I  E  *  K  D  S  T  I  A  I  T  N  G  R  R  R  K  Q  L  V  Q  R  V  Y  M  V  *  V  Q  K  I  S  F  Q  I  *  T  S  T  K  Q  I  N  P  V  *  E  I  W  N  L  I  V  V  F  N  E  R  Q  S  Q  N  L  K  F  I  I  L  Y  V  H  I  *  *  I  P  P  Q  I  Y  H  V  W  I  K  R  V  V  I  S  K  N  S  N  D  F  P  L  I  I  *  Q  Y  V  V  R  S  N  S  N  V  F  I  S  K  C  F  I  D  V  Y  P  Y  S  L  P  S  S  I  K  I  H  P  E  L  Y  L  T  P  L  L  L  F  F  L  K  K  L  Y  Y  N  L  F  K  F  I  V  E  K  F  V  Y  V  N  H  *  Y  *  R  D  F  F  F  P  G  *  G  Y  E  M  E  F  M  N  K  F  V  I  A  C  T  I  I  N  Q  V  I  Y  I  V  M  I  L  H  M  I  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4309" stop="4733"/>
                    <exon start="4817" stop="5165"/>
                    <exon start="5262" stop="5513"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSKKTMVVLTEPDNDHLPIINSNSCKSPSFFNDIPVIDLSKPDSKNLIVEACEEFGFFKVVNHDVPIEFISKLESEAIKFFSSPLSEKLKAGPADPFGYGNKQIGQSGDIGWVEYILLSTNSEFNYQKFASVLGVNPENIRAAVNDYVTAVKRMSCEILEKLAEGLKIHPTNVFSKLLKDEKSDSVFRLNHYPPCPDIQEFNAKNLIGFGEHTDPQIISVLRSNNTSGLQILLKNGNWFSVPPDQSSFFVNVGDSLQVMTNGRFKSVKHRVLTNSVKSRLSMIYFGGPPLSEKIAPLPSLMEGEESSLYKEFTWFEYKKSAFKSRLAQNRLTLFEKFGTS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5660" stop="5854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYVVRSNSNVFISKCFIDVYPYSLPSSIKIHPELYLTPLLLFFLKKLYYNLFKFIVEKFVYVNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9088" PGL_stop="9725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9088" e_stop="9725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="9088" e_stop="9725" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9088" stop="9725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9089" stop="9694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATACTCATTTTTTTCCATGTGGGGTTTACTTTTTGTGAATGAATATGAATTAAAGATTCAATTTTTAGTACATGGTGTTGATAAAGATTATATTGTGTTTTTATCTTTGTTGTGTGCTATTTAATTTTTTTTTGAATAAGTTGTGTGAATTTTATTTGGCAAAGTTTTAAGAAAATAAATAGAACTTTTGAATCATTATTTGTATGAATTGTCATTTAAGTTCTCTTACTTAGAAAAAATGCTGAGGTTTTTTCCCCTTTGAATTCAGTTTTAGTCATTGGTTGAACTTAACTTTTGCAATCCCCTTTCTTCATTTAGACTGTTGAACTTATTTTTTTTATCATGTTATGCATAATTTCAGCAATATGCTTAAGTTCATGAGTACAGAGTATTACAGGGCCTCTTGCCCTCTTAATAATTGTGATTCTCTATAACCAAGTAGTCTCTGGATACGCGCTTTGTACGTGTTACGTATTCACGAGTATGTAAGATTTAAAAAAATTGCATAAATGCAATATAGCAATGCTTTTGACTTAATTAGATATTTCATCTGTCTCAACTTATCTGACATTGTTTGGTTGCGCATAGAGTTTAAGAAAAAAAAAGAAAAGACTGTTGTGATACCTTGGATTTC</gDNA_template>
            <first_frame> Q  N  T  H  F  F  P  C  G  V  Y  F  L  *  M  N  M  N  *  R  F  N  F  *  Y  M  V  L  I  K  I  I  L  C  F  Y  L  C  C  V  L  F  N  F  F  L  N  K  L  C  E  F  Y  L  A  K  F  *  E  N  K  *  N  F  *  I  I  I  C  M  N  C  H  L  S  S  L  T  *  K  K  C  *  G  F  F  P  F  E  F  S  F  S  H  W  L  N  L  T  F  A  I  P  F  L  H  L  D  C  *  T  Y  F  F  Y  H  V  M  H  N  F  S  N  M  L  K  F  M  S  T  E  Y  Y  R  A  S  C  P  L  N  N  C  D  S  L  *  P  S  S  L  W  I  R  A  L  Y  V  L  R  I  H  E  Y  V  R  F  K  K  I  A  *  M  Q  Y  S  N  A  F  D  L  I  R  Y  F  I  C  L  N  L  S  D  I  V  W  L  R  I  E  F  K  K  K  K  E  K  T  V  V  I  P  W  I   </first_frame>
            <second_frame>  K  I  L  I  F  F  H  V  G  F  T  F  C  E  *  I  *  I  K  D  S  I  F  S  T  W  C  *  *  R  L  Y  C  V  F  I  F  V  V  C  Y  L  I  F  F  *  I  S  C  V  N  F  I  W  Q  S  F  K  K  I  N  R  T  F  E  S  L  F  V  *  I  V  I  *  V  L  L  L  R  K  N  A  E  V  F  S  P  L  N  S  V  L  V  I  G  *  T  *  L  L  Q  S  P  F  F  I  *  T  V  E  L  I  F  F  I  M  L  C  I  I  S  A  I  C  L  S  S  *  V  Q  S  I  T  G  P  L  A  L  L  I  I  V  I  L  Y  N  Q  V  V  S  G  Y  A  L  C  T  C  Y  V  F  T  S  M  *  D  L  K  K  L  H  K  C  N  I  A  M  L  L  T  *  L  D  I  S  S  V  S  T  Y  L  T  L  F  G  C  A  *  S  L  R  K  K  K  K  R  L  L  *  Y  L  G  F  </second_frame>
            <third_frame>   K  Y  S  F  F  S  M  W  G  L  L  F  V  N  E  Y  E  L  K  I  Q  F  L  V  H  G  V  D  K  D  Y  I  V  F  L  S  L  L  C  A  I  *  F  F  F  E  *  V  V  *  I  L  F  G  K  V  L  R  K  *  I  E  L  L  N  H  Y  L  Y  E  L  S  F  K  F  S  Y  L  E  K  M  L  R  F  F  P  L  *  I  Q  F  *  S  L  V  E  L  N  F  C  N  P  L  S  S  F  R  L  L  N  L  F  F  L  S  C  Y  A  *  F  Q  Q  Y  A  *  V  H  E  Y  R  V  L  Q  G  L  L  P  S  *  *  L  *  F  S  I  T  K  *  S  L  D  T  R  F  V  R  V  T  Y  S  R  V  C  K  I  *  K  N  C  I  N  A  I  *  Q  C  F  *  L  N  *  I  F  H  L  S  Q  L  I  *  H  C  L  V  A  H  R  V  *  E  K  K  R  K  D  C  C  D  T  L  D  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLe0124H12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="9900" PGL_stop="10797"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9900" e_stop="10313"/>
            <exon e_start="10496" e_stop="10797"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.941" e_score="0.903"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="9900" e_stop="10313" e_length="414"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.941">
            <gDNA_intron_boundary i_start="10314" i_stop="10495" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="10496" e_stop="10797" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9900" stop="10313"/>
              <exon start="10496" stop="10797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9900" stop="10234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473251" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAGTCCTTAAGATTAGCCCGGCGTTGTTATGTTATAAGAATAAGAAAAATGAAACTGCGCTTCACATTGCAGCTAATGTAGGACAAAGTGAAGTGGTGAGTGAACTACTCAGCATACAAGGACAGGAGACAGTACTTGTGAGGATGAAGGATGACATTGGAGATACGGCCATGCACAAGGCCGTTAGAAGTGGACACATTGACATTGTTAGGATCTTGGTGAAATTATTACTAGATCCTGAACACGATTTCCCAGCAAATAAAGCAGAGGAGACACCACTTTATTTGGCAGCGGAGTCAGGTTTTCATGATGCTTTGATTGAAATCTTGAACGTTTGCAAAGAACCAACACATGTTGCAGGTCCATCCAATCGAACACCTCTACATGCAGCTGTGATTCAAGAACACACGG : AATGCGCGAGATTACTATGGCAATGGAATAAACCTTTATGTGAAGAATCTGATATATGGGGTTGGAATTCACTACACTATGCGGTTAAACAAGGATTGACAGAAATAGTTTCGGATATGTTGGGATGGAAGAAATCTTTAGCCTACCTTCCGGCAGGCAGTGAAAATGATTGGACTACAGCATTTCACATTGCAGCTAGTGAAGGTGATGCATTGATGATATATGAGTTATTAAACCACTGCCTGGATTGTTGGGACATGGTTGATAGCAATGGCCAAAATGCACTTCATGTTGCCATATTG</gDNA_template>
            <first_frame> E  K  S  L  R  L  A  R  R  C  Y  V  I  R  I  R  K  M  K  L  R  F  T  L  Q  L  M  *  D  K  V  K  W  *  V  N  Y  S  A  Y  K  D  R  R  Q  Y  L  *  G  *  R  M  T  L  E  I  R  P  C  T  R  P  L  E  V  D  T  L  T  L  L  G  S  W  *  N  Y  Y  *  I  L  N  T  I  S  Q  Q  I  K  Q  R  R  H  H  F  I  W  Q  R  S  Q  V  F  M  M  L  *  L  K  S  *  T  F  A  K  N  Q  H  M  L  Q  V  H  P  I  E  H  L  Y  M  Q  L  *  F  K  N  T  R  :  N  A  R  D  Y  Y  G  N  G  I  N  L  Y  V  K  N  L  I  Y  G  V  G  I  H  Y  T  M  R  L  N  K  D  *  Q  K  *  F  R  I  C  W  D  G  R  N  L  *  P  T  F  R  Q  A  V  K  M  I  G  L  Q  H  F  T  L  Q  L  V  K  V  M  H  *  *  Y  M  S  Y  *  T  T  A  W  I  V  G  T  W  L  I  A  M  A  K  M  H  F  M  L  P  Y   </first_frame>
            <second_frame>  R  S  P  *  D  *  P  G  V  V  M  L  *  E  *  E  K  *  N  C  A  S  H  C  S  *  C  R  T  K  *  S  G  E  *  T  T  Q  H  T  R  T  G  D  S  T  C  E  D  E  G  *  H  W  R  Y  G  H  A  Q  G  R  *  K  W  T  H  *  H  C  *  D  L  G  E  I  I  T  R  S  *  T  R  F  P  S  K  *  S  R  G  D  T  T  L  F  G  S  G  V  R  F  S  *  C  F  D  *  N  L  E  R  L  Q  R  T  N  T  C  C  R  S  I  Q  S  N  T  S  T  C  S  C  D  S  R  T  H  G :   M  R  E  I  T  M  A  M  E  *  T  F  M  *  R  I  *  Y  M  G  L  E  F  T  T  L  C  G  *  T  R  I  D  R  N  S  F  G  Y  V  G  M  E  E  I  F  S  L  P  S  G  R  Q  *  K  *  L  D  Y  S  I  S  H  C  S  *  *  R  *  C  I  D  D  I  *  V  I  K  P  L  P  G  L  L  G  H  G  *  *  Q  W  P  K  C  T  S  C  C  H  I  </second_frame>
            <third_frame>   E  V  L  K  I  S  P  A  L  L  C  Y  K  N  K  K  N  E  T  A  L  H  I  A  A  N  V  G  Q  S  E  V  V  S  E  L  L  S  I  Q  G  Q  E  T  V  L  V  R  M  K  D  D  I  G  D  T  A  M  H  K  A  V  R  S  G  H  I  D  I  V  R  I  L  V  K  L  L  L  D  P  E  H  D  F  P  A  N  K  A  E  E  T  P  L  Y  L  A  A  E  S  G  F  H  D  A  L  I  E  I  L  N  V  C  K  E  P  T  H  V  A  G  P  S  N  R  T  P  L  H  A  A  V  I  Q  E  H  T   : E  C  A  R  L  L  W  Q  W  N  K  P  L  C  E  E  S  D  I  W  G  W  N  S  L  H  Y  A  V  K  Q  G  L  T  E  I  V  S  D  M  L  G  W  K  K  S  L  A  Y  L  P  A  G  S  E  N  D  W  T  T  A  F  H  I  A  A  S  E  G  D  A  L  M  I  Y  E  L  L  N  H  C  L  D  C  W  D  M  V  D  S  N  G  Q  N  A  L  H  V  A  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9902" stop="10313"/>
                    <exon start="10496" stop="10797"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVLKISPALLCYKNKKNETALHIAANVGQSEVVSELLSIQGQETVLVRMKDDIGDTAMHKAVRSGHIDIVRILVKLLLDPEHDFPANKAEETPLYLAAESGFHDALIEILNVCKEPTHVAGPSNRTPLHAAVIQEHTECARLLWQWNKPLCEESDIWGWNSLHYAVKQGLTEIVSDMLGWKKSLAYLPAGSENDWTTAFHIAASEGDALMIYELLNHCLDCWDMVDSNGQNALHVAIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="11485" PGL_stop="12143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11485" e_stop="12143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="11485" e_stop="12143" e_length="659"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11485" stop="12143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGCAGCTCAAATACAAGTAGTTGTAGCTACTCTCCTAATGACAGTCACGTTCGCTGCTGGTTTCACATTGCCAGGAGGTTTATACAACGATGACAGTCCTAATAAAGGGATGGCTATTCTATTAAGGAAAACAGCGTTTCGTGCATTTGTTATTTCAGATGTCCTGGCATTCGCATTCTCAGCTGGTGCAATATTCATCTACTTCTTCATGGCAGATTGCGATGTAGACGAAGATGAAGAATGTAAAAGGGACTGGTTCAAAGTTTTAAGAAGTTATTATTATATAGCAGGTATTTTGCAACTTTTGGCAATGGGTGCTGTTGTAATTGCATTTGTAACTGGTATGTATGCTACTTTAGCAAATTCACTTGCACTTGCTATTAGTGTTTGTGTCATTGGTTGTGTCTCTTTTCTTATGTACTTTTGGATTATCATTTGGGTATAAAAAAACAAGAAGAAACTCTCAAGGGATCTTGCTTTTTAGGCCTATTGAGCCAACAAACATACTTTGTAGTAATGCTCAAGTTGCCATCAAATACTTGGCCCAAACATACTTTGTATTAAAGTTTATGGTTAGACTAATATTGAGTGCTAAATAAGTACTTCTTTGTATATTTTCAAGTGAATTTTTATTGAACTTTGAAATTGGTAATTTT</gDNA_template>
            <first_frame> E  G  S  S  N  T  S  S  C  S  Y  S  P  N  D  S  H  V  R  C  W  F  H  I  A  R  R  F  I  Q  R  *  Q  S  *  *  R  D  G  Y  S  I  K  E  N  S  V  S  C  I  C  Y  F  R  C  P  G  I  R  I  L  S  W  C  N  I  H  L  L  L  H  G  R  L  R  C  R  R  R  *  R  M  *  K  G  L  V  Q  S  F  K  K  L  L  L  Y  S  R  Y  F  A  T  F  G  N  G  C  C  C  N  C  I  C  N  W  Y  V  C  Y  F  S  K  F  T  C  T  C  Y  *  C  L  C  H  W  L  C  L  F  S  Y  V  L  L  D  Y  H  L  G  I  K  K  Q  E  E  T  L  K  G  S  C  F  L  G  L  L  S  Q  Q  T  Y  F  V  V  M  L  K  L  P  S  N  T  W  P  K  H  T  L  Y  *  S  L  W  L  D  *  Y  *  V  L  N  K  Y  F  F  V  Y  F  Q  V  N  F  Y  *  T  L  K  L  V  I   </first_frame>
            <second_frame>  K  A  A  Q  I  Q  V  V  V  A  T  L  L  M  T  V  T  F  A  A  G  F  T  L  P  G  G  L  Y  N  D  D  S  P  N  K  G  M  A  I  L  L  R  K  T  A  F  R  A  F  V  I  S  D  V  L  A  F  A  F  S  A  G  A  I  F  I  Y  F  F  M  A  D  C  D  V  D  E  D  E  E  C  K  R  D  W  F  K  V  L  R  S  Y  Y  Y  I  A  G  I  L  Q  L  L  A  M  G  A  V  V  I  A  F  V  T  G  M  Y  A  T  L  A  N  S  L  A  L  A  I  S  V  C  V  I  G  C  V  S  F  L  M  Y  F  W  I  I  I  W  V  *  K  N  K  K  K  L  S  R  D  L  A  F  *  A  Y  *  A  N  K  H  T  L  *  *  C  S  S  C  H  Q  I  L  G  P  N  I  L  C  I  K  V  Y  G  *  T  N  I  E  C  *  I  S  T  S  L  Y  I  F  K  *  I  F  I  E  L  *  N  W  *  F  </second_frame>
            <third_frame>   R  Q  L  K  Y  K  *  L  *  L  L  S  *  *  Q  S  R  S  L  L  V  S  H  C  Q  E  V  Y  T  T  M  T  V  L  I  K  G  W  L  F  Y  *  G  K  Q  R  F  V  H  L  L  F  Q  M  S  W  H  S  H  S  Q  L  V  Q  Y  S  S  T  S  S  W  Q  I  A  M  *  T  K  M  K  N  V  K  G  T  G  S  K  F  *  E  V  I  I  I  *  Q  V  F  C  N  F  W  Q  W  V  L  L  *  L  H  L  *  L  V  C  M  L  L  *  Q  I  H  L  H  L  L  L  V  F  V  S  L  V  V  S  L  F  L  C  T  F  G  L  S  F  G  Y  K  K  T  R  R  N  S  Q  G  I  L  L  F  R  P  I  E  P  T  N  I  L  C  S  N  A  Q  V  A  I  K  Y  L  A  Q  T  Y  F  V  L  K  F  M  V  R  L  I  L  S  A  K  *  V  L  L  C  I  F  S  S  E  F  L  L  N  F  E  I  G  N  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11486" stop="11932"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAAQIQVVVATLLMTVTFAAGFTLPGGLYNDDSPNKGMAILLRKTAFRAFVISDVLAFAFSAGAIFIYFFMADCDVDEDEECKRDWFKVLRSYYYIAGILQLLAMGAVVIAFVTGMYATLANSLALAISVCVIGCVSFLMYFWIIIWV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="17081" PGL_stop="18202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17081" e_stop="17645"/>
            <exon e_start="18178" e_stop="18202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.939" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17081" e_stop="17645" e_length="565"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.939">
            <gDNA_intron_boundary i_start="17646" i_stop="18177" i_length="532"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18178" e_stop="18202" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17081" stop="17645"/>
              <exon start="18178" stop="18202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315717" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGATGCTGCAATGGAAGGGGAACTGGTATATTACAATTTTTCAGTTGTTGATCATCTGACAAGGGATGAAGAAAATGGTTACCAAGTCACTCCAAAGGGAAACACAATCCTTCATGTGGCAGCTCTCTTTGGCCGACAGAATTTTGTGAGAGAAGTCCTTAAGCGTACCCCGGCATTGTTACTTTATAAGAATAAGAAAAATGAAACTGCGCTTCACATTGCAGCTAATGTAGGACAAAGTGAAGTGGTAAATGAACTGCTTAGCATACAAGGACAGGAGACAGTACTTGTGAGGATGACGGATGACATTGGAGATACGGCCTTGCACAAGGCCGTTAGAAGTGGACACATTGACATTGTGAGGATCTTGATGAATTTATTACTAGATCCTGAACACGACTTCCCAGCAAATAAGGCAGAGGAGACACCACTTTATCTGGCAGCGGAGTCAGGTTTTCATGATGCTTTGATTGAAATCTTGAAAGTTTGCAAAGAACCAACACATGTTGCAGGTCCATCCAATCGAACACCTCTACATGCAGCTGTGATTCAAGAACACGCGG : AATGCGCGATGGCACTATTGCATTG</gDNA_template>
            <first_frame> Y  D  A  A  M  E  G  E  L  V  Y  Y  N  F  S  V  V  D  H  L  T  R  D  E  E  N  G  Y  Q  V  T  P  K  G  N  T  I  L  H  V  A  A  L  F  G  R  Q  N  F  V  R  E  V  L  K  R  T  P  A  L  L  L  Y  K  N  K  K  N  E  T  A  L  H  I  A  A  N  V  G  Q  S  E  V  V  N  E  L  L  S  I  Q  G  Q  E  T  V  L  V  R  M  T  D  D  I  G  D  T  A  L  H  K  A  V  R  S  G  H  I  D  I  V  R  I  L  M  N  L  L  L  D  P  E  H  D  F  P  A  N  K  A  E  E  T  P  L  Y  L  A  A  E  S  G  F  H  D  A  L  I  E  I  L  K  V  C  K  E  P  T  H  V  A  G  P  S  N  R  T  P  L  H  A  A  V  I  Q  E  H  A   : E  C  A  M  A  L  L  H   </first_frame>
            <second_frame>  T  M  L  Q  W  K  G  N  W  Y  I  T  I  F  Q  L  L  I  I  *  Q  G  M  K  K  M  V  T  K  S  L  Q  R  E  T  Q  S  F  M  W  Q  L  S  L  A  D  R  I  L  *  E  K  S  L  S  V  P  R  H  C  Y  F  I  R  I  R  K  M  K  L  R  F  T  L  Q  L  M  *  D  K  V  K  W  *  M  N  C  L  A  Y  K  D  R  R  Q  Y  L  *  G  *  R  M  T  L  E  I  R  P  C  T  R  P  L  E  V  D  T  L  T  L  *  G  S  *  *  I  Y  Y  *  I  L  N  T  T  S  Q  Q  I  R  Q  R  R  H  H  F  I  W  Q  R  S  Q  V  F  M  M  L  *  L  K  S  *  K  F  A  K  N  Q  H  M  L  Q  V  H  P  I  E  H  L  Y  M  Q  L  *  F  K  N  T  R  :  N  A  R  W  H  Y  C  I  </second_frame>
            <third_frame>   R  C  C  N  G  R  G  T  G  I  L  Q  F  F  S  C  *  S  S  D  K  G  *  R  K  W  L  P  S  H  S  K  G  K  H  N  P  S  C  G  S  S  L  W  P  T  E  F  C  E  R  S  P  *  A  Y  P  G  I  V  T  L  *  E  *  E  K  *  N  C  A  S  H  C  S  *  C  R  T  K  *  S  G  K  *  T  A  *  H  T  R  T  G  D  S  T  C  E  D  D  G  *  H  W  R  Y  G  L  A  Q  G  R  *  K  W  T  H  *  H  C  E  D  L  D  E  F  I  T  R  S  *  T  R  L  P  S  K  *  G  R  G  D  T  T  L  S  G  S  G  V  R  F  S  *  C  F  D  *  N  L  E  S  L  Q  R  T  N  T  C  C  R  S  I  Q  S  N  T  S  T  C  S  C  D  S  R  T  R  G :   M  R  D  G  T  I  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17081" stop="17645"/>
                    <exon start="18178" stop="18200"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDAAMEGELVYYNFSVVDHLTRDEENGYQVTPKGNTILHVAALFGRQNFVREVLKRTPALLLYKNKKNETALHIAANVGQSEVVNELLSIQGQETVLVRMTDDIGDTALHKAVRSGHIDIVRILMNLLLDPEHDFPANKAEETPLYLAAESGFHDALIEILKVCKEPTHVAGPSNRTPLHAAVIQEHAECAMALLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="29358" PGL_stop="30006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29358" e_stop="30006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="29358" e_stop="30006" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29358" stop="30006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29359" stop="29743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  *  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  I  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29359" stop="30006"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="30017" PGL_stop="30824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30017" e_stop="30824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30017" e_stop="30824" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30017" stop="30824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30019" stop="30822"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="38106" PGL_stop="43852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38127" e_stop="38293"/>
            <exon e_start="39308" e_stop="39416"/>
            <exon e_start="41064" e_stop="41500"/>
            <exon e_start="43027" e_stop="43417"/>
            <exon e_start="43561" e_stop="43852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.957" e_score="0.988"/>
          <exon-intron don_prob="0.980" acc_prob="0.949" e_score="0.991"/>
          <exon-intron don_prob="0.992" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.926" e_score="0.954"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="38127" e_stop="38293" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.957">
            <gDNA_intron_boundary i_start="38294" i_stop="39307" i_length="1014"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="39308" e_stop="39416" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.949">
            <gDNA_intron_boundary i_start="39417" i_stop="41063" i_length="1647"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41064" e_stop="41500" e_length="437"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.779">
            <gDNA_intron_boundary i_start="41501" i_stop="43026" i_length="1526"/>
          </intron>
          <exon e_serial="4" e_score="0.954">
            <gDNA_exon_boundary e_start="43027" e_stop="43417" e_length="391"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.926">
            <gDNA_intron_boundary i_start="43418" i_stop="43560" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="0.959">
            <gDNA_exon_boundary e_start="43561" e_stop="43852" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38127" stop="38293"/>
              <exon start="39308" stop="39416"/>
              <exon start="41064" stop="41500"/>
              <exon start="43027" stop="43166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39311" stop="39416"/>
              <exon start="41064" stop="41337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41283" stop="41500"/>
              <exon start="43027" stop="43417"/>
              <exon start="43561" stop="43649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41283" stop="41500"/>
              <exon start="43027" stop="43294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43348" stop="43417"/>
              <exon start="43561" stop="43852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481822" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATGTAGAGCATGAGCTGCTGTTTTAGTTTATGTTATGTTCTTACCAACTAAGGAATCAAAGAATCTTTGTTGGGTTTTAGAGTTGTAGAGAAACAAGAAGAAGAAAAAAACACCTATAAGGGTTAAACTGGTCTTTTAGATTTTATCAATCAAAGGAAAAAAAG : GTTTTAGACTTGTAGAGAAAAAAGAAGAAAAGGAAGACCTAGAAGGATCAAACAACAGAGTGTCGTGGTCCCATTGGTCTTTTGGATTTTATCCATCAAATTAAAAAAG : ATAATGTGGTGCTGGTGCTGGAATCATCTAACAAGAACATTACAAAATTGTGCTGCTGGTTTACTTTGGCTTTTGTAGCTTGGTAGATCAGGCTGCAACTTGAAGTTTAGTTAGATAGTTGGACATGAATTTGCTGGTGAGAACATGCTCGAGCCAAGGGAAACCGACATTCCGACTTTATTTTTGGTCTTGGTTGTGCTTCCCCTGGTTTCTTATATTCTTCTAGGAAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGTTTGCTGGCTCAACGGGCTGCTGAAGAAGCACATAAGACACAAACTATGTCTGCAGTAAGTATTACCCCTATCCCTCTTGTGCCTTTGCCAAGCAGTGCAACTCATCAGTGTGCAAGATGCCATAGTCCAGCCACAACTCGCTGCTCTCAATGCAAATCTGTTCGATATTG : CTCAGGGAAGTGTCAGATTCTCCATTGGAGACAGGTTCACAAGCTAGAGTGTCTTCAATTGGGTAATAACTGCAATAGCTCATCCTCTAAGCCTGCCTTGACTGATGAACTCCCGGGACGCATGTCATTTGATAGCTATGTTGAAGCGCAGTACAGCGACAACAACCTGAATCAGTTGTGGCTTGGCAAAACTTCTCCAGATGGGGTGACTGAAACACCCATTGTCACCCCAGTTGCCCCTATTACTGTTAGTGTGGCAACGAATACATCAGGATCTCCAAAAGTTGGGAGACGATCTGTAGACAAGAGAGTACATAAAGGCAACAGAGACATATTAAGAAGAGGGGACGGAACCATGTCTGAGAGTTCTGAACGAGCCTCTCAATCTAGG : TCAAGAGATGGTGATTCCATGCTTTCGGAACATGATAGCATCGCGGATGGGTTCATTAGTGAACATACTGATTTGATGAATACAATGGGAGAACGCCATATGTTACAAAAGCAGAAAGAACACATCTCAAGAAATCATCGTCATGTTTCAAGTTCATCGAATCTAGAAGGCCATGAAACAAATGCATGCAAGAATCAGAAGGAGCTGATTGATGAAAAAAGCCTTACACGAGAAGGCGTCGTTACCGGCACTCCGGCAATTCCATTAAACTGTTCTTCTGGAAAGACCTCTA</gDNA_template>
            <first_frame> Q  M  *  S  M  S  C  C  F  S  L  C  Y  V  L  T  N  *  G  I  K  E  S  L  L  G  F  R  V  V  E  K  Q  E  E  E  K  N  T  Y  K  G  *  T  G  L  L  D  F  I  N  Q  R  K  K  R :   F  *  T  C  R  E  K  R  R  K  G  R  P  R  R  I  K  Q  Q  S  V  V  V  P  L  V  F  W  I  L  S  I  K  L  K  K  :  I  M  W  C  W  C  W  N  H  L  T  R  T  L  Q  N  C  A  A  G  L  L  W  L  L  *  L  G  R  S  G  C  N  L  K  F  S  *  I  V  G  H  E  F  A  G  E  N  M  L  E  P  R  E  T  D  I  P  T  L  F  L  V  L  V  V  L  P  L  V  S  Y  I  L  L  G  K  W  N  E  A  A  K  K  K  E  R  V  G  L  L  A  Q  R  A  A  E  E  A  H  K  T  Q  T  M  S  A  V  S  I  T  P  I  P  L  V  P  L  P  S  S  A  T  H  Q  C  A  R  C  H  S  P  A  T  T  R  C  S  Q  C  K  S  V  R  Y  C :   S  G  K  C  Q  I  L  H  W  R  Q  V  H  K  L  E  C  L  Q  L  G  N  N  C  N  S  S  S  S  K  P  A  L  T  D  E  L  P  G  R  M  S  F  D  S  Y  V  E  A  Q  Y  S  D  N  N  L  N  Q  L  W  L  G  K  T  S  P  D  G  V  T  E  T  P  I  V  T  P  V  A  P  I  T  V  S  V  A  T  N  T  S  G  S  P  K  V  G  R  R  S  V  D  K  R  V  H  K  G  N  R  D  I  L  R  R  G  D  G  T  M  S  E  S  S  E  R  A  S  Q  S  R  :  S  R  D  G  D  S  M  L  S  E  H  D  S  I  A  D  G  F  I  S  E  H  T  D  L  M  N  T  M  G  E  R  H  M  L  Q  K  Q  K  E  H  I  S  R  N  H  R  H  V  S  S  S  S  N  L  E  G  H  E  T  N  A  C  K  N  Q  K  E  L  I  D  E  K  S  L  T  R  E  G  V  V  T  G  T  P  A  I  P  L  N  C  S  S  G  K  T  S  </first_frame>
            <second_frame>  K  C  R  A  *  A  A  V  L  V  Y  V  M  F  L  P  T  K  E  S  K  N  L  C  W  V  L  E  L  *  R  N  K  K  K  K  K  T  P  I  R  V  K  L  V  F  *  I  L  S  I  K  G  K  K   : G  F  R  L  V  E  K  K  E  E  K  E  D  L  E  G  S  N  N  R  V  S  W  S  H  W  S  F  G  F  Y  P  S  N  *  K  R :   *  C  G  A  G  A  G  I  I  *  Q  E  H  Y  K  I  V  L  L  V  Y  F  G  F  C  S  L  V  D  Q  A  A  T  *  S  L  V  R  *  L  D  M  N  L  L  V  R  T  C  S  S  Q  G  K  P  T  F  R  L  Y  F  W  S  W  L  C  F  P  W  F  L  I  F  F  *  E  N  G  M  R  Q  P  K  R  K  K  E  L  V  C  W  L  N  G  L  L  K  K  H  I  R  H  K  L  C  L  Q  *  V  L  P  L  S  L  L  C  L  C  Q  A  V  Q  L  I  S  V  Q  D  A  I  V  Q  P  Q  L  A  A  L  N  A  N  L  F  D  I   : A  Q  G  S  V  R  F  S  I  G  D  R  F  T  S  *  S  V  F  N  W  V  I  T  A  I  A  H  P  L  S  L  P  *  L  M  N  S  R  D  A  C  H  L  I  A  M  L  K  R  S  T  A  T  T  T  *  I  S  C  G  L  A  K  L  L  Q  M  G  *  L  K  H  P  L  S  P  Q  L  P  L  L  L  L  V  W  Q  R  I  H  Q  D  L  Q  K  L  G  D  D  L  *  T  R  E  Y  I  K  A  T  E  T  Y  *  E  E  G  T  E  P  C  L  R  V  L  N  E  P  L  N  L  G :   Q  E  M  V  I  P  C  F  R  N  M  I  A  S  R  M  G  S  L  V  N  I  L  I  *  *  I  Q  W  E  N  A  I  C  Y  K  S  R  K  N  T  S  Q  E  I  I  V  M  F  Q  V  H  R  I  *  K  A  M  K  Q  M  H  A  R  I  R  R  S  *  L  M  K  K  A  L  H  E  K  A  S  L  P  A  L  R  Q  F  H  *  T  V  L  L  E  R  P  L </second_frame>
            <third_frame>   N  V  E  H  E  L  L  F  *  F  M  L  C  S  Y  Q  L  R  N  Q  R  I  F  V  G  F  *  S  C  R  E  T  R  R  R  K  K  H  L  *  G  L  N  W  S  F  R  F  Y  Q  S  K  E  K  K  :  V  L  D  L  *  R  K  K  K  K  R  K  T  *  K  D  Q  T  T  E  C  R  G  P  I  G  L  L  D  F  I  H  Q  I  K  K   : D  N  V  V  L  V  L  E  S  S  N  K  N  I  T  K  L  C  C  W  F  T  L  A  F  V  A  W  *  I  R  L  Q  L  E  V  *  L  D  S  W  T  *  I  C  W  *  E  H  A  R  A  K  G  N  R  H  S  D  F  I  F  G  L  G  C  A  S  P  G  F  L  Y  S  S  R  K  M  E  *  G  S  Q  K  E  R  K  S  W  F  A  G  S  T  G  C  *  R  S  T  *  D  T  N  Y  V  C  S  K  Y  Y  P  Y  P  S  C  A  F  A  K  Q  C  N  S  S  V  C  K  M  P  *  S  S  H  N  S  L  L  S  M  Q  I  C  S  I  L  :  L  R  E  V  S  D  S  P  L  E  T  G  S  Q  A  R  V  S  S  I  G  *  *  L  Q  *  L  I  L  *  A  C  L  D  *  *  T  P  G  T  H  V  I  *  *  L  C  *  S  A  V  Q  R  Q  Q  P  E  S  V  V  A  W  Q  N  F  S  R  W  G  D  *  N  T  H  C  H  P  S  C  P  Y  Y  C  *  C  G  N  E  Y  I  R  I  S  K  S  W  E  T  I  C  R  Q  E  S  T  *  R  Q  Q  R  H  I  K  K  R  G  R  N  H  V  *  E  F  *  T  S  L  S  I  *   : V  K  R  W  *  F  H  A  F  G  T  *  *  H  R  G  W  V  H  *  *  T  Y  *  F  D  E  Y  N  G  R  T  P  Y  V  T  K  A  E  R  T  H  L  K  K  S  S  S  C  F  K  F  I  E  S  R  R  P  *  N  K  C  M  Q  E  S  E  G  A  D  *  *  K  K  P  Y  T  R  R  R  R  Y  R  H  S  G  N  S  I  K  L  F  F  W  K  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41178" stop="41500"/>
                    <exon start="43027" stop="43417"/>
                    <exon start="43561" stop="43851"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVGHEFAGENMLEPRETDIPTLFLVLVVLPLVSYILLGKWNEAAKKKERVGLLAQRAAEEAHKTQTMSAVSITPIPLVPLPSSATHQCARCHSPATTRCSQCKSVRYCSGKCQILHWRQVHKLECLQLGNNCNSSSSKPALTDELPGRMSFDSYVEAQYSDNNLNQLWLGKTSPDGVTETPIVTPVAPITVSVATNTSGSPKVGRRSVDKRVHKGNRDILRRGDGTMSESSERASQSRSRDGDSMLSEHDSIADGFISEHTDLMNTMGERHMLQKQKEHISRNHRHVSSSSNLEGHETNACKNQKELIDEKSLTREGVVTGTPAIPLNCSSGKTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38106" e_stop="38293"/>
            <exon e_start="39315" e_stop="39416"/>
            <exon e_start="41064" e_stop="41500"/>
            <exon e_start="43027" e_stop="43417"/>
            <exon e_start="43561" e_stop="43852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.950" e_score="0.973"/>
          <exon-intron don_prob="0.980" acc_prob="0.949" e_score="0.882"/>
          <exon-intron don_prob="0.992" acc_prob="0.779" e_score="0.958"/>
          <exon-intron don_prob="0.970" acc_prob="0.926" e_score="0.954"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="38106" e_stop="38293" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.950">
            <gDNA_intron_boundary i_start="38294" i_stop="39314" i_length="1021"/>
          </intron>
          <exon e_serial="2" e_score="0.882">
            <gDNA_exon_boundary e_start="39315" e_stop="39416" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.949">
            <gDNA_intron_boundary i_start="39417" i_stop="41063" i_length="1647"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="41064" e_stop="41500" e_length="437"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.779">
            <gDNA_intron_boundary i_start="41501" i_stop="43026" i_length="1526"/>
          </intron>
          <exon e_serial="4" e_score="0.954">
            <gDNA_exon_boundary e_start="43027" e_stop="43417" e_length="391"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.926">
            <gDNA_intron_boundary i_start="43418" i_stop="43560" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="0.959">
            <gDNA_exon_boundary e_start="43561" e_stop="43852" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38106" stop="38293"/>
              <exon start="39315" stop="39416"/>
              <exon start="41064" stop="41447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41283" stop="41500"/>
              <exon start="43027" stop="43417"/>
              <exon start="43561" stop="43649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41283" stop="41500"/>
              <exon start="43027" stop="43294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43348" stop="43417"/>
              <exon start="43561" stop="43852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481822" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTGAGGTGTGAAGTGAGGCAAATGTAGAGCATGAGCTGCTGTTTTAGTTTATGTTATGTTCTTACCAACTAAGGAATCAAAGAATCTTTGTTGGGTTTTAGAGTTGTAGAGAAACAAGAAGAAGAAAAAAACACCTATAAGGGTTAAACTGGTCTTTTAGATTTTATCAATCAAAGGAAAAAAAG : ACTTGTAGAGAAAAAAGAAGAAAAGGAAGACCTAGAAGGATCAAACAACAGAGTGTCGTGGTCCCATTGGTCTTTTGGATTTTATCCATCAAATTAAAAAAG : ATAATGTGGTGCTGGTGCTGGAATCATCTAACAAGAACATTACAAAATTGTGCTGCTGGTTTACTTTGGCTTTTGTAGCTTGGTAGATCAGGCTGCAACTTGAAGTTTAGTTAGATAGTTGGACATGAATTTGCTGGTGAGAACATGCTCGAGCCAAGGGAAACCGACATTCCGACTTTATTTTTGGTCTTGGTTGTGCTTCCCCTGGTTTCTTATATTCTTCTAGGAAAATGGAATGAGGCAGCCAAAAAGAAAGAAAGAGTTGGTTTGCTGGCTCAACGGGCTGCTGAAGAAGCACATAAGACACAAACTATGTCTGCAGTAAGTATTACCCCTATCCCTCTTGTGCCTTTGCCAAGCAGTGCAACTCATCAGTGTGCAAGATGCCATAGTCCAGCCACAACTCGCTGCTCTCAATGCAAATCTGTTCGATATTG : CTCAGGGAAGTGTCAGATTCTCCATTGGAGACAGGTTCACAAGCTAGAGTGTCTTCAATTGGGTAATAACTGCAATAGCTCATCCTCTAAGCCTGCCTTGACTGATGAACTCCCGGGACGCATGTCATTTGATAGCTATGTTGAAGCGCAGTACAGCGACAACAACCTGAATCAGTTGTGGCTTGGCAAAACTTCTCCAGATGGGGTGACTGAAACACCCATTGTCACCCCAGTTGCCCCTATTACTGTTAGTGTGGCAACGAATACATCAGGATCTCCAAAAGTTGGGAGACGATCTGTAGACAAGAGAGTACATAAAGGCAACAGAGACATATTAAGAAGAGGGGACGGAACCATGTCTGAGAGTTCTGAACGAGCCTCTCAATCTAGG : TCAAGAGATGGTGATTCCATGCTTTCGGAACATGATAGCATCGCGGATGGGTTCATTAGTGAACATACTGATTTGATGAATACAATGGGAGAACGCCATATGTTACAAAAGCAGAAAGAACACATCTCAAGAAATCATCGTCATGTTTCAAGTTCATCGAATCTAGAAGGCCATGAAACAAATGCATGCAAGAATCAGAAGGAGCTGATTGATGAAAAAAGCCTTACACGAGAAGGCGTCGTTACCGGCACTCCGGCAATTCCATTAAACTGTTCTTCTGGAAAGACCTCTA</gDNA_template>
            <first_frame> V  L  R  C  E  V  R  Q  M  *  S  M  S  C  C  F  S  L  C  Y  V  L  T  N  *  G  I  K  E  S  L  L  G  F  R  V  V  E  K  Q  E  E  E  K  N  T  Y  K  G  *  T  G  L  L  D  F  I  N  Q  R  K  K  R :   L  V  E  K  K  E  E  K  E  D  L  E  G  S  N  N  R  V  S  W  S  H  W  S  F  G  F  Y  P  S  N  *  K  R :   *  C  G  A  G  A  G  I  I  *  Q  E  H  Y  K  I  V  L  L  V  Y  F  G  F  C  S  L  V  D  Q  A  A  T  *  S  L  V  R  *  L  D  M  N  L  L  V  R  T  C  S  S  Q  G  K  P  T  F  R  L  Y  F  W  S  W  L  C  F  P  W  F  L  I  F  F  *  E  N  G  M  R  Q  P  K  R  K  K  E  L  V  C  W  L  N  G  L  L  K  K  H  I  R  H  K  L  C  L  Q  *  V  L  P  L  S  L  L  C  L  C  Q  A  V  Q  L  I  S  V  Q  D  A  I  V  Q  P  Q  L  A  A  L  N  A  N  L  F  D  I   : A  Q  G  S  V  R  F  S  I  G  D  R  F  T  S  *  S  V  F  N  W  V  I  T  A  I  A  H  P  L  S  L  P  *  L  M  N  S  R  D  A  C  H  L  I  A  M  L  K  R  S  T  A  T  T  T  *  I  S  C  G  L  A  K  L  L  Q  M  G  *  L  K  H  P  L  S  P  Q  L  P  L  L  L  L  V  W  Q  R  I  H  Q  D  L  Q  K  L  G  D  D  L  *  T  R  E  Y  I  K  A  T  E  T  Y  *  E  E  G  T  E  P  C  L  R  V  L  N  E  P  L  N  L  G :   Q  E  M  V  I  P  C  F  R  N  M  I  A  S  R  M  G  S  L  V  N  I  L  I  *  *  I  Q  W  E  N  A  I  C  Y  K  S  R  K  N  T  S  Q  E  I  I  V  M  F  Q  V  H  R  I  *  K  A  M  K  Q  M  H  A  R  I  R  R  S  *  L  M  K  K  A  L  H  E  K  A  S  L  P  A  L  R  Q  F  H  *  T  V  L  L  E  R  P  L </first_frame>
            <second_frame>  F  *  G  V  K  *  G  K  C  R  A  *  A  A  V  L  V  Y  V  M  F  L  P  T  K  E  S  K  N  L  C  W  V  L  E  L  *  R  N  K  K  K  K  K  T  P  I  R  V  K  L  V  F  *  I  L  S  I  K  G  K  K   : D  L  *  R  K  K  K  K  R  K  T  *  K  D  Q  T  T  E  C  R  G  P  I  G  L  L  D  F  I  H  Q  I  K  K   : D  N  V  V  L  V  L  E  S  S  N  K  N  I  T  K  L  C  C  W  F  T  L  A  F  V  A  W  *  I  R  L  Q  L  E  V  *  L  D  S  W  T  *  I  C  W  *  E  H  A  R  A  K  G  N  R  H  S  D  F  I  F  G  L  G  C  A  S  P  G  F  L  Y  S  S  R  K  M  E  *  G  S  Q  K  E  R  K  S  W  F  A  G  S  T  G  C  *  R  S  T  *  D  T  N  Y  V  C  S  K  Y  Y  P  Y  P  S  C  A  F  A  K  Q  C  N  S  S  V  C  K  M  P  *  S  S  H  N  S  L  L  S  M  Q  I  C  S  I  L  :  L  R  E  V  S  D  S  P  L  E  T  G  S  Q  A  R  V  S  S  I  G  *  *  L  Q  *  L  I  L  *  A  C  L  D  *  *  T  P  G  T  H  V  I  *  *  L  C  *  S  A  V  Q  R  Q  Q  P  E  S  V  V  A  W  Q  N  F  S  R  W  G  D  *  N  T  H  C  H  P  S  C  P  Y  Y  C  *  C  G  N  E  Y  I  R  I  S  K  S  W  E  T  I  C  R  Q  E  S  T  *  R  Q  Q  R  H  I  K  K  R  G  R  N  H  V  *  E  F  *  T  S  L  S  I  *   : V  K  R  W  *  F  H  A  F  G  T  *  *  H  R  G  W  V  H  *  *  T  Y  *  F  D  E  Y  N  G  R  T  P  Y  V  T  K  A  E  R  T  H  L  K  K  S  S  S  C  F  K  F  I  E  S  R  R  P  *  N  K  C  M  Q  E  S  E  G  A  D  *  *  K  K  P  Y  T  R  R  R  R  Y  R  H  S  G  N  S  I  K  L  F  F  W  K  D  L   </second_frame>
            <third_frame>   F  E  V  *  S  E  A  N  V  E  H  E  L  L  F  *  F  M  L  C  S  Y  Q  L  R  N  Q  R  I  F  V  G  F  *  S  C  R  E  T  R  R  R  K  K  H  L  *  G  L  N  W  S  F  R  F  Y  Q  S  K  E  K  K  :  T  C  R  E  K  R  R  K  G  R  P  R  R  I  K  Q  Q  S  V  V  V  P  L  V  F  W  I  L  S  I  K  L  K  K  :  I  M  W  C  W  C  W  N  H  L  T  R  T  L  Q  N  C  A  A  G  L  L  W  L  L  *  L  G  R  S  G  C  N  L  K  F  S  *  I  V  G  H  E  F  A  G  E  N  M  L  E  P  R  E  T  D  I  P  T  L  F  L  V  L  V  V  L  P  L  V  S  Y  I  L  L  G  K  W  N  E  A  A  K  K  K  E  R  V  G  L  L  A  Q  R  A  A  E  E  A  H  K  T  Q  T  M  S  A  V  S  I  T  P  I  P  L  V  P  L  P  S  S  A  T  H  Q  C  A  R  C  H  S  P  A  T  T  R  C  S  Q  C  K  S  V  R  Y  C :   S  G  K  C  Q  I  L  H  W  R  Q  V  H  K  L  E  C  L  Q  L  G  N  N  C  N  S  S  S  S  K  P  A  L  T  D  E  L  P  G  R  M  S  F  D  S  Y  V  E  A  Q  Y  S  D  N  N  L  N  Q  L  W  L  G  K  T  S  P  D  G  V  T  E  T  P  I  V  T  P  V  A  P  I  T  V  S  V  A  T  N  T  S  G  S  P  K  V  G  R  R  S  V  D  K  R  V  H  K  G  N  R  D  I  L  R  R  G  D  G  T  M  S  E  S  S  E  R  A  S  Q  S  R  :  S  R  D  G  D  S  M  L  S  E  H  D  S  I  A  D  G  F  I  S  E  H  T  D  L  M  N  T  M  G  E  R  H  M  L  Q  K  Q  K  E  H  I  S  R  N  H  R  H  V  S  S  S  S  N  L  E  G  H  E  T  N  A  C  K  N  Q  K  E  L  I  D  E  K  S  L  T  R  E  G  V  V  T  G  T  P  A  I  P  L  N  C  S  S  G  K  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41178" stop="41500"/>
                    <exon start="43027" stop="43417"/>
                    <exon start="43561" stop="43851"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVGHEFAGENMLEPRETDIPTLFLVLVVLPLVSYILLGKWNEAAKKKERVGLLAQRAAEEAHKTQTMSAVSITPIPLVPLPSSATHQCARCHSPATTRCSQCKSVRYCSGKCQILHWRQVHKLECLQLGNNCNSSSSKPALTDELPGRMSFDSYVEAQYSDNNLNQLWLGKTSPDGVTETPIVTPVAPITVSVATNTSGSPKVGRRSVDKRVHKGNRDILRRGDGTMSESSERASQSRSRDGDSMLSEHDSIADGFISEHTDLMNTMGERHMLQKQKEHISRNHRHVSSSSNLEGHETNACKNQKELIDEKSLTREGVVTGTPAIPLNCSSGKTS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38249" stop="38293"/>
                    <exon start="39315" stop="39416"/>
                    <exon start="41064" stop="41141"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLNWSFRFYQSKEKKTCREKRRKGRPRRIKQQSVVVPLVFWILSIKLKKIMWCWCWNHLTRTLQNCAAGLLWLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="43977" PGL_stop="44875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43977" e_stop="43981"/>
            <exon e_start="44058" e_stop="44209"/>
            <exon e_start="44332" e_stop="44420"/>
            <exon e_start="44584" e_stop="44669"/>
            <exon e_start="44759" e_stop="44875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.796" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.651" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.745" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43977" e_stop="43981" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.796" acc_prob="0.839">
            <gDNA_intron_boundary i_start="43982" i_stop="44057" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44058" e_stop="44209" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.651">
            <gDNA_intron_boundary i_start="44210" i_stop="44331" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44332" e_stop="44420" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.883" acc_prob="0.922">
            <gDNA_intron_boundary i_start="44421" i_stop="44583" i_length="163"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44584" e_stop="44669" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.844" acc_prob="0.745">
            <gDNA_intron_boundary i_start="44670" i_stop="44758" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44759" e_stop="44875" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43977" stop="43981"/>
              <exon start="44058" stop="44209"/>
              <exon start="44332" stop="44420"/>
              <exon start="44584" stop="44669"/>
              <exon start="44759" stop="44875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAA : AAAATGCTAGAAGAAAGGATGCAGTCCCTCCACAAGCAGGCAGTGGTGTTGCAAACTTGGGAATTATGAGAATGTTTGGTCTGGCTAAATCATCAAAAGTTGTCGGACATCAATCATTAGAATCCAGGGCTGACAAACAAAAGAAACTAAAG : ATGCTGTTTCCTTATGAAGAGTTTGTGAAGTTATTTGAATACGAAGACTTCACTTTGTTGCCTAGAGGTCTCATAAATTGCGGGAATAG : TTGTTATGCCAATGCTGTCTTGCAGTGTCTGATGTGCACAAAGCCTTTAACAATCTACCTACTTCACAGATCACATTCTAGAACTT : ACTGCAGGAAAGATTGGTGCCTTGTGTGTGAACTTGAGCAACATGCGATGATGTTAAGAGAAAGTGGAGGTCCTCTGTCACCAAACAAGATTCTTTTGCATATGCGGAGCATTAATG</gDNA_template>
            <first_frame> V  K :   K  C  *  K  K  G  C  S  P  S  T  S  R  Q  W  C  C  K  L  G  N  Y  E  N  V  W  S  G  *  I  I  K  S  C  R  T  S  I  I  R  I  Q  G  *  Q  T  K  E  T  K   : D  A  V  S  L  *  R  V  C  E  V  I  *  I  R  R  L  H  F  V  A  *  R  S  H  K  L  R  E  *  :  L  L  C  Q  C  C  L  A  V  S  D  V  H  K  A  F  N  N  L  P  T  S  Q  I  T  F  *  N  L :   L  Q  E  R  L  V  P  C  V  *  T  *  A  T  C  D  D  V  K  R  K  W  R  S  S  V  T  K  Q  D  S  F  A  Y  A  E  H  *   </first_frame>
            <second_frame>  S   : K  N  A  R  R  K  D  A  V  P  P  Q  A  G  S  G  V  A  N  L  G  I  M  R  M  F  G  L  A  K  S  S  K  V  V  G  H  Q  S  L  E  S  R  A  D  K  Q  K  K  L  K  :  M  L  F  P  Y  E  E  F  V  K  L  F  E  Y  E  D  F  T  L  L  P  R  G  L  I  N  C  G  N  S :   C  Y  A  N  A  V  L  Q  C  L  M  C  T  K  P  L  T  I  Y  L  L  H  R  S  H  S  R  T   : Y  C  R  K  D  W  C  L  V  C  E  L  E  Q  H  A  M  M  L  R  E  S  G  G  P  L  S  P  N  K  I  L  L  H  M  R  S  I  N  </second_frame>
            <third_frame>   Q  :  K  M  L  E  E  R  M  Q  S  L  H  K  Q  A  V  V  L  Q  T  W  E  L  *  E  C  L  V  W  L  N  H  Q  K  L  S  D  I  N  H  *  N  P  G  L  T  N  K  R  N  *  R :   C  C  F  L  M  K  S  L  *  S  Y  L  N  T  K  T  S  L  C  C  L  E  V  S  *  I  A  G  I   : V  V  M  P  M  L  S  C  S  V  *  C  A  Q  S  L  *  Q  S  T  Y  F  T  D  H  I  L  E  L  :  T  A  G  K  I  G  A  L  C  V  N  L  S  N  M  R  *  C  *  E  K  V  E  V  L  C  H  Q  T  R  F  F  C  I  C  G  A  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43978" stop="43981"/>
                    <exon start="44058" stop="44209"/>
                    <exon start="44332" stop="44420"/>
                    <exon start="44584" stop="44669"/>
                    <exon start="44759" stop="44874"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKNARRKDAVPPQAGSGVANLGIMRMFGLAKSSKVVGHQSLESRADKQKKLKMLFPYEEFVKLFEYEDFTLLPRGLINCGNSCYANAVLQCLMCTKPLTIYLLHRSHSRTYCRKDWCLVCELEQHAMMLRESGGPLSPNKILLHMRSIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="46150" PGL_stop="48424"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47380" e_stop="47410"/>
            <exon e_start="47574" e_stop="48424"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.992" e_score="0.968"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="47380" e_stop="47410" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47411" i_stop="47573" i_length="163"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="47574" e_stop="48424" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47380" stop="47410"/>
              <exon start="47574" stop="48353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418516" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47595" stop="48223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47595" stop="48208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47595" stop="48063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47640" stop="47927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47822" stop="48095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47840" stop="48424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47926" stop="48361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48057" stop="48343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAGGAGCATATATCTTATTTTATAAGAG : ATCATCTCCACGGCCAGCAAGGAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAATCT</gDNA_template>
            <first_frame> R  K  E  H  I  S  Y  F  I  R   : D  H  L  H  G  Q  Q  G  R  L  A  E  D  K  F  L  E  L  S  S  T  A  H  Q  N  R  Q  R  L  L  G  Q  S  R  Q  K  R  S  I  F  M  L  V  W  I  L  I  *  I  I  G  Q  K  *  T  V  T  *  L  I  A  P  P  V  D  S  S  R  T  L  I  E  I  D  R  R  L  W  E  P  I  L  S  Q  *  L  Q  S  S  L  M  L  H  Q  V  I  G  P  S  L  Q  A  Q  M  K  H  H  L  L  L  R  V  P  D  T  L  L  V  L  L  T  M  E  M  Q  T  L  L  I  R  S  L  P  S  S  T  A  Y  V  D  Q  I  I  H  L  T  E  Q  W  R  V  V  C  F  Q  V  V  N  R  I  Q  D  S  F  Q  K  V  R  V  L  F  W  I  Q  L  L  G  L  A  Y  R  D  R  L  L  F  L  I  L  K  V  F  I  V  I  V  V  T  M  Y  M  *  N  M  V  V  S  L  D  M  N  K  L  T  I  H  I  M  C  S  F  L  K  F  Q  I  I  I  C  R  I  S  *  V  Q  A  V  L  L  F  C  *  S  I  F  Y  *  M  E  A  H  Q  S  F  S  S  S  M  E  Q  L  V  I  F  C  Y  F  A  V  V  N  M  L  A  V  A  N  Y  L  D  S  L  Q  S </first_frame>
            <second_frame>  G  R  S  I  Y  L  I  L  *  E  :  I  I  S  T  A  S  K  E  D  *  P  K  T  S  S  W  N  C  Q  A  L  P  T  K  I  D  K  D  F  *  A  R  A  D  K  S  G  A  S  L  C  W  C  G  S  L  Y  E  S  *  A  R  N  E  Q  *  H  N  *  L  H  L  R  W  T  R  Q  E  R  *  *  K  *  T  A  G  C  G  N  L  Y  *  V  N  D  C  R  V  L  *  C  Y  I  K  *  L  V  P  L  Y  K  L  R  *  S  I  I  Y  Y  *  E  Y  Q  I  L  F  *  Y  C  *  L  W  R  C  K  R  C  *  S  V  L  F  H  H  Q  Q  L  M  W  I  R  L  F  I  *  Q  N  S  G  V  *  Y  V  F  K  *  *  T  A  Y  K  I  L  F  R  K  *  G  F  C  F  G  F  N  C  W  D  *  H  T  E  T  G  Y  C  S  L  F  *  R  F  S  *  *  *  *  *  P  C  T  C  R  I  W  *  *  A  *  I  *  T  N  L  L  S  I  *  C  V  V  S  *  N  S  K  S  L  Y  V  E  L  A  R  Y  K  L  C  F  C  F  A  N  Q  Y  F  I  E  W  K  H  I  N  H  F  L  V  Q  W  N  N  W  S  F  F  V  I  L  Q  L  *  I  C  L  L  *  L  I  I  L  I  L  Y  N   </second_frame>
            <third_frame>   E  G  A  Y  I  L  F  Y  K  R :   S  S  P  R  P  A  R  K  I  S  R  R  Q  V  P  G  I  V  K  H  C  P  P  K  S  T  K  T  S  R  P  E  Q  T  K  A  E  H  L  Y  V  G  V  D  P  Y  M  N  H  R  P  E  M  N  S  D  I  I  D  C  T  S  G  G  L  V  K  N  A  N  R  N  R  P  P  V  V  G  T  Y  T  E  S  M  T  A  E  F  S  D  A  T  S  S  D  W  S  L  F  T  S  S  D  E  A  S  F  T  T  E  S  T  R  Y  S  F  S  T  V  D  Y  G  D  A  N  A  A  D  P  F  S  S  I  I  N  S  L  C  G  S  D  Y  S  S  N  R  T  V  A  C  S  M  F  S  S  S  K  P  H  T  R  F  F  S  E  S  K  G  S  V  L  D  S  T  A  G  T  S  I  P  R  Q  V  T  V  P  Y  S  E  G  F  H  S  D  S  S  N  H  V  H  V  E  Y  G  S  E  P  R  Y  E  Q  T  Y  Y  P  Y  N  V  *  F  L  E  I  P  N  H  Y  M  S  N  *  L  G  T  S  C  A  S  V  L  L  I  N  I  L  L  N  G  S  T  S  I  I  F  *  F  N  G  T  T  G  H  F  L  L  F  C  S  C  K  Y  A  C  C  S  *  L  S  *  F  F  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47382" stop="47410"/>
                    <exon start="47574" stop="48231"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGAYILFYKRSSPRPARKISRRQVPGIVKHCPPKSTKTSRPEQTKAEHLYVGVDPYMNHRPEMNSDIIDCTSGGLVKNANRNRPPVVGTYTESMTAEFSDATSSDWSLFTSSDEASFTTESTRYSFSTVDYGDANAADPFSSIINSLCGSDYSSNRTVACSMFSSSKPHTRFFSESKGSVLDSTAGTSIPRQVTVPYSEGFHSDSSNHVHVEYGSEPRYEQTYYPYNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46150" e_stop="46183"/>
            <exon e_start="47703" e_stop="48424"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46150" e_stop="46183" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46184" i_stop="47702" i_length="1519"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="47703" e_stop="48424" e_length="722"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46150" stop="46183"/>
              <exon start="47703" stop="48380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47822" stop="48095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47840" stop="48424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47926" stop="48361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48057" stop="48343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATACCTTAAATGCATCATTTTCTGGGCATTAC : GGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAATCT</gDNA_template>
            <first_frame> G  Y  L  K  C  I  I  F  W  A  L   : R  I  L  I  *  I  I  G  Q  K  *  T  V  T  *  L  I  A  P  P  V  D  S  S  R  T  L  I  E  I  D  R  R  L  W  E  P  I  L  S  Q  *  L  Q  S  S  L  M  L  H  Q  V  I  G  P  S  L  Q  A  Q  M  K  H  H  L  L  L  R  V  P  D  T  L  L  V  L  L  T  M  E  M  Q  T  L  L  I  R  S  L  P  S  S  T  A  Y  V  D  Q  I  I  H  L  T  E  Q  W  R  V  V  C  F  Q  V  V  N  R  I  Q  D  S  F  Q  K  V  R  V  L  F  W  I  Q  L  L  G  L  A  Y  R  D  R  L  L  F  L  I  L  K  V  F  I  V  I  V  V  T  M  Y  M  *  N  M  V  V  S  L  D  M  N  K  L  T  I  H  I  M  C  S  F  L  K  F  Q  I  I  I  C  R  I  S  *  V  Q  A  V  L  L  F  C  *  S  I  F  Y  *  M  E  A  H  Q  S  F  S  S  S  M  E  Q  L  V  I  F  C  Y  F  A  V  V  N  M  L  A  V  A  N  Y  L  D  S  L  Q  S </first_frame>
            <second_frame>  D  T  L  N  A  S  F  S  G  H  Y  :  G  S  L  Y  E  S  *  A  R  N  E  Q  *  H  N  *  L  H  L  R  W  T  R  Q  E  R  *  *  K  *  T  A  G  C  G  N  L  Y  *  V  N  D  C  R  V  L  *  C  Y  I  K  *  L  V  P  L  Y  K  L  R  *  S  I  I  Y  Y  *  E  Y  Q  I  L  F  *  Y  C  *  L  W  R  C  K  R  C  *  S  V  L  F  H  H  Q  Q  L  M  W  I  R  L  F  I  *  Q  N  S  G  V  *  Y  V  F  K  *  *  T  A  Y  K  I  L  F  R  K  *  G  F  C  F  G  F  N  C  W  D  *  H  T  E  T  G  Y  C  S  L  F  *  R  F  S  *  *  *  *  *  P  C  T  C  R  I  W  *  *  A  *  I  *  T  N  L  L  S  I  *  C  V  V  S  *  N  S  K  S  L  Y  V  E  L  A  R  Y  K  L  C  F  C  F  A  N  Q  Y  F  I  E  W  K  H  I  N  H  F  L  V  Q  W  N  N  W  S  F  F  V  I  L  Q  L  *  I  C  L  L  *  L  I  I  L  I  L  Y  N   </second_frame>
            <third_frame>   I  P  *  M  H  H  F  L  G  I  T :   D  P  Y  M  N  H  R  P  E  M  N  S  D  I  I  D  C  T  S  G  G  L  V  K  N  A  N  R  N  R  P  P  V  V  G  T  Y  T  E  S  M  T  A  E  F  S  D  A  T  S  S  D  W  S  L  F  T  S  S  D  E  A  S  F  T  T  E  S  T  R  Y  S  F  S  T  V  D  Y  G  D  A  N  A  A  D  P  F  S  S  I  I  N  S  L  C  G  S  D  Y  S  S  N  R  T  V  A  C  S  M  F  S  S  S  K  P  H  T  R  F  F  S  E  S  K  G  S  V  L  D  S  T  A  G  T  S  I  P  R  Q  V  T  V  P  Y  S  E  G  F  H  S  D  S  S  N  H  V  H  V  E  Y  G  S  E  P  R  Y  E  Q  T  Y  Y  P  Y  N  V  *  F  L  E  I  P  N  H  Y  M  S  N  *  L  G  T  S  C  A  S  V  L  L  I  N  I  L  L  N  G  S  T  S  I  I  F  *  F  N  G  T  T  G  H  F  L  L  F  C  S  C  K  Y  A  C  C  S  *  L  S  *  F  F  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46161" stop="46183"/>
                    <exon start="47703" stop="48231"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MHHFLGITDPYMNHRPEMNSDIIDCTSGGLVKNANRNRPPVVGTYTESMTAEFSDATSSDWSLFTSSDEASFTTESTRYSFSTVDYGDANAADPFSSIINSLCGSDYSSNRTVACSMFSSSKPHTRFFSESKGSVLDSTAGTSIPRQVTVPYSEGFHSDSSNHVHVEYGSEPRYEQTYYPYNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="49620" PGL_stop="48060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49603" e_stop="49320"/>
            <exon e_start="49231" e_stop="48650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.861" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49603" e_stop="49320" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.861" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="49231" e_stop="48650" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49603" stop="49320"/>
              <exon start="49231" stop="48774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49601" stop="49320"/>
              <exon start="49231" stop="48778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49590" stop="49320"/>
              <exon start="49231" stop="48683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49586" stop="49320"/>
              <exon start="49231" stop="49096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216767" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49585" stop="49320"/>
              <exon start="49231" stop="48692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49582" stop="49320"/>
              <exon start="49231" stop="48650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49320"/>
              <exon start="49231" stop="48820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49320"/>
              <exon start="49231" stop="49130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49536" stop="49320"/>
              <exon start="49231" stop="48715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49535" stop="49320"/>
              <exon start="49231" stop="48811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49447" stop="49320"/>
              <exon start="49231" stop="48651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49057" stop="48682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613413" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG : GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAACACCTCTGTG</gDNA_template>
            <first_frame> K  L  K  Q  Q  K  V  I  K  M  L  S  V  S  M  N  L  L  M  M  R  L  C  L  F  L  F  L  V  S  K  L  C  N  G  Y  S  T  K  L  N  F  Y  P  P  T  C  Q  R  I  E  C  P  N  Y  D  L  I  E  S  G  K  D  Y  E  I  R  R  Y  D  S  P  M  W  M  S  T  A  P  I  D  D  I  S  Y  V  S  A  T  R  T  G  F  L  R :   L  F  D  Y  I  Q  G  K  N  K  Y  H  E  T  V  K  M  T  A  P  V  I  I  Q  V  K  P  S  D  G  P  F  C  A  S  S  F  V  V  S  F  Y  V  P  K  K  N  Q  P  N  P  P  P  A  K  G  L  H  L  Q  K  W  G  D  T  Y  V  A  V  R  Q  F  S  G  F  I  A  D  D  D  L  P  R  E  A  A  A  L  S  A  S  I  A  G  T  N  W  A  A  A  I  D  K  S  H  A  A  D  N  T  T  L  Y  T  V  A  G  Y  N  S  P  F  E  F  K  N  R  V  N  E  I  W  F  T  F  D  L  E  K  A  L  A  I  *  E  A  A  F  V  T  T  Y  Q  R  I  V  D  K  S  L  V  I  L  Y  E  Q  N  A  T  L  Y  I  A  N  K  I  D  C  V  I  Q  S  D  S  E  S  L  V  V  K  T  P  L   </first_frame>
            <second_frame>  N  *  N  S  K  K  *  *  K  C  L  V  *  V  *  I  C  *  *  *  G  C  V  C  F  C  S  L  F  P  N  Y  A  M  V  T  Q  Q  S  *  I  S  I  L  Q  L  V  K  E  L  N  A  Q  I  M  I  *  L  N  L  E  K  T  M  K  F  V  V  T  I  P  L  C  G  C  L  L  L  L  L  M  I  F  H  M  F  P  P  P  E  L  V  S  S   : G  Y  L  I  T  F  K  G  R  I  S  T  M  R  Q  *  R  *  Q  L  Q  L  S  F  K  *  S  Q  V  M  D  L  F  V  L  L  H  L  L  *  V  F  M  Y  Q  R  R  T  S  Q  I  L  L  Q  L  K  A  F  I  S  R  N  G  G  T  L  T  S  R  S  G  N  S  V  D  L  *  L  M  M  T  F  Q  E  K  P  L  P  *  V  P  V  L  L  A  L  I  G  Q  Q  P  S  T  K  A  M  L  Q  T  I  Q  R  C  I  Q  W  R  D  T  T  P  H  L  S  S  R  T  E  L  M  R  Y  G  L  L  L  I  W  K  K  H  L  P  F  E  R  L  L  L  L  L  L  I  K  G  *  L  T  S  P  *  *  F  C  M  N  R  M  L  H  Y  I  L  Q  I  R  *  I  V  *  Y  N  L  I  L  R  V  W  W  L  K  H  L  C  </second_frame>
            <third_frame>   I  K  T  A  K  S  N  K  N  A  *  C  K  Y  E  S  V  D  D  E  A  V  F  V  S  V  P  C  F  Q  I  M  Q  W  L  L  N  K  V  E  F  L  S  S  N  L  S  K  N  *  M  P  K  L  *  F  D  *  I  W  K  R  L  *  N  S  S  L  R  F  P  Y  V  D  V  Y  C  S  Y  *  *  Y  F  I  C  F  R  H  Q  N  W  F  P  Q  :  A  I  *  L  H  S  R  E  E  *  V  P  *  D  S  K  D  D  S  S  S  Y  H  S  S  E  A  K  *  W  T  F  L  C  F  F  I  C  C  E  F  L  C  T  K  E  E  P  A  K  S  S  S  S  *  R  P  S  S  P  E  M  G  G  H  L  R  R  G  Q  A  I  Q  W  I  Y  S  *  *  *  P  S  K  R  S  R  C  P  E  C  Q  Y  C  W  H  *  L  G  S  S  H  R  Q  K  P  C  C  R  Q  Y  N  V  V  Y  S  G  G  I  Q  L  P  I  *  V  Q  E  Q  S  *  *  D  M  V  Y  F  *  F  G  K  S  T  C  H  L  R  G  C  F  C  Y  Y  L  S  K  D  S  *  Q  V  P  S  N  F  V  *  T  E  C  Y  I  I  Y  C  K  *  D  R  L  C  N  T  I  *  F  *  E  F  G  G  *  N  T  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49603" stop="49320"/>
                    <exon start="49231" stop="48799"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKQQKVIKMLSVSMNLLMMRLCLFLFLVSKLCNGYSTKLNFYPPTCQRIECPNYDLIESGKDYEIRRYDSPMWMSTAPIDDISYVSATRTGFLRLFDYIQGKNKYHETVKMTAPVIIQVKPSDGPFCASSFVVSFYVPKKNQPNPPPAKGLHLQKWGDTYVAVRQFSGFIADDDLPREAAALSASIAGTNWAAAIDKSHAADNTTLYTVAGYNSPFEFKNRVNEIWFTFDLEKALAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49620" e_stop="49320"/>
            <exon e_start="49231" e_stop="48675"/>
            <exon e_start="48294" e_stop="48285"/>
            <exon e_start="48136" e_stop="48122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.861" acc_prob="0.996" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.128" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.614" e_score="0.600"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="49620" e_stop="49320" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.861" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49231" e_stop="48675" e_length="557"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.128">
            <gDNA_intron_boundary i_start="48674" i_stop="48295" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="48294" e_stop="48285" e_length="10"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.614">
            <gDNA_intron_boundary i_start="48284" i_stop="48137" i_length="148"/>
          </intron>
          <exon e_serial="4" e_score="0.600">
            <gDNA_exon_boundary e_start="48136" e_stop="48122" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49620" stop="49320"/>
              <exon start="49231" stop="48675"/>
              <exon start="48294" stop="48285"/>
              <exon start="48136" stop="48122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49603" stop="49320"/>
              <exon start="49231" stop="48774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49601" stop="49320"/>
              <exon start="49231" stop="48778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49590" stop="49320"/>
              <exon start="49231" stop="48683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49586" stop="49320"/>
              <exon start="49231" stop="49096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216767" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49585" stop="49320"/>
              <exon start="49231" stop="48692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49320"/>
              <exon start="49231" stop="48820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49320"/>
              <exon start="49231" stop="49130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49536" stop="49320"/>
              <exon start="49231" stop="48715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49535" stop="49320"/>
              <exon start="49231" stop="48811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49057" stop="48682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613413" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATTTCATTGAGACAAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG : GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGA : CAAAACAGAA : AATAAGGAACAGTAA</gDNA_template>
            <first_frame> Q  N  F  I  E  T  N  *  N  S  K  K  *  *  K  C  L  V  *  V  *  I  C  *  *  *  G  C  V  C  F  C  S  L  F  P  N  Y  A  M  V  T  Q  Q  S  *  I  S  I  L  Q  L  V  K  E  L  N  A  Q  I  M  I  *  L  N  L  E  K  T  M  K  F  V  V  T  I  P  L  C  G  C  L  L  L  L  L  M  I  F  H  M  F  P  P  P  E  L  V  S  S   : G  Y  L  I  T  F  K  G  R  I  S  T  M  R  Q  *  R  *  Q  L  Q  L  S  F  K  *  S  Q  V  M  D  L  F  V  L  L  H  L  L  *  V  F  M  Y  Q  R  R  T  S  Q  I  L  L  Q  L  K  A  F  I  S  R  N  G  G  T  L  T  S  R  S  G  N  S  V  D  L  *  L  M  M  T  F  Q  E  K  P  L  P  *  V  P  V  L  L  A  L  I  G  Q  Q  P  S  T  K  A  M  L  Q  T  I  Q  R  C  I  Q  W  R  D  T  T  P  H  L  S  S  R  T  E  L  M  R  Y  G  L  L  L  I  W  K  K  H  L  P  F  E  R  L  L  L  L  L  L  I  K  G  *  L  T  S  P  *  *  F  C  M  N  R  M  L  H  Y  I  L  Q  I  R  *  I  V  *  Y  N  L  I  L  R  :  Q  N  R   : K  *  G  T  V  </first_frame>
            <second_frame>  K  I  S  L  R  Q  I  K  T  A  K  S  N  K  N  A  *  C  K  Y  E  S  V  D  D  E  A  V  F  V  S  V  P  C  F  Q  I  M  Q  W  L  L  N  K  V  E  F  L  S  S  N  L  S  K  N  *  M  P  K  L  *  F  D  *  I  W  K  R  L  *  N  S  S  L  R  F  P  Y  V  D  V  Y  C  S  Y  *  *  Y  F  I  C  F  R  H  Q  N  W  F  P  Q  :  A  I  *  L  H  S  R  E  E  *  V  P  *  D  S  K  D  D  S  S  S  Y  H  S  S  E  A  K  *  W  T  F  L  C  F  F  I  C  C  E  F  L  C  T  K  E  E  P  A  K  S  S  S  S  *  R  P  S  S  P  E  M  G  G  H  L  R  R  G  Q  A  I  Q  W  I  Y  S  *  *  *  P  S  K  R  S  R  C  P  E  C  Q  Y  C  W  H  *  L  G  S  S  H  R  Q  K  P  C  C  R  Q  Y  N  V  V  Y  S  G  G  I  Q  L  P  I  *  V  Q  E  Q  S  *  *  D  M  V  Y  F  *  F  G  K  S  T  C  H  L  R  G  C  F  C  Y  Y  L  S  K  D  S  *  Q  V  P  S  N  F  V  *  T  E  C  Y  I  I  Y  C  K  *  D  R  L  C  N  T  I  *  F  *  D :   K  T  E  :  N  K  E  Q  * </second_frame>
            <third_frame>   K  F  H  *  D  K  L  K  Q  Q  K  V  I  K  M  L  S  V  S  M  N  L  L  M  M  R  L  C  L  F  L  F  L  V  S  K  L  C  N  G  Y  S  T  K  L  N  F  Y  P  P  T  C  Q  R  I  E  C  P  N  Y  D  L  I  E  S  G  K  D  Y  E  I  R  R  Y  D  S  P  M  W  M  S  T  A  P  I  D  D  I  S  Y  V  S  A  T  R  T  G  F  L  R :   L  F  D  Y  I  Q  G  K  N  K  Y  H  E  T  V  K  M  T  A  P  V  I  I  Q  V  K  P  S  D  G  P  F  C  A  S  S  F  V  V  S  F  Y  V  P  K  K  N  Q  P  N  P  P  P  A  K  G  L  H  L  Q  K  W  G  D  T  Y  V  A  V  R  Q  F  S  G  F  I  A  D  D  D  L  P  R  E  A  A  A  L  S  A  S  I  A  G  T  N  W  A  A  A  I  D  K  S  H  A  A  D  N  T  T  L  Y  T  V  A  G  Y  N  S  P  F  E  F  K  N  R  V  N  E  I  W  F  T  F  D  L  E  K  A  L  A  I  *  E  A  A  F  V  T  T  Y  Q  R  I  V  D  K  S  L  V  I  L  Y  E  Q  N  A  T  L  Y  I  A  N  K  I  D  C  V  I  Q  S  D  S  E   : T  K  Q  K :   I  R  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49606" stop="49320"/>
                    <exon start="49231" stop="48799"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKLKQQKVIKMLSVSMNLLMMRLCLFLFLVSKLCNGYSTKLNFYPPTCQRIECPNYDLIESGKDYEIRRYDSPMWMSTAPIDDISYVSATRTGFLRLFDYIQGKNKYHETVKMTAPVIIQVKPSDGPFCASSFVVSFYVPKKNQPNPPPAKGLHLQKWGDTYVAVRQFSGFIADDDLPREAAALSASIAGTNWAAAIDKSHAADNTTLYTVAGYNSPFEFKNRVNEIWFTFDLEKALAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="49603" e_stop="49320"/>
            <exon e_start="49231" e_stop="48689"/>
            <exon e_start="48294" e_stop="48285"/>
            <exon e_start="48136" e_stop="48132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.861" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.128" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.614" e_score="0.700"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49603" e_stop="49320" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.861" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49231" e_stop="48689" e_length="543"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.128">
            <gDNA_intron_boundary i_start="48688" i_stop="48295" i_length="394"/>
          </intron>
          <exon e_serial="3" e_score="0.700">
            <gDNA_exon_boundary e_start="48294" e_stop="48285" e_length="10"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.614">
            <gDNA_intron_boundary i_start="48284" i_stop="48137" i_length="148"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="48136" e_stop="48132" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49603" stop="49320"/>
              <exon start="49231" stop="48774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49601" stop="49320"/>
              <exon start="49231" stop="48778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49586" stop="49320"/>
              <exon start="49231" stop="49096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216767" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49585" stop="49320"/>
              <exon start="49231" stop="48692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49320"/>
              <exon start="49231" stop="48820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49320"/>
              <exon start="49231" stop="49130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49536" stop="49320"/>
              <exon start="49231" stop="48715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49535" stop="49320"/>
              <exon start="49231" stop="48811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49058" stop="48689"/>
              <exon start="48294" stop="48285"/>
              <exon start="48136" stop="48132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG : GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACA : CAAAACAGAA : AATAA</gDNA_template>
            <first_frame> K  L  K  Q  Q  K  V  I  K  M  L  S  V  S  M  N  L  L  M  M  R  L  C  L  F  L  F  L  V  S  K  L  C  N  G  Y  S  T  K  L  N  F  Y  P  P  T  C  Q  R  I  E  C  P  N  Y  D  L  I  E  S  G  K  D  Y  E  I  R  R  Y  D  S  P  M  W  M  S  T  A  P  I  D  D  I  S  Y  V  S  A  T  R  T  G  F  L  R :   L  F  D  Y  I  Q  G  K  N  K  Y  H  E  T  V  K  M  T  A  P  V  I  I  Q  V  K  P  S  D  G  P  F  C  A  S  S  F  V  V  S  F  Y  V  P  K  K  N  Q  P  N  P  P  P  A  K  G  L  H  L  Q  K  W  G  D  T  Y  V  A  V  R  Q  F  S  G  F  I  A  D  D  D  L  P  R  E  A  A  A  L  S  A  S  I  A  G  T  N  W  A  A  A  I  D  K  S  H  A  A  D  N  T  T  L  Y  T  V  A  G  Y  N  S  P  F  E  F  K  N  R  V  N  E  I  W  F  T  F  D  L  E  K  A  L  A  I  *  E  A  A  F  V  T  T  Y  Q  R  I  V  D  K  S  L  V  I  L  Y  E  Q  N  A  T  L  Y  I  A  N  K  I  D  C  V  I  H :   K  T  E  :  N   </first_frame>
            <second_frame>  N  *  N  S  K  K  *  *  K  C  L  V  *  V  *  I  C  *  *  *  G  C  V  C  F  C  S  L  F  P  N  Y  A  M  V  T  Q  Q  S  *  I  S  I  L  Q  L  V  K  E  L  N  A  Q  I  M  I  *  L  N  L  E  K  T  M  K  F  V  V  T  I  P  L  C  G  C  L  L  L  L  L  M  I  F  H  M  F  P  P  P  E  L  V  S  S   : G  Y  L  I  T  F  K  G  R  I  S  T  M  R  Q  *  R  *  Q  L  Q  L  S  F  K  *  S  Q  V  M  D  L  F  V  L  L  H  L  L  *  V  F  M  Y  Q  R  R  T  S  Q  I  L  L  Q  L  K  A  F  I  S  R  N  G  G  T  L  T  S  R  S  G  N  S  V  D  L  *  L  M  M  T  F  Q  E  K  P  L  P  *  V  P  V  L  L  A  L  I  G  Q  Q  P  S  T  K  A  M  L  Q  T  I  Q  R  C  I  Q  W  R  D  T  T  P  H  L  S  S  R  T  E  L  M  R  Y  G  L  L  L  I  W  K  K  H  L  P  F  E  R  L  L  L  L  L  L  I  K  G  *  L  T  S  P  *  *  F  C  M  N  R  M  L  H  Y  I  L  Q  I  R  *  I  V  *  Y   : T  K  Q  K :   I  </second_frame>
            <third_frame>   I  K  T  A  K  S  N  K  N  A  *  C  K  Y  E  S  V  D  D  E  A  V  F  V  S  V  P  C  F  Q  I  M  Q  W  L  L  N  K  V  E  F  L  S  S  N  L  S  K  N  *  M  P  K  L  *  F  D  *  I  W  K  R  L  *  N  S  S  L  R  F  P  Y  V  D  V  Y  C  S  Y  *  *  Y  F  I  C  F  R  H  Q  N  W  F  P  Q  :  A  I  *  L  H  S  R  E  E  *  V  P  *  D  S  K  D  D  S  S  S  Y  H  S  S  E  A  K  *  W  T  F  L  C  F  F  I  C  C  E  F  L  C  T  K  E  E  P  A  K  S  S  S  S  *  R  P  S  S  P  E  M  G  G  H  L  R  R  G  Q  A  I  Q  W  I  Y  S  *  *  *  P  S  K  R  S  R  C  P  E  C  Q  Y  C  W  H  *  L  G  S  S  H  R  Q  K  P  C  C  R  Q  Y  N  V  V  Y  S  G  G  I  Q  L  P  I  *  V  Q  E  Q  S  *  *  D  M  V  Y  F  *  F  G  K  S  T  C  H  L  R  G  C  F  C  Y  Y  L  S  K  D  S  *  Q  V  P  S  N  F  V  *  T  E  C  Y  I  I  Y  C  K  *  D  R  L  C  N  T  :  Q  N  R   : K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49603" stop="49320"/>
                    <exon start="49231" stop="48799"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKQQKVIKMLSVSMNLLMMRLCLFLFLVSKLCNGYSTKLNFYPPTCQRIECPNYDLIESGKDYEIRRYDSPMWMSTAPIDDISYVSATRTGFLRLFDYIQGKNKYHETVKMTAPVIIQVKPSDGPFCASSFVVSFYVPKKNQPNPPPAKGLHLQKWGDTYVAVRQFSGFIADDDLPREAAALSASIAGTNWAAAIDKSHAADNTTLYTVAGYNSPFEFKNRVNEIWFTFDLEKALAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="49580" e_stop="49320"/>
            <exon e_start="49231" e_stop="49117"/>
            <exon e_start="48352" e_stop="48060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.861" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49580" e_stop="49320" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.861" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49319" i_stop="49232" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="49231" e_stop="49117" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49116" i_stop="48353" i_length="764"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="48352" e_stop="48060" e_length="293"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49580" stop="49320"/>
              <exon start="49231" stop="49130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49138" stop="49117"/>
              <exon start="48352" stop="48060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624030" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG : GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTT : TTGTTCCATTGAACTAGAAAATGATTGATGTGCTTCCATTCAATAAAATATTGATTAGCAAAACAGAAGCACAGCTTGTACCTAGCTAATTCGACATATAATGATTTGGAATTTCAAGAAACTACACATTATATGGATAGTAAGTTTGTTCATATCTAGGCTCACTACCATATTCTACATGTACATGGTTACTACTATCACTATGAAAACCTTCAGAATAAGGAACAGTAACCTGTCTCGGTATGCTAGTCCCAGCAGTTGAATCCAAAACAGAACCCTTACTTTCTGAAAAG</gDNA_template>
            <first_frame> K  N  A  *  C  K  Y  E  S  V  D  D  E  A  V  F  V  S  V  P  C  F  Q  I  M  Q  W  L  L  N  K  V  E  F  L  S  S  N  L  S  K  N  *  M  P  K  L  *  F  D  *  I  W  K  R  L  *  N  S  S  L  R  F  P  Y  V  D  V  Y  C  S  Y  *  *  Y  F  I  C  F  R  H  Q  N  W  F  P  Q  :  A  I  *  L  H  S  R  E  E  *  V  P  *  D  S  K  D  D  S  S  S  Y  H  S  S  E  A  K  *  W  T  F  L  C  F  F  I  C   : F  V  P  L  N  *  K  M  I  D  V  L  P  F  N  K  I  L  I  S  K  T  E  A  Q  L  V  P  S  *  F  D  I  *  *  F  G  I  S  R  N  Y  T  L  Y  G  *  *  V  C  S  Y  L  G  S  L  P  Y  S  T  C  T  W  L  L  L  S  L  *  K  P  S  E  *  G  T  V  T  C  L  G  M  L  V  P  A  V  E  S  K  T  E  P  L  L  S  E  K </first_frame>
            <second_frame>  K  M  L  S  V  S  M  N  L  L  M  M  R  L  C  L  F  L  F  L  V  S  K  L  C  N  G  Y  S  T  K  L  N  F  Y  P  P  T  C  Q  R  I  E  C  P  N  Y  D  L  I  E  S  G  K  D  Y  E  I  R  R  Y  D  S  P  M  W  M  S  T  A  P  I  D  D  I  S  Y  V  S  A  T  R  T  G  F  L  R :   L  F  D  Y  I  Q  G  K  N  K  Y  H  E  T  V  K  M  T  A  P  V  I  I  Q  V  K  P  S  D  G  P  F  C  A  S  S  F  V  :  L  F  H  *  T  R  K  *  L  M  C  F  H  S  I  K  Y  *  L  A  K  Q  K  H  S  L  Y  L  A  N  S  T  Y  N  D  L  E  F  Q  E  T  T  H  Y  M  D  S  K  F  V  H  I  *  A  H  Y  H  I  L  H  V  H  G  Y  Y  Y  H  Y  E  N  L  Q  N  K  E  Q  *  P  V  S  V  C  *  S  Q  Q  L  N  P  K  Q  N  P  Y  F  L  K   </second_frame>
            <third_frame>   K  C  L  V  *  V  *  I  C  *  *  *  G  C  V  C  F  C  S  L  F  P  N  Y  A  M  V  T  Q  Q  S  *  I  S  I  L  Q  L  V  K  E  L  N  A  Q  I  M  I  *  L  N  L  E  K  T  M  K  F  V  V  T  I  P  L  C  G  C  L  L  L  L  L  M  I  F  H  M  F  P  P  P  E  L  V  S  S   : G  Y  L  I  T  F  K  G  R  I  S  T  M  R  Q  *  R  *  Q  L  Q  L  S  F  K  *  S  Q  V  M  D  L  F  V  L  L  H  L  F :   C  S  I  E  L  E  N  D  *  C  A  S  I  Q  *  N  I  D  *  Q  N  R  S  T  A  C  T  *  L  I  R  H  I  M  I  W  N  F  K  K  L  H  I  I  W  I  V  S  L  F  I  S  R  L  T  T  I  F  Y  M  Y  M  V  T  T  I  T  M  K  T  F  R  I  R  N  S  N  L  S  R  Y  A  S  P  S  S  *  I  Q  N  R  T  L  T  F  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49579" stop="49320"/>
                    <exon start="49231" stop="49117"/>
                    <exon start="48352" stop="48341"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMLSVSMNLLMMRLCLFLFLVSKLCNGYSTKLNFYPPTCQRIECPNYDLIESGKDYEIRRYDSPMWMSTAPIDDISYVSATRTGFLRLFDYIQGKNKYHETVKMTAPVIIQVKPSDGPFCASSFVLFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="52757" PGL_stop="51950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52757" e_stop="52502"/>
            <exon e_start="52405" e_stop="51950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52757" e_stop="52502" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52501" i_stop="52406" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="52405" e_stop="51950" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52757" stop="52502"/>
              <exon start="52405" stop="51950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52755" stop="52502"/>
              <exon start="52405" stop="52165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52755" stop="52502"/>
              <exon start="52405" stop="52234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52754" stop="52502"/>
              <exon start="52405" stop="51993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52752" stop="52502"/>
              <exon start="52405" stop="52110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52750" stop="52502"/>
              <exon start="52405" stop="52008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG : GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTATGGACACTGCAATTGACATTTGAGAGGCAACAAAGTTTACTAT</gDNA_template>
            <first_frame> E  R  N  T  H  *  *  K  *  I  L  *  *  S  S  C  C  F  F  S  S  L  F  P  M  D  I  Q  Q  N  *  I  H  I  L  Q  L  V  K  K  L  N  A  Q  I  M  M  *  L  N  L  E  K  T  M  K  F  V  V  T  I  P  L  C  G  C  L  L  N  Q  L  M  I  R  H  L  F  P  P  P  E  S  V  S  P   : G  Y  L  C  I  F  K  E  R  T  I  S  M  R  K  W  I  *  Q  H  Q  L  *  H  K  L  S  Q  V  M  D  H  Y  V  P  P  H  L  L  *  V  L  T  Y  Q  R  R  I  S  Q  I  L  L  Q  L  K  A  Y  I  P  K  N  G  T  K  V  V  M  P  R  S  G  N  S  V  D  L  L  R  M  V  I  F  R  N  K  L  L  P  L  L  P  A  S  L  T  L  N  G  Q  Q  L  S  K  K  A  G  V  K  I  I  V  R  F  I  Q  L  H  N  T  T  L  P  L  S  S  G  L  E  S  M  R  C  G  L  L  L  L  W  T  L  Q  L  T  F  E  R  Q  Q  S  L  L  </first_frame>
            <second_frame>  K  E  I  L  T  S  K  N  E  F  F  D  D  Q  V  V  V  F  S  R  P  Y  F  Q  W  I  F  N  K  I  R  F  I  S  S  N  L  *  K  N  *  M  P  K  L  *  C  D  *  I  W  K  R  L  *  N  S  S  L  Q  F  P  Y  V  D  V  Y  *  T  N  *  *  Y  V  I  C  F  R  H  P  N  R  F  H  Q  :  V  I  Y  V  Y  S  R  K  E  R  S  A  *  E  N  G  Y  D  S  T  S  Y  D  T  S  *  A  K  *  W  T  I  M  F  H  L  I  C  C  E  F  *  R  T  K  E  E  S  A  K  S  S  F  S  *  R  P  T  S  P  K  M  E  P  K  *  L  C  R  G  Q  A  I  Q  W  I  C  Y  G  W  *  Y  S  E  T  S  C  C  P  Y  C  Q  H  R  *  H  *  M  G  S  S  Y  R  K  K  Q  E  *  R  *  *  Y  D  L  Y  S  C  T  I  Q  L  S  L  *  V  Q  G  *  S  Q  *  D  V  V  Y  F  C  Y  G  H  C  N  *  H  L  R  G  N  K  V  Y  Y </second_frame>
            <third_frame>   K  K  Y  S  L  V  K  M  N  S  L  M  I  K  L  L  F  F  L  V  L  I  S  N  G  Y  S  T  K  L  D  S  Y  P  P  T  C  K  K  I  E  C  P  N  Y  D  V  I  E  S  G  K  D  Y  E  I  R  R  Y  N  S  P  M  W  M  S  T  E  P  I  D  D  T  S  F  V  S  A  T  R  I  G  F  T  R :   L  F  M  Y  I  Q  G  K  N  D  Q  H  E  K  M  D  M  T  A  P  V  M  T  Q  V  K  P  S  D  G  P  L  C  S  T  S  F  V  V  S  F  N  V  P  K  K  N  Q  P  N  P  P  S  A  E  G  L  H  P  Q  K  W  N  Q  S  S  Y  A  A  V  R  Q  F  S  G  F  V  T  D  G  D  I  P  K  Q  A  A  A  L  T  A  S  I  A  D  T  K  W  A  A  A  I  E  K  S  R  S  K  D  N  S  T  I  Y  T  V  A  Q  Y  N  S  P  F  E  F  R  A  R  V  N  E  M  W  F  T  F  V  M  D  T  A  I  D  I  *  E  A  T  K  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52755" stop="52502"/>
                    <exon start="52405" stop="51970"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKYSLVKMNSLMIKLLFFLVLISNGYSTKLDSYPPTCKKIECPNYDVIESGKDYEIRRYNSPMWMSTEPIDDTSFVSATRIGFTRLFMYIQGKNDQHEKMDMTAPVMTQVKPSDGPLCSTSFVVSFNVPKKNQPNPPSAEGLHPQKWNQSSYAAVRQFSGFVTDGDIPKQAAALTASIADTKWAAAIEKSRSKDNSTIYTVAQYNSPFEFRARVNEMWFTFVMDTAIDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="72616" PGL_stop="73397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72616" e_stop="73397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="72616" e_stop="73397" e_length="782"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72616" stop="73397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72617" stop="73224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACAGTGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAGGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</gDNA_template>
            <first_frame> E  T  V  I  G  G  A  D  T  V  R  E  G  C  C  W  G  G  G  I  D  G  G  G  G  C  G  G  C  G  G  G  *  L  K  F  L  N  N  Y  T  L  D  I  K  F  D  C  *  R  R  K  R  V  I  L  C  V  Y  *  V  A  D  Y  V  C  Y  T  K  H  L  *  I  K  K  *  T  S  Q  F  K  Y  *  S  I  *  T  S  L  I  *  N  V  M  V  Q  K  D  V  L  K  F  S  I  W  V  L  V  L  G  T  L  M  F  F  Y  L  K  V  K  *  F  L  R  I  S  G  Y  F  D  *  *  Q  R  V  A  R  T  V  N  I  K  L  D  T  C  G  L  S  N  R  R  Y  I  L  D  H  I  L  E  L  *  R  V  F  R  K  S  R  K  M  Y  H  I  H  T  S  *  S  V  R  T  F  *  P  F  *  C  N  Y  E  P  S  S  V  C  T  K  A  V  S  L  H  T  R  M  I  C  C  L  K  E  L  V  L  I  K  L  R  S  S  C  Y  K  P  Y  L  L  L  H  H  L  A  S  P  R  C  A  A  *  C  R  V  L  F  C  L  L  *  G  Y  M  V  S  L  A  S  C  P  S   </first_frame>
            <second_frame>  R  Q  *  L  V  A  L  I  R  L  G  R  V  V  V  G  V  V  A  L  M  A  E  V  V  A  V  D  V  E  V  V  D  L  S  F  *  I  I  I  H  *  T  *  S  S  I  V  K  G  E  N  V  *  F  Y  V  F  I  K  L  P  I  T  Y  V  T  Q  N  T  Y  E  L  K  N  E  P  H  N  S  S  T  R  V  F  K  H  L  *  S  K  M  L  W  F  R  K  M  C  *  S  S  Q  F  G  F  W  C  W  V  L  *  C  F  F  T  *  K  L  S  D  F  *  E  F  Q  D  I  L  I  D  N  R  E  L  L  G  R  *  I  L  S  W  I  L  V  D  Y  Q  I  E  D  T  S  W  I  I  F  L  S  C  N  E  C  S  E  S  L  G  K  C  T  T  S  I  R  A  E  V  L  E  H  F  S  P  F  S  A  T  M  S  H  L  V  Y  V  L  R  L  F  H  C  I  Q  G  *  F  V  V  *  K  S  *  Y  L  S  S  *  G  R  A  V  I  N  L  T  C  Y  C  I  T  S  P  V  L  D  V  L  L  S  V  E  F  C  F  V  C  F  E  D  I  W  *  A  *  L  H  A  L  R  </second_frame>
            <third_frame>   D  S  D  W  W  R  *  Y  G  *  G  G  L  L  L  G  W  W  H  *  W  R  R  W  L  R  W  M  W  R  W  L  T  *  V  S  K  *  L  Y  I  R  H  K  V  R  L  L  K  E  K  T  C  N  F  M  C  L  L  S  C  R  L  R  M  L  H  K  T  P  M  N  *  K  M  N  L  T  I  Q  V  L  E  Y  L  N  I  S  N  L  K  C  Y  G  S  E  R  C  V  E  V  L  N  L  G  F  G  A  G  Y  F  N  V  F  L  L  K  S  *  V  I  F  K  N  F  R  I  F  *  L  I  T  E  S  C  S  D  G  K  Y  *  A  G  Y  L  W  I  I  K  *  K  I  H  L  G  S  Y  S  *  A  V  T  S  V  Q  K  V  *  E  N  V  P  H  P  Y  E  L  K  C  *  N  I  L  A  L  L  V  Q  L  *  A  I  *  C  M  Y  *  G  C  F  I  A  Y  K  D  D  L  L  F  E  R  V  S  T  Y  Q  A  K  V  E  L  L  *  T  L  P  V  T  A  S  P  R  Q  S  *  M  C  C  L  V  *  S  S  V  L  F  A  L  R  I  Y  G  K  P  S  F  M  P  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73034" stop="73234"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSWILVDYQIEDTSWIIFLSCNECSESLGKCTTSIRAEVLEHFSPFSATMSHLVYVLRLFHCIQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="73589" PGL_stop="74428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73589" e_stop="73782"/>
            <exon e_start="73932" e_stop="74428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73589" e_stop="73782" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="73783" i_stop="73931" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73932" e_stop="74428" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73589" stop="73782"/>
              <exon start="73932" stop="74428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544067" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAG : GTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTT</gDNA_template>
            <first_frame> F  F  L  C  Y  Y  *  T  S  Y  N  W  L  A  A  N  F  S  F  K  V  T  L  L  C  R  R  D  T  Y  P  S  Y  P  L  Q  L  L  I  *  T  I  R  *  P  N  Y  W  L  *  V  P  S  W  M  A  P  S  N  M  K  S  M  E  R :   F  C  C  F  E  V  C  G  W  T  Y  V  R  S  L  S  A  V  L  R  H  P  R  N  N  H  L  Q  V  K  V  I  T  T  S  V  T  R  Q  I  G  F  S  A  *  I  L  H  S  G  V  L  L  K  E  R  I  D  S  C  T  W  R  *  S  T  Y  R  E  C  Y  S  K  K  Q  S  I  Q  *  L  N  S  Y  C  I  C  F  *  C  S  V  L  V  I  L  L  C  N  M  M  F  C  I  H  Q  H  E  L  W  C  S  T  L  N  Q  R  T  R  I  R  A  S  G  M  E  K  I  L  L  R  K  P  L  L  N  R  S  C  T  V  R  F  G  F  N  R  S  S  N  V  G  S  *  H  W  M  G  K  P  K  K  K  T  *  C  </first_frame>
            <second_frame>  F  F  Y  V  I  I  E  R  H  T  T  G  *  L  L  T  L  V  S  K  *  H  C  C  A  E  G  I  L  I  P  P  I  L  Y  S  C  *  Y  K  Q  F  G  D  Q  T  I  G  F  R  C  R  V  G  W  P  H  Q  I  *  N  P  W  K   : G  F  A  A  L  R  C  V  D  G  H  M  L  G  L  Y  Q  P  S  *  G  I  L  E  T  T  T  C  R  *  K  *  S  R  L  L  *  Q  G  K  L  V  S  Q  H  R  F  C  I  R  V  Y  C  *  K  R  E  S  T  L  V  H  G  G  E  A  H  I  G  S  V  T  A  R  N  N  Q  Y  S  S  *  I  P  T  V  F  V  F  D  V  L  F  W  L  S  F  C  V  T  *  C  F  V  F  T  N  M  N  C  G  A  P  P  L  T  R  G  L  G  F  E  L  P  V  W  R  K  F  C  *  E  S  H  S  *  I  G  H  A  L  Y  D  L  D  S  I  G  A  P  T  W  A  P  D  T  G  W  E  N  Q  K  K  K  H  D  V </second_frame>
            <third_frame>   F  F  M  L  L  L  N  V  I  Q  L  V  S  C  *  L  *  F  Q  S  D  I  V  V  Q  K  G  Y  L  S  L  L  S  F  T  V  V  D  I  N  N  S  V  T  K  L  L  A  L  G  A  E  L  D  G  P  I  K  Y  E  I  H  G  K  :  V  L  L  L  *  G  V  W  M  D  I  C  *  V  F  I  S  R  P  K  A  S  S  K  Q  P  L  A  G  K  S  N  H  D  F  C  N  K  A  N  W  F  L  S  I  D  F  A  F  G  C  T  V  E  R  E  N  R  L  L  Y  M  E  V  K  H  I  *  G  V  L  Q  Q  E  T  I  N  T  V  A  E  F  L  L  Y  L  F  L  M  F  C  S  G  Y  P  F  V  *  H  D  V  L  Y  S  P  T  *  I  V  V  L  H  P  *  P  E  D  S  D  S  S  F  R  Y  G  E  N  F  V  E  K  A  T  L  E  *  V  M  H  C  T  I  W  I  Q  S  E  L  Q  R  G  L  L  T  L  D  G  K  T  K  K  K  N  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74197" stop="74391"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSVLVILLCNMMFCIHQHELWCSTLNQRTRIRASGMEKILLRKPLLNRSCTVRFGFNRSSNVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="76891" PGL_stop="77770"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76891" e_stop="77770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="76891" e_stop="77770" e_length="880"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76891" stop="77770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702462" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTCCAATCTCTTGCCATTGTTCATCACACATCTTGCCCATATACTCTTGAACAAAATGGTGTTGCCGAACGTAAACACCGTCACCTCATTGAAACCGTCGTCACTCTTCTTCATGAGTCTCATCTCCCTGCACCTTTCTGGGTCGAGGCGTTGGCCACTGCCAACTATCTCATCAACCGCATGCTCACACCCTCCCTCTCTAACACATCTCCCTATGAATTTCTATACACACACCGTCCAGATTACACTCATCTTCGACCATTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACCCCGGTCTACACCATGCATCTTTCTAGGCTACCATCCCACCATAAAAGGATACAAATGTTTTGAACTCATCTCTCAAAAAACATATGTCTCTCGTCATGTTCTTTTTATCGAGGAGGATTTTCCCTATCCCCGGTTAAGCTCTGTCAATGCCACGTCCAACCCACTTGGTCTTATTCCAATCTTTCCACCGAGCTCACATGGCCTTATACCGGCATCCATTACCCCATCCATCATACACACACCACCCAATCCCAACCCTCTCATCCCATCCGGATCACCCACCACCCCCAATCCACCCATCCCACCAACTTTCAATCCTCCTTACCAACAATCTCCACCAGCCGAAACAACCCCTCCTCCACCCCCACCCCCTTTACATCATATGCAAACCCGTTCCAAATCCGACATTTTCAAGCCCAAAGTCTACACCACCACTTCACTTGCTCCCTCTCCCTCTGAACCTACTACCTATAAACAAGCATCTACCAACCCCCTTTGGTGTCAGGCTATGGATGATGAATACAGGTCTCTTATTAATCAGCATACTTGGGAATTGGT</gDNA_template>
            <first_frame> L  F  S  N  L  L  P  L  F  I  T  H  L  A  H  I  L  L  N  K  M  V  L  P  N  V  N  T  V  T  S  L  K  P  S  S  L  F  F  M  S  L  I  S  L  H  L  S  G  S  R  R  W  P  L  P  T  I  S  S  T  A  C  S  H  P  P  S  L  T  H  L  P  M  N  F  Y  T  H  T  V  Q  I  T  L  I  F  D  H  L  V  V  L  P  I  L  G  Y  A  L  T  L  N  T  N  F  N  P  G  L  H  H  A  S  F  *  A  T  I  P  P  *  K  D  T  N  V  L  N  S  S  L  K  K  H  M  S  L  V  M  F  F  L  S  R  R  I  F  P  I  P  G  *  A  L  S  M  P  R  P  T  H  L  V  L  F  Q  S  F  H  R  A  H  M  A  L  Y  R  H  P  L  P  H  P  S  Y  T  H  H  P  I  P  T  L  S  S  H  P  D  H  P  P  P  P  I  H  P  S  H  Q  L  S  I  L  L  T  N  N  L  H  Q  P  K  Q  P  L  L  H  P  H  P  L  Y  I  I  C  K  P  V  P  N  P  T  F  S  S  P  K  S  T  P  P  L  H  L  L  P  L  P  L  N  L  L  P  I  N  K  H  L  P  T  P  F  G  V  R  L  W  M  M  N  T  G  L  L  L  I  S  I  L  G  N  W  </first_frame>
            <second_frame>  F  S  P  I  S  C  H  C  S  S  H  I  L  P  I  Y  S  *  T  K  W  C  C  R  T  *  T  P  S  P  H  *  N  R  R  H  S  S  S  *  V  S  S  P  C  T  F  L  G  R  G  V  G  H  C  Q  L  S  H  Q  P  H  A  H  T  L  P  L  *  H  I  S  L  *  I  S  I  H  T  P  S  R  L  H  S  S  S  T  I  W  L  S  C  L  S  L  A  T  P  S  H  S  T  Q  T  S  T  P  V  Y  T  M  H  L  S  R  L  P  S  H  H  K  R  I  Q  M  F  *  T  H  L  S  K  N  I  C  L  S  S  C  S  F  Y  R  G  G  F  S  L  S  P  V  K  L  C  Q  C  H  V  Q  P  T  W  S  Y  S  N  L  S  T  E  L  T  W  P  Y  T  G  I  H  Y  P  I  H  H  T  H  T  T  Q  S  Q  P  S  H  P  I  R  I  T  H  H  P  Q  S  T  H  P  T  N  F  Q  S  S  L  P  T  I  S  T  S  R  N  N  P  S  S  T  P  T  P  F  T  S  Y  A  N  P  F  Q  I  R  H  F  Q  A  Q  S  L  H  H  H  F  T  C  S  L  S  L  *  T  Y  Y  L  *  T  S  I  Y  Q  P  P  L  V  S  G  Y  G  *  *  I  Q  V  S  Y  *  S  A  Y  L  G  I  G </second_frame>
            <third_frame>   F  L  Q  S  L  A  I  V  H  H  T  S  C  P  Y  T  L  E  Q  N  G  V  A  E  R  K  H  R  H  L  I  E  T  V  V  T  L  L  H  E  S  H  L  P  A  P  F  W  V  E  A  L  A  T  A  N  Y  L  I  N  R  M  L  T  P  S  L  S  N  T  S  P  Y  E  F  L  Y  T  H  R  P  D  Y  T  H  L  R  P  F  G  C  L  A  Y  P  W  L  R  P  H  T  Q  H  K  L  Q  P  R  S  T  P  C  I  F  L  G  Y  H  P  T  I  K  G  Y  K  C  F  E  L  I  S  Q  K  T  Y  V  S  R  H  V  L  F  I  E  E  D  F  P  Y  P  R  L  S  S  V  N  A  T  S  N  P  L  G  L  I  P  I  F  P  P  S  S  H  G  L  I  P  A  S  I  T  P  S  I  I  H  T  P  P  N  P  N  P  L  I  P  S  G  S  P  T  T  P  N  P  P  I  P  P  T  F  N  P  P  Y  Q  Q  S  P  P  A  E  T  T  P  P  P  P  P  P  P  L  H  H  M  Q  T  R  S  K  S  D  I  F  K  P  K  V  Y  T  T  T  S  L  A  P  S  P  S  E  P  T  T  Y  K  Q  A  S  T  N  P  L  W  C  Q  A  M  D  D  E  Y  R  S  L  I  N  Q  H  T  W  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLe0124H12.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76893" stop="77768"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLQSLAIVHHTSCPYTLEQNGVAERKHRHLIETVVTLLHESHLPAPFWVEALATANYLINRMLTPSLSNTSPYEFLYTHRPDYTHLRPFGCLAYPWLRPHTQHKLQPRSTPCIFLGYHPTIKGYKCFELISQKTYVSRHVLFIEEDFPYPRLSSVNATSNPLGLIPIFPPSSHGLIPASITPSIIHTPPNPNPLIPSGSPTTPNPPIPPTFNPPYQQSPPAETTPPPPPPPLHHMQTRSKSDIFKPKVYTTTSLAPSPSEPTTYKQASTNPLWCQAMDDEYRSLINQHTWEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 135 chains have been computed
$ 
$ memory statistics:
$ 317056 bytes spliced alignments in total
$ 62 spliced alignments have been stored
$ 5113 bytes was the average size of a spliced alignment
$ 23680 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1578 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 166 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:34:00
-->
