<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:33:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLf0014I11-3QReo/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7287-3" ref_strand="+" ref_description="SGN-M7287-3 C2_At2g24765-3 [cosii_markers]">
      <seq>cccaaatctcaattggttgtaaaaaccatttttttttcatactcctctatgtctttgtggttgatccaattcacactttctctcttctaacttaaccttaacactaatcaagttcccaaagcagacccttgagctttctctgaaagcaagcgaagggggaaatgggattagtgttttcacgattgttttcttcgttatttgggaacaaggaagctcggatcttagttcttggacttgacaatgctggcaaaacaacaattctctatcgtcttcagatgggtgaagtagtttccactattccaacaattggatttaatgttgagacggtgcagtataacaatataaagtttcaagtttgggatctagggggacagactagtatcaggccatactggaggtgctattttcctaatactcaagctataatctacgttgtcgactcaagtgacactgataggctcgtggttgctaacgaggagttccacgccatattggaggaggaagagttaaagggtgctgtcgtcctcatctatgctaacaagcaggatcttcctggtgcacttgatgatgctgcagtgactgaggccttagagctgcacaagattaaaaataggcagtgggctatttttaagacttctgccatcaaaggagaagggctctttgagggcttggactggttgagtaatacactcaaatccggaggtggctaaatttttgtaaacgatgcagcagatagactgtgaagacaaacaagagagaacttggtagtaatgtgtgaatcgatttcggccttcaattatttttctaattgccatagtttctggttaatgcgaactgctcggatataatgtttatacttatcacagataatgagaatacggggctttattttgacttcatagattacaatttacactctcttttcttgaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLf0014I11.1" temp_strand="+" temp_description="C07SLf0014I11.1  AC236764.1 htgs_phase:2 submitted_to_sgn_as:gi|238909041|gb|AC236764.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0014I11, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces">
        <position start="34683" stop="46043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35003" g_stop="35081" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="119" r_length="77" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35082" i_stop="35204" i_length="123">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.873" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35205" g_stop="35356" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="264" r_length="145" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35357" i_stop="35470" i_length="114">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35471" g_stop="35509" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="303" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35510" i_stop="36245" i_length="736">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36246" g_stop="36308" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="366" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36309" i_stop="38635" i_length="2327">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38636" g_stop="38654" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="385" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38655" i_stop="41195" i_length="2541">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.614" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41307" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="497" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41308" i_stop="44441" i_length="3134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44442" g_stop="44489" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="545" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44490" i_stop="44983" i_length="494">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44984" g_stop="45114" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="676" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45115" i_stop="45515" i_length="401">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45516" g_stop="45749" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="923" r_length="247" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="929" polyA_stop="949"/>
      <MATCH_line gen_id="C07SLf0014I11.1" gen_strand="+" ref_id="SGN-M7287-3" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0014I11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7287-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35003" e_stop="35081"/>
          <exon e_start="35205" e_stop="35356"/>
          <exon e_start="35471" e_stop="35509"/>
          <exon e_start="36246" e_stop="36308"/>
          <exon e_start="38636" e_stop="38654"/>
          <exon e_start="41196" e_stop="41307"/>
          <exon e_start="44442" e_stop="44489"/>
          <exon e_start="44984" e_stop="45114"/>
          <exon e_start="45516" e_stop="45749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATATGTGTTTTTTGGTTGATCCAATTGACAATTTCTCTCTTCTAGCTTAACCCCAAACACTAATCAAGTTCCCAAATCAGCTGGTAATTCACTTCAAAGAAAAATCTAGCTTTTTTCCTTTATTGGGTCACCATAAATTTGTCTAAACATTCATTTTTTTTGTACAATTTTGCCTTTTGCTTATTGGGGTTCTTCAAGATCTGATCTTTGATTTTGTATATACAGAAAAGCAAGCGAAAGGGGGGAAATGGGATTAGTGTTTTCACGATTGTTTTCTTCGTTATTTGGAAACAAGGAAGCTCGGATCTTAGTTCTTGGACTTGACAATGCTGGCAAAACAACAATTCTCTGTATGATTTACTCCTTTTTATGAATACCCTTTTGCTTATTTTTTGATTTGAATTCTGGGTTTTCATATTCAGTTCGATTAGTATGATGATTCCTTGTTTTTTTTAATCATGCAGATCGTCTTCAGATGGGTGAAGTAGTTTCCACTATACCAAGTAGGTTCTTTTTCTTGATTTCTCTTTCATTAATCCTTTCAATAGTTTAGTGAAGTGAAAGATTACTTGGGGAATAGAAATGGGGGGAGGGGATTATAAAGTAAGGAATCAAAGTCAAACCAACTGAGCTACTAAGATTCCCCGCATTACTTATGTTATTCTCCATTCAGATTTGTTTGTTTCCTTTATGCTTGTATCAATCTTACTCAAACCAAAACAAATACTATAAACCAGTTCTATGAAAAGAAATAAGATGTGTAAAATGTAAATCAACATAAGAGTTAGTATAGTTGCAATGCTTTTGTGTACCAATGTTGATAGATTTCATTTGAGAGTATTACTTAAAAAGACCGACTATTTATGATGCCGAGTTGATTAGAGATAAATTTAGTCATTTTCTAGTGAATATGATGTATAAAAATGAAACTGTGGTATTGTCTATTATCTCTATCTTTTTGGGTTATGAGGTAGAAATGTATCTACGAAATTTTATGTGCTATCTATGGGTGGGAAAATCATCCGCCAGGCAAACACTAGTAAGGTGTACATCAACATTCAGATTTGAGCAAACCCATGCTTCAGTGGGATTTGAACCTTGGCCTCTACCTTAATCGTTGAGCTATAATTTCATTGCATTTTCTTACATTCTTTAAGTGAAGAGAGGATATTGGTTTTCTTTGTATGTTTGTCCTGTTTTTCTTGTAATGGATGGTTTTTGTTGATTTTCATGATGCAGCAATTGGATTTAATGTTGAGACGGTGCAGTATAACAATATAAAGTTTCAAGTTTGGGATCTAGGTAAACTGATGGATTAATTTGACGTTTGGTGCAAAGTATTTGTTCTATATGTTCTGAGTTTTCCTGAACCTTAACTAGATTTTGTTTGAATAATGCTTTGCTTTCTTCCCAATTTTGTTAGGAGCTCAATCTTTTCCAGCTTTATTCTCATAAGATACTCATTTCATGCTCTTTGCTTGACGCTTATATCTGTAGTAAATGTTTTCCTTGAAATTTCCTTAACTTAAAATAAGTTTTGTTAGACAGGATGGCTTCAGTTCTTCCCAGTTTTTTAAATTAGTTCAAACTTTTGCAGCTTTTCGCACAAGACACTAATTTCATGCAACTTTGATGCTTTTACATGGCTATATATGTTCAATAGGGATGGTCACAGGCTCTCAAAATTAAAAAATGAATAATCACTTCATGTAAATTGTAGATCTTTCATTTATCTCTAAATTAAGCTTTGTGTCAGTATATGAGTCATTGGTGTCTGGCGTATTGTATCCTAAAGCTTGCACAGAAAGGCTTGAACTAGTGTTTAGTGAAGTGGGAGGAGAGCTATTAGGTCTCCAAATTCCAGCAGAGGCAAAAAAACACTAGGTTATTCTTTCCATTTGCCTAAGCCTTAATGAACTTACCTGACCTCTGAGCTAGTTAGAGGTAACATCATAGGAGGTGCCTGGTTAAATTGTCAAGATGCACACAAGTTGGTCCGGAAACCACCTTTTTGTTTAAAAAATGTATCCTAAAGCTTAGTAATTAAGGTGCATGTCTTGACAAAGGAGGGATTACCTAGTGGGAAAGATATTCCACCTCCAACCATAATATTGGGTGTTGAGTTACCAAGGGAGCAAAGTGGGAAAGGACCCCACCACCATATGCTTCATAAAAAGTGTGCACTTCAGATAAAGACATGCAAAGCAATCTCAAAGTGGGAAAGGACCCCATCACCACCCCCGCCTTGTCCGGAGTTTCTTCATTCTTAATCTGATCTCTCTTTATTTGTCCACACATCAATCTCAGCATCCTCATTTCTACTACTTTCATCTTTTGAACAAGGAAGTTTTTGATTGACCAACACAATGCCCCATACAACATAGTCAGTGTAACCACCACATGGTAGAACTTACCTTTAAGTATTGATGACACATTTTTAACCGTATGCAAGTCTCCATTTCATCCACCTGGCTTCAATATGATGTGTGACATCATTGTCAATCTCTTTACACCTTGGATTTACTGACCTAGGTACTTGAAACTTCCTCTCTTGAGTATGACGTGTGTATTAAGCCTCATGTCCATGTCCGCTTCATGAGTCCTGTCATTGAACTTACACTCCCGAAGGTAGGATATGAGTTGGAAAAAAATGTTTTCAGGGATACTGAGAACAATTTGTGTAAAGCTATCTATATGGGCATATGGCTAACATGCCACGAAAAAATTACTCAAAGTCTTGGAATTATCTCAATACACAATTCTCAGCATGTGATGTATAGTTATTGTTTCTTTTTCCAAGAATGCTTTGTCATGCTTTCTATAATATGTTTCCATGATATCTTCACTTCCGTTAGGCGTTATTTCTTTTTCCATCTACTTTGATATGCTTTTCCTTGAGCTGAGCGCATTATCAGAAACAACTCCCTACCTCCCAGACCCACTTGTGAGATTACACTGTGTATGTTGTTGAAAGATTATCAGCATGTGATCTCATTGCTTACTGCTTAAAGAATGTGTAGTTTCATGTAGTGGACGTATATCCCAAATCTTTACTGTAAGAGTTTCTGATGATTTTTGTCTTCGAAAAAAGAGATTCTGCTGATTTTCGTTAAACAACTTGACTATTCGGTGTTCAATTTGTGTGTATCTGATTCCTTTAGCTACATTTCCTAGTGATTTACGCTTTTCCTCATCAAGTTTGTTTTGCTATATCATGTGAAGATTTAGACCAAGGGTTCACATAAAGAATGGTTAGTATAGGGGATAGGTTGTGGTTGGAGAGCTTTAGGCAGAAAGGTAGGCATAATGCGATGAGCCAAAAATGAATTTTGTTTCTGCTTAAAGGCAAACAGCGAAAGAGGTATGTTACCCTTCAGAGAAAATACTAAACTACACCTCGGCATTGTAATAAAAATGGAAGTGTAATAGTGCAAATCTCTCTGATTGTTCAGACAAAAGATCATTGTTTAGGGTTCTTCTTTATTTTTGTGGGTGTTTTTGACAGATTTGCTTTTGTTGCGTTCTTCTGCATAGCGTCATTTCTATTTGTTTTCCTCTCTACCTAGAATCAACAATATGACTTTCTTCTAATTATGTTTCTTTTTTTCACCCTTTTTACAATAATGCAGGGGGACAGACTAGTATCAGGTAACTTCTAACTGACTCTGAAACTTATAATAAAAAGATTTGTACATATATATCTTTTGTATCTATCTTGAAATCTACTAATGTGCATGGTGGATGTTAACTTCATATCATTGATTAGTATGCTCGTCTCCCCTCCCCTTTCAGTCTTTCCATTTCTTTTTGTAGTTGATGTGCTAGTGCAGACTTGTGATATTTTTTTATAAATAAAGGTCATACTGCACATACCTAGTCAATATCTAGAGTTCCTTACTTGATGACCAATGTCATAAGTGGTTCACTTCCTTACCTTCCAAGTTTTCACTCTCTGATGGGATTCCATGGATGGTAATGTAAAACTGGCTCCAGTGATCAGGAATTGGCTCATCAGTGAAGATGTGAATAACAAGTCAATTTGGGATTATTAAGCTGAAAATTGAAGTTCGATGTATTCAAGACTTGATTTTTCTCAATATATGCAGTGTCTAGAAATCAGATCTGTTGATTTTTAGTACTTCAGCATTAATATTAGGCCACGAGACAACCACTTCCACTTCTTTAGCTTATAGAACATTTTACAGTAAGTAAAGGTAGATCTTATCTACTATCCGTGTGACTAGTTTATAGCATAAATGCTTTCACGGACTTGGCAATTAGGGTATCTTCCTTTTAGACAATTCGTCTTGGTCTTAGGGTTGTAGCTTTTTGGAGAATTACTATATATGTCTCAGAAACCATATCTATTGAGGAAAAAGTTCTATTAGTTTTGAGAACACTAAAAATTCTTCTCTGCTTTGTTTAGAAAGAAACTAGGGAAATATGTGTCTTGTTTACATCTATGGGATTTTCTTTGAGCCGGATAGCACGTGAAGACAACAAATTTGAAGATCTCCATATATTTGGGCTCTACTACTGATGTTCATGAGTCTTGGGAGGCTGTAGCAGGCTTATGCTGTTGTCCAAATTTCCACTGTGATGTTTTGACACACTGCTGGCAAGATTTTATTGACTCTTAACCAAAAATGGAACAATATGTATCGGATACCCAGGTTGTAGGTTACAAGCAAAGTTATTCATTCAGATATTCATGGTTGGCATATTTTTTAAAGGGAACTGTCACGCCTTTAGGACCAGAAGGTGGCAGAGTGCCAAAGCTTGGTCTATTTGTTCGACAAGCTAAGTATGCTTGTATATTGCAGGATAGTCACGATGTATGCCTGTATGGAGGTGGGTACAAGGAATAACAGAGTGTTCTCTCAATTTATTATGAAATGTTTCTGGTTAGGGGGGAGAATGCATTTCCATATAGCTCGATTTAGATCTCAAAAAGTATAGAGAAAGGTGTGTTCTTTTTTTCTTTTCACTTGGCTAGCAGCAACAGGGGGTGATGTTGGCGGCTAAGAATTTGAGAAAGAGGAAGGTTGCTTATGTCAAAGGTGTTGACCATCTCTTCATTCACTGTTTGGCAATTTCGAGGTTATGGGGGGAAATCCTTAGTTGGTTTGGGCCAGTTTCGGTGATGCCACACACAGTGAAAGAGCTTATTTTCACTTGGAACTATGGTCACTATGATAAAAGAAGGAAAATATGTAGGGCTTGGAATGTTGTTCTACCAGCACTTATATGGATTATTTTAAGAGAGAATAAGAGAGCTTTGAGTGGGTAGAGATGAATTTTGTACATTGAGTATTACCCTCTATCCTTTATTTCGTTTCGGTGCACCCATGAAATTCCTTTATGTATTGATGACTTAATGTCTTTCGTAGAATTCCATTTATTTTTGTATGTTTTCTACTTTTTGGTATACATGTTGTATATGGGTGTTTTGTTTTTTGCTCAAACATCAATAAAAATTTATTGCTTCATCAAAAGATTATCTTCAGGCATGAGTAAAAGCCGAGTCAAACCTTCACTTTTTCTGTGGCCATTTTGGGGTTGGGGCTTGCTTCAATTTAGTGCCTCAAAAACTGAACTATTTAATGACTTTTAGATATACAAGGTCTATATCTCCGGAGGTTCTCGTAAATCACTCTTGTTCCCCTGGTTAAGCCTCATACTGTTTTTTTCTTTTGATAAAGTTAAAGTTGTATTCTTCAGCATTAAGGGTAAGCTGGCTACCTCCAAAAATTTACAAGCTAAATCCCGAATTACATAGATCCAAGGAAATCTACCAACTGTTCTACTTCTTCTATACCATCTTCTTTACACCAAAAAAATAACATGTTAATGCAATTTTCTTCAACTTTCTTCTCATGACACTTGAGGTTTCTTTCTCTCCAAATAGCCCACCAGACACAAGTAGGTACTATAGACCACCATTTTTTTTGGGTCTTTCCCCCTCTCTCCCTCATCCAAAAGCTCAAAGAATCAGCAGTATGTTTTGGCATCAAAAGATGCTGAGATAACAGTATGAGGTTAAGCCTCATACTGTTATCTCAGCATCTTTTGATACTGTGTACCTACTATGTATGAACTTATAGTTGCCATCATAATGTATATCTCATCTCCCATTTCATGATTTTTTGAAATGTGGAAAGGTCCTTCATGGTTTCTTTTGCTGGTTAGGCCATACTGGAGGTGCTATTTTCCTAATACTCAAGCTATAATCTACGTTGTCGACTCAAGTGACACTGATAGGCTCGTGGTTGCTAAAGAGGAGTTCCACGCCATATTGGAGGTACCTTTTCCTTATTGGTCTCTCTCACTCTCTATACGTATATGTATGTCTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATAAAATCTTCCTGCTTGTTGAAAATTAGGTTCCATTGTGACCAGTTGCTGCTAAATAGGACATATCTTTTTATTTTGGATCCAGACACTGAATGCTAAGTAAACTTGATTTATGAAAACAACGGCTATCGGCTAGTATTGCAAAAGAAATGCTTGTTCTTTACTCCTTTTCAATGTTTCCCTGTTAAGTGAAGGGATTCTGAACTCACAATAATACCCCCAAAATTGTCATTTCAGAATATACAGCACTTGTGAAACTACAAAATAGAAAGTTTACCAGAAGCATAAGGCAACAACAACAATATACTCAATATAATCCCATAAGGAGTTTGGGGAGGGTGGTGTGTACGCAGACCTTACCCCTACCTTGGGAAGGTAGATAGGTTGTTTCTGGAAAATTCTCGGTTTGAGTAAAGCAATTTAAAGCAAAAAGATGAATAAAACAATAGCGGTAGCAAATAGTACGATAATTAAAGCAAAAAGAAAACAACATATGCTAATAAAACTCAAAGAATAAGACAATATGGTAGTGATGATAAAGCAAAGGAAACCAGTAATAATAAAAAACTGAGAATAAGATAATAGGACAATATACTAATAATACTTATATGGGAAAGTCAGTTACTAACTTCAAATCCTCGACGGATTATGGTGCAAATAACATTCACCATGGTACCTCCCCTTGGATATGACACATCAATTATCCAACGCCAGGATAAATAAAAACAGGCTAAGAGCTGATCCCTGGTGTAACCCCATCACGATTGAGAATTGTTCAAAGTCTCTTCCTAGTGTCCTTACACGGATCTTGGCTCCTTTGTGCCATTGTTGTCAAAGCCGCGTTTAAAGGCACTTTTACTCTAAAGTGAGGTTCAAAACATGTTGAGCGCTTTGCTTCACTTAATGTGCACTTCAGTGTTGTGACAAGACATATTTTCTTGCCAATAAACGTTTCTTGAAGAAGTGACATCAAACAATCAAAAATTCACTTTATTGTTATTCTTTTCGTCCATATATTTGTTATTCATGAACGGAGCTTTAGTATAACTGGTAAAGTTGCTGCCATGTGACTAGGAGGTCATGTGTTCGAGCTGTGGAAACAACCTTGTGGTTCGGCCCTTCCTCGTACATGATGCATAGTGTAGCTTAGTCCACCGGACTGCCCTTTATATTTGTTTCATGCGTATAGTTATTATTCTTGGATTAAACAAACTTGTAGATGGTAGAAAATGAGGGGGGGGGGTGCGGAAGGGGATTGAAGATGATGAGAAAAATGACGGCGGAGAAAGAAGAAAATAATGGAGAGGGAAAGGAGACGTAAATGACGCAAAGGGGAGATGGAAGAGAAACAGATAAAATGGGGAGGGGGGATATATTCTGTAGAATTCTATGTTACCTTTATAAAAAAACAATATTCTGTAGGATTCTTTGAACATTTTTTTCCTTTTCATCACATTTTTGTTTTGGTATTCAAACTTATTTTAATTTTACATGTTACGTGGGTTTGATGTGTCATCCATGTCAGGGCAAGTGAGGAACACACAACATTGAAGGTGTTTAAAATATTTGTTTTGATTGAGTTGAGGTGTTTGGATGAAACTCTGGAGTAGAGGGGAGCTGCTTGTCAAAACAGGACAAGAGTGTTATTTGAAAAGCTGTTTTAGCAAAGTGATTTACAGAATAAGCAGTTCTTAGAATTGGCTCTACAGAGGTCTTCTATGACTTTGTTTTTTCTCAAAAGAACTTAATGTAAAAATTGTACATATTTTTTTGGTGGTGCAAGTTGATTGACAATGTTTTTCTTCTAGTTTTCTTTAAAGAAAATGGATGAAAGTAGACTTATATTCATATGGAAGGAATTGTCTCAAATATCCTATAATCTAATTCATGTAGATTTAGCGGAAGTTAAAACACAATGGGAGATAAGAATCTATAGAGGCGACGAAAATAAGTTTGAGATATGTTTTAGTCAAGTTAATATGTTTATCAATTAGTTTGGAATATGTTTTAGTCATGTTAATACATTTCCTTCAGGCCCCATGGTTTTTAGGAGTCTTTCAGCTTTGCCAGAGATTTATATACCAATAAAAATTATAGGGAACTTCTAATACTCTCTCTATTCCATATTAACTGAATTTTGGTTTTTTTTCTTCAAATAAGTGAAATGTTCCAAGTTCAAGATAAATGTTTGAACTTTTTTCCATTTTTGCCCTTCATTTACATTTATTAGGTGAAGTTCAAGAGAGTTAATTTCTCATATTTATGATTTTATTTTGAGTTATTTCTATATTCAGGAATAGTTTAACAATAACTTAAAGGGTAAATTGGAAAGTAATGTTCAATTTATGTCACTTTTCTTTTTAATGGATGTGCATTGTCTCACAAGTTCTCTTAATATGGAATAGAGGGAGTATTATTTGTTTTTATTTTATATAATATTGGTTTGAGATGAGTTGAACGGAGAAACATGGTTAGTGAGGTTATATAGCCGTCTCTACTTTGTTTGAGATTAGGTCTTTGCTGCTCTTCTGATGGAAGTCAAAATCTCTCCGAGTGATTTTTTAGTTGTGGTTACTCTGCTACCTGAAAGTGACATGTGTCCTTCAGTTGTATAGAGACTTGAAAATGGAAAGGTTGCCTGTACATGTTTTTTTTTTTTAAATTTTTCATGCTATAACTTTTGCTAAGTTGAAGAGCCATTTTGCTGCAAGTGGGGAATAATTTCAACTAATGATAGAATTGTATTTGTGTGGGTGCCAGAGATTCAACTTCTTAAGAGTTGTACAAATAGTAGAAATACAATTTGTTCTACCAGGAAGCCATCTATTTTTTTCCTTTTGATTCTTTTAATTTCTAGTTAAGCTTTCTGGGTCCTATCTTTTATTTGACTTCTGAGGAATAGCATTTACGATGTGTTTTACTTATGAGGATGGTCATTGATGATGCATGTTTCCTTTTTTTTTTCCCAGGAGGAAGAGTTGAAGGGTGCTGTTGTCCTCATCTATGCTAACAAGCAGGTTTGCGTCCTTGCTAGTTCTTTTTCTACATAGCTGAGAAAGAAGCTTTGATCCATTTGATCCTGGAATAAATACAATGTTTTCTTTCATTATTAAAGCCATAGTTTTGGGTTACTATTTAGAAGTATTAAAATTGCTACATAGTTCTTTTGCCTCTCAGAGTTTGCATGACAATGTAAGGATAGCCTGAGATTTATAGAACCTCTAGATTCAGAAAATCTCTAGTTTGTTTTAAAAGACAAACTATTGGTTATTGGACTGTAATCGGCCCAATGGAGTGCAATTGGAAATAGATGAGTCATTTAGCAGCCTCCAAATAGTTTGGATATTAAGCTGTAGTCGTTCTTTCTTTGGCCGACTTGCATTCTCTCTCTCTCATGCGTGTACGTCCGACACTGAAATACCAACCCACATATAGACTGACAGTAGCCGTTTGTTCAGATAAGCATGTAATCATTCACTATCATTTATTTAGAGTCTTCAATTGTTGACAGGATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGGCCTTAGAGCTGCACAAGATTAAAAGTAGGCAGTGGGCTATTTTTAAGACTTCTGCCATCAAAGGAGAAGGGCTCTTTGAGGGCTTGGACTGGTGAGCTCAACTTCTCACTTTTTTTTATATGTTGCTACAGCAATTATATGGCATGAATGCAAACCATATTTTTTGAAACTCTAGTTGATTCCACCGGTCGTACCAGTGTTCTCATTTGTCATTAAGTGGGCTCCTTGAAAAAAAAGGGCACTCTGGTGCCCAACATCTTGCGTTCATGTAAGGTCCTGGGAAGGGTCTCACCCTAAGGGGATGAAATGTAGGCAGCCTACCATGATTCAAGGATCAGTGGTAATTTTAGTCATTTAGCAGCCTCAACTTCTCTTCATTATCTTTGCTGATATCATATTTTGCATTTCTTTTCTGAAATGTCTTTCACATGACTTGAACACGCACACACTCAGATAAACCTATCGTTCTCATGTCGATTGTTCTAAATGTAGGTTGAGTAATACACTCAAATCCGGAGGTGGCTAAATTTTTGTAAACGATGCTGCAGATAAACTGTGAAGACAAACAAGAGAGAACTT-G--G---TGT-T-AAT-G---T-GGCCTTCAATTATTTTTCTAATTGCCATAGTTTCTGATTAATGCGAACTGCTCGGATATAATGTTTATACTTATCACAGATAATGAGAATACGAGGCTTTATTTTGACTTCATAGATTACAATTTACACTTGAAAA</genome_strand>
        <mrna_strand>TCCTCTATGTCTTT-GTGGTTGATCCAATTCACACTTTCTCTCTTCTAACTTAA-CCTTAACACTAATCAAGTTCCCAA...........................................................................................................................AGCAGACCCTTGAGCTT-TCTCT---G-AAAGCAAGCG-AA-GGGGGAAATGGGATTAGTGTTTTCACGATTGTTTTCTTCGTTATTTGGGAACAAGGAAGCTCGGATCTTAGTTCTTGGACTTGACAATGCTGGCAAAACAACAATTCTCT..................................................................................................................ATCGTCTTCAGATGGGTGAAGTAGTTTCCACTATTCCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGGATTTAATGTTGAGACGGTGCAGTATAACAATATAAAGTTTCAAGTTTGGGATCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGACAGACTAGTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATACTGGAGGTGCTATTTTCCTAATACTCAAGCTATAATCTACGTTGTCGACTCAAGTGACACTGATAGGCTCGTGGTTGCTAACGAGGAGTTCCACGCCATATTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGAGTTAAAGGGTGCTGTCGTCCTCATCTATGCTAACAAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGGCCTTAGAGCTGCACAAGATTAAAAATAGGCAGTGGGCTATTTTTAAGACTTCTGCCATCAAAGGAGAAGGGCTCTTTGAGGGCTTGGACTG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTAATACACTCAAATCCGGAGGTGGCTAAATTTTTGTAAACGATGCAGCAGATAGACTGTGAAGACAAACAAGAGAGAACTTGGTAGTAATGTGTGAATCGATTTCGGCCTTCAATTATTTTTCTAATTGCCATAGTTTCTGGTTAATGCGAACTGCTCGGATATAATGTTTATACTTATCACAGATAATGAGAATACGGGGCTTTATTTTGACTTCATAGATTACAATTTACACTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7287-2" ref_strand="+" ref_description="SGN-M7287-2 C2_At2g24765-2 [cosii_markers]">
      <seq>caaacactaatcaagttcccaaatcagctgaaaagcaagcgaaaggggggaaatgggattagtgttttcacgattgttttcttcgttatttggaaacaaggaagctcggatcttagttcttggacttgacaatgctggcaaaacaacaattctctatcgtcttcagatgggtgaagtagtttccactataccaacaattggatttaatgttgagacggtgcagtataacaatataaagtttcaagtttgggatctagggggacagactagtatcaggccatactggaggtgctattttcctaatactcaagctataatctacgttgtcgactcaagtgacactgataggctcgtggttgctaaagaggagttccacgccatattggaggaggaagagttgaagggtgctgttgtcctcatctatgctaacaagcaggatcttcctggtgcacttgatgatgctgcagtgactgaggccttagagctgcacaagattaaaagtaggcagtgggctatttttaagacttctgccatcaaaggagaagggctctttgagggcttggactggttgagtaatacactcaaatccggaggtggctaaatttttgtaaacgatgctgcagataaactgtgaagacaaacaagagagaacttggtgttaatgtggccttcaattatttttctaattgccatagtttctgattaatgcgaactgctcggatataatgtttatacttatcacagataatgagaatacgaggctttattttgacttcatagattacaatttacacttgaaaagctcaatgtttcttctgtaaaanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLf0014I11.1" temp_strand="+" temp_description="C07SLf0014I11.1  AC236764.1 htgs_phase:2 submitted_to_sgn_as:gi|238909041|gb|AC236764.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0014I11, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces">
        <position start="34760" stop="46067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35060" g_stop="35089" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35090" i_stop="35231" i_length="142">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35232" g_stop="35356" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="155" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35357" i_stop="35470" i_length="114">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35471" g_stop="35509" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="194" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35510" i_stop="36245" i_length="736">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36246" g_stop="36308" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="257" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36309" i_stop="38635" i_length="2327">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38636" g_stop="38654" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="276" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38655" i_stop="41195" i_length="2541">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.614" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41196" g_stop="41307" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="388" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41308" i_stop="44441" i_length="3134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44442" g_stop="44489" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="436" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44490" i_stop="44983" i_length="494">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44984" g_stop="45114" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="567" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45115" i_stop="45515" i_length="401">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45516" g_stop="45765" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="817" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="820" polyA_stop="832"/>
      <MATCH_line gen_id="C07SLf0014I11.1" gen_strand="+" ref_id="SGN-M7287-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0014I11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7287-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35060" e_stop="35089"/>
          <exon e_start="35232" e_stop="35356"/>
          <exon e_start="35471" e_stop="35509"/>
          <exon e_start="36246" e_stop="36308"/>
          <exon e_start="38636" e_stop="38654"/>
          <exon e_start="41196" e_stop="41307"/>
          <exon e_start="44442" e_stop="44489"/>
          <exon e_start="44984" e_stop="45114"/>
          <exon e_start="45516" e_stop="45765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTAATCAAGTTCCCAAATCAGCTGGTAATTCACTTCAAAGAAAAATCTAGCTTTTTTCCTTTATTGGGTCACCATAAATTTGTCTAAACATTCATTTTTTTTGTACAATTTTGCCTTTTGCTTATTGGGGTTCTTCAAGATCTGATCTTTGATTTTGTATATACAGAAAAGCAAGCGAAAGGGGGGAAATGGGATTAGTGTTTTCACGATTGTTTTCTTCGTTATTTGGAAACAAGGAAGCTCGGATCTTAGTTCTTGGACTTGACAATGCTGGCAAAACAACAATTCTCTGTATGATTTACTCCTTTTTATGAATACCCTTTTGCTTATTTTTTGATTTGAATTCTGGGTTTTCATATTCAGTTCGATTAGTATGATGATTCCTTGTTTTTTTTAATCATGCAGATCGTCTTCAGATGGGTGAAGTAGTTTCCACTATACCAAGTAGGTTCTTTTTCTTGATTTCTCTTTCATTAATCCTTTCAATAGTTTAGTGAAGTGAAAGATTACTTGGGGAATAGAAATGGGGGGAGGGGATTATAAAGTAAGGAATCAAAGTCAAACCAACTGAGCTACTAAGATTCCCCGCATTACTTATGTTATTCTCCATTCAGATTTGTTTGTTTCCTTTATGCTTGTATCAATCTTACTCAAACCAAAACAAATACTATAAACCAGTTCTATGAAAAGAAATAAGATGTGTAAAATGTAAATCAACATAAGAGTTAGTATAGTTGCAATGCTTTTGTGTACCAATGTTGATAGATTTCATTTGAGAGTATTACTTAAAAAGACCGACTATTTATGATGCCGAGTTGATTAGAGATAAATTTAGTCATTTTCTAGTGAATATGATGTATAAAAATGAAACTGTGGTATTGTCTATTATCTCTATCTTTTTGGGTTATGAGGTAGAAATGTATCTACGAAATTTTATGTGCTATCTATGGGTGGGAAAATCATCCGCCAGGCAAACACTAGTAAGGTGTACATCAACATTCAGATTTGAGCAAACCCATGCTTCAGTGGGATTTGAACCTTGGCCTCTACCTTAATCGTTGAGCTATAATTTCATTGCATTTTCTTACATTCTTTAAGTGAAGAGAGGATATTGGTTTTCTTTGTATGTTTGTCCTGTTTTTCTTGTAATGGATGGTTTTTGTTGATTTTCATGATGCAGCAATTGGATTTAATGTTGAGACGGTGCAGTATAACAATATAAAGTTTCAAGTTTGGGATCTAGGTAAACTGATGGATTAATTTGACGTTTGGTGCAAAGTATTTGTTCTATATGTTCTGAGTTTTCCTGAACCTTAACTAGATTTTGTTTGAATAATGCTTTGCTTTCTTCCCAATTTTGTTAGGAGCTCAATCTTTTCCAGCTTTATTCTCATAAGATACTCATTTCATGCTCTTTGCTTGACGCTTATATCTGTAGTAAATGTTTTCCTTGAAATTTCCTTAACTTAAAATAAGTTTTGTTAGACAGGATGGCTTCAGTTCTTCCCAGTTTTTTAAATTAGTTCAAACTTTTGCAGCTTTTCGCACAAGACACTAATTTCATGCAACTTTGATGCTTTTACATGGCTATATATGTTCAATAGGGATGGTCACAGGCTCTCAAAATTAAAAAATGAATAATCACTTCATGTAAATTGTAGATCTTTCATTTATCTCTAAATTAAGCTTTGTGTCAGTATATGAGTCATTGGTGTCTGGCGTATTGTATCCTAAAGCTTGCACAGAAAGGCTTGAACTAGTGTTTAGTGAAGTGGGAGGAGAGCTATTAGGTCTCCAAATTCCAGCAGAGGCAAAAAAACACTAGGTTATTCTTTCCATTTGCCTAAGCCTTAATGAACTTACCTGACCTCTGAGCTAGTTAGAGGTAACATCATAGGAGGTGCCTGGTTAAATTGTCAAGATGCACACAAGTTGGTCCGGAAACCACCTTTTTGTTTAAAAAATGTATCCTAAAGCTTAGTAATTAAGGTGCATGTCTTGACAAAGGAGGGATTACCTAGTGGGAAAGATATTCCACCTCCAACCATAATATTGGGTGTTGAGTTACCAAGGGAGCAAAGTGGGAAAGGACCCCACCACCATATGCTTCATAAAAAGTGTGCACTTCAGATAAAGACATGCAAAGCAATCTCAAAGTGGGAAAGGACCCCATCACCACCCCCGCCTTGTCCGGAGTTTCTTCATTCTTAATCTGATCTCTCTTTATTTGTCCACACATCAATCTCAGCATCCTCATTTCTACTACTTTCATCTTTTGAACAAGGAAGTTTTTGATTGACCAACACAATGCCCCATACAACATAGTCAGTGTAACCACCACATGGTAGAACTTACCTTTAAGTATTGATGACACATTTTTAACCGTATGCAAGTCTCCATTTCATCCACCTGGCTTCAATATGATGTGTGACATCATTGTCAATCTCTTTACACCTTGGATTTACTGACCTAGGTACTTGAAACTTCCTCTCTTGAGTATGACGTGTGTATTAAGCCTCATGTCCATGTCCGCTTCATGAGTCCTGTCATTGAACTTACACTCCCGAAGGTAGGATATGAGTTGGAAAAAAATGTTTTCAGGGATACTGAGAACAATTTGTGTAAAGCTATCTATATGGGCATATGGCTAACATGCCACGAAAAAATTACTCAAAGTCTTGGAATTATCTCAATACACAATTCTCAGCATGTGATGTATAGTTATTGTTTCTTTTTCCAAGAATGCTTTGTCATGCTTTCTATAATATGTTTCCATGATATCTTCACTTCCGTTAGGCGTTATTTCTTTTTCCATCTACTTTGATATGCTTTTCCTTGAGCTGAGCGCATTATCAGAAACAACTCCCTACCTCCCAGACCCACTTGTGAGATTACACTGTGTATGTTGTTGAAAGATTATCAGCATGTGATCTCATTGCTTACTGCTTAAAGAATGTGTAGTTTCATGTAGTGGACGTATATCCCAAATCTTTACTGTAAGAGTTTCTGATGATTTTTGTCTTCGAAAAAAGAGATTCTGCTGATTTTCGTTAAACAACTTGACTATTCGGTGTTCAATTTGTGTGTATCTGATTCCTTTAGCTACATTTCCTAGTGATTTACGCTTTTCCTCATCAAGTTTGTTTTGCTATATCATGTGAAGATTTAGACCAAGGGTTCACATAAAGAATGGTTAGTATAGGGGATAGGTTGTGGTTGGAGAGCTTTAGGCAGAAAGGTAGGCATAATGCGATGAGCCAAAAATGAATTTTGTTTCTGCTTAAAGGCAAACAGCGAAAGAGGTATGTTACCCTTCAGAGAAAATACTAAACTACACCTCGGCATTGTAATAAAAATGGAAGTGTAATAGTGCAAATCTCTCTGATTGTTCAGACAAAAGATCATTGTTTAGGGTTCTTCTTTATTTTTGTGGGTGTTTTTGACAGATTTGCTTTTGTTGCGTTCTTCTGCATAGCGTCATTTCTATTTGTTTTCCTCTCTACCTAGAATCAACAATATGACTTTCTTCTAATTATGTTTCTTTTTTTCACCCTTTTTACAATAATGCAGGGGGACAGACTAGTATCAGGTAACTTCTAACTGACTCTGAAACTTATAATAAAAAGATTTGTACATATATATCTTTTGTATCTATCTTGAAATCTACTAATGTGCATGGTGGATGTTAACTTCATATCATTGATTAGTATGCTCGTCTCCCCTCCCCTTTCAGTCTTTCCATTTCTTTTTGTAGTTGATGTGCTAGTGCAGACTTGTGATATTTTTTTATAAATAAAGGTCATACTGCACATACCTAGTCAATATCTAGAGTTCCTTACTTGATGACCAATGTCATAAGTGGTTCACTTCCTTACCTTCCAAGTTTTCACTCTCTGATGGGATTCCATGGATGGTAATGTAAAACTGGCTCCAGTGATCAGGAATTGGCTCATCAGTGAAGATGTGAATAACAAGTCAATTTGGGATTATTAAGCTGAAAATTGAAGTTCGATGTATTCAAGACTTGATTTTTCTCAATATATGCAGTGTCTAGAAATCAGATCTGTTGATTTTTAGTACTTCAGCATTAATATTAGGCCACGAGACAACCACTTCCACTTCTTTAGCTTATAGAACATTTTACAGTAAGTAAAGGTAGATCTTATCTACTATCCGTGTGACTAGTTTATAGCATAAATGCTTTCACGGACTTGGCAATTAGGGTATCTTCCTTTTAGACAATTCGTCTTGGTCTTAGGGTTGTAGCTTTTTGGAGAATTACTATATATGTCTCAGAAACCATATCTATTGAGGAAAAAGTTCTATTAGTTTTGAGAACACTAAAAATTCTTCTCTGCTTTGTTTAGAAAGAAACTAGGGAAATATGTGTCTTGTTTACATCTATGGGATTTTCTTTGAGCCGGATAGCACGTGAAGACAACAAATTTGAAGATCTCCATATATTTGGGCTCTACTACTGATGTTCATGAGTCTTGGGAGGCTGTAGCAGGCTTATGCTGTTGTCCAAATTTCCACTGTGATGTTTTGACACACTGCTGGCAAGATTTTATTGACTCTTAACCAAAAATGGAACAATATGTATCGGATACCCAGGTTGTAGGTTACAAGCAAAGTTATTCATTCAGATATTCATGGTTGGCATATTTTTTAAAGGGAACTGTCACGCCTTTAGGACCAGAAGGTGGCAGAGTGCCAAAGCTTGGTCTATTTGTTCGACAAGCTAAGTATGCTTGTATATTGCAGGATAGTCACGATGTATGCCTGTATGGAGGTGGGTACAAGGAATAACAGAGTGTTCTCTCAATTTATTATGAAATGTTTCTGGTTAGGGGGGAGAATGCATTTCCATATAGCTCGATTTAGATCTCAAAAAGTATAGAGAAAGGTGTGTTCTTTTTTTCTTTTCACTTGGCTAGCAGCAACAGGGGGTGATGTTGGCGGCTAAGAATTTGAGAAAGAGGAAGGTTGCTTATGTCAAAGGTGTTGACCATCTCTTCATTCACTGTTTGGCAATTTCGAGGTTATGGGGGGAAATCCTTAGTTGGTTTGGGCCAGTTTCGGTGATGCCACACACAGTGAAAGAGCTTATTTTCACTTGGAACTATGGTCACTATGATAAAAGAAGGAAAATATGTAGGGCTTGGAATGTTGTTCTACCAGCACTTATATGGATTATTTTAAGAGAGAATAAGAGAGCTTTGAGTGGGTAGAGATGAATTTTGTACATTGAGTATTACCCTCTATCCTTTATTTCGTTTCGGTGCACCCATGAAATTCCTTTATGTATTGATGACTTAATGTCTTTCGTAGAATTCCATTTATTTTTGTATGTTTTCTACTTTTTGGTATACATGTTGTATATGGGTGTTTTGTTTTTTGCTCAAACATCAATAAAAATTTATTGCTTCATCAAAAGATTATCTTCAGGCATGAGTAAAAGCCGAGTCAAACCTTCACTTTTTCTGTGGCCATTTTGGGGTTGGGGCTTGCTTCAATTTAGTGCCTCAAAAACTGAACTATTTAATGACTTTTAGATATACAAGGTCTATATCTCCGGAGGTTCTCGTAAATCACTCTTGTTCCCCTGGTTAAGCCTCATACTGTTTTTTTCTTTTGATAAAGTTAAAGTTGTATTCTTCAGCATTAAGGGTAAGCTGGCTACCTCCAAAAATTTACAAGCTAAATCCCGAATTACATAGATCCAAGGAAATCTACCAACTGTTCTACTTCTTCTATACCATCTTCTTTACACCAAAAAAATAACATGTTAATGCAATTTTCTTCAACTTTCTTCTCATGACACTTGAGGTTTCTTTCTCTCCAAATAGCCCACCAGACACAAGTAGGTACTATAGACCACCATTTTTTTTGGGTCTTTCCCCCTCTCTCCCTCATCCAAAAGCTCAAAGAATCAGCAGTATGTTTTGGCATCAAAAGATGCTGAGATAACAGTATGAGGTTAAGCCTCATACTGTTATCTCAGCATCTTTTGATACTGTGTACCTACTATGTATGAACTTATAGTTGCCATCATAATGTATATCTCATCTCCCATTTCATGATTTTTTGAAATGTGGAAAGGTCCTTCATGGTTTCTTTTGCTGGTTAGGCCATACTGGAGGTGCTATTTTCCTAATACTCAAGCTATAATCTACGTTGTCGACTCAAGTGACACTGATAGGCTCGTGGTTGCTAAAGAGGAGTTCCACGCCATATTGGAGGTACCTTTTCCTTATTGGTCTCTCTCACTCTCTATACGTATATGTATGTCTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATAAAATCTTCCTGCTTGTTGAAAATTAGGTTCCATTGTGACCAGTTGCTGCTAAATAGGACATATCTTTTTATTTTGGATCCAGACACTGAATGCTAAGTAAACTTGATTTATGAAAACAACGGCTATCGGCTAGTATTGCAAAAGAAATGCTTGTTCTTTACTCCTTTTCAATGTTTCCCTGTTAAGTGAAGGGATTCTGAACTCACAATAATACCCCCAAAATTGTCATTTCAGAATATACAGCACTTGTGAAACTACAAAATAGAAAGTTTACCAGAAGCATAAGGCAACAACAACAATATACTCAATATAATCCCATAAGGAGTTTGGGGAGGGTGGTGTGTACGCAGACCTTACCCCTACCTTGGGAAGGTAGATAGGTTGTTTCTGGAAAATTCTCGGTTTGAGTAAAGCAATTTAAAGCAAAAAGATGAATAAAACAATAGCGGTAGCAAATAGTACGATAATTAAAGCAAAAAGAAAACAACATATGCTAATAAAACTCAAAGAATAAGACAATATGGTAGTGATGATAAAGCAAAGGAAACCAGTAATAATAAAAAACTGAGAATAAGATAATAGGACAATATACTAATAATACTTATATGGGAAAGTCAGTTACTAACTTCAAATCCTCGACGGATTATGGTGCAAATAACATTCACCATGGTACCTCCCCTTGGATATGACACATCAATTATCCAACGCCAGGATAAATAAAAACAGGCTAAGAGCTGATCCCTGGTGTAACCCCATCACGATTGAGAATTGTTCAAAGTCTCTTCCTAGTGTCCTTACACGGATCTTGGCTCCTTTGTGCCATTGTTGTCAAAGCCGCGTTTAAAGGCACTTTTACTCTAAAGTGAGGTTCAAAACATGTTGAGCGCTTTGCTTCACTTAATGTGCACTTCAGTGTTGTGACAAGACATATTTTCTTGCCAATAAACGTTTCTTGAAGAAGTGACATCAAACAATCAAAAATTCACTTTATTGTTATTCTTTTCGTCCATATATTTGTTATTCATGAACGGAGCTTTAGTATAACTGGTAAAGTTGCTGCCATGTGACTAGGAGGTCATGTGTTCGAGCTGTGGAAACAACCTTGTGGTTCGGCCCTTCCTCGTACATGATGCATAGTGTAGCTTAGTCCACCGGACTGCCCTTTATATTTGTTTCATGCGTATAGTTATTATTCTTGGATTAAACAAACTTGTAGATGGTAGAAAATGAGGGGGGGGGGTGCGGAAGGGGATTGAAGATGATGAGAAAAATGACGGCGGAGAAAGAAGAAAATAATGGAGAGGGAAAGGAGACGTAAATGACGCAAAGGGGAGATGGAAGAGAAACAGATAAAATGGGGAGGGGGGATATATTCTGTAGAATTCTATGTTACCTTTATAAAAAAACAATATTCTGTAGGATTCTTTGAACATTTTTTTCCTTTTCATCACATTTTTGTTTTGGTATTCAAACTTATTTTAATTTTACATGTTACGTGGGTTTGATGTGTCATCCATGTCAGGGCAAGTGAGGAACACACAACATTGAAGGTGTTTAAAATATTTGTTTTGATTGAGTTGAGGTGTTTGGATGAAACTCTGGAGTAGAGGGGAGCTGCTTGTCAAAACAGGACAAGAGTGTTATTTGAAAAGCTGTTTTAGCAAAGTGATTTACAGAATAAGCAGTTCTTAGAATTGGCTCTACAGAGGTCTTCTATGACTTTGTTTTTTCTCAAAAGAACTTAATGTAAAAATTGTACATATTTTTTTGGTGGTGCAAGTTGATTGACAATGTTTTTCTTCTAGTTTTCTTTAAAGAAAATGGATGAAAGTAGACTTATATTCATATGGAAGGAATTGTCTCAAATATCCTATAATCTAATTCATGTAGATTTAGCGGAAGTTAAAACACAATGGGAGATAAGAATCTATAGAGGCGACGAAAATAAGTTTGAGATATGTTTTAGTCAAGTTAATATGTTTATCAATTAGTTTGGAATATGTTTTAGTCATGTTAATACATTTCCTTCAGGCCCCATGGTTTTTAGGAGTCTTTCAGCTTTGCCAGAGATTTATATACCAATAAAAATTATAGGGAACTTCTAATACTCTCTCTATTCCATATTAACTGAATTTTGGTTTTTTTTCTTCAAATAAGTGAAATGTTCCAAGTTCAAGATAAATGTTTGAACTTTTTTCCATTTTTGCCCTTCATTTACATTTATTAGGTGAAGTTCAAGAGAGTTAATTTCTCATATTTATGATTTTATTTTGAGTTATTTCTATATTCAGGAATAGTTTAACAATAACTTAAAGGGTAAATTGGAAAGTAATGTTCAATTTATGTCACTTTTCTTTTTAATGGATGTGCATTGTCTCACAAGTTCTCTTAATATGGAATAGAGGGAGTATTATTTGTTTTTATTTTATATAATATTGGTTTGAGATGAGTTGAACGGAGAAACATGGTTAGTGAGGTTATATAGCCGTCTCTACTTTGTTTGAGATTAGGTCTTTGCTGCTCTTCTGATGGAAGTCAAAATCTCTCCGAGTGATTTTTTAGTTGTGGTTACTCTGCTACCTGAAAGTGACATGTGTCCTTCAGTTGTATAGAGACTTGAAAATGGAAAGGTTGCCTGTACATGTTTTTTTTTTTTAAATTTTTCATGCTATAACTTTTGCTAAGTTGAAGAGCCATTTTGCTGCAAGTGGGGAATAATTTCAACTAATGATAGAATTGTATTTGTGTGGGTGCCAGAGATTCAACTTCTTAAGAGTTGTACAAATAGTAGAAATACAATTTGTTCTACCAGGAAGCCATCTATTTTTTTCCTTTTGATTCTTTTAATTTCTAGTTAAGCTTTCTGGGTCCTATCTTTTATTTGACTTCTGAGGAATAGCATTTACGATGTGTTTTACTTATGAGGATGGTCATTGATGATGCATGTTTCCTTTTTTTTTTCCCAGGAGGAAGAGTTGAAGGGTGCTGTTGTCCTCATCTATGCTAACAAGCAGGTTTGCGTCCTTGCTAGTTCTTTTTCTACATAGCTGAGAAAGAAGCTTTGATCCATTTGATCCTGGAATAAATACAATGTTTTCTTTCATTATTAAAGCCATAGTTTTGGGTTACTATTTAGAAGTATTAAAATTGCTACATAGTTCTTTTGCCTCTCAGAGTTTGCATGACAATGTAAGGATAGCCTGAGATTTATAGAACCTCTAGATTCAGAAAATCTCTAGTTTGTTTTAAAAGACAAACTATTGGTTATTGGACTGTAATCGGCCCAATGGAGTGCAATTGGAAATAGATGAGTCATTTAGCAGCCTCCAAATAGTTTGGATATTAAGCTGTAGTCGTTCTTTCTTTGGCCGACTTGCATTCTCTCTCTCTCATGCGTGTACGTCCGACACTGAAATACCAACCCACATATAGACTGACAGTAGCCGTTTGTTCAGATAAGCATGTAATCATTCACTATCATTTATTTAGAGTCTTCAATTGTTGACAGGATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGGCCTTAGAGCTGCACAAGATTAAAAGTAGGCAGTGGGCTATTTTTAAGACTTCTGCCATCAAAGGAGAAGGGCTCTTTGAGGGCTTGGACTGGTGAGCTCAACTTCTCACTTTTTTTTATATGTTGCTACAGCAATTATATGGCATGAATGCAAACCATATTTTTTGAAACTCTAGTTGATTCCACCGGTCGTACCAGTGTTCTCATTTGTCATTAAGTGGGCTCCTTGAAAAAAAAGGGCACTCTGGTGCCCAACATCTTGCGTTCATGTAAGGTCCTGGGAAGGGTCTCACCCTAAGGGGATGAAATGTAGGCAGCCTACCATGATTCAAGGATCAGTGGTAATTTTAGTCATTTAGCAGCCTCAACTTCTCTTCATTATCTTTGCTGATATCATATTTTGCATTTCTTTTCTGAAATGTCTTTCACATGACTTGAACACGCACACACTCAGATAAACCTATCGTTCTCATGTCGATTGTTCTAAATGTAGGTTGAGTAATACACTCAAATCCGGAGGTGGCTAAATTTTTGTAAACGATGCTGCAGATAAACTGTGAAGACAAACAAGAGAGAACTTGGTGTTAATGTGGCCTTCAATTATTTTTCTAATTGCCATAGTTTCTGATTAATGCGAACTGCTCGGATATAATGTTTATACTTATCACAGATAATGAGAATACGAGGCTTTATTTTGACTTCATAGATTACAATTTACACTTGAAAAGCTCAATGTTTCTTCT</genome_strand>
        <mrna_strand>CAAACACTAATCAAGTTCCCAAATCAGCTG..............................................................................................................................................AAAAGCAAGCGAAAGGGGGGAAATGGGATTAGTGTTTTCACGATTGTTTTCTTCGTTATTTGGAAACAAGGAAGCTCGGATCTTAGTTCTTGGACTTGACAATGCTGGCAAAACAACAATTCTCT..................................................................................................................ATCGTCTTCAGATGGGTGAAGTAGTTTCCACTATACCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGGATTTAATGTTGAGACGGTGCAGTATAACAATATAAAGTTTCAAGTTTGGGATCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGACAGACTAGTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATACTGGAGGTGCTATTTTCCTAATACTCAAGCTATAATCTACGTTGTCGACTCAAGTGACACTGATAGGCTCGTGGTTGCTAAAGAGGAGTTCCACGCCATATTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGAGTTGAAGGGTGCTGTTGTCCTCATCTATGCTAACAAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGGCCTTAGAGCTGCACAAGATTAAAAGTAGGCAGTGGGCTATTTTTAAGACTTCTGCCATCAAAGGAGAAGGGCTCTTTGAGGGCTTGGACTG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTAATACACTCAAATCCGGAGGTGGCTAAATTTTTGTAAACGATGCTGCAGATAAACTGTGAAGACAAACAAGAGAGAACTTGGTGTTAATGTGGCCTTCAATTATTTTTCTAATTGCCATAGTTTCTGATTAATGCGAACTGCTCGGATATAATGTTTATACTTATCACAGATAATGAGAATACGAGGCTTTATTTTGACTTCATAGATTACAATTTACACTTGAAAAGCTCAATGTTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9104-3" ref_strand="-" ref_description="SGN-M9104-3 C2_At5g57655-3 [cosii_markers]">
      <seq>tcaatggacattactaaatgaccaaagcctcaggaccaacaaaacaccagtatgactgggatgctgcaacttctgctaatttcttacgcaaatacgggcttataggagagttcaaattaaacatcgagtgcaaccatgccactttggctggtcacagctgccatcatgagcttgaaacagcaagaattaacggtttgctgggcaacattgacgcaaattctggcgatccccagattggttgggacacagatcagtttttgatggatgttgctgaggcaacattggtgatgcaaaccgttattaaaaatggaggattggcaccaggaggattcaactttgatgcaaaattgcggagggagagcaccgatgttgaagacctatttattgcccacattgctggtatggacactctagcccgtggcctcagaaatgctgccaagctaattgaggatggctcattgagtgatctcgtcagaaagcgatatcagagttttgactccgaacttggtgctgcaattgagtctgggaaggcagactttgaactgctcgagaagaaggcgctagaatggggagaacctaaagttccttctggaaagcaggagcttgcagagatgatttttcagtcagcattgtagaaatcagagttttatactttttagcagcagcagtaggaaataatattatcatcatggataggaagaaaaattgagaaataaatattttacatattctgtgtatgggtttcccagtgaattttttagtaaactgattatgcagaaagttgaatgtttattacccccacttcaatgactaccaggcttctgaatatttttttttaaaaaaaaaaaaaaaaaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLf0014I11.1" temp_strand="-" temp_description="C07SLf0014I11.1  AC236764.1 htgs_phase:2 submitted_to_sgn_as:gi|238909041|gb|AC236764.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0014I11, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces">
        <position start="48839" stop="25849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48701" g_stop="48696" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48695" i_stop="48535" i_length="161">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48534" g_stop="48489" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="49" r_length="43" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48488" i_stop="48408" i_length="81">
            <donor d_prob="0.984" d_score="0.91"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48407" g_stop="48352" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="105" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48351" i_stop="48231" i_length="121">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48230" g_stop="48179" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="157" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48178" i_stop="48106" i_length="73">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48105" g_stop="48026" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="237" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48025" i_stop="47927" i_length="99">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47926" g_stop="47856" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="308" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47855" i_stop="47744" i_length="112">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47743" g_stop="47703" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="349" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47702" i_stop="47319" i_length="384">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47318" g_stop="47219" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="449" r_length="100" r_score="0.950"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47218" i_stop="47120" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="47119" g_stop="47048" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="521" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="47047" i_stop="46953" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46952" g_stop="46875" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="599" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="46874" i_stop="46519" i_length="356">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="46518" g_stop="46264" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="839" r_length="240" r_score="0.859"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="46263" i_stop="45777" i_length="487">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.219" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="45776" g_stop="45746" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="840" r_stop="869" r_length="30" r_score="0.645"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0014I11.1" gen_strand="-" ref_id="SGN-M9104-3" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0014I11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9104-3" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48701" e_stop="48696"/>
          <exon e_start="48534" e_stop="48489"/>
          <exon e_start="48407" e_stop="48352"/>
          <exon e_start="48230" e_stop="48179"/>
          <exon e_start="48105" e_stop="48026"/>
          <exon e_start="47926" e_stop="47856"/>
          <exon e_start="47743" e_stop="47703"/>
          <exon e_start="47318" e_stop="47219"/>
          <exon e_start="47119" e_stop="47048"/>
          <exon e_start="46952" e_stop="46875"/>
          <exon e_start="46518" e_stop="46264"/>
          <exon e_start="45776" e_stop="45746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGGTATTTCAACTTAACTTGTTCTAATATTGTAGAATTTAATTTTCTGCCATGGAGTTCAAAATTTTAATAGAAGTGTAAAATACTCTGATTTGACATCTTGTGTACCTCGCCAATCTTATTAGTTGTAAGTTAACCTCACACGTTATTTGATTTAATTCCAGGAACATTACTAATTGAACCAAAGCCTCAGGAGCCAACAAAACACCAGTATGTTTACTTTACGTGATGCATCTGCTGAGAATGTAATCTCCTAAATTTTTACCTAATTTATTCATCATATTAATCTAGGTATGACTGGGATGCTGCCACTTCTGCTAATTTCTTACGCAAATATGGGCTTATAGGTATTTAATTCATTCTTCATTTCCTTCATAGTGCATTTTCAAAGAAGTGGCATAGGAGCTTTGTTACTACATGTTCGAATAAGAGGGAATCATAATGATTTTCATTTTGCGTTTTCTGCAGGAGAGTTCAAATTGAACATCGAGTGCAACCATGCCACGTTGGCTGGTCACAGGTTTGTGTGTTTTCAGTGCAAATTAACTATGTCCGTCTTTTGCACCTTATTAAAACAAATTATTGTTTTGCAGCTGCCATCATGAGCTTGAAACAGCAAGAATTAATGGTTTGCTGGGCAACATTGACGCAAATTCTGGCGATCCCCAGATTGGTATGTTACGTGGAAATATGAGAATACATATCAAATATGTCAATGTGATTGCTATAATACCATGAGACTTGAAGTAATGAAAGCTTATCCATTATGTAGGTTGGGACACAGATCAATTTTTGATGGATGTCGCTGAGGCAACATTGGTGATGCAAACCGTTATTAAAAATGTCAGTGATTAGACAATTTCTTTTTGATTGTTACGAAACTGAAAACTGTGAATCAGCTAAAAAAAAGTCGTGCAATTCTTAATTTTTAACCGCTGATCGTTGTTTTGAACAGGGAGGATTGGCACCAGGAGGATTCAACTTTGATGCAAAATTGTTAGTTCCCTACTCCACTATTACCTTTTGTTTCCATCTCGAATATTTGACTTCAATTATAATGTTACCTATCATATGTTACAAATCTTAGACAGTAACGAATTAGTCAATATCATTCAAGTATGTCTCGATCCCAAGCTAGTTGTGATTGGCCAGACAGAGAAACTAATCCAAAGACAATACTTGTTTTGTTGTCCATCATATGAAAAAAAAAATATTTTGAAGGCTTGGGGATGATGTTTTTTGTTCCTCCTAATAGGCGTAGGGAGAGCACTGATGTTGAAGACATATTTATTACTCACATAAACTTGTTTTGTTGTCCGTCATATGAAAAAAAATATATTTTGAAGGCTTGGGGATGATGTTTTTTGTTCCTCCTAATAGGCGTAGGGAGAGCACTGATATTGAAGACATATTTATTGCTCACATTGCTGGTATGGACACTCTAGCCCGTGGCCTCAGAAATGCTGCCAAGCTAATTGAGGTGCTGTTCCTTTCTCAACTACTTGCCAAATTTTCAATCAACTAATATTACCGAATCAAATATGCAATGGTGTACTTAATTTTCTGTGTTTGCAAACAGGAGGGCTCGTTGAATGATCTTGTCAGAAAGCGATATCAGAGTTTTGACTCCGAACTTGGTTCTGCAATTGAGGTATTGTTTTACTATCACCTTTTCGTTTTCCATCTGCTGTCTACTGTGTTCTGTTCACTAAACGCTTGAGAGTAAAACTACGTGTTCTCCAACAGTCTGGGAAGGCAGACTTTGAACTGCTCGAGAAGAAGGCGCTAGAATGGGGAGAACCTAAAGTTCCTTCTGGAAAGCAGGTAACATTTTATAGACTTACAATGTTCACTTGCCATAAATAATATTTCATTATTTGCAAATACTCAAGTTTAGTATTAACGAATGGCGTTCTGATCATCATTATTACAAATACTGTTCACTTCACTATTTGAAATACCAGTGAAATCTTGAAAAACTTGTTTAGTATTATTTCAAGTGAAATTTACTGTTGAAACGTGAGTTATCTTTCGAATACTCTTTCTCAACTTGAACGTTAAATACGTTTTCTTTTTAAACCTTCAACAAAACACTGTCATCTAGTATGCACATATCTGGAACTTATTCTTCTGTGTGTGATGTTAGTTTAAATTATTTTGTTTGGTTCAAAAAAATGCAGGAGCTTGCAGAGATGATTTTTCAGTCAGCATTGTAGAAATCATGAGTTTTATACTTTTTTTAGCAGGCAGCAGCAGCAGCAGTAGGAAATAATATTATCATGAGTAGGAAGAAAAATTTAGAAATAAATATTTTACATATTCAGTGTGTGGGCTGTTTCCCAGTGAATTTTTCAGTGAACTAATTATTCAGAAAGTTGAATGTTTATTATCCCTACATCAATGACTAGCATGCTTCTGAATATTTTTTCAATACAATTTAACTTTTTATCTATCGACGGTTGTTTAGACTGATTCTTTCTAAAATCTCAAACAAAGTAAGGGTTGGCTACTTGAGTCGCTTCATTTGAGAGTGTGTGCCATAGTCCTAGTTGTATCCTAATTTAGGGATCAATTATTTGAATTTTTGCTATCAATGTCGATATATTTAAAGTCAATTAAATATATCGCCTATATATATTTTTTTCTTTCCGTTTGATTTCTCTGTTATTTTATCCTCTTTGTGTTACACACACATTCTTCATTTTCTAATTTATAATATTGTTTTGGTCTAAAAATCTTCCTTTTTTAATGATCATTCTGTTCAATTCATCTATGAGGTGTGCTGTATTGTCCAAGAATACCAAATATTTGTCAACTTTACCAACTTGTTTTTTCTAGCTTGCAAACACCATTGTTTATGGAATATAACTATATGTTTAAAATCAAAGACCAAAGACAATTGACAAAATATAACCAAAACAGGAAAGAAAAACAGAAGAAACATTGAGCTTTT</genome_strand>
        <mrna_strand>TCAATG.................................................................................................................................................................G-ACATTACTAAATG-ACCAAAGCCTCAGGA-CCAACAAAACACCA.................................................................................GTATGACTGGGATGCTGCAACTTCTGCTAATTTCTTACGCAAATACGGGCTTATAG.........................................................................................................................GAGAGTTCAAATTAAACATCGAGTGCAACCATGCCACTTTGGCTGGTCACAG.........................................................................CTGCCATCATGAGCTTGAAACAGCAAGAATTAACGGTTTGCTGGGCAACATTGACGCAAATTCTGGCGATCCCCAGATTG...................................................................................................GTTGGGACACAGATCAGTTTTTGATGGATGTTGCTGAGGCAACATTGGTGATGCAAACCGTTATTAAAAAT................................................................................................................GGAGGATTGGCACCAGGAGGATTCAACTTTGATGCAAAATT................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGGAGAGCACCGATGTTGAAGACCTATTTATTGCCCACATTGCTGGTATGGACACTCTAGCCCGTGGCCTCAGAAATGCTGCCAAGCTAATTGAG...................................................................................................GATGGCTCATTGAGTGATCTCGTCAGAAAGCGATATCAGAGTTTTGACTCCGAACTTGGTGCTGCAATTGAG...............................................................................................TCTGGGAAGGCAGACTTTGAACTGCTCGAGAAGAAGGCGCTAGAATGGGGAGAACCTAAAGTTCCTTCTGGAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................GAGCTTGCAGAGATGATTTTTCAGTCAGCATTGTAGAAATCA-GAGTTTTATAC--TTTTTAGCA-GCAGCAGTAG--G-A--A-ATAATATTATCATCATGGATAGGAAGAAAAATTGAGAAATAAATATTTTACATATTCTGTGTAT-GG--GTTTCCCAGTGAATTTTTTAGTAAACTGATTATGCAGAAAGTTGAATGTTTATTACCCCCACTTCAATGACTACCAGGCTTCTGAATATTTTTT-TTTA-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAC-TCGAGACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9104-2" ref_strand="+" ref_description="SGN-M9104-2 C2_At5g57655-2 [cosii_markers]">
      <seq>ttttttgtactatatatacactctgttgctagcatagatttgtgtgaagctagagtttttctgtttctttagccaagaaacctaaaaacccatctcagattttgcactgatttgacaaaaatgagagaaaggaatgttgggaagtgttcgttattccttctttgtttgaatgtggtctcaagtgtagtgatggctgctgctccaccaacttgtcctgctgatactggcagcggttgtgggagtgattcaggtgaatgggatggggagtttttccctggaattccaaaaattaagtatgagggtccttctagtaagaacccactctcctttaaatggtacaatgccgaggaggaggttcttggagaaaagatgaaggattggatgagatttagcgtagcattttggcatacattccgtggcacaggagctgatccatttggtgctcctacaaagtcgtggccgtgggaagatggcaccaattccctggctatggccaagagaagactgagagccaactttgaattcctggagaaacttggagtagaaagatggtgcttccacgatagggacatcgctccagagggaaagacccttgaggaaacaaatgcaaacttggatgaagtggtggctcttgccaaagagcttcagggagataaatttcatcttctgtggggtaccgctcaattgttcctccagcctcgctacatgcatggtgctgctactagctctgaattaggtgtatatgcatatgctgctgctcaggtcaagaaagccatggaggttacacatcatcttgggggagagaattatgtcttttggggtggtcgagaaggttaccagagcctcctgaacacagatatggaaagagaacttaaccatatggcaaggttcatggaagctgctgtcgcttacaaaaagaagattggcttcaatggaacattactaattgaaccaaagcctcaggagccaacaaaacaccagtatgactgggatgctgccacttctgctaatttcttacgcaaatatgggcttataggagagttcaaattgaacatcgagtgcaaccatgccacgttggctggtcacagctgccatcatgagcttgaaacagcaagaattaatggtttgctgggcaacattgacgcaaattctggcgatccccagattggttgggacacagatcaatttttgatggatgtcgctgaggcaacattggtgatgcaaaccgttattaaaaatggaggattggcaccaggaggattcaactttgatgcaaaattgcgtagggagagcactgatattgaagacatatttattgctcacattgctggtatggacactctagcccgtggcctcagaaatgctgccaagctaattgaggagggctcgttgaatgatcttgtcagaaagcgatatcagagttttgactccgaacttggttctgcaattgagtctgggaaggcagactttgaactgctcgagaagaaggcgctagaatggggagaacctaaagttccttctggaaagcaggagcttgcagagatgatttttcagtcagcattgtagaaatcatgagttttatactttttttagcaggcagcagcagcagcagtaggaaataatattatcatgagtaggaagaaaaatttagaaataaatattttacatattcagtgtgtgggctgtttcccagtgaatttttcagtgaactaattattcagaaagttgaatgtttattatccctacatcaatgactagcatgcttctgaatattttttcaatacaatttaactttttatctaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLf0014I11.1" temp_strand="-" temp_description="C07SLf0014I11.1  AC236764.1 htgs_phase:2 submitted_to_sgn_as:gi|238909041|gb|AC236764.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0014I11, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces">
        <position start="51922" stop="45947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51622" g_stop="51514" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51513" i_stop="50892" i_length="622">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50891" g_stop="50812" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="189" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50811" i_stop="50659" i_length="153">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50658" g_stop="50548" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="300" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50547" i_stop="50444" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50443" g_stop="50369" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="375" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50368" i_stop="50290" i_length="79">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50289" g_stop="50160" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="505" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50159" i_stop="50081" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50080" g_stop="49989" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="597" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49988" i_stop="49744" i_length="245">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49743" g_stop="49693" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="648" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49692" i_stop="49430" i_length="263">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49429" g_stop="49353" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="725" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="49352" i_stop="49273" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="49272" g_stop="49218" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="780" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="49217" i_stop="49084" i_length="134">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="49083" g_stop="48982" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="882" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="48981" i_stop="48748" i_length="234">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="48747" g_stop="48696" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="883" r_stop="934" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="48695" i_stop="48535" i_length="161">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="48534" g_stop="48489" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="935" r_stop="980" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="48488" i_stop="48408" i_length="81">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="48407" g_stop="48352" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="981" r_stop="1036" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="48351" i_stop="48231" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="48230" g_stop="48179" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1037" r_stop="1088" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="48178" i_stop="48106" i_length="73">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="48105" g_stop="48026" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1089" r_stop="1168" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="48025" i_stop="47927" i_length="99">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="47926" g_stop="47856" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1169" r_stop="1239" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="47855" i_stop="47744" i_length="112">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="47743" g_stop="47703" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1240" r_stop="1280" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="47702" i_stop="47319" i_length="384">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="47318" g_stop="47219" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1281" r_stop="1380" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="47218" i_stop="47120" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="47119" g_stop="47048" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1381" r_stop="1452" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="19">
          <gDNA_intron_boundary i_start="47047" i_stop="46953" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="20">
          <gDNA_exon_boundary g_start="46952" g_stop="46875" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1453" r_stop="1530" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="20">
          <gDNA_intron_boundary i_start="46874" i_stop="46519" i_length="356">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="21">
          <gDNA_exon_boundary g_start="46518" g_stop="46248" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1531" r_stop="1801" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1802" polyA_stop="1820"/>
      <MATCH_line gen_id="C07SLf0014I11.1" gen_strand="-" ref_id="SGN-M9104-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1801</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0014I11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9104-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51622" e_stop="51514"/>
          <exon e_start="50891" e_stop="50812"/>
          <exon e_start="50658" e_stop="50548"/>
          <exon e_start="50443" e_stop="50369"/>
          <exon e_start="50289" e_stop="50160"/>
          <exon e_start="50080" e_stop="49989"/>
          <exon e_start="49743" e_stop="49693"/>
          <exon e_start="49429" e_stop="49353"/>
          <exon e_start="49272" e_stop="49218"/>
          <exon e_start="49083" e_stop="48982"/>
          <exon e_start="48747" e_stop="48696"/>
          <exon e_start="48534" e_stop="48489"/>
          <exon e_start="48407" e_stop="48352"/>
          <exon e_start="48230" e_stop="48179"/>
          <exon e_start="48105" e_stop="48026"/>
          <exon e_start="47926" e_stop="47856"/>
          <exon e_start="47743" e_stop="47703"/>
          <exon e_start="47318" e_stop="47219"/>
          <exon e_start="47119" e_stop="47048"/>
          <exon e_start="46952" e_stop="46875"/>
          <exon e_start="46518" e_stop="46248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTACTATATATACACTCTGTTGCTAGCATAGATTTGTGTGAAGCTAGAGTTTTTCTGTTTCTTTAGCCAAGAAACCTAAAAACCCATCTCAGATTTTGCACTGGTAAGCCTTTTATCTCTTTAATCGTTCTTGTTTTTGCCGATTACATGTTGGGTTTTCATAATTTTGATAAAAATTGGAGCTTTTTGGTGATTTTTTGATTTGTTATGGATGTAAAGTTATGATCTTTGGAGTATTTATGTTGAGATCAGTGAAGGGTATGAGCTGAATTTTGTTTCTGGTGATGATCTTTTGGTTACATGAGATTGGTGATATTGTAGATTAGTGATGGTATAAATTACTTAAAAGTTCTTGATTGGATTATCTTCGATTTTTAGATGGATATGTAAGTGTAACTTCTGATTATAAGTTTTTTCTTTTTGGAGATTAATAGGGGGGTGGGGATGGGGCTGTTATATTGATTATATGGTGATGATTATTTAACTATTGGCTGATGTTTTGTGATTAATGGTGTTGCTAAAAATTGGAGATTTTTCTTCTTCTATGTTTTAAAAAAATTGATTGTTATGGGTGTAAAGTTTTGATCTTTGAAGTATTTTTGTTGAGAACTACTCAAGGATGGGGTGTGGAGGCTCGAGTAATTAATGGGATTTGAGAACTCTTTGAATTACAGATTTTAACGTTTAGTGATTAATGGAGTTGTTTATTATCTTGTGCATTGCAGATTTGACAAAAATGAGAGAAAGGAATGTTGGGAAGTGTTCGTTATTCCTTCTTTGTTTGAATGTGGTCTCAAGTGTAGTGGTAAGCAAATCAACGGTTCTTCGTTAGTATGATTGTCATGTCTAATTATGACCAATGCATATTTTTCTGAGTTCTTTAATTTTTTTTTTTCAATTATGTTATTATGAAAAAGTATATGTCTCATAATGTACGTCCGTGTCATCCCAAATGCAGATGGCTGCTGCTCCACCAACTTGTCCTGCTGATACTGGCAGCGGTTGTGGGAGTGATTCAGGTGAATGGGATGGGGAGTTTTTCCCTGGAATTCCAAAAATTAAGTATGAGGTAATAATACTAATATATAACCCTTTAGTTACAGAAATTTGAAGTATTGAACTTGTTAGTGAATTTGGATATGTTATTTGACCGAATTTTAATTGCTAATTTAGGGTCCTTCTAGTAAGAACCCACTCTCCTTTAAATGGTACAATGCCGAGGAGGAGGTTCTTGGAGAAAAGATGAAGGTTAGTTGTGATCACTTGTTTTAGGATTCTTGGCAAAAACTATATGATTTTGTACTTATAAATTTTTTGTTTGATATAGGATTGGATGAGATTTAGCGTAGCATTTTGGCATACATTCCGTGGCACAGGAGCTGATCCATTTGGTGCTCCTACAAAGTCGTGGCCGTGGGAAGATGGCACCAATTCCCTGGCTATGGCCAAGAGAAGACGTGAGTTCATAGATTACCAACTCTAATTTCTAAGTAGTTTTGGATAGAACTTATTTCTCACGCTATTACTAATTTACAGTGAGAGCCAACTTTGAATTCCTGGAGAAACTTGGAGTAGAAAGATGGTGCTTCCACGATAGGGACATCGCTCCAGAGGGAAAGACCCTTGAGGTAAATTTTGAGAGAATGCTATGCTTCTAGTGCTTTTATTCTGCATCCCCATCCCAGTAATAAAGTGGATTGACAAAGGTCATGTCTGATTGTTGAATCAGCTGTGTTTAATGTTCATAAACCTCTTATCCCCCCCCCCCATTTACTTCTAAATGCTGATGGATCTTCCATCTTTTATGAGCATAAAATCTTTGTTATCCCGAAAGAATCTGACATTAAATCAAAATATATGGTTTGTGTTATAGGAAACAAATGCAAACTTGGATGAAGTGGTGGCTCTTGCCAAAGAGCTTCAGGTAATAATTAGTTATTAGTTTGATGAACAATTAAGTTGTAAACCAACTATCATAACTTTTTTCCGACAGAAAATGAATTTTCCTTCTGCTCTCTCACATTTTCTGATGCCTTGAGGTATCTGATACCAGTTTTACTAGTTCACCTTGTTATGTTTTGTCAAATGTTCTCCTAAGAACCACCTAAGGCACAAGTATGATTTACTGTGCTAACATGATAAGTTGACATTTCATCTTGAATACTTCCCTCTATGTGGATTTTACAGGGAGATAAATTTCATCTTCTGTGGGGTACCGCTCAATTGTTCCTCCAGCCTCGCTACATGCATGGTGCTGCTACTAGGTATGCATTGGTACAGAATTGCCTTTGATTCACCCTGTATATGAAAAGAGTGCTCATGCTCTGTAAATGTTGAATTGTAGCTCTGAATTAGGTGTATATGCATATGCTGCTGCTCAGGTCAAGAAAGCCATGGAGGTTCGAACTTCTGCTTTCCTCCTTTTGAGACTATTGTGAGATCACAATTGACGAGAAGTCTAATTACTTGAACAAATACAGTACTTAAAGTAGGATTTGCTTGAACAGTACCTTTGCGTGTGTCTCATTTTCAGGTTACACATCATCTTGGGGGAGAGAATTATGTCTTTTGGGGTGGTCGAGAAGGTTACCAGAGCCTCCTGAACACAGATATGGAAAGAGAACTTAACCATATGGTGAGATTGTCACCTTAATACTTATCAGCAAAATTCAGAAATGTTAATTTCACAATTAACATATTTTCTCTTGTAATCAAGTTAAAAACCCATCCTATGGTATTTATCCCATCATTCTTTGTGTGCTTTGAGGGTGTTTGGGCCCAATTCAGAAGAGAGTATATGCCACTGGATTTCTTTATTTTGTTTAAGATTGCTTACTGTACTGAGAAAATGTGTTTTAACTCCTTGCAGGCAAGGTTCATGGAAGCTGCTGTCGCTTACAAAAAGAAGATTGGCTTCAATGGTATTTCAACTTAACTTGTTCTAATATTGTAGAATTTAATTTTCTGCCATGGAGTTCAAAATTTTAATAGAAGTGTAAAATACTCTGATTTGACATCTTGTGTACCTCGCCAATCTTATTAGTTGTAAGTTAACCTCACACGTTATTTGATTTAATTCCAGGAACATTACTAATTGAACCAAAGCCTCAGGAGCCAACAAAACACCAGTATGTTTACTTTACGTGATGCATCTGCTGAGAATGTAATCTCCTAAATTTTTACCTAATTTATTCATCATATTAATCTAGGTATGACTGGGATGCTGCCACTTCTGCTAATTTCTTACGCAAATATGGGCTTATAGGTATTTAATTCATTCTTCATTTCCTTCATAGTGCATTTTCAAAGAAGTGGCATAGGAGCTTTGTTACTACATGTTCGAATAAGAGGGAATCATAATGATTTTCATTTTGCGTTTTCTGCAGGAGAGTTCAAATTGAACATCGAGTGCAACCATGCCACGTTGGCTGGTCACAGGTTTGTGTGTTTTCAGTGCAAATTAACTATGTCCGTCTTTTGCACCTTATTAAAACAAATTATTGTTTTGCAGCTGCCATCATGAGCTTGAAACAGCAAGAATTAATGGTTTGCTGGGCAACATTGACGCAAATTCTGGCGATCCCCAGATTGGTATGTTACGTGGAAATATGAGAATACATATCAAATATGTCAATGTGATTGCTATAATACCATGAGACTTGAAGTAATGAAAGCTTATCCATTATGTAGGTTGGGACACAGATCAATTTTTGATGGATGTCGCTGAGGCAACATTGGTGATGCAAACCGTTATTAAAAATGTCAGTGATTAGACAATTTCTTTTTGATTGTTACGAAACTGAAAACTGTGAATCAGCTAAAAAAAAGTCGTGCAATTCTTAATTTTTAACCGCTGATCGTTGTTTTGAACAGGGAGGATTGGCACCAGGAGGATTCAACTTTGATGCAAAATTGTTAGTTCCCTACTCCACTATTACCTTTTGTTTCCATCTCGAATATTTGACTTCAATTATAATGTTACCTATCATATGTTACAAATCTTAGACAGTAACGAATTAGTCAATATCATTCAAGTATGTCTCGATCCCAAGCTAGTTGTGATTGGCCAGACAGAGAAACTAATCCAAAGACAATACTTGTTTTGTTGTCCATCATATGAAAAAAAAAATATTTTGAAGGCTTGGGGATGATGTTTTTTGTTCCTCCTAATAGGCGTAGGGAGAGCACTGATGTTGAAGACATATTTATTACTCACATAAACTTGTTTTGTTGTCCGTCATATGAAAAAAAATATATTTTGAAGGCTTGGGGATGATGTTTTTTGTTCCTCCTAATAGGCGTAGGGAGAGCACTGATATTGAAGACATATTTATTGCTCACATTGCTGGTATGGACACTCTAGCCCGTGGCCTCAGAAATGCTGCCAAGCTAATTGAGGTGCTGTTCCTTTCTCAACTACTTGCCAAATTTTCAATCAACTAATATTACCGAATCAAATATGCAATGGTGTACTTAATTTTCTGTGTTTGCAAACAGGAGGGCTCGTTGAATGATCTTGTCAGAAAGCGATATCAGAGTTTTGACTCCGAACTTGGTTCTGCAATTGAGGTATTGTTTTACTATCACCTTTTCGTTTTCCATCTGCTGTCTACTGTGTTCTGTTCACTAAACGCTTGAGAGTAAAACTACGTGTTCTCCAACAGTCTGGGAAGGCAGACTTTGAACTGCTCGAGAAGAAGGCGCTAGAATGGGGAGAACCTAAAGTTCCTTCTGGAAAGCAGGTAACATTTTATAGACTTACAATGTTCACTTGCCATAAATAATATTTCATTATTTGCAAATACTCAAGTTTAGTATTAACGAATGGCGTTCTGATCATCATTATTACAAATACTGTTCACTTCACTATTTGAAATACCAGTGAAATCTTGAAAAACTTGTTTAGTATTATTTCAAGTGAAATTTACTGTTGAAACGTGAGTTATCTTTCGAATACTCTTTCTCAACTTGAACGTTAAATACGTTTTCTTTTTAAACCTTCAACAAAACACTGTCATCTAGTATGCACATATCTGGAACTTATTCTTCTGTGTGTGATGTTAGTTTAAATTATTTTGTTTGGTTCAAAAAAATGCAGGAGCTTGCAGAGATGATTTTTCAGTCAGCATTGTAGAAATCATGAGTTTTATACTTTTTTTAGCAGGCAGCAGCAGCAGCAGTAGGAAATAATATTATCATGAGTAGGAAGAAAAATTTAGAAATAAATATTTTACATATTCAGTGTGTGGGCTGTTTCCCAGTGAATTTTTCAGTGAACTAATTATTCAGAAAGTTGAATGTTTATTATCCCTACATCAATGACTAGCATGCTTCTGAATATTTTTTCAATACAATTTAACTTTTTATCT</genome_strand>
        <mrna_strand>TTTTTTGTACTATATATACACTCTGTTGCTAGCATAGATTTGTGTGAAGCTAGAGTTTTTCTGTTTCTTTAGCCAAGAAACCTAAAAACCCATCTCAGATTTTGCACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGACAAAAATGAGAGAAAGGAATGTTGGGAAGTGTTCGTTATTCCTTCTTTGTTTGAATGTGGTCTCAAGTGTAGTG.........................................................................................................................................................ATGGCTGCTGCTCCACCAACTTGTCCTGCTGATACTGGCAGCGGTTGTGGGAGTGATTCAGGTGAATGGGATGGGGAGTTTTTCCCTGGAATTCCAAAAATTAAGTATGAG........................................................................................................GGTCCTTCTAGTAAGAACCCACTCTCCTTTAAATGGTACAATGCCGAGGAGGAGGTTCTTGGAGAAAAGATGAAG...............................................................................GATTGGATGAGATTTAGCGTAGCATTTTGGCATACATTCCGTGGCACAGGAGCTGATCCATTTGGTGCTCCTACAAAGTCGTGGCCGTGGGAAGATGGCACCAATTCCCTGGCTATGGCCAAGAGAAGAC...............................................................................TGAGAGCCAACTTTGAATTCCTGGAGAAACTTGGAGTAGAAAGATGGTGCTTCCACGATAGGGACATCGCTCCAGAGGGAAAGACCCTTGAG.....................................................................................................................................................................................................................................................GAAACAAATGCAAACTTGGATGAAGTGGTGGCTCTTGCCAAAGAGCTTCAG.......................................................................................................................................................................................................................................................................GGAGATAAATTTCATCTTCTGTGGGGTACCGCTCAATTGTTCCTCCAGCCTCGCTACATGCATGGTGCTGCTACTAG................................................................................CTCTGAATTAGGTGTATATGCATATGCTGCTGCTCAGGTCAAGAAAGCCATGGAG......................................................................................................................................GTTACACATCATCTTGGGGGAGAGAATTATGTCTTTTGGGGTGGTCGAGAAGGTTACCAGAGCCTCCTGAACACAGATATGGAAAGAGAACTTAACCATATG..........................................................................................................................................................................................................................................GCAAGGTTCATGGAAGCTGCTGTCGCTTACAAAAAGAAGATTGGCTTCAATG.................................................................................................................................................................GAACATTACTAATTGAACCAAAGCCTCAGGAGCCAACAAAACACCA.................................................................................GTATGACTGGGATGCTGCCACTTCTGCTAATTTCTTACGCAAATATGGGCTTATAG.........................................................................................................................GAGAGTTCAAATTGAACATCGAGTGCAACCATGCCACGTTGGCTGGTCACAG.........................................................................CTGCCATCATGAGCTTGAAACAGCAAGAATTAATGGTTTGCTGGGCAACATTGACGCAAATTCTGGCGATCCCCAGATTG...................................................................................................GTTGGGACACAGATCAATTTTTGATGGATGTCGCTGAGGCAACATTGGTGATGCAAACCGTTATTAAAAAT................................................................................................................GGAGGATTGGCACCAGGAGGATTCAACTTTGATGCAAAATT................................................................................................................................................................................................................................................................................................................................................................................................GCGTAGGGAGAGCACTGATATTGAAGACATATTTATTGCTCACATTGCTGGTATGGACACTCTAGCCCGTGGCCTCAGAAATGCTGCCAAGCTAATTGAG...................................................................................................GAGGGCTCGTTGAATGATCTTGTCAGAAAGCGATATCAGAGTTTTGACTCCGAACTTGGTTCTGCAATTGAG...............................................................................................TCTGGGAAGGCAGACTTTGAACTGCTCGAGAAGAAGGCGCTAGAATGGGGAGAACCTAAAGTTCCTTCTGGAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................GAGCTTGCAGAGATGATTTTTCAGTCAGCATTGTAGAAATCATGAGTTTTATACTTTTTTTAGCAGGCAGCAGCAGCAGCAGTAGGAAATAATATTATCATGAGTAGGAAGAAAAATTTAGAAATAAATATTTTACATATTCAGTGTGTGGGCTGTTTCCCAGTGAATTTTTCAGTGAACTAATTATTCAGAAAGTTGAATGTTTATTATCCCTACATCAATGACTAGCATGCTTCTGAATATTTTTTCAATACAATTTAACTTTTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9104" ref_strand="+" ref_description="SGN-M9104 C2_At5g57655 [cosii_markers]">
      <seq>cggccgctcgcggccgctgctgttccttcaccctcgctacatgcatggtgctgctactagccctgaactaagcgtatatgcatatgctgccgctcaggtcaagaaagcgatggaggttacacattatcttgggggagaaaattatgtcttttggggcggtcgagaaggttaccagagcctcctaaacaccgatatggaaagagaacttgaccatatggcaaggttcatggaagctgctgttgcttacaaaaagaagattggcttcaagggcatattactaattgaaccaaagcctcaggagccaacgaaacaccagtatgactgggatgctgcaacatctgctaatttcttacgcaaatatgggcttataggagatttcaaattaaacatcgagtgcaaccacgctactttggctggtcacagctgccatcatgagcttgaaacagcaagaattaacggtttgctcggcaatattgacgcaaatactggcgatccccagatcggttgggacacagatcagtttttgatggatgtcgctgaagcaacattggtgatgcaaagcgttattaaaaatggaggattggcgccaggaggattcaacttcgacgcaaaattgcggagggagagcaccgatgttgatgacctatttattgctcacattgctggtatggacacactaccccgcggcctcagaaatgctgccaagctcatcgaggatggctcattgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLf0014I11.1" temp_strand="-" temp_description="C07SLf0014I11.1  AC236764.1 htgs_phase:2 submitted_to_sgn_as:gi|238909041|gb|AC236764.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0014I11, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces">
        <position start="49692" stop="46914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49392" g_stop="49353" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="60" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49352" i_stop="49273" i_length="80">
            <donor d_prob="0.996" d_score="0.95"/>
            <acceptor a_prob="0.926" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49272" g_stop="49218" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="115" r_length="55" r_score="0.891"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49217" i_stop="49084" i_length="134">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49083" g_stop="48982" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="217" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48981" i_stop="48748" i_length="234">
            <donor d_prob="0.966" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48747" g_stop="48696" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="269" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48695" i_stop="48535" i_length="161">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48534" g_stop="48489" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="315" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48488" i_stop="48408" i_length="81">
            <donor d_prob="0.984" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48407" g_stop="48352" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="371" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48351" i_stop="48231" i_length="121">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48230" g_stop="48179" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="423" r_length="52" r_score="0.904"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48178" i_stop="48106" i_length="73">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48105" g_stop="48026" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="503" r_length="80" r_score="0.938"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="48025" i_stop="47927" i_length="99">
            <donor d_prob="0.972" d_score="0.90"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="47926" g_stop="47856" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="574" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="47855" i_stop="47744" i_length="112">
            <donor d_prob="0.904" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="47743" g_stop="47703" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="615" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="47702" i_stop="47319" i_length="384">
            <donor d_prob="0.993" d_score="0.93"/>
            <acceptor a_prob="0.871" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="47318" g_stop="47219" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="715" r_length="100" r_score="0.900"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="47218" i_stop="47120" i_length="99">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="47119" g_stop="47104" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="731" r_length="16" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0014I11.1" gen_strand="-" ref_id="SGN-M9104" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0014I11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49392" e_stop="49353"/>
          <exon e_start="49272" e_stop="49218"/>
          <exon e_start="49083" e_stop="48982"/>
          <exon e_start="48747" e_stop="48696"/>
          <exon e_start="48534" e_stop="48489"/>
          <exon e_start="48407" e_stop="48352"/>
          <exon e_start="48230" e_stop="48179"/>
          <exon e_start="48105" e_stop="48026"/>
          <exon e_start="47926" e_stop="47856"/>
          <exon e_start="47743" e_stop="47703"/>
          <exon e_start="47318" e_stop="47219"/>
          <exon e_start="47119" e_stop="47104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCCTCCAGCCTCGCTACATGCATGGTGCTGCTACTAGGTATGCATTGGTACAGAATTGCCTTTGATTCACCCTGTATATGAAAAGAGTGCTCATGCTCTGTAAATGTTGAATTGTAGCTCTGAATTAGGTGTATATGCATATGCTGCTGCTCAGGTCAAGAAAGCCATGGAGGTTCGAACTTCTGCTTTCCTCCTTTTGAGACTATTGTGAGATCACAATTGACGAGAAGTCTAATTACTTGAACAAATACAGTACTTAAAGTAGGATTTGCTTGAACAGTACCTTTGCGTGTGTCTCATTTTCAGGTTACACATCATCTTGGGGGAGAGAATTATGTCTTTTGGGGTGGTCGAGAAGGTTACCAGAGCCTCCTGAACACAGATATGGAAAGAGAACTTAACCATATGGTGAGATTGTCACCTTAATACTTATCAGCAAAATTCAGAAATGTTAATTTCACAATTAACATATTTTCTCTTGTAATCAAGTTAAAAACCCATCCTATGGTATTTATCCCATCATTCTTTGTGTGCTTTGAGGGTGTTTGGGCCCAATTCAGAAGAGAGTATATGCCACTGGATTTCTTTATTTTGTTTAAGATTGCTTACTGTACTGAGAAAATGTGTTTTAACTCCTTGCAGGCAAGGTTCATGGAAGCTGCTGTCGCTTACAAAAAGAAGATTGGCTTCAATGGTATTTCAACTTAACTTGTTCTAATATTGTAGAATTTAATTTTCTGCCATGGAGTTCAAAATTTTAATAGAAGTGTAAAATACTCTGATTTGACATCTTGTGTACCTCGCCAATCTTATTAGTTGTAAGTTAACCTCACACGTTATTTGATTTAATTCCAGGAACATTACTAATTGAACCAAAGCCTCAGGAGCCAACAAAACACCAGTATGTTTACTTTACGTGATGCATCTGCTGAGAATGTAATCTCCTAAATTTTTACCTAATTTATTCATCATATTAATCTAGGTATGACTGGGATGCTGCCACTTCTGCTAATTTCTTACGCAAATATGGGCTTATAGGTATTTAATTCATTCTTCATTTCCTTCATAGTGCATTTTCAAAGAAGTGGCATAGGAGCTTTGTTACTACATGTTCGAATAAGAGGGAATCATAATGATTTTCATTTTGCGTTTTCTGCAGGAGAGTTCAAATTGAACATCGAGTGCAACCATGCCACGTTGGCTGGTCACAGGTTTGTGTGTTTTCAGTGCAAATTAACTATGTCCGTCTTTTGCACCTTATTAAAACAAATTATTGTTTTGCAGCTGCCATCATGAGCTTGAAACAGCAAGAATTAATGGTTTGCTGGGCAACATTGACGCAAATTCTGGCGATCCCCAGATTGGTATGTTACGTGGAAATATGAGAATACATATCAAATATGTCAATGTGATTGCTATAATACCATGAGACTTGAAGTAATGAAAGCTTATCCATTATGTAGGTTGGGACACAGATCAATTTTTGATGGATGTCGCTGAGGCAACATTGGTGATGCAAACCGTTATTAAAAATGTCAGTGATTAGACAATTTCTTTTTGATTGTTACGAAACTGAAAACTGTGAATCAGCTAAAAAAAAGTCGTGCAATTCTTAATTTTTAACCGCTGATCGTTGTTTTGAACAGGGAGGATTGGCACCAGGAGGATTCAACTTTGATGCAAAATTGTTAGTTCCCTACTCCACTATTACCTTTTGTTTCCATCTCGAATATTTGACTTCAATTATAATGTTACCTATCATATGTTACAAATCTTAGACAGTAACGAATTAGTCAATATCATTCAAGTATGTCTCGATCCCAAGCTAGTTGTGATTGGCCAGACAGAGAAACTAATCCAAAGACAATACTTGTTTTGTTGTCCATCATATGAAAAAAAAAATATTTTGAAGGCTTGGGGATGATGTTTTTTGTTCCTCCTAATAGGCGTAGGGAGAGCACTGATGTTGAAGACATATTTATTACTCACATAAACTTGTTTTGTTGTCCGTCATATGAAAAAAAATATATTTTGAAGGCTTGGGGATGATGTTTTTTGTTCCTCCTAATAGGCGTAGGGAGAGCACTGATATTGAAGACATATTTATTGCTCACATTGCTGGTATGGACACTCTAGCCCGTGGCCTCAGAAATGCTGCCAAGCTAATTGAGGTGCTGTTCCTTTCTCAACTACTTGCCAAATTTTCAATCAACTAATATTACCGAATCAAATATGCAATGGTGTACTTAATTTTCTGTGTTTGCAAACAGGAGGGCTCGTTGAATG</genome_strand>
        <mrna_strand>TGTTCCTTCACCCTCGCTACATGCATGGTGCTGCTACTAG................................................................................CCCTGAACTAAGCGTATATGCATATGCTGCCGCTCAGGTCAAGAAAGCGATGGAG......................................................................................................................................GTTACACATTATCTTGGGGGAGAAAATTATGTCTTTTGGGGCGGTCGAGAAGGTTACCAGAGCCTCCTAAACACCGATATGGAAAGAGAACTTGACCATATG..........................................................................................................................................................................................................................................GCAAGGTTCATGGAAGCTGCTGTTGCTTACAAAAAGAAGATTGGCTTCAAGG.................................................................................................................................................................GCATATTACTAATTGAACCAAAGCCTCAGGAGCCAACGAAACACCA.................................................................................GTATGACTGGGATGCTGCAACATCTGCTAATTTCTTACGCAAATATGGGCTTATAG.........................................................................................................................GAGATTTCAAATTAAACATCGAGTGCAACCACGCTACTTTGGCTGGTCACAG.........................................................................CTGCCATCATGAGCTTGAAACAGCAAGAATTAACGGTTTGCTCGGCAATATTGACGCAAATACTGGCGATCCCCAGATCG...................................................................................................GTTGGGACACAGATCAGTTTTTGATGGATGTCGCTGAAGCAACATTGGTGATGCAAAGCGTTATTAAAAAT................................................................................................................GGAGGATTGGCGCCAGGAGGATTCAACTTCGACGCAAAATT................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGGAGAGCACCGATGTTGATGACCTATTTATTGCTCACATTGCTGGTATGGACACACTACCCCGCGGCCTCAGAAATGCTGCCAAGCTCATCGAG...................................................................................................GATGGCTCATTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1390" ref_strand="+" ref_description="SGN-M1390 T0256 [cos_markers]">
      <seq>aaagtcgtggccgtgggaagatggcaccaattccctggctatggccaagagaagactgagagccaactttgaattcctggagaaacttggagtagaaagatggtgcttccacgatagggacatcgctccagagggaaagacccttgaggaaacaaatgcaaacttggatgaagtggtggctcttgccaaagagcttcagggagataaatttcatcttctgtggggtaccgctcaattgttcctccagcctcgctacatgcatggtgctgctactagctctgaattaggtgtatatgcatatgctgctgctcaggtcaagaaagccatggaggttacacatcatcttgggggagagaattatgtcttttggggtggtcgagaaggttaccagagcctcctgaacacagatatggaaagagaacttaaccatatggcaaggttcatggaagctgctgtcgcttacaaaaagaagattggcttcaatggaacattactaattgaaccaaagcctcaggagccaacaaaacaccagtatgactgggatgctgccacttctgctaatttcttacgcaaatatgggcttataggagagttcaaattgaacatcgagtgcaaccatgccacgttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0014I11-3QReo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLf0014I11.1" temp_strand="-" temp_description="C07SLf0014I11.1  AC236764.1 htgs_phase:2 submitted_to_sgn_as:gi|238909041|gb|AC236764.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0014I11, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces">
        <position start="50515" stop="47887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50215" g_stop="50160" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50159" i_stop="50081" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50080" g_stop="49989" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="148" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49988" i_stop="49744" i_length="245">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49743" g_stop="49693" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="199" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49692" i_stop="49430" i_length="263">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49429" g_stop="49353" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="276" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49352" i_stop="49273" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49272" g_stop="49218" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="331" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49217" i_stop="49084" i_length="134">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49083" g_stop="48982" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="433" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48981" i_stop="48748" i_length="234">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48747" g_stop="48696" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="485" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48695" i_stop="48535" i_length="161">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48534" g_stop="48489" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="531" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="48488" i_stop="48408" i_length="81">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="48407" g_stop="48352" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="587" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="48351" i_stop="48231" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="48230" g_stop="48187" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="631" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0014I11.1" gen_strand="-" ref_id="SGN-M1390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0014I11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50215" e_stop="50160"/>
          <exon e_start="50080" e_stop="49989"/>
          <exon e_start="49743" e_stop="49693"/>
          <exon e_start="49429" e_stop="49353"/>
          <exon e_start="49272" e_stop="49218"/>
          <exon e_start="49083" e_stop="48982"/>
          <exon e_start="48747" e_stop="48696"/>
          <exon e_start="48534" e_stop="48489"/>
          <exon e_start="48407" e_stop="48352"/>
          <exon e_start="48230" e_stop="48187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCGTGGCCGTGGGAAGATGGCACCAATTCCCTGGCTATGGCCAAGAGAAGACGTGAGTTCATAGATTACCAACTCTAATTTCTAAGTAGTTTTGGATAGAACTTATTTCTCACGCTATTACTAATTTACAGTGAGAGCCAACTTTGAATTCCTGGAGAAACTTGGAGTAGAAAGATGGTGCTTCCACGATAGGGACATCGCTCCAGAGGGAAAGACCCTTGAGGTAAATTTTGAGAGAATGCTATGCTTCTAGTGCTTTTATTCTGCATCCCCATCCCAGTAATAAAGTGGATTGACAAAGGTCATGTCTGATTGTTGAATCAGCTGTGTTTAATGTTCATAAACCTCTTATCCCCCCCCCCCATTTACTTCTAAATGCTGATGGATCTTCCATCTTTTATGAGCATAAAATCTTTGTTATCCCGAAAGAATCTGACATTAAATCAAAATATATGGTTTGTGTTATAGGAAACAAATGCAAACTTGGATGAAGTGGTGGCTCTTGCCAAAGAGCTTCAGGTAATAATTAGTTATTAGTTTGATGAACAATTAAGTTGTAAACCAACTATCATAACTTTTTTCCGACAGAAAATGAATTTTCCTTCTGCTCTCTCACATTTTCTGATGCCTTGAGGTATCTGATACCAGTTTTACTAGTTCACCTTGTTATGTTTTGTCAAATGTTCTCCTAAGAACCACCTAAGGCACAAGTATGATTTACTGTGCTAACATGATAAGTTGACATTTCATCTTGAATACTTCCCTCTATGTGGATTTTACAGGGAGATAAATTTCATCTTCTGTGGGGTACCGCTCAATTGTTCCTCCAGCCTCGCTACATGCATGGTGCTGCTACTAGGTATGCATTGGTACAGAATTGCCTTTGATTCACCCTGTATATGAAAAGAGTGCTCATGCTCTGTAAATGTTGAATTGTAGCTCTGAATTAGGTGTATATGCATATGCTGCTGCTCAGGTCAAGAAAGCCATGGAGGTTCGAACTTCTGCTTTCCTCCTTTTGAGACTATTGTGAGATCACAATTGACGAGAAGTCTAATTACTTGAACAAATACAGTACTTAAAGTAGGATTTGCTTGAACAGTACCTTTGCGTGTGTCTCATTTTCAGGTTACACATCATCTTGGGGGAGAGAATTATGTCTTTTGGGGTGGTCGAGAAGGTTACCAGAGCCTCCTGAACACAGATATGGAAAGAGAACTTAACCATATGGTGAGATTGTCACCTTAATACTTATCAGCAAAATTCAGAAATGTTAATTTCACAATTAACATATTTTCTCTTGTAATCAAGTTAAAAACCCATCCTATGGTATTTATCCCATCATTCTTTGTGTGCTTTGAGGGTGTTTGGGCCCAATTCAGAAGAGAGTATATGCCACTGGATTTCTTTATTTTGTTTAAGATTGCTTACTGTACTGAGAAAATGTGTTTTAACTCCTTGCAGGCAAGGTTCATGGAAGCTGCTGTCGCTTACAAAAAGAAGATTGGCTTCAATGGTATTTCAACTTAACTTGTTCTAATATTGTAGAATTTAATTTTCTGCCATGGAGTTCAAAATTTTAATAGAAGTGTAAAATACTCTGATTTGACATCTTGTGTACCTCGCCAATCTTATTAGTTGTAAGTTAACCTCACACGTTATTTGATTTAATTCCAGGAACATTACTAATTGAACCAAAGCCTCAGGAGCCAACAAAACACCAGTATGTTTACTTTACGTGATGCATCTGCTGAGAATGTAATCTCCTAAATTTTTACCTAATTTATTCATCATATTAATCTAGGTATGACTGGGATGCTGCCACTTCTGCTAATTTCTTACGCAAATATGGGCTTATAGGTATTTAATTCATTCTTCATTTCCTTCATAGTGCATTTTCAAAGAAGTGGCATAGGAGCTTTGTTACTACATGTTCGAATAAGAGGGAATCATAATGATTTTCATTTTGCGTTTTCTGCAGGAGAGTTCAAATTGAACATCGAGTGCAACCATGCCACGTTGGCT</genome_strand>
        <mrna_strand>AAAGTCGTGGCCGTGGGAAGATGGCACCAATTCCCTGGCTATGGCCAAGAGAAGAC...............................................................................TGAGAGCCAACTTTGAATTCCTGGAGAAACTTGGAGTAGAAAGATGGTGCTTCCACGATAGGGACATCGCTCCAGAGGGAAAGACCCTTGAG.....................................................................................................................................................................................................................................................GAAACAAATGCAAACTTGGATGAAGTGGTGGCTCTTGCCAAAGAGCTTCAG.......................................................................................................................................................................................................................................................................GGAGATAAATTTCATCTTCTGTGGGGTACCGCTCAATTGTTCCTCCAGCCTCGCTACATGCATGGTGCTGCTACTAG................................................................................CTCTGAATTAGGTGTATATGCATATGCTGCTGCTCAGGTCAAGAAAGCCATGGAG......................................................................................................................................GTTACACATCATCTTGGGGGAGAGAATTATGTCTTTTGGGGTGGTCGAGAAGGTTACCAGAGCCTCCTGAACACAGATATGGAAAGAGAACTTAACCATATG..........................................................................................................................................................................................................................................GCAAGGTTCATGGAAGCTGCTGTCGCTTACAAAAAGAAGATTGGCTTCAATG.................................................................................................................................................................GAACATTACTAATTGAACCAAAGCCTCAGGAGCCAACAAAACACCA.................................................................................GTATGACTGGGATGCTGCCACTTCTGCTAATTTCTTACGCAAATATGGGCTTATAG.........................................................................................................................GAGAGTTCAAATTGAACATCGAGTGCAACCATGCCACGTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="35003" PGL_stop="45765"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35003" e_stop="35081"/>
            <exon e_start="35205" e_stop="35356"/>
            <exon e_start="35471" e_stop="35509"/>
            <exon e_start="36246" e_stop="36308"/>
            <exon e_start="38636" e_stop="38654"/>
            <exon e_start="41196" e_stop="41307"/>
            <exon e_start="44442" e_stop="44489"/>
            <exon e_start="44984" e_stop="45114"/>
            <exon e_start="45516" e_stop="45749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.873" e_score="0.873"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="0.895"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.974"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.614" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.958"/>
          <exon-intron don_prob="1.000" acc_prob="0.818" e_score="0.992"/>
          <exon-only e_score="0.846"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.873">
            <gDNA_exon_boundary e_start="35003" e_stop="35081" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.873">
            <gDNA_intron_boundary i_start="35082" i_stop="35204" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="0.895">
            <gDNA_exon_boundary e_start="35205" e_stop="35356" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35357" i_stop="35470" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="35471" e_stop="35509" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35510" i_stop="36245" i_length="736"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36246" e_stop="36308" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36309" i_stop="38635" i_length="2327"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38636" e_stop="38654" e_length="19"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.614">
            <gDNA_intron_boundary i_start="38655" i_stop="41195" i_length="2541"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="41196" e_stop="41307" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41308" i_stop="44441" i_length="3134"/>
          </intron>
          <exon e_serial="7" e_score="0.958">
            <gDNA_exon_boundary e_start="44442" e_stop="44489" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44490" i_stop="44983" i_length="494"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="44984" e_stop="45114" e_length="131"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.818">
            <gDNA_intron_boundary i_start="45115" i_stop="45515" i_length="401"/>
          </intron>
          <exon e_serial="9" e_score="0.846">
            <gDNA_exon_boundary e_start="45516" e_stop="45749" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35003" stop="35081"/>
              <exon start="35205" stop="35356"/>
              <exon start="35471" stop="35509"/>
              <exon start="36246" stop="36308"/>
              <exon start="38636" stop="38654"/>
              <exon start="41196" stop="41307"/>
              <exon start="44442" stop="44489"/>
              <exon start="44984" stop="45114"/>
              <exon start="45516" stop="45749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7287-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTATATGTGTTTTTTGGTTGATCCAATTGACAATTTCTCTCTTCTAGCTTAACCCCAAACACTAATCAAGTTCCCAA : ATCTGATCTTTGATTTTGTATATACAGAAAAGCAAGCGAAAGGGGGGAAATGGGATTAGTGTTTTCACGATTGTTTTCTTCGTTATTTGGAAACAAGGAAGCTCGGATCTTAGTTCTTGGACTTGACAATGCTGGCAAAACAACAATTCTCT : ATCGTCTTCAGATGGGTGAAGTAGTTTCCACTATACCAA : CAATTGGATTTAATGTTGAGACGGTGCAGTATAACAATATAAAGTTTCAAGTTTGGGATCTAG : GGGGACAGACTAGTATCAG : GCCATACTGGAGGTGCTATTTTCCTAATACTCAAGCTATAATCTACGTTGTCGACTCAAGTGACACTGATAGGCTCGTGGTTGCTAAAGAGGAGTTCCACGCCATATTGGAG : GAGGAAGAGTTGAAGGGTGCTGTTGTCCTCATCTATGCTAACAAGCAG : GATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGGCCTTAGAGCTGCACAAGATTAAAAGTAGGCAGTGGGCTATTTTTAAGACTTCTGCCATCAAAGGAGAAGGGCTCTTTGAGGGCTTGGACTG : GTTGAGTAATACACTCAAATCCGGAGGTGGCTAAATTTTTGTAAACGATGCTGCAGATAAACTGTGAAGACAAACAAGAGAGAACTTGGTGTTAATGTGGCCTTCAATTATTTTTCTAATTGCCATAGTTTCTGATTAATGCGAACTGCTCGGATATAATGTTTATACTTATCACAGATAATGAGAATACGAGGCTTTATTTTGACTTCATAGATTACAATTTACACTTGAAAA</gDNA_template>
            <first_frame> S  Y  M  C  F  L  V  D  P  I  D  N  F  S  L  L  A  *  P  Q  T  L  I  K  F  P   : N  L  I  F  D  F  V  Y  T  E  K  Q  A  K  G  G  K  W  D  *  C  F  H  D  C  F  L  R  Y  L  E  T  R  K  L  G  S  *  F  L  D  L  T  M  L  A  K  Q  Q  F  S  :  I  V  F  R  W  V  K  *  F  P  L  Y  Q  :  Q  L  D  L  M  L  R  R  C  S  I  T  I  *  S  F  K  F  G  I  *  :  G  D  R  L  V  S   : G  H  T  G  G  A  I  F  L  I  L  K  L  *  S  T  L  S  T  Q  V  T  L  I  G  S  W  L  L  K  R  S  S  T  P  Y  W  R :   R  K  S  *  R  V  L  L  S  S  S  M  L  T  S  R :   I  F  L  V  H  L  M  M  L  Q  *  L  R  P  *  S  C  T  R  L  K  V  G  S  G  L  F  L  R  L  L  P  S  K  E  K  G  S  L  R  A  W  T   : G  *  V  I  H  S  N  P  E  V  A  K  F  L  *  T  M  L  Q  I  N  C  E  D  K  Q  E  R  T  W  C  *  C  G  L  Q  L  F  F  *  L  P  *  F  L  I  N  A  N  C  S  D  I  M  F  I  L  I  T  D  N  E  N  T  R  L  Y  F  D  F  I  D  Y  N  L  H  L  K  </first_frame>
            <second_frame>  P  I  C  V  F  W  L  I  Q  L  T  I  S  L  F  *  L  N  P  K  H  *  S  S  S  Q  :  I  *  S  L  I  L  Y  I  Q  K  S  K  R  K  G  G  N  G  I  S  V  F  T  I  V  F  F  V  I  W  K  Q  G  S  S  D  L  S  S  W  T  *  Q  C  W  Q  N  N  N  S  L :   S  S  S  D  G  *  S  S  F  H  Y  T  N :   N  W  I  *  C  *  D  G  A  V  *  Q  Y  K  V  S  S  L  G  S  R :   G  T  D  *  Y  Q  :  A  I  L  E  V  L  F  S  *  Y  S  S  Y  N  L  R  C  R  L  K  *  H  *  *  A  R  G  C  *  R  G  V  P  R  H  I  G   : G  G  R  V  E  G  C  C  C  P  H  L  C  *  Q  A   : G  S  S  W  C  T  *  *  C  C  S  D  *  G  L  R  A  A  Q  D  *  K  *  A  V  G  Y  F  *  D  F  C  H  Q  R  R  R  A  L  *  G  L  G  L  :  V  E  *  Y  T  Q  I  R  R  W  L  N  F  C  K  R  C  C  R  *  T  V  K  T  N  K  R  E  L  G  V  N  V  A  F  N  Y  F  S  N  C  H  S  F  *  L  M  R  T  A  R  I  *  C  L  Y  L  S  Q  I  M  R  I  R  G  F  I  L  T  S  *  I  T  I  Y  T  *  K </second_frame>
            <third_frame>   L  Y  V  F  F  G  *  S  N  *  Q  F  L  S  S  S  L  T  P  N  T  N  Q  V  P  K :   S  D  L  *  F  C  I  Y  R  K  A  S  E  R  G  E  M  G  L  V  F  S  R  L  F  S  S  L  F  G  N  K  E  A  R  I  L  V  L  G  L  D  N  A  G  K  T  T  I  L   : Y  R  L  Q  M  G  E  V  V  S  T  I  P   : T  I  G  F  N  V  E  T  V  Q  Y  N  N  I  K  F  Q  V  W  D  L   : G  G  Q  T  S  I  R :   P  Y  W  R  C  Y  F  P  N  T  Q  A  I  I  Y  V  V  D  S  S  D  T  D  R  L  V  V  A  K  E  E  F  H  A  I  L  E  :  E  E  E  L  K  G  A  V  V  L  I  Y  A  N  K  Q  :  D  L  P  G  A  L  D  D  A  A  V  T  E  A  L  E  L  H  K  I  K  S  R  Q  W  A  I  F  K  T  S  A  I  K  G  E  G  L  F  E  G  L  D  W :   L  S  N  T  L  K  S  G  G  G  *  I  F  V  N  D  A  A  D  K  L  *  R  Q  T  R  E  N  L  V  L  M  W  P  S  I  I  F  L  I  A  I  V  S  D  *  C  E  L  L  G  Y  N  V  Y  T  Y  H  R  *  *  E  Y  E  A  L  F  *  L  H  R  L  Q  F  T  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0014I11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35218" stop="35356"/>
                    <exon start="35471" stop="35509"/>
                    <exon start="36246" stop="36308"/>
                    <exon start="38636" stop="38654"/>
                    <exon start="41196" stop="41307"/>
                    <exon start="44442" stop="44489"/>
                    <exon start="44984" stop="45114"/>
                    <exon start="45516" stop="45549"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCIYRKASERGEMGLVFSRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVVAKEEFHAILEEEELKGAVVLIYANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTSAIKGEGLFEGLDWLSNTLKSGGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35060" e_stop="35089"/>
            <exon e_start="35232" e_stop="35356"/>
            <exon e_start="35471" e_stop="35509"/>
            <exon e_start="36246" e_stop="36308"/>
            <exon e_start="38636" e_stop="38654"/>
            <exon e_start="41196" e_stop="41307"/>
            <exon e_start="44442" e_stop="44489"/>
            <exon e_start="44984" e_stop="45114"/>
            <exon e_start="45516" e_stop="45765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.614" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.818" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35060" e_stop="35089" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="35090" i_stop="35231" i_length="142"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35232" e_stop="35356" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35357" i_stop="35470" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35471" e_stop="35509" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35510" i_stop="36245" i_length="736"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36246" e_stop="36308" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36309" i_stop="38635" i_length="2327"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38636" e_stop="38654" e_length="19"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.614">
            <gDNA_intron_boundary i_start="38655" i_stop="41195" i_length="2541"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41196" e_stop="41307" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41308" i_stop="44441" i_length="3134"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44442" e_stop="44489" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44490" i_stop="44983" i_length="494"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44984" e_stop="45114" e_length="131"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.818">
            <gDNA_intron_boundary i_start="45115" i_stop="45515" i_length="401"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="45516" e_stop="45765" e_length="250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35060" stop="35089"/>
              <exon start="35232" stop="35356"/>
              <exon start="35471" stop="35509"/>
              <exon start="36246" stop="36308"/>
              <exon start="38636" stop="38654"/>
              <exon start="41196" stop="41307"/>
              <exon start="44442" stop="44489"/>
              <exon start="44984" stop="45114"/>
              <exon start="45516" stop="45765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7287-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACACTAATCAAGTTCCCAAATCAGCTG : AAAAGCAAGCGAAAGGGGGGAAATGGGATTAGTGTTTTCACGATTGTTTTCTTCGTTATTTGGAAACAAGGAAGCTCGGATCTTAGTTCTTGGACTTGACAATGCTGGCAAAACAACAATTCTCT : ATCGTCTTCAGATGGGTGAAGTAGTTTCCACTATACCAA : CAATTGGATTTAATGTTGAGACGGTGCAGTATAACAATATAAAGTTTCAAGTTTGGGATCTAG : GGGGACAGACTAGTATCAG : GCCATACTGGAGGTGCTATTTTCCTAATACTCAAGCTATAATCTACGTTGTCGACTCAAGTGACACTGATAGGCTCGTGGTTGCTAAAGAGGAGTTCCACGCCATATTGGAG : GAGGAAGAGTTGAAGGGTGCTGTTGTCCTCATCTATGCTAACAAGCAG : GATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGGCCTTAGAGCTGCACAAGATTAAAAGTAGGCAGTGGGCTATTTTTAAGACTTCTGCCATCAAAGGAGAAGGGCTCTTTGAGGGCTTGGACTG : GTTGAGTAATACACTCAAATCCGGAGGTGGCTAAATTTTTGTAAACGATGCTGCAGATAAACTGTGAAGACAAACAAGAGAGAACTTGGTGTTAATGTGGCCTTCAATTATTTTTCTAATTGCCATAGTTTCTGATTAATGCGAACTGCTCGGATATAATGTTTATACTTATCACAGATAATGAGAATACGAGGCTTTATTTTGACTTCATAGATTACAATTTACACTTGAAAAGCTCAATGTTTCTTCT</gDNA_template>
            <first_frame> Q  T  L  I  K  F  P  N  Q  L  :  K  S  K  R  K  G  G  N  G  I  S  V  F  T  I  V  F  F  V  I  W  K  Q  G  S  S  D  L  S  S  W  T  *  Q  C  W  Q  N  N  N  S  L :   S  S  S  D  G  *  S  S  F  H  Y  T  N :   N  W  I  *  C  *  D  G  A  V  *  Q  Y  K  V  S  S  L  G  S  R :   G  T  D  *  Y  Q  :  A  I  L  E  V  L  F  S  *  Y  S  S  Y  N  L  R  C  R  L  K  *  H  *  *  A  R  G  C  *  R  G  V  P  R  H  I  G   : G  G  R  V  E  G  C  C  C  P  H  L  C  *  Q  A   : G  S  S  W  C  T  *  *  C  C  S  D  *  G  L  R  A  A  Q  D  *  K  *  A  V  G  Y  F  *  D  F  C  H  Q  R  R  R  A  L  *  G  L  G  L  :  V  E  *  Y  T  Q  I  R  R  W  L  N  F  C  K  R  C  C  R  *  T  V  K  T  N  K  R  E  L  G  V  N  V  A  F  N  Y  F  S  N  C  H  S  F  *  L  M  R  T  A  R  I  *  C  L  Y  L  S  Q  I  M  R  I  R  G  F  I  L  T  S  *  I  T  I  Y  T  *  K  A  Q  C  F  F  </first_frame>
            <second_frame>  K  H  *  S  S  S  Q  I  S  * :   K  A  S  E  R  G  E  M  G  L  V  F  S  R  L  F  S  S  L  F  G  N  K  E  A  R  I  L  V  L  G  L  D  N  A  G  K  T  T  I  L   : Y  R  L  Q  M  G  E  V  V  S  T  I  P   : T  I  G  F  N  V  E  T  V  Q  Y  N  N  I  K  F  Q  V  W  D  L   : G  G  Q  T  S  I  R :   P  Y  W  R  C  Y  F  P  N  T  Q  A  I  I  Y  V  V  D  S  S  D  T  D  R  L  V  V  A  K  E  E  F  H  A  I  L  E  :  E  E  E  L  K  G  A  V  V  L  I  Y  A  N  K  Q  :  D  L  P  G  A  L  D  D  A  A  V  T  E  A  L  E  L  H  K  I  K  S  R  Q  W  A  I  F  K  T  S  A  I  K  G  E  G  L  F  E  G  L  D  W :   L  S  N  T  L  K  S  G  G  G  *  I  F  V  N  D  A  A  D  K  L  *  R  Q  T  R  E  N  L  V  L  M  W  P  S  I  I  F  L  I  A  I  V  S  D  *  C  E  L  L  G  Y  N  V  Y  T  Y  H  R  *  *  E  Y  E  A  L  F  *  L  H  R  L  Q  F  T  L  E  K  L  N  V  S  S </second_frame>
            <third_frame>   N  T  N  Q  V  P  K  S  A   : E  K  Q  A  K  G  G  K  W  D  *  C  F  H  D  C  F  L  R  Y  L  E  T  R  K  L  G  S  *  F  L  D  L  T  M  L  A  K  Q  Q  F  S  :  I  V  F  R  W  V  K  *  F  P  L  Y  Q  :  Q  L  D  L  M  L  R  R  C  S  I  T  I  *  S  F  K  F  G  I  *  :  G  D  R  L  V  S   : G  H  T  G  G  A  I  F  L  I  L  K  L  *  S  T  L  S  T  Q  V  T  L  I  G  S  W  L  L  K  R  S  S  T  P  Y  W  R :   R  K  S  *  R  V  L  L  S  S  S  M  L  T  S  R :   I  F  L  V  H  L  M  M  L  Q  *  L  R  P  *  S  C  T  R  L  K  V  G  S  G  L  F  L  R  L  L  P  S  K  E  K  G  S  L  R  A  W  T   : G  *  V  I  H  S  N  P  E  V  A  K  F  L  *  T  M  L  Q  I  N  C  E  D  K  Q  E  R  T  W  C  *  C  G  L  Q  L  F  F  *  L  P  *  F  L  I  N  A  N  C  S  D  I  M  F  I  L  I  T  D  N  E  N  T  R  L  Y  F  D  F  I  D  Y  N  L  H  L  K  S  S  M  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0014I11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35233" stop="35356"/>
                    <exon start="35471" stop="35509"/>
                    <exon start="36246" stop="36308"/>
                    <exon start="38636" stop="38654"/>
                    <exon start="41196" stop="41307"/>
                    <exon start="44442" stop="44489"/>
                    <exon start="44984" stop="45114"/>
                    <exon start="45516" stop="45549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KASERGEMGLVFSRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVVAKEEFHAILEEEELKGAVVLIYANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTSAIKGEGLFEGLDWLSNTLKSGGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="51622" PGL_stop="45746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51622" e_stop="51514"/>
            <exon e_start="50891" e_stop="50812"/>
            <exon e_start="50658" e_stop="50548"/>
            <exon e_start="50443" e_stop="50369"/>
            <exon e_start="50289" e_stop="50160"/>
            <exon e_start="50080" e_stop="49989"/>
            <exon e_start="49743" e_stop="49693"/>
            <exon e_start="49429" e_stop="49353"/>
            <exon e_start="49272" e_stop="49218"/>
            <exon e_start="49083" e_stop="48982"/>
            <exon e_start="48747" e_stop="48696"/>
            <exon e_start="48534" e_stop="48489"/>
            <exon e_start="48407" e_stop="48352"/>
            <exon e_start="48230" e_stop="48179"/>
            <exon e_start="48105" e_stop="48026"/>
            <exon e_start="47926" e_stop="47856"/>
            <exon e_start="47743" e_stop="47703"/>
            <exon e_start="47318" e_stop="47219"/>
            <exon e_start="47119" e_stop="47048"/>
            <exon e_start="46952" e_stop="46875"/>
            <exon e_start="46518" e_stop="46248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.781" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51622" e_stop="51514" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51513" i_stop="50892" i_length="622"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50891" e_stop="50812" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.781" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50811" i_stop="50659" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50658" e_stop="50548" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="50547" i_stop="50444" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50443" e_stop="50369" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50368" i_stop="50290" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50289" e_stop="50160" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.918">
            <gDNA_intron_boundary i_start="50159" i_stop="50081" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50080" e_stop="49989" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49988" i_stop="49744" i_length="245"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49743" e_stop="49693" e_length="51"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49692" i_stop="49430" i_length="263"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="49429" e_stop="49353" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.926">
            <gDNA_intron_boundary i_start="49352" i_stop="49273" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="49272" e_stop="49218" e_length="55"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="49217" i_stop="49084" i_length="134"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="49083" e_stop="48982" e_length="102"/>
          </exon>
          <intron i_serial="10" don_prob="0.966" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48981" i_stop="48748" i_length="234"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="48747" e_stop="48696" e_length="52"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48695" i_stop="48535" i_length="161"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="48534" e_stop="48489" e_length="46"/>
          </exon>
          <intron i_serial="12" don_prob="0.984" acc_prob="0.988">
            <gDNA_intron_boundary i_start="48488" i_stop="48408" i_length="81"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="48407" e_stop="48352" e_length="56"/>
          </exon>
          <intron i_serial="13" don_prob="0.996" acc_prob="0.948">
            <gDNA_intron_boundary i_start="48351" i_stop="48231" i_length="121"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="48230" e_stop="48179" e_length="52"/>
          </exon>
          <intron i_serial="14" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48178" i_stop="48106" i_length="73"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="48105" e_stop="48026" e_length="80"/>
          </exon>
          <intron i_serial="15" don_prob="0.972" acc_prob="0.975">
            <gDNA_intron_boundary i_start="48025" i_stop="47927" i_length="99"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="47926" e_stop="47856" e_length="71"/>
          </exon>
          <intron i_serial="16" don_prob="0.904" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47855" i_stop="47744" i_length="112"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="47743" e_stop="47703" e_length="41"/>
          </exon>
          <intron i_serial="17" don_prob="0.993" acc_prob="0.871">
            <gDNA_intron_boundary i_start="47702" i_stop="47319" i_length="384"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="47318" e_stop="47219" e_length="100"/>
          </exon>
          <intron i_serial="18" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="47218" i_stop="47120" i_length="99"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="47119" e_stop="47048" e_length="72"/>
          </exon>
          <intron i_serial="19" don_prob="0.999" acc_prob="0.823">
            <gDNA_intron_boundary i_start="47047" i_stop="46953" i_length="95"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="46952" e_stop="46875" e_length="78"/>
          </exon>
          <intron i_serial="20" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46874" i_stop="46519" i_length="356"/>
          </intron>
          <exon e_serial="21" e_score="1.000">
            <gDNA_exon_boundary e_start="46518" e_stop="46248" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51622" stop="51514"/>
              <exon start="50891" stop="50812"/>
              <exon start="50658" stop="50548"/>
              <exon start="50443" stop="50369"/>
              <exon start="50289" stop="50160"/>
              <exon start="50080" stop="49989"/>
              <exon start="49743" stop="49693"/>
              <exon start="49429" stop="49353"/>
              <exon start="49272" stop="49218"/>
              <exon start="49083" stop="48982"/>
              <exon start="48747" stop="48696"/>
              <exon start="48534" stop="48489"/>
              <exon start="48407" stop="48352"/>
              <exon start="48230" stop="48179"/>
              <exon start="48105" stop="48026"/>
              <exon start="47926" stop="47856"/>
              <exon start="47743" stop="47703"/>
              <exon start="47318" stop="47219"/>
              <exon start="47119" stop="47048"/>
              <exon start="46952" stop="46875"/>
              <exon start="46518" stop="46248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9104-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50215" stop="50160"/>
              <exon start="50080" stop="49989"/>
              <exon start="49743" stop="49693"/>
              <exon start="49429" stop="49353"/>
              <exon start="49272" stop="49218"/>
              <exon start="49083" stop="48982"/>
              <exon start="48747" stop="48696"/>
              <exon start="48534" stop="48489"/>
              <exon start="48407" stop="48352"/>
              <exon start="48230" stop="48187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49392" stop="49353"/>
              <exon start="49272" stop="49218"/>
              <exon start="49083" stop="48982"/>
              <exon start="48747" stop="48696"/>
              <exon start="48534" stop="48489"/>
              <exon start="48407" stop="48352"/>
              <exon start="48230" stop="48179"/>
              <exon start="48105" stop="48026"/>
              <exon start="47926" stop="47856"/>
              <exon start="47743" stop="47703"/>
              <exon start="47318" stop="47219"/>
              <exon start="47119" stop="47104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTGTACTATATATACACTCTGTTGCTAGCATAGATTTGTGTGAAGCTAGAGTTTTTCTGTTTCTTTAGCCAAGAAACCTAAAAACCCATCTCAGATTTTGCACTG : ATTTGACAAAAATGAGAGAAAGGAATGTTGGGAAGTGTTCGTTATTCCTTCTTTGTTTGAATGTGGTCTCAAGTGTAGTG : ATGGCTGCTGCTCCACCAACTTGTCCTGCTGATACTGGCAGCGGTTGTGGGAGTGATTCAGGTGAATGGGATGGGGAGTTTTTCCCTGGAATTCCAAAAATTAAGTATGAG : GGTCCTTCTAGTAAGAACCCACTCTCCTTTAAATGGTACAATGCCGAGGAGGAGGTTCTTGGAGAAAAGATGAAG : GATTGGATGAGATTTAGCGTAGCATTTTGGCATACATTCCGTGGCACAGGAGCTGATCCATTTGGTGCTCCTACAAAGTCGTGGCCGTGGGAAGATGGCACCAATTCCCTGGCTATGGCCAAGAGAAGAC : TGAGAGCCAACTTTGAATTCCTGGAGAAACTTGGAGTAGAAAGATGGTGCTTCCACGATAGGGACATCGCTCCAGAGGGAAAGACCCTTGAG : GAAACAAATGCAAACTTGGATGAAGTGGTGGCTCTTGCCAAAGAGCTTCAG : GGAGATAAATTTCATCTTCTGTGGGGTACCGCTCAATTGTTCCTCCAGCCTCGCTACATGCATGGTGCTGCTACTAG : CTCTGAATTAGGTGTATATGCATATGCTGCTGCTCAGGTCAAGAAAGCCATGGAG : GTTACACATCATCTTGGGGGAGAGAATTATGTCTTTTGGGGTGGTCGAGAAGGTTACCAGAGCCTCCTGAACACAGATATGGAAAGAGAACTTAACCATATG : GCAAGGTTCATGGAAGCTGCTGTCGCTTACAAAAAGAAGATTGGCTTCAATG : GAACATTACTAATTGAACCAAAGCCTCAGGAGCCAACAAAACACCA : GTATGACTGGGATGCTGCCACTTCTGCTAATTTCTTACGCAAATATGGGCTTATAG : GAGAGTTCAAATTGAACATCGAGTGCAACCATGCCACGTTGGCTGGTCACAG : CTGCCATCATGAGCTTGAAACAGCAAGAATTAATGGTTTGCTGGGCAACATTGACGCAAATTCTGGCGATCCCCAGATTG : GTTGGGACACAGATCAATTTTTGATGGATGTCGCTGAGGCAACATTGGTGATGCAAACCGTTATTAAAAAT : GGAGGATTGGCACCAGGAGGATTCAACTTTGATGCAAAATT : GCGTAGGGAGAGCACTGATATTGAAGACATATTTATTGCTCACATTGCTGGTATGGACACTCTAGCCCGTGGCCTCAGAAATGCTGCCAAGCTAATTGAG : GAGGGCTCGTTGAATGATCTTGTCAGAAAGCGATATCAGAGTTTTGACTCCGAACTTGGTTCTGCAATTGAG : TCTGGGAAGGCAGACTTTGAACTGCTCGAGAAGAAGGCGCTAGAATGGGGAGAACCTAAAGTTCCTTCTGGAAAGCAG : GAGCTTGCAGAGATGATTTTTCAGTCAGCATTGTAGAAATCATGAGTTTTATACTTTTTTTAGCAGGCAGCAGCAGCAGCAGTAGGAAATAATATTATCATGAGTAGGAAGAAAAATTTAGAAATAAATATTTTACATATTCAGTGTGTGGGCTGTTTCCCAGTGAATTTTTCAGTGAACTAATTATTCAGAAAGTTGAATGTTTATTATCCCTACATCAATGACTAGCATGCTTCTGAATATTTTTTCAATACAATTTAACTTTTTATCT</gDNA_template>
            <first_frame> F  F  V  L  Y  I  H  S  V  A  S  I  D  L  C  E  A  R  V  F  L  F  L  *  P  R  N  L  K  T  H  L  R  F  C  T   : D  L  T  K  M  R  E  R  N  V  G  K  C  S  L  F  L  L  C  L  N  V  V  S  S  V  V  :  M  A  A  A  P  P  T  C  P  A  D  T  G  S  G  C  G  S  D  S  G  E  W  D  G  E  F  F  P  G  I  P  K  I  K  Y  E  :  G  P  S  S  K  N  P  L  S  F  K  W  Y  N  A  E  E  E  V  L  G  E  K  M  K  :  D  W  M  R  F  S  V  A  F  W  H  T  F  R  G  T  G  A  D  P  F  G  A  P  T  K  S  W  P  W  E  D  G  T  N  S  L  A  M  A  K  R  R   : L  R  A  N  F  E  F  L  E  K  L  G  V  E  R  W  C  F  H  D  R  D  I  A  P  E  G  K  T  L  E  :  E  T  N  A  N  L  D  E  V  V  A  L  A  K  E  L  Q  :  G  D  K  F  H  L  L  W  G  T  A  Q  L  F  L  Q  P  R  Y  M  H  G  A  A  T  S :   S  E  L  G  V  Y  A  Y  A  A  A  Q  V  K  K  A  M  E  :  V  T  H  H  L  G  G  E  N  Y  V  F  W  G  G  R  E  G  Y  Q  S  L  L  N  T  D  M  E  R  E  L  N  H  M  :  A  R  F  M  E  A  A  V  A  Y  K  K  K  I  G  F  N   : G  T  L  L  I  E  P  K  P  Q  E  P  T  K  H  Q :   Y  D  W  D  A  A  T  S  A  N  F  L  R  K  Y  G  L  I   : G  E  F  K  L  N  I  E  C  N  H  A  T  L  A  G  H  S :   C  H  H  E  L  E  T  A  R  I  N  G  L  L  G  N  I  D  A  N  S  G  D  P  Q  I   : G  W  D  T  D  Q  F  L  M  D  V  A  E  A  T  L  V  M  Q  T  V  I  K  N  :  G  G  L  A  P  G  G  F  N  F  D  A  K  L :   R  R  E  S  T  D  I  E  D  I  F  I  A  H  I  A  G  M  D  T  L  A  R  G  L  R  N  A  A  K  L  I  E  :  E  G  S  L  N  D  L  V  R  K  R  Y  Q  S  F  D  S  E  L  G  S  A  I  E  :  S  G  K  A  D  F  E  L  L  E  K  K  A  L  E  W  G  E  P  K  V  P  S  G  K  Q  :  E  L  A  E  M  I  F  Q  S  A  L  *  K  S  *  V  L  Y  F  F  *  Q  A  A  A  A  A  V  G  N  N  I  I  M  S  R  K  K  N  L  E  I  N  I  L  H  I  Q  C  V  G  C  F  P  V  N  F  S  V  N  *  L  F  R  K  L  N  V  Y  Y  P  Y  I  N  D  *  H  A  S  E  Y  F  F  N  T  I  *  L  F  I  </first_frame>
            <second_frame>  F  L  Y  Y  I  Y  T  L  L  L  A  *  I  C  V  K  L  E  F  F  C  F  F  S  Q  E  T  *  K  P  I  S  D  F  A  L  :  I  *  Q  K  *  E  K  G  M  L  G  S  V  R  Y  S  F  F  V  *  M  W  S  Q  V  *  * :   W  L  L  L  H  Q  L  V  L  L  I  L  A  A  V  V  G  V  I  Q  V  N  G  M  G  S  F  S  L  E  F  Q  K  L  S  M  R :   V  L  L  V  R  T  H  S  P  L  N  G  T  M  P  R  R  R  F  L  E  K  R  *  R :   I  G  *  D  L  A  *  H  F  G  I  H  S  V  A  Q  E  L  I  H  L  V  L  L  Q  S  R  G  R  G  K  M  A  P  I  P  W  L  W  P  R  E  D  :  *  E  P  T  L  N  S  W  R  N  L  E  *  K  D  G  A  S  T  I  G  T  S  L  Q  R  E  R  P  L  R :   K  Q  M  Q  T  W  M  K  W  W  L  L  P  K  S  F  R :   E  I  N  F  I  F  C  G  V  P  L  N  C  S  S  S  L  A  T  C  M  V  L  L  L   : A  L  N  *  V  Y  M  H  M  L  L  L  R  S  R  K  P  W  R :   L  H  I  I  L  G  E  R  I  M  S  F  G  V  V  E  K  V  T  R  A  S  *  T  Q  I  W  K  E  N  L  T  I  W :   Q  G  S  W  K  L  L  S  L  T  K  R  R  L  A  S  M  :  E  H  Y  *  L  N  Q  S  L  R  S  Q  Q  N  T   : S  M  T  G  M  L  P  L  L  L  I  S  Y  A  N  M  G  L  *  :  E  S  S  N  *  T  S  S  A  T  M  P  R  W  L  V  T   : A  A  I  M  S  L  K  Q  Q  E  L  M  V  C  W  A  T  L  T  Q  I  L  A  I  P  R  L  :  V  G  T  Q  I  N  F  *  W  M  S  L  R  Q  H  W  *  C  K  P  L  L  K  M :   E  D  W  H  Q  E  D  S  T  L  M  Q  N   : C  V  G  R  A  L  I  L  K  T  Y  L  L  L  T  L  L  V  W  T  L  *  P  V  A  S  E  M  L  P  S  *  L  R :   R  A  R  *  M  I  L  S  E  S  D  I  R  V  L  T  P  N  L  V  L  Q  L  S :   L  G  R  Q  T  L  N  C  S  R  R  R  R  *  N  G  E  N  L  K  F  L  L  E  S  R :   S  L  Q  R  *  F  F  S  Q  H  C  R  N  H  E  F  Y  T  F  F  S  R  Q  Q  Q  Q  Q  *  E  I  I  L  S  *  V  G  R  K  I  *  K  *  I  F  Y  I  F  S  V  W  A  V  S  Q  *  I  F  Q  *  T  N  Y  S  E  S  *  M  F  I  I  P  T  S  M  T  S  M  L  L  N  I  F  S  I  Q  F  N  F  L  S </second_frame>
            <third_frame>   F  C  T  I  Y  T  L  C  C  *  H  R  F  V  *  S  *  S  F  S  V  S  L  A  K  K  P  K  N  P  S  Q  I  L  H  * :   F  D  K  N  E  R  K  E  C  W  E  V  F  V  I  P  S  L  F  E  C  G  L  K  C  S   : D  G  C  C  S  T  N  L  S  C  *  Y  W  Q  R  L  W  E  *  F  R  *  M  G  W  G  V  F  P  W  N  S  K  N  *  V  *   : G  S  F  *  *  E  P  T  L  L  *  M  V  Q  C  R  G  G  G  S  W  R  K  D  E   : G  L  D  E  I  *  R  S  I  L  A  Y  I  P  W  H  R  S  *  S  I  W  C  S  Y  K  V  V  A  V  G  R  W  H  Q  F  P  G  Y  G  Q  E  K  T :   E  S  Q  L  *  I  P  G  E  T  W  S  R  K  M  V  L  P  R  *  G  H  R  S  R  G  K  D  P  *   : G  N  K  C  K  L  G  *  S  G  G  S  C  Q  R  A  S   : G  R  *  I  S  S  S  V  G  Y  R  S  I  V  P  P  A  S  L  H  A  W  C  C  Y  *  :  L  *  I  R  C  I  C  I  C  C  C  S  G  Q  E  S  H  G   : G  Y  T  S  S  W  G  R  E  L  C  L  L  G  W  S  R  R  L  P  E  P  P  E  H  R  Y  G  K  R  T  *  P  Y   : G  K  V  H  G  S  C  C  R  L  Q  K  E  D  W  L  Q  W :   N  I  T  N  *  T  K  A  S  G  A  N  K  T  P  :  V  *  L  G  C  C  H  F  C  *  F  L  T  Q  I  W  A  Y  R :   R  V  Q  I  E  H  R  V  Q  P  C  H  V  G  W  S  Q  :  L  P  S  *  A  *  N  S  K  N  *  W  F  A  G  Q  H  *  R  K  F  W  R  S  P  D  W :   L  G  H  R  S  I  F  D  G  C  R  *  G  N  I  G  D  A  N  R  Y  *  K   : W  R  I  G  T  R  R  I  Q  L  *  C  K  I  :  A  *  G  E  H  *  Y  *  R  H  I  Y  C  S  H  C  W  Y  G  H  S  S  P  W  P  Q  K  C  C  Q  A  N  *   : G  G  L  V  E  *  S  C  Q  K  A  I  S  E  F  *  L  R  T  W  F  C  N  *   : V  W  E  G  R  L  *  T  A  R  E  E  G  A  R  M  G  R  T  *  S  S  F  W  K  A   : G  A  C  R  D  D  F  S  V  S  I  V  E  I  M  S  F  I  L  F  L  A  G  S  S  S  S  S  R  K  *  Y  Y  H  E  *  E  E  K  F  R  N  K  Y  F  T  Y  S  V  C  G  L  F  P  S  E  F  F  S  E  L  I  I  Q  K  V  E  C  L  L  S  L  H  Q  *  L  A  C  F  *  I  F  F  Q  Y  N  L  T  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0014I11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51550" stop="51514"/>
                    <exon start="50891" stop="50812"/>
                    <exon start="50658" stop="50548"/>
                    <exon start="50443" stop="50369"/>
                    <exon start="50289" stop="50160"/>
                    <exon start="50080" stop="49989"/>
                    <exon start="49743" stop="49693"/>
                    <exon start="49429" stop="49353"/>
                    <exon start="49272" stop="49218"/>
                    <exon start="49083" stop="48982"/>
                    <exon start="48747" stop="48696"/>
                    <exon start="48534" stop="48489"/>
                    <exon start="48407" stop="48352"/>
                    <exon start="48230" stop="48179"/>
                    <exon start="48105" stop="48026"/>
                    <exon start="47926" stop="47856"/>
                    <exon start="47743" stop="47703"/>
                    <exon start="47318" stop="47219"/>
                    <exon start="47119" stop="47048"/>
                    <exon start="46952" stop="46875"/>
                    <exon start="46518" stop="46483"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1491</number_coding_nucleotides>
                  <number_encoded_amino_acids>497</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRNLKTHLRFCTDLTKMRERNVGKCSLFLLCLNVVSSVVMAAAPPTCPADTGSGCGSDSGEWDGEFFPGIPKIKYEGPSSKNPLSFKWYNAEEEVLGEKMKDWMRFSVAFWHTFRGTGADPFGAPTKSWPWEDGTNSLAMAKRRLRANFEFLEKLGVERWCFHDRDIAPEGKTLEETNANLDEVVALAKELQGDKFHLLWGTAQLFLQPRYMHGAATSSELGVYAYAAAQVKKAMEVTHHLGGENYVFWGGREGYQSLLNTDMERELNHMARFMEAAVAYKKKIGFNGTLLIEPKPQEPTKHQYDWDAATSANFLRKYGLIGEFKLNIECNHATLAGHSCHHELETARINGLLGNIDANSGDPQIGWDTDQFLMDVAEATLVMQTVIKNGGLAPGGFNFDAKLRRESTDIEDIFIAHIAGMDTLARGLRNAAKLIEEGSLNDLVRKRYQSFDSELGSAIESGKADFELLEKKALEWGEPKVPSGKQELAEMIFQSAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50215" e_stop="50160"/>
            <exon e_start="50080" e_stop="49989"/>
            <exon e_start="49743" e_stop="49693"/>
            <exon e_start="49429" e_stop="49353"/>
            <exon e_start="49272" e_stop="49218"/>
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            <exon e_start="48534" e_stop="48489"/>
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            <exon e_start="48230" e_stop="48179"/>
            <exon e_start="48105" e_stop="48026"/>
            <exon e_start="47926" e_stop="47856"/>
            <exon e_start="47743" e_stop="47703"/>
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            <exon e_start="47119" e_stop="47048"/>
            <exon e_start="46952" e_stop="46875"/>
            <exon e_start="46518" e_stop="46264"/>
            <exon e_start="45776" e_stop="45746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.975" e_score="0.988"/>
          <exon-intron don_prob="0.904" acc_prob="0.998" e_score="0.972"/>
          <exon-intron don_prob="0.993" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.950"/>
          <exon-intron don_prob="0.999" acc_prob="0.823" e_score="0.931"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.219" e_score="0.859"/>
          <exon-only e_score="0.645"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50215" e_stop="50160" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.918">
            <gDNA_intron_boundary i_start="50159" i_stop="50081" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50080" e_stop="49989" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49988" i_stop="49744" i_length="245"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49743" e_stop="49693" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49692" i_stop="49430" i_length="263"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49429" e_stop="49353" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.926">
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          </intron>
          <exon e_serial="5" e_score="1.000">
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          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="49217" i_stop="49084" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49083" e_stop="48982" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.966" acc_prob="0.999">
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          </intron>
          <exon e_serial="7" e_score="1.000">
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          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48695" i_stop="48535" i_length="161"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="48534" e_stop="48489" e_length="46"/>
          </exon>
          <intron i_serial="8" don_prob="0.984" acc_prob="0.988">
            <gDNA_intron_boundary i_start="48488" i_stop="48408" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="48407" e_stop="48352" e_length="56"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.948">
            <gDNA_intron_boundary i_start="48351" i_stop="48231" i_length="121"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
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          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.998">
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          </intron>
          <exon e_serial="11" e_score="0.988">
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          </exon>
          <intron i_serial="11" don_prob="0.972" acc_prob="0.975">
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          </intron>
          <exon e_serial="12" e_score="0.972">
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          </exon>
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          </intron>
          <exon e_serial="13" e_score="1.000">
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          </exon>
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          </intron>
          <exon e_serial="14" e_score="0.950">
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          </exon>
          <intron i_serial="14" don_prob="1.000" acc_prob="0.997">
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          </intron>
          <exon e_serial="15" e_score="0.931">
            <gDNA_exon_boundary e_start="47119" e_stop="47048" e_length="72"/>
          </exon>
          <intron i_serial="15" don_prob="0.999" acc_prob="0.823">
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          </intron>
          <exon e_serial="16" e_score="1.000">
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          </exon>
          <intron i_serial="16" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46874" i_stop="46519" i_length="356"/>
          </intron>
          <exon e_serial="17" e_score="0.859">
            <gDNA_exon_boundary e_start="46518" e_stop="46264" e_length="255"/>
          </exon>
          <intron i_serial="17" don_prob="0.000" acc_prob="0.219">
            <gDNA_intron_boundary i_start="46263" i_stop="45777" i_length="487"/>
          </intron>
          <exon e_serial="18" e_score="0.645">
            <gDNA_exon_boundary e_start="45776" e_stop="45746" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50215" stop="50160"/>
              <exon start="50080" stop="49989"/>
              <exon start="49743" stop="49693"/>
              <exon start="49429" stop="49353"/>
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              <exon start="48534" stop="48489"/>
              <exon start="48407" stop="48352"/>
              <exon start="48230" stop="48187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49392" stop="49353"/>
              <exon start="49272" stop="49218"/>
              <exon start="49083" stop="48982"/>
              <exon start="48747" stop="48696"/>
              <exon start="48534" stop="48489"/>
              <exon start="48407" stop="48352"/>
              <exon start="48230" stop="48179"/>
              <exon start="48105" stop="48026"/>
              <exon start="47926" stop="47856"/>
              <exon start="47743" stop="47703"/>
              <exon start="47318" stop="47219"/>
              <exon start="47119" stop="47104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="48696"/>
              <exon start="48534" stop="48489"/>
              <exon start="48407" stop="48352"/>
              <exon start="48230" stop="48179"/>
              <exon start="48105" stop="48026"/>
              <exon start="47926" stop="47856"/>
              <exon start="47743" stop="47703"/>
              <exon start="47318" stop="47219"/>
              <exon start="47119" stop="47048"/>
              <exon start="46952" stop="46875"/>
              <exon start="46518" stop="46264"/>
              <exon start="45776" stop="45746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9104-3" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTCGTGGCCGTGGGAAGATGGCACCAATTCCCTGGCTATGGCCAAGAGAAGAC : TGAGAGCCAACTTTGAATTCCTGGAGAAACTTGGAGTAGAAAGATGGTGCTTCCACGATAGGGACATCGCTCCAGAGGGAAAGACCCTTGAG : GAAACAAATGCAAACTTGGATGAAGTGGTGGCTCTTGCCAAAGAGCTTCAG : GGAGATAAATTTCATCTTCTGTGGGGTACCGCTCAATTGTTCCTCCAGCCTCGCTACATGCATGGTGCTGCTACTAG : CTCTGAATTAGGTGTATATGCATATGCTGCTGCTCAGGTCAAGAAAGCCATGGAG : GTTACACATCATCTTGGGGGAGAGAATTATGTCTTTTGGGGTGGTCGAGAAGGTTACCAGAGCCTCCTGAACACAGATATGGAAAGAGAACTTAACCATATG : GCAAGGTTCATGGAAGCTGCTGTCGCTTACAAAAAGAAGATTGGCTTCAATG : GAACATTACTAATTGAACCAAAGCCTCAGGAGCCAACAAAACACCA : GTATGACTGGGATGCTGCCACTTCTGCTAATTTCTTACGCAAATATGGGCTTATAG : GAGAGTTCAAATTGAACATCGAGTGCAACCATGCCACGTTGGCTGGTCACAG : CTGCCATCATGAGCTTGAAACAGCAAGAATTAATGGTTTGCTGGGCAACATTGACGCAAATTCTGGCGATCCCCAGATTG : GTTGGGACACAGATCAATTTTTGATGGATGTCGCTGAGGCAACATTGGTGATGCAAACCGTTATTAAAAAT : GGAGGATTGGCACCAGGAGGATTCAACTTTGATGCAAAATT : GCGTAGGGAGAGCACTGATATTGAAGACATATTTATTGCTCACATTGCTGGTATGGACACTCTAGCCCGTGGCCTCAGAAATGCTGCCAAGCTAATTGAG : GAGGGCTCGTTGAATGATCTTGTCAGAAAGCGATATCAGAGTTTTGACTCCGAACTTGGTTCTGCAATTGAG : TCTGGGAAGGCAGACTTTGAACTGCTCGAGAAGAAGGCGCTAGAATGGGGAGAACCTAAAGTTCCTTCTGGAAAGCAG : GAGCTTGCAGAGATGATTTTTCAGTCAGCATTGTAGAAATCATGAGTTTTATACTTTTTTTAGCAGGCAGCAGCAGCAGCAGTAGGAAATAATATTATCATGAGTAGGAAGAAAAATTTAGAAATAAATATTTTACATATTCAGTGTGTGGGCTGTTTCCCAGTGAATTTTTCAGTGAACTAATTATTCAGAAAGTTGAATGTTTATTATCCCTACATCAATGACTAGCATGCTTCTGAATATTTTTTCAATACA : GAAAGAAAAACAGAAGAAACATTGAGCTTTT</gDNA_template>
            <first_frame> K  V  V  A  V  G  R  W  H  Q  F  P  G  Y  G  Q  E  K  T :   E  S  Q  L  *  I  P  G  E  T  W  S  R  K  M  V  L  P  R  *  G  H  R  S  R  G  K  D  P  *   : G  N  K  C  K  L  G  *  S  G  G  S  C  Q  R  A  S   : G  R  *  I  S  S  S  V  G  Y  R  S  I  V  P  P  A  S  L  H  A  W  C  C  Y  *  :  L  *  I  R  C  I  C  I  C  C  C  S  G  Q  E  S  H  G   : G  Y  T  S  S  W  G  R  E  L  C  L  L  G  W  S  R  R  L  P  E  P  P  E  H  R  Y  G  K  R  T  *  P  Y   : G  K  V  H  G  S  C  C  R  L  Q  K  E  D  W  L  Q  W :   N  I  T  N  *  T  K  A  S  G  A  N  K  T  P  :  V  *  L  G  C  C  H  F  C  *  F  L  T  Q  I  W  A  Y  R :   R  V  Q  I  E  H  R  V  Q  P  C  H  V  G  W  S  Q  :  L  P  S  *  A  *  N  S  K  N  *  W  F  A  G  Q  H  *  R  K  F  W  R  S  P  D  W :   L  G  H  R  S  I  F  D  G  C  R  *  G  N  I  G  D  A  N  R  Y  *  K   : W  R  I  G  T  R  R  I  Q  L  *  C  K  I  :  A  *  G  E  H  *  Y  *  R  H  I  Y  C  S  H  C  W  Y  G  H  S  S  P  W  P  Q  K  C  C  Q  A  N  *   : G  G  L  V  E  *  S  C  Q  K  A  I  S  E  F  *  L  R  T  W  F  C  N  *   : V  W  E  G  R  L  *  T  A  R  E  E  G  A  R  M  G  R  T  *  S  S  F  W  K  A   : G  A  C  R  D  D  F  S  V  S  I  V  E  I  M  S  F  I  L  F  L  A  G  S  S  S  S  S  R  K  *  Y  Y  H  E  *  E  E  K  F  R  N  K  Y  F  T  Y  S  V  C  G  L  F  P  S  E  F  F  S  E  L  I  I  Q  K  V  E  C  L  L  S  L  H  Q  *  L  A  C  F  *  I  F  F  Q  Y   : R  K  K  N  R  R  N  I  E  L   </first_frame>
            <second_frame>  K  S  W  P  W  E  D  G  T  N  S  L  A  M  A  K  R  R   : L  R  A  N  F  E  F  L  E  K  L  G  V  E  R  W  C  F  H  D  R  D  I  A  P  E  G  K  T  L  E  :  E  T  N  A  N  L  D  E  V  V  A  L  A  K  E  L  Q  :  G  D  K  F  H  L  L  W  G  T  A  Q  L  F  L  Q  P  R  Y  M  H  G  A  A  T  S :   S  E  L  G  V  Y  A  Y  A  A  A  Q  V  K  K  A  M  E  :  V  T  H  H  L  G  G  E  N  Y  V  F  W  G  G  R  E  G  Y  Q  S  L  L  N  T  D  M  E  R  E  L  N  H  M  :  A  R  F  M  E  A  A  V  A  Y  K  K  K  I  G  F  N   : G  T  L  L  I  E  P  K  P  Q  E  P  T  K  H  Q :   Y  D  W  D  A  A  T  S  A  N  F  L  R  K  Y  G  L  I   : G  E  F  K  L  N  I  E  C  N  H  A  T  L  A  G  H  S :   C  H  H  E  L  E  T  A  R  I  N  G  L  L  G  N  I  D  A  N  S  G  D  P  Q  I   : G  W  D  T  D  Q  F  L  M  D  V  A  E  A  T  L  V  M  Q  T  V  I  K  N  :  G  G  L  A  P  G  G  F  N  F  D  A  K  L :   R  R  E  S  T  D  I  E  D  I  F  I  A  H  I  A  G  M  D  T  L  A  R  G  L  R  N  A  A  K  L  I  E  :  E  G  S  L  N  D  L  V  R  K  R  Y  Q  S  F  D  S  E  L  G  S  A  I  E  :  S  G  K  A  D  F  E  L  L  E  K  K  A  L  E  W  G  E  P  K  V  P  S  G  K  Q  :  E  L  A  E  M  I  F  Q  S  A  L  *  K  S  *  V  L  Y  F  F  *  Q  A  A  A  A  A  V  G  N  N  I  I  M  S  R  K  K  N  L  E  I  N  I  L  H  I  Q  C  V  G  C  F  P  V  N  F  S  V  N  *  L  F  R  K  L  N  V  Y  Y  P  Y  I  N  D  *  H  A  S  E  Y  F  F  N  T  :  E  R  K  T  E  E  T  L  S  F  </second_frame>
            <third_frame>   S  R  G  R  G  K  M  A  P  I  P  W  L  W  P  R  E  D  :  *  E  P  T  L  N  S  W  R  N  L  E  *  K  D  G  A  S  T  I  G  T  S  L  Q  R  E  R  P  L  R :   K  Q  M  Q  T  W  M  K  W  W  L  L  P  K  S  F  R :   E  I  N  F  I  F  C  G  V  P  L  N  C  S  S  S  L  A  T  C  M  V  L  L  L   : A  L  N  *  V  Y  M  H  M  L  L  L  R  S  R  K  P  W  R :   L  H  I  I  L  G  E  R  I  M  S  F  G  V  V  E  K  V  T  R  A  S  *  T  Q  I  W  K  E  N  L  T  I  W :   Q  G  S  W  K  L  L  S  L  T  K  R  R  L  A  S  M  :  E  H  Y  *  L  N  Q  S  L  R  S  Q  Q  N  T   : S  M  T  G  M  L  P  L  L  L  I  S  Y  A  N  M  G  L  *  :  E  S  S  N  *  T  S  S  A  T  M  P  R  W  L  V  T   : A  A  I  M  S  L  K  Q  Q  E  L  M  V  C  W  A  T  L  T  Q  I  L  A  I  P  R  L  :  V  G  T  Q  I  N  F  *  W  M  S  L  R  Q  H  W  *  C  K  P  L  L  K  M :   E  D  W  H  Q  E  D  S  T  L  M  Q  N   : C  V  G  R  A  L  I  L  K  T  Y  L  L  L  T  L  L  V  W  T  L  *  P  V  A  S  E  M  L  P  S  *  L  R :   R  A  R  *  M  I  L  S  E  S  D  I  R  V  L  T  P  N  L  V  L  Q  L  S :   L  G  R  Q  T  L  N  C  S  R  R  R  R  *  N  G  E  N  L  K  F  L  L  E  S  R :   S  L  Q  R  *  F  F  S  Q  H  C  R  N  H  E  F  Y  T  F  F  S  R  Q  Q  Q  Q  Q  *  E  I  I  L  S  *  V  G  R  K  I  *  K  *  I  F  Y  I  F  S  V  W  A  V  S  Q  *  I  F  Q  *  T  N  Y  S  E  S  *  M  F  I  I  P  T  S  M  T  S  M  L  L  N  I  F  S  I  Q :   K  E  K  Q  K  K  H  *  A  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0014I11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50214" stop="50160"/>
                    <exon start="50080" stop="49989"/>
                    <exon start="49743" stop="49693"/>
                    <exon start="49429" stop="49353"/>
                    <exon start="49272" stop="49218"/>
                    <exon start="49083" stop="48982"/>
                    <exon start="48747" stop="48696"/>
                    <exon start="48534" stop="48489"/>
                    <exon start="48407" stop="48352"/>
                    <exon start="48230" stop="48179"/>
                    <exon start="48105" stop="48026"/>
                    <exon start="47926" stop="47856"/>
                    <exon start="47743" stop="47703"/>
                    <exon start="47318" stop="47219"/>
                    <exon start="47119" stop="47048"/>
                    <exon start="46952" stop="46875"/>
                    <exon start="46518" stop="46483"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSWPWEDGTNSLAMAKRRLRANFEFLEKLGVERWCFHDRDIAPEGKTLEETNANLDEVVALAKELQGDKFHLLWGTAQLFLQPRYMHGAATSSELGVYAYAAAQVKKAMEVTHHLGGENYVFWGGREGYQSLLNTDMERELNHMARFMEAAVAYKKKIGFNGTLLIEPKPQEPTKHQYDWDAATSANFLRKYGLIGEFKLNIECNHATLAGHSCHHELETARINGLLGNIDANSGDPQIGWDTDQFLMDVAEATLVMQTVIKNGGLAPGGFNFDAKLRRESTDIEDIFIAHIAGMDTLARGLRNAAKLIEEGSLNDLVRKRYQSFDSELGSAIESGKADFELLEKKALEWGEPKVPSGKQELAEMIFQSAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 52864 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 8810 bytes was the average size of a spliced alignment
$ 8576 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 4288 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 16 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:33:24
-->
