<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:45:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706282" ref_strand="+" ref_description="SGN-E706282 [FA29CB04]">
      <seq>gtgagaatgacgagagcctagaagaggaagaagctcctgagatatcaaaatgggggtcaattatatggctttcgattttgacactatggatcgcagtcttgtcagaatacctggttaatgccatagagggggcatcagttgctatgagtattcctgtggcatttataagtgtcatactgctaccgattgttggaaatgcagctgaacatgctggtgctgtcatgtttgcagtcaaagacaagcttgacatctctttgggagtagcaataggctcatcaacgcagattgccatgtttgggatccccttctgcgtggtggttggatggattatgggtcgtcctatggatttgaattttcagttatttgaaacagccacgcttttcatgagtgtccttgttgtagcattcatgctgcaggatggaacttccaattacttcaaaggacttatgctccttctttgctatttgatagttgctgcaagcttctttgtgcatatagatccagaggctatacaggacaagcccaaaaaaacataataggtggtttcagatcatgtagacctgctaaagctgaaggtccataatacaaattagagttgcatatatataaaaaaagagccatttcttcaagttttggccactctgagctgtatatattaacaacaattcaactgttgatgatgctcagagttctgtattactagcatctgtgttcagttgaaaagtatatgttgttctcttagtattgtgtggcagctgctgatttttttttctcctcgaaaatggctggatagtaaagaaatttttgtgttatatattcctagtaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="3501" stop="301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3201" g_stop="3074" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3073" i_stop="2871" i_length="203">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2870" g_stop="2754" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="245" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2753" i_stop="2676" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2675" g_stop="2622" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="299" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2621" i_stop="2377" i_length="245">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2376" g_stop="2260" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="416" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2259" i_stop="1879" i_length="381">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1878" g_stop="1782" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="513" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1781" i_stop="926" i_length="856">
            <donor d_prob="0.653" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="925" g_stop="601" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="838" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E706282" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3201" e_stop="3074"/>
          <exon e_start="2870" e_stop="2754"/>
          <exon e_start="2675" e_stop="2622"/>
          <exon e_start="2376" e_stop="2260"/>
          <exon e_start="1878" e_stop="1782"/>
          <exon e_start="925" e_stop="601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAATGACGAGAGCCTAGAAGAGGAAGAAGCTCCTGAGATATCAAAATGGGGGTCAATTATATGGCTTTCGATTTTGACACTATGGATCGCAGTCTTGTCAGAATACCTGGTTAATGCCATAGAGGTAATTTCTTTGTCCTGCTCTTTGTTCTCATTTCCGATTTCCATTCTTTGGCATTCTATTGATAGAATCATCTAATTATCAATAACTTGGGGATCGTCCTTAGACTGTGTTCTTAATCTTTGACACATATAAGTAGCCTAAGACAAACTAAAAAATAATGCTTCTCTGAGTTTCTCTGCCAATAAATTACACTATGTTTTCAGGGGGCATCAGTTGCTATGAGTATTCCTGTGGCATTTATAAGTGTCATACTGCTACCGATTGTTGGAAATGCAGCTGAACATGCTGGTGCTGTCATGTTTGCAGTCAAAGACAAGCTTGTACGTTCTTCTATCTTTTCTTTGTATCAAAACAAGGGTTTACTATTCTTTTTCTCTACTTACCTGGTGCCGTTACAGGACATCTCTTTGGGAGTAGCAATAGGCTCATCAACGCAGATTGCCATGTTTGGGGTAGGTAATTCAAAATGTTTATTCATGTTAATTACATCAAAGAGAAACTTTAAGAAGCAAGTTACTCTTGTATAGCCTCAGATTGGACGTCTCATTCAGGAAGACTCTACCATTAGGCATTAGCAGTAACTGAATATAGATGCACAATCTCATATTTTATCCGCCTTTACTTCCTGGACCATCACATAATAACTTCCACACAATTTTTTCTTGTATGTTTATTCCTCTTTTATCGTTGGATGCAGATCCCCTTCTGCGTGGTGGTTGGATGGATTATGGGTCGTCCTATGGATTTGAATTTTCAGTTATTTGAAACAGCCACGCTTTTCATGAGTGTCCTTGTTGTAGCATTCATGCTGCAGGTGTGCTCTTAAACTAGATAATTCAGAATCTTTCTGGTTCTACTTTTTCCCCATTTCTCTGAGGAGTATTACTTTTGTCTTGTTGATTTCTATGCCGTCTTTTAATTTAGAGGTTGAGGTTGGGGAAAAGTTAAAACTTAATTGTCTTTTCAAATTGCTTGAAAATTACAACATAAAGGCAATATATTTGTTCTAAAAGTTGAAAGTTCTGCAAGTCTTGAGTCGGAGCTTGATCCAGTTAAAATAAATGTCATGTCTCCTTTTCCTCCTTCTCGATCCTTTGTTCTTTTCTTCACTTCCGGGATTATGATTGAAATTTAGCTTGCAAGGCTTCCTGCTGTTGAAAATAATTTTTCATGTTATCCTTTCCTCTTTCTGCAGGATGGAACTTCCAATTACTTCAAAGGACTTATGCTCCTTCTTTGCTATTTGATAGTTGCTGCAAGCTTCTTTGTGCATATAGATCCAGAGGCTATACGTGAGTTATATTTTCTTCGTGAAATTACTATACAGAAGCTCATGATCTTTGATTTATATACTCTTTTGGTGTCTGTTTTAACTGATAACATCTATTATTGTTACTGTTATTCTATTCTCTTCTGCTTTGCTTTTGTTTAGTTCTTGAGCACTTCTTCTGTAGTTAAATAAAACAACGGGTTAACCATTTTTGGTCTTGTCCAACGTAACTTTTAGTTGGGGTATACAATTCTTTGGATACCGAAACATTTTACAAAATACAGAAAGCATGAATTAAAGAAGAATATGGCAAACACTTGTTTTGGAGTGTACTGATTTTTAGTTAGGCACACACACATAGAATGGCATGCAAACTTTATAAGTAGCAAAAAACTCCATAATGATGAGGAAGTGTTAAGTGAATTGAAGTAAGATGTACATGTCTTGAGCCTCTGGAACTAGAAGAAAACATCGTCCAAGTTTTTACATATAAGTCATCCCACTGCTCATCTCAGACAACGAGCTGATTAGGAAATCTAAGGTGAGAAATAGCATCCAGGTAAGAGTTTGAAAAGATCGGATATTCTTTTGCCTTCTTCAGTTCCACTTAATAGCAGCACACTTGGTCTTCCTCATCTTTACGACATGTTAGATGGAACAACCAATGAAACAAGTCTGTCATGTATGATACAGAACCTTTCTTTTCTTGAACATTCTCTCTGTTTTTCCTTGTGTCATCCATACGGGGTACAGTATGCACCTTTATAATGGTTAGTTACAACTTGCTCGATTTTATTCGACTTGATGATGTTGATCAATTAACTATTGCTTTGTTAGATACATCGTTTTGATGATTATAATGTATCGTTGCTTTGCAGAGGACAAGCCCAAAAAAACATAATAGGTGGTTTCAGATCATGTAGACCTGCTAAAGCTGAAGGTCCATAATACAAATTAGAGTTGCATATATATAAAAAAAGAGCCATTTCTTCAAGTTTTGGCCACTCTGAGCTGTATATATTAACAACAATTCAACTGTTGATGATGCTCAGAGTTCTGTATTACTAGCATCTGTGTTCAGTTGAAAAGTATATGTTGTTCTCTTAGTATTGTGTGGCAGCTGCTGATTTTTTTTTCTCCTCGAAAATGGCTGGATAGTAAAGAAATTTTTGTGTTATATATTCCTAGTAGGAAAAAAAAAAA</genome_strand>
        <mrna_strand>GTGAGAATGACGAGAGCCTAGAAGAGGAAGAAGCTCCTGAGATATCAAAATGGGGGTCAATTATATGGCTTTCGATTTTGACACTATGGATCGCAGTCTTGTCAGAATACCTGGTTAATGCCATAGAG...........................................................................................................................................................................................................GGGGCATCAGTTGCTATGAGTATTCCTGTGGCATTTATAAGTGTCATACTGCTACCGATTGTTGGAAATGCAGCTGAACATGCTGGTGCTGTCATGTTTGCAGTCAAAGACAAGCTT..............................................................................GACATCTCTTTGGGAGTAGCAATAGGCTCATCAACGCAGATTGCCATGTTTGGG.....................................................................................................................................................................................................................................................ATCCCCTTCTGCGTGGTGGTTGGATGGATTATGGGTCGTCCTATGGATTTGAATTTTCAGTTATTTGAAACAGCCACGCTTTTCATGAGTGTCCTTGTTGTAGCATTCATGCTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................GATGGAACTTCCAATTACTTCAAAGGACTTATGCTCCTTCTTTGCTATTTGATAGTTGCTGCAAGCTTCTTTGTGCATATAGATCCAGAGGCTATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACAAGCCCAAAAAAACATAATAGGTGGTTTCAGATCATGTAGACCTGCTAAAGCTGAAGGTCCATAATACAAATTAGAGTTGCATATATATAAAAAAAGAGCCATTTCTTCAAGTTTTGGCCACTCTGAGCTGTATATATTAACAACAATTCAACTGTTGATGATGCTCAGAGTTCTGTATTACTAGCATCTGTGTTCAGTTGAAAAGTATATGTTGTTCTCTTAGTATTGTGTGGCAGCTGCTGATTTTTTTTTCTCCTCGAAAATGGCTGGATAGTAAAGAAATTTTTGTGTTATATATTCCTAGTAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235356" ref_strand="+" ref_description="SGN-E235356 [cLED-11-H9]">
      <seq>tcagtagctattgtgaatcatctattaagtaagtactagaaacatcaacaaggagctgcgtctctgatgatactgtgtgttaattcctatggaaacaatatatcgagggggtagaaagaaaaaagtgttggaacaaatgagcccgtcatggaaagaaatttgtataaaatgtgataaaggtggagaagtgttggtttgtgctgatagttgttgtcctatagcagttcatataagttgcatgggttgtccagctaggtttgatgatttgggaaaattctactgcccctattgtctgtataggcaatcaattgcaagatttcatcaagcaaaggggtatgttttgtcaaaaaaacaagctctggatgatttcattgataaggaaataatagataaggtcagagaggtgccatcaatactaagcaaatcaacacgtgaaaggtctgatgagccattaccagaaaagaagagtgatgttctagaaagcaattgtgatcaacaatgggtggttgggcagaaaatacttgcaggcccagctgttaattgtggtagtaaacctagtgttcgtacatcttctaaagcaacatcaaccaattttagagttttaaaagctggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="+" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="9394" stop="10609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9694" g_stop="10309" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="+" ref_id="SGN-E235356" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9694" e_stop="10309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAGCTATTGTGAATCATCTATTAAGTAAGTACTAGAAACATCAACAAGGAGCTGCGTCTCTGATGATACTGTGTGTTAATTCCTATGGAAACAATATATCGAGGGGGTAGAAAGAAAAAAGTGTTGGAACAAATGAGCCCGTCATGGAAAGAAATTTGTATAAAATGTGATAAAGGTGGAGAAGTGTTGGTTTGTGCTGATAGTTGTTGTCCTATAGCAGTTCATATAAGTTGCATGGGTTGTCCAGCTAGGTTTGATGATTTGGGAAAATTCTACTGCCCCTATTGTCTGTATAGGCAATCAATTGCAAGATTTCATCAAGCAAAGGGGTATGTTTTGTCAAAAAAACAAGCTCTGGATGATTTCATTGATAAGGAAATAATAGATAAGGTCAGAGAGGTGCCATCAATACTAAGCAAATCAACACGTGAAAGGTCTGATGAGCCATTACCAGAAAAGAAGAGTGATGTTCTAGAAAGCAATTGTGATCAACAATGGGTGGTTGGGCAGAAAATACTTGCAGGCCCAGCTGTTAATTGTGGTAGTAAACCTAGTGTTCGTACATCTTCTAAAGCAACATCAACCAATTTTAGAGTTTTAGAAGCTGGAAAT</genome_strand>
        <mrna_strand>TCAGTAGCTATTGTGAATCATCTATTAAGTAAGTACTAGAAACATCAACAAGGAGCTGCGTCTCTGATGATACTGTGTGTTAATTCCTATGGAAACAATATATCGAGGGGGTAGAAAGAAAAAAGTGTTGGAACAAATGAGCCCGTCATGGAAAGAAATTTGTATAAAATGTGATAAAGGTGGAGAAGTGTTGGTTTGTGCTGATAGTTGTTGTCCTATAGCAGTTCATATAAGTTGCATGGGTTGTCCAGCTAGGTTTGATGATTTGGGAAAATTCTACTGCCCCTATTGTCTGTATAGGCAATCAATTGCAAGATTTCATCAAGCAAAGGGGTATGTTTTGTCAAAAAAACAAGCTCTGGATGATTTCATTGATAAGGAAATAATAGATAAGGTCAGAGAGGTGCCATCAATACTAAGCAAATCAACACGTGAAAGGTCTGATGAGCCATTACCAGAAAAGAAGAGTGATGTTCTAGAAAGCAATTGTGATCAACAATGGGTGGTTGGGCAGAAAATACTTGCAGGCCCAGCTGTTAATTGTGGTAGTAAACCTAGTGTTCGTACATCTTCTAAAGCAACATCAACCAATTTTAGAGTTTTAAAAGCTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320446" ref_strand="+" ref_description="SGN-E320446 [cTOB-22-N5]">
      <seq>aagttggtgaagaccaacaagaggaaaagtgttgaagaccaccacaaagatggccacttaagtaactcttctgttgctgaagaggaaatattggggaatgaacttgttctggaagaaccaaaaagaaactccactgaaattgcaggagaacagatgacgaaaggttgatcaaactactgcaattgtcatacacacagatcctttgttgcagcagcacttgcatggtaaaagaagagctgagactgtggatttaacatgtagaaaatctaagcgtgtttcaacacaacgtaagtgcggtaaacaggttaacaaagttagagatgagcatatgctgactgactttccaagaatgttaactaggaaatcagcttccttacttgagaatgataatgcagcgggcatgtttgtgcaagttaaaaagccttccacgttaccagatatccttccaaacgggcaacgtaaaagagtattatggcgtcgcgaagaggaagagatgattgaggaaggagttcaaaaattctcatccaaagtaaacaaacacaccccatggagaaaaattctagactttggtcatcatgtgtttgatcattctcgcactccaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="+" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="10035" stop="12660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10335" g_stop="10764" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10765" i_stop="10857" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10858" g_stop="10927" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="502" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10928" i_stop="12255" i_length="1328">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12256" g_stop="12360" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="607" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="+" ref_id="SGN-E320446" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10335" e_stop="10764"/>
          <exon e_start="10858" e_stop="10927"/>
          <exon e_start="12256" e_stop="12360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGGTGAAGACCAACAAGA-GAAAAGTGTTGAAGACCACCACAAAGATGGCCACTTAAGTAACTCTTCTGTTGCTGAAGAGGAAATATTGGGGAATGAACTTGTTCTGGAAGAACCAAAAAGAAACTCCACTGAAATTGCAGGAGAACAGATGAC-AAAGGTTGATCAAACTACTGCAATTGTCATACACACAGATCCTTTGTTGCAGCAGCACTTGCATGGTAAAAGAAGAGCTGAAACTGTGGATTTAACATGTAGAAAATCTAAGCGTGTTTCAACACAACGTAAGTGCGGTAAACAGGTTAACAAAGTTAGAGATGAGCATATGCTGACTGACTTTCCAAGAATGTTAACTAGGAAATCAGCTTCCTTACTTGAGAATGATAATGCAGCGGGCATGTTTGTGCAAGTTAAAAAGCCTTCCACGTTGTAAGTGATCTTATGAAATTTCTTTCAAGTTTGAGCAAATTATCCTATATATTCTTCAACAACTAATAATTTCAACTTTATTTTCTGCTGCAGACCAGATATCCTTCCAAACGGGCAACGTAAAAGAGTATTATGGCGTCGCGAAGAGGAAGAGATGATTGAGGTACATTTCCAGAAATATCTACTGTATAGGTTTGTTTCGGTAGTGTGAGCCAAGGATACATAGTGTCCTTACGTTGGAAGATCTGACATCTATATTTTTAGACTTACTAGGTACTGACTTGATTACAATGATTTGGTAGTTGGGTTAAGTTCATCGACTGAACTTTGATAATGCTATCCTTATACCACCATTTCGTCTTCATCTTTTTTCTTTTGTTCTAGTTTTTGCAACTTCACTTCTGTCTCGTTTTTTCAACTTAACATTTTTAAGGTTCTTTATGCTTAAAAAGCCATATGTTTTGTGCAGCATTGACATCTTACAGACTTTGCAATTGATTTGGCTTGTCGTGTGTAGGTGTTAACCACTGACTTTCTTGTAATGGCTTCAATGGCACGGAATGACTTAATTTTATGCGCTTCATCCATCTTTTCCTGTAAAATTCAGGTCAAATGAGGGTGCATAAAATACGTATGGGAAAGTAATGGAGAAAGAATAAGAAAACTTTAGATATGTGATTTCTTGTGGTTATTCTTGCGTATTGCAATAATTATCCATTTTCCCGGGCTGGTTTACCACCACCTTCAAAACTAAAAGAAGAAAAAAGGGAGATTACAAACTGCAAAGTAAAACAGTCAATAGGACGAGCAAATATGAAAAAGTTTATGTTGATAATTCCTTCTCGCCCCTCTGTTAAGGTCAACCTTGTATCATCCTACAAGCTTCCCATTTGTACTTTGTATCTACCTTGTAAAAAATTCTGCACTTTCCAAACTTCCTGTTTGTTTGTTTTTTTGGTTGGGGTGAGGAAATTTCCCCTTGTTTACCCCTGCATTGCAAAAAAATGTGCTGCACTTGTATAGTAGGTATAGAGAGGAGAACAAAAGTCTGCTTATAGCAAAGGAAACAAAAAATCCTAAATAGTAACCTTTCTCTTGTATCACGGATGATAATGATTTATATGGACAAATATGTTATAGAAAAGTTCCATGGAGACAGAGAATCCGTTATCACATGCTTGCTTTAAAATTACGAAGTATTGAGACAACATTGATGCGCCTGTAAATGCACACAGTGTAGTGGTTCATATTGTTCATGTCAGTTGGCATCACTGGAGAATTTTGAGTGATTCATGAAGCTCAGAAGGCTCTTGTGATGAATGATGACAATATAAGTCTCACAAGCCTAAATACTAGATTGGTTGAGCAACCCACTGGTTTTTCTGTGTGCAGTGTCAGTGAAAAGTGGTTTGTCGCTGATGTTTGCAGTTATCTGATTCATTTGCTGATATGTCTGAGTTCCTGAGTTAATTATGCATGTTGTGGCTGCAGGAAGGAGTTCAAAAATTCTCATCCAAAGTAAACAAAAACACCCCATGGAGAAAAATTCTAGACTTTGGTCATCATGTGTTTGATCATTCTCGCACTCCAACTGAT</genome_strand>
        <mrna_strand>AAGTTGGTGAAGACCAACAAGAGGAAAAGTGTTGAAGACCACCACAAAGATGGCCACTTAAGTAACTCTTCTGTTGCTGAAGAGGAAATATTGGGGAATGAACTTGTTCTGGAAGAACCAAAAAGAAACTCCACTGAAATTGCAGGAGAACAGATGACGAAAGGTTGATCAAACTACTGCAATTGTCATACACACAGATCCTTTGTTGCAGCAGCACTTGCATGGTAAAAGAAGAGCTGAGACTGTGGATTTAACATGTAGAAAATCTAAGCGTGTTTCAACACAACGTAAGTGCGGTAAACAGGTTAACAAAGTTAGAGATGAGCATATGCTGACTGACTTTCCAAGAATGTTAACTAGGAAATCAGCTTCCTTACTTGAGAATGATAATGCAGCGGGCATGTTTGTGCAAGTTAAAAAGCCTTCCACGTT.............................................................................................ACCAGATATCCTTCCAAACGGGCAACGTAAAAGAGTATTATGGCGTCGCGAAGAGGAAGAGATGATTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTTCAAAAATTCTCATCCAAAGTAAACAAACACACCCCATGGAGAAAAATTCTAGACTTTGGTCATCATGTGTTTGATCATTCTCGCACTCCAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349301" ref_strand="+" ref_description="SGN-E349301 [cTOS-1-A13]">
      <seq>caaaattgaaattttagtttggagtttgtgtttatttatgatgtttgagcagaacttggacatttgattttagatttcaaatttctaattctattgaaaaatagaatttgaatttcaagtatgtgattttaattattatttttttataaaaagaaaattatagcttgcctcataagtttttttgcaaaaataggcttatgctcggcttcaagaaattgttcagagggattatgttaaagaatagttagttacgactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="+" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="12770" stop="13626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13070" g_stop="13325" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="257" polyA_stop="266"/>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="+" ref_id="SGN-E349301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13070" e_stop="13325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGAAATTTTAGTTTGGAGTTTGTGTTTATTTATGATGTTTGAGCAGAACTTGGACATTTGATTTTAGATTTCAAATTTCTAATTCTATTGAAAAATAGAATTTGAATTTCAAGTATGTGATTTTAATTATTATTTTTTTATAAAAAGAAAATTATAGCTTGCCTCATAAGTTTTTTTGCAAAAATAGGCTTATGCTCGGCTTCAAGAAATTGTTCAGAGGGATTATGTTAAAGAATAGTTAGTTACGACT</genome_strand>
        <mrna_strand>CAAAATTGAAATTTTAGTTTGGAGTTTGTGTTTATTTATGATGTTTGAGCAGAACTTGGACATTTGATTTTAGATTTCAAATTTCTAATTCTATTGAAAAATAGAATTTGAATTTCAAGTATGTGATTTTAATTATTATTTTTTTATAAAAAGAAAATTATAGCTTGCCTCATAAGTTTTTTTGCAAAAATAGGCTTATGCTCGGCTTCAAGAAATTGTTCAGAGGGATTATGTTAAAGAATAGTTAGTTACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353829" ref_strand="+" ref_description="SGN-E353829 [cTOS-10-D9]">
      <seq>caaaattgaaattttagtttggagtttgtgtttatttatgatgtttgagcagaacttggacatttgattttagatttcaaatttctaattctattgaaaaatagaatttgaatttcaagtatgtgattttaattattatttttttataaaaagaaaattatagcttgcctcataagtttttttgcaaaaataggcttatgctcggcttcaagaaattgttcagagggattatgttaaagaatagttagttacgactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="+" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="12770" stop="13626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13070" g_stop="13325" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="257" polyA_stop="266"/>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="+" ref_id="SGN-E353829" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13070" e_stop="13325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGAAATTTTAGTTTGGAGTTTGTGTTTATTTATGATGTTTGAGCAGAACTTGGACATTTGATTTTAGATTTCAAATTTCTAATTCTATTGAAAAATAGAATTTGAATTTCAAGTATGTGATTTTAATTATTATTTTTTTATAAAAAGAAAATTATAGCTTGCCTCATAAGTTTTTTTGCAAAAATAGGCTTATGCTCGGCTTCAAGAAATTGTTCAGAGGGATTATGTTAAAGAATAGTTAGTTACGACT</genome_strand>
        <mrna_strand>CAAAATTGAAATTTTAGTTTGGAGTTTGTGTTTATTTATGATGTTTGAGCAGAACTTGGACATTTGATTTTAGATTTCAAATTTCTAATTCTATTGAAAAATAGAATTTGAATTTCAAGTATGTGATTTTAATTATTATTTTTTTATAAAAAGAAAATTATAGCTTGCCTCATAAGTTTTTTTGCAAAAATAGGCTTATGCTCGGCTTCAAGAAATTGTTCAGAGGGATTATGTTAAAGAATAGTTAGTTACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356660" ref_strand="+" ref_description="SGN-E356660 [cTOS-21-P18]">
      <seq>caaaattgaaattttagtttggagtttgtgtttatttatgatgtttgagcagaacttggacatttgattttagatttcaaatttctaattctattgaaaaatagaatttgaatttcaagtatgtgattttaattattatttttttataaaaagaaaattatagcttgcctcataagtttttttgcaaaaataggcttatgctcggcttcaagaaattgttcagagggattatgttaaagaatagttagttacgactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="+" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="12770" stop="13626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13070" g_stop="13325" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="257" polyA_stop="266"/>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="+" ref_id="SGN-E356660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13070" e_stop="13325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGAAATTTTAGTTTGGAGTTTGTGTTTATTTATGATGTTTGAGCAGAACTTGGACATTTGATTTTAGATTTCAAATTTCTAATTCTATTGAAAAATAGAATTTGAATTTCAAGTATGTGATTTTAATTATTATTTTTTTATAAAAAGAAAATTATAGCTTGCCTCATAAGTTTTTTTGCAAAAATAGGCTTATGCTCGGCTTCAAGAAATTGTTCAGAGGGATTATGTTAAAGAATAGTTAGTTACGACT</genome_strand>
        <mrna_strand>CAAAATTGAAATTTTAGTTTGGAGTTTGTGTTTATTTATGATGTTTGAGCAGAACTTGGACATTTGATTTTAGATTTCAAATTTCTAATTCTATTGAAAAATAGAATTTGAATTTCAAGTATGTGATTTTAATTATTATTTTTTTATAAAAAGAAAATTATAGCTTGCCTCATAAGTTTTTTTGCAAAAATAGGCTTATGCTCGGCTTCAAGAAATTGTTCAGAGGGATTATGTTAAAGAATAGTTAGTTACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357410" ref_strand="+" ref_description="SGN-E357410 [cTOS-23-F18]">
      <seq>caaaattgaaattttagtttggagtttgtgtttatttatgatgtttgagcagaacttggacatttgattttagatttcaaatttctaattctattgaaaaatagaatttgaatttcaagtatgtgattttaattattatttttttataaaaagaaaattatagcttgcctcataagtttttttgcaaaaataggcttatgctcggcttcaagaaattgttcagagggattatgttaaagaatagttagttacgactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="+" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="12770" stop="13626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13070" g_stop="13325" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="257" polyA_stop="266"/>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="+" ref_id="SGN-E357410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13070" e_stop="13325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGAAATTTTAGTTTGGAGTTTGTGTTTATTTATGATGTTTGAGCAGAACTTGGACATTTGATTTTAGATTTCAAATTTCTAATTCTATTGAAAAATAGAATTTGAATTTCAAGTATGTGATTTTAATTATTATTTTTTTATAAAAAGAAAATTATAGCTTGCCTCATAAGTTTTTTTGCAAAAATAGGCTTATGCTCGGCTTCAAGAAATTGTTCAGAGGGATTATGTTAAAGAATAGTTAGTTACGACT</genome_strand>
        <mrna_strand>CAAAATTGAAATTTTAGTTTGGAGTTTGTGTTTATTTATGATGTTTGAGCAGAACTTGGACATTTGATTTTAGATTTCAAATTTCTAATTCTATTGAAAAATAGAATTTGAATTTCAAGTATGTGATTTTAATTATTATTTTTTTATAAAAAGAAAATTATAGCTTGCCTCATAAGTTTTTTTGCAAAAATAGGCTTATGCTCGGCTTCAAGAAATTGTTCAGAGGGATTATGTTAAAGAATAGTTAGTTACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540911" ref_strand="+" ref_description="SGN-E540911 [TUS-61-G23](-)">
      <seq>caatttgggcattacaaaaaagccggtgccatattttagttttacgtaccgatcagccccaatctactcccaaccttgatatttgccaccttcaaaaatgcttgatgccgatgtcacagatagtgtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggggcaattatagaagcctcacttttgatgggggcagattactccgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgttcgtataggggacaatgtgaagatcattaacaaagccaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttttattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgcggtaaaaattattcgtttaaaataaaaataaatctaccattacacctgacaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="17434" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17134" g_stop="17096" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="0.00"/>
            <acceptor a_prob="0.649" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16990" g_stop="16879" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="151" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="250" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="370" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15689" g_stop="15383" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="677" r_length="307" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15382" i_stop="15098" i_length="285">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15097" g_stop="15083" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="692" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="693" polyA_stop="704"/>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E540911" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17134" e_stop="17096"/>
          <exon e_start="16990" e_stop="16879"/>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15383"/>
          <exon e_start="15097" e_stop="15083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACG-ACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAATTTTCATGAATTCGGATTAGTCAGGTTCCAGTGTGGGTAAATGTATTGAATCATGTTTTAGAATATGAAATTGAAGAAAAACATCAGAAAACAGCTATCAAAATTCGAGTTTATGCACGTTGAAGAGAAAATTACTTGCTATATATATAGAAGAAGATGAAAATAAGAAAACAACACTGTTTCTTTAAATTTAGCTAGAAGAAAAATGA</genome_strand>
        <mrna_strand>CAATTTGGGCATTACAAAAAAGCCGGTGCCATATTTTAG.........................................................................................................-TTTTACGTACCGATCAGCCCCAATCTACTCCCAACCTTGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGGGCAATTATAGAAGCCTCACTTTTGATGGGGGCAGATTACTCCGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGTTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGCCAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCGGTAAAAATTATTCGTTTAAAATAAAAATAAATCTACCATTACACCTGA.............................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736687" ref_strand="+" ref_description="SGN-E736687 [LC06DB02]">
      <seq>cacagatagtgtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttttattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="17215" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16915" g_stop="16879" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="136" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="256" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15689" g_stop="15393" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="553" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15392" i_stop="15098" i_length="295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15097" g_stop="15083" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="568" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="578"/>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E736687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16915" e_stop="16879"/>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15393"/>
          <exon e_start="15097" e_stop="15083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAATTTTCATGAATTCGGATTAGTCAGGTTCCAGTGTGGGTAAATGTATTGAATCATGTTTTAGAATATGAAATTGAAGAAAAACATCAGAAAACAGCTATCAAAATTCGAGTTTATGCACGTTGAAGAGAAAATTACTTGCTATATATATAGAAGAAGATGAAAATAAGAAAACAACACTGTTTCTTTAAATTTAGCTAGAAGAAAAATGA</genome_strand>
        <mrna_strand>CACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCA.......................................................................................................................................................................................................................................................................................................TTANAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299326" ref_strand="+" ref_description="SGN-E299326 [cLET-43-H6]">
      <seq>tactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaagatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttctattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattacaccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="16247" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16180" g_stop="16172" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="129" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15689" g_stop="15387" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="432" r_length="303" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15386" i_stop="15098" i_length="289">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15097" g_stop="15085" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="445" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E299326" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16180" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15387"/>
          <exon e_start="15097" e_stop="15085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAATTTTCATGAATTCGGATTAGTCAGGTTCCAGTGTGGGTAAATGTATTGAATCATGTTTTAGAATATGAAATTGAAGAAAAACATCAGAAAACAGCTATCAAAATTCGAGTTTATGCACGTTGAAGAGAAAATTACTTGCTATATATATAGAAGAAGATGAAAATAAGAAAACAACACTGTTTCTTTAAATTTAGCTAGAAGAAAAAT</genome_strand>
        <mrna_strand>TACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAAGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTCTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACAC.................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370775" ref_strand="+" ref_description="SGN-E370775 [TUS-28-F22](-)">
      <seq>tgatgggtactgggaagatattggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacccaacctcgatatttgccaccttcaaaaatgcttgatgccgatgtcacagatagtgtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttttattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattacaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="17482" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17182" g_stop="17096" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16990" g_stop="16879" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="199" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="298" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="418" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15689" g_stop="15388" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="720" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15387" i_stop="15098" i_length="290">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15097" g_stop="15086" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="732" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E370775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17182" e_stop="17096"/>
          <exon e_start="16990" e_stop="16879"/>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15388"/>
          <exon e_start="15097" e_stop="15086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAATTTTCATGAATTCGGATTAGTCAGGTTCCAGTGTGGGTAAATGTATTGAATCATGTTTTAGAATATGAAATTGAAGAAAAACATCAGAAAACAGCTATCAAAATTCGAGTTTATGCACGTTGAAGAGAAAATTACTTGCTATATATATAGAAGAAGATGAAAATAAGAAAACAACACTGTTTCTTTAAATTTAGCTAGAAGAAAAA</genome_strand>
        <mrna_strand>TGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACA..................................................................................................................................................................................................................................................................................................CCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712743" ref_strand="+" ref_description="SGN-E712743 [FB05CG11]">
      <seq>attggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacccaacctcgatatttgccaccttcaaaaatgcttgatgccgatgtcacagatagtgtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttttattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattacaccagatctgctttgatctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="17463" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17163" g_stop="17096" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16990" g_stop="16879" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="180" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="279" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="399" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15689" g_stop="15370" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="719" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15369" i_stop="15098" i_length="272">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15097" g_stop="15086" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="731" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E712743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17163" e_stop="17096"/>
          <exon e_start="16990" e_stop="16879"/>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15370"/>
          <exon e_start="15097" e_stop="15086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAATTTTCATGAATTCGGATTAGTCAGGTTCCAGTGTGGGTAAATGTATTGAATCATGTTTTAGAATATGAAATTGAAGAAAAACATCAGAAAACAGCTATCAAAATTCGAGTTTATGCACGTTGAAGAGAAAATTACTTGCTATATATATAGAAGAAGATGAAAATAAGAAAACAACACTGTTTCTTTAAATTTAGCTAGAAGAAAAA</genome_strand>
        <mrna_strand>ATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCT................................................................................................................................................................................................................................................................................CAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317270" ref_strand="+" ref_description="SGN-E317270 [cTOA-28-N15]">
      <seq>gtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttttattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattacaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="17205" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16905" g_stop="16879" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="126" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="246" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15689" g_stop="15388" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="548" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15387" i_stop="15098" i_length="290">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15097" g_stop="15086" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="560" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E317270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16905" e_stop="16879"/>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15388"/>
          <exon e_start="15097" e_stop="15086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAATTTTCATGAATTCGGATTAGTCAGGTTCCAGTGTGGGTAAATGTATTGAATCATGTTTTAGAATATGAAATTGAAGAAAAACATCAGAAAACAGCTATCAAAATTCGAGTTTATGCACGTTGAAGAGAAAATTACTTGCTATATATATAGAAGAAGATGAAAATAAGAAAACAACACTGTTTCTTTAAATTTAGCTAGAAGAAAAA</genome_strand>
        <mrna_strand>GTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACA..................................................................................................................................................................................................................................................................................................CCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317481" ref_strand="+" ref_description="SGN-E317481 [cTOA-28-N18]">
      <seq>gtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttttattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattacaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="17205" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16905" g_stop="16879" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="126" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="246" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15689" g_stop="15388" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="548" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15387" i_stop="15098" i_length="290">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15097" g_stop="15086" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="560" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E317481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16905" e_stop="16879"/>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15388"/>
          <exon e_start="15097" e_stop="15086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAATTTTCATGAATTCGGATTAGTCAGGTTCCAGTGTGGGTAAATGTATTGAATCATGTTTTAGAATATGAAATTGAAGAAAAACATCAGAAAACAGCTATCAAAATTCGAGTTTATGCACGTTGAAGAGAAAATTACTTGCTATATATATAGAAGAAGATGAAAATAAGAAAACAACACTGTTTCTTTAAATTTAGCTAGAAGAAAAA</genome_strand>
        <mrna_strand>GTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACA..................................................................................................................................................................................................................................................................................................CCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551668" ref_strand="+" ref_description="SGN-E551668 [cTSB-1-H18]">
      <seq>agagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttttattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattacaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="16523" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16223" g_stop="16172" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="172" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15689" g_stop="15388" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="474" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15387" i_stop="15098" i_length="290">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15097" g_stop="15086" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="486" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E551668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16223" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15388"/>
          <exon e_start="15097" e_stop="15086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAATTTTCATGAATTCGGATTAGTCAGGTTCCAGTGTGGGTAAATGTATTGAATCATGTTTTAGAATATGAAATTGAAGAAAAACATCAGAAAACAGCTATCAAAATTCGAGTTTATGCACGTTGAAGAGAAAATTACTTGCTATATATATAGAAGAAGATGAAAATAAGAAAACAACACTGTTTCTTTAAATTTAGCTAGAAGAAAAA</genome_strand>
        <mrna_strand>AGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACA..................................................................................................................................................................................................................................................................................................CCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713563" ref_strand="+" ref_description="SGN-E713563 [FB08DH11]">
      <seq>ccatgaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttttattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattacaccagatctgctttgatctcacttttgctttatgtttacttgtgtttcatcatctctgtatgtttatagtgaaaaagaattatttgttcttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="16573" stop="14992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="104" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="224" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15689" g_stop="15282" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="632" r_length="408" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E713563" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAATTTTCATGAA</genome_strand>
        <mrna_strand>AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288416" ref_strand="+" ref_description="SGN-E288416 [cLES-16-N17]">
      <seq>gaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttttattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattacaccagatctgctttgatctcacttttgctttatgtttacttgtgtttcatcatctctgtatgtttatagtgaaaaagaattatttgttcttcatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="16507" stop="14992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16207" g_stop="16172" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="156" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15689" g_stop="15284" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="562" r_length="406" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E288416" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16207" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAATTTTCATG</genome_strand>
        <mrna_strand>GAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284006" ref_strand="-" ref_description="SGN-E284006 [cLER-13-P18]">
      <seq>tgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgctcgtatagggcacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaatcagccatgaggcacaaacgtgccgaagttttattttcctatgctgtagaaatttagtgtacatcctgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattacaccagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="16204" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15904" g_stop="15823" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15689" g_stop="15377" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="395" r_length="313" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E284006" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284006" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15904" e_stop="15823"/>
          <exon e_start="15689" e_stop="15377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCT</genome_strand>
        <mrna_strand>TGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGCACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAATCAGCCATGAGGCACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATTTAGTGTACATCCTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693767" ref_strand="+" ref_description="SGN-E693767 [LH_Ea02C21](-)">
      <seq>agtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagtttcctggggccaatgattttggtagtgaagttattcctggtgcaacttcacttgggatgagagtgcaagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctataatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacccaacctcgatatttgccaccatcaaaaatgcttgatgccgatgtcacagatagtgtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgcccgtataggggacaatgtgaagatcattaacaaagacaacgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaatgcgttttaacttggttgccctccaagattttggctaaacagccatgaggtacaaacatgccgaagttttattttcctgtgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctagaaataaaaataaatctaccattacaccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18015" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17715" g_stop="17596" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="224" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="0.98"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16990" g_stop="16879" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="336" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="435" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="555" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15689" g_stop="15384" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="862" r_length="307" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="863" polyA_stop="879"/>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E693767" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17715" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16879"/>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTA-AAATAAAAATAAATCTACCATTACACCAG</genome_strand>
        <mrna_strand>AGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCACTTGGGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTATAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCATCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCCCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAACGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAATGCGTTTTAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACATGCCGAAGTTTTATTTTCCTGTGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAGAAATAAAAATAAATCTACCATTACACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744528" ref_strand="+" ref_description="SGN-E744528 [GI|1325983]">
      <seq>ggggaagtgcaatcacactctaccacacactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggatccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggagaatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattactgttgccgcactgccaatggacgagaagcgtgccactgcattcggtctcatgaagattgacgaagaaggacgcattattgaatttgcagagaaaccgcaaggagagcaactgcaagcaatgaaagtggatactaccattttaggtcttgatgacaagagagctaaagaaatgccttttatcgccagtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagttccctggggccaatgattttggtagtgaagttattcctggtgcaacttcacttgggatgagagtgcaagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacccaacctcgatatttgccaccttcaaaaatgcttgatgccgatgtcacagatagtgtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgagaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtctatacaaaagagccattatcgacaagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggatcgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcattataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttttattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20206" stop="15085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19910" g_stop="19574" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="634" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17869" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="904" r_length="270" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17775" g_stop="17596" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="905" r_stop="1084" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1085" r_stop="1188" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16990" g_stop="16879" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1189" r_stop="1300" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1301" r_stop="1399" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1400" r_stop="1519" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15689" g_stop="15385" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1520" r_stop="1824" r_length="305" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E744528" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19910" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17869"/>
          <exon e_start="17775" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16879"/>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAGTGCAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAAGTATGACTATCATAGTCCTAATGCTTTTCAATTCAGAACTACTCAAGAAAGAATTTATTAGCATGTGTTAATTCTTGTTTTGATGTATTTCAGGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCA</genome_strand>
        <mrna_strand>GGGGAAGTGCAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGATCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGAATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACTGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGACGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAACTGCAAGCAATGAAA.............................................................................................GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTCCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCACTTGGGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGAGAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCTATACAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATCGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCATTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217040" ref_strand="+" ref_description="SGN-E217040 [cLEL-1-M10](-)">
      <seq>tgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaacgcgttataacttggttgccctccaagattttggctaaacagccatgaggtacaaacgtgccgaagttttattttcctatgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacctggttgctgtaaaaattattcgtctaaaataaaaataaatctaccattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="16204" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15904" g_stop="15823" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15689" g_stop="15390" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="382" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="383" polyA_stop="401"/>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E217040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15904" e_stop="15823"/>
          <exon e_start="15689" e_stop="15390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTA</genome_strand>
        <mrna_strand>TGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689927" ref_strand="+" ref_description="SGN-E689927 [LH_Ea02C21]">
      <seq>cggacgcattattgaatttgcagagaaaccgcaaggagagcaattgcaagcaatgaaagtggatactaccattttaggtcttgatgacaagagagctaaagaaatgccttttatcgccagtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagtttcctggggccaatgattttggtagtgaagttattcctggtgcaacttcacttgggatgagagtgcaagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctataatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacccaacctcgatatttgccaccatcaaaaatgcttgatgccgatgtcacagatagtgtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcgacaagaatgcccgtataggggacaatgtgaagatcattaacaaagacaacgttcaagaagcggctagggaaacagatggatacttcatcaagagtgggattgtcactgtcatcaaggatgctttgattccaagtggaatcgtcatttaaaggaatgcgttttaacttggttgccctccaagattttggctaaacagccatgaagtacaaacatgccgaagttttatttttctgtgctgtagaaatctagtgtacatcttgcttttatgatacttctcattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18225" stop="15139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17926" g_stop="17869" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17775" g_stop="17596" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="238" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="342" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="0.98"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16990" g_stop="16879" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="454" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="553" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="673" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15689" g_stop="15439" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="924" r_length="251" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E689927" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17926" e_stop="17869"/>
          <exon e_start="17775" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16879"/>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAAGTATGACTATCATAGTCCTAATGCTTTTCAATTCAGAACTACTCAAGAAAGAATTTATTAGCATGTGTTAATTCTTGTTTTGATGTATTTCAGGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACC</genome_strand>
        <mrna_strand>CGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA.............................................................................................GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCACTTGGGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTATAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCATCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCCCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAACGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAATGCGTTTTAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAAGTACAAACATGCCGAAGTTTTATTTTTCTGTGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731787" ref_strand="+" ref_description="SGN-E731787 [LA28AG06]">
      <seq>tatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcactgccaatggacgagaagcgtgccactgcattcggtctcatgaagattgatgaagaaggacgcattattgaatttgcagagaaaccgcaaggagagcaattgcaagcaatgaaagtggatactaccattttaggtcttgatgacaagagagctaaagaaatgccttttatcgccagtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagtttcctggggccaatgattttggtagtgaagttattcctggtgcaacttcatttgggatgagagtgcaagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacccaacctcgatatttgccaccttcaaaaatgcttgatgccgatgtcacagatagtgtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattggcatcggcaagaattgtcacatcaaaagagccattatcngacagaatgctcgtataggggacaatgtgaagatcattaacaaagacaatgttcaagaagcggctagggaaacagatggatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18351" stop="15337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18051" g_stop="17869" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17775" g_stop="17596" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="363" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="467" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16990" g_stop="16879" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="579" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="678" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15942" g_stop="15823" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="798" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15689" g_stop="15637" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="851" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E731787" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18051" e_stop="17869"/>
          <exon e_start="17775" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16879"/>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15823"/>
          <exon e_start="15689" e_stop="15637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAAGTATGACTATCATAGTCCTAATGCTTTTCAATTCAGAACTACTCAAGAAAGAATTTATTAGCATGTGTTAATTCTTGTTTTGATGTATTTCAGGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATC-GACAAGAATGCTCGTATAGGGGACAATGTGAAGGTTAAATTCCTTAAACTTTTACACTTCTGACTTAGTGTCATTTGAACATGCAATTGATGTGTAATGTTTTTTCTCGATATCATGTATCCATATTCATAGCATGAGTTCCTAATAATAAATTTTCTTTTGTCAGATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTT</genome_strand>
        <mrna_strand>TATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA.............................................................................................GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCNGAC-AGAATGCTCGTATAGGGGACAATGTGAAG.....................................................................................................................................ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706182" ref_strand="+" ref_description="SGN-E706182 [FA29BA04]">
      <seq>ctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcactgccaatggacgagaagcgtgccactgcattcggtctcatgaagattgatgaagaaggacgcattattgaatttgcagagaaaccgcaaggagagcaattgcaagcaatgaaagtggatactaccattttaggtcttgatgacaagagagctaaagaaatgccttttatcgccagtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagtttcctggggccaatgattttggtagtgaagttattcctggtgcaacttcatttgggatgagagtgcaagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacccaacctcgatatttgccaccttcaaaaatgcttgatgccgatgtcacagatagtgtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattactacgagactgatgctgacaggaagctgctggctgcaaagggcagtgtcccaattgccatcggcaagaattgtcacatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18758" stop="15568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18458" g_stop="18424" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18138" g_stop="17869" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="305" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17775" g_stop="17596" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="485" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="589" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16990" g_stop="16879" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="701" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16270" g_stop="16172" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="800" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15942" g_stop="15868" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="875" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E706182" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18458" e_stop="18424"/>
          <exon e_start="18138" e_stop="17869"/>
          <exon e_start="17775" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16879"/>
          <exon e_start="16270" e_stop="16172"/>
          <exon e_start="15942" e_stop="15868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAAGTATGACTATCATAGTCCTAATGCTTTTCAATTCAGAACTACTCAAGAAAGAATTTATTAGCATGTGTTAATTCTTGTTTTGATGTATTTCAGGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAGGTAATGCTAATAATTCTTTGATTACCAGAAAACATTTCTAAAACTAATATACACGCGAACATGAATTTAACATTCTTCGCTTATTACACTTGCTGTGTATATGGTTTACTGCGGAGCAACTTGCCTTAAGAGTCGAACTACACATGATAAAGAAAATACTGAGCTTGTGGTTTCCTTACTCTATTCACTTATTATAACGGACTCGCTTTCTGACCCATTATTGGTTCAGACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAA</genome_strand>
        <mrna_strand>CTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA.............................................................................................GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG.....................................................................................................................................................................................................................................ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGCCATCGGCAAGAATTGTCACATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272369" ref_strand="+" ref_description="SGN-E272369 [cLEM-19-M11]">
      <seq>gagagcaattgcaagcaatgaaagtggatactaccattttaggtcttgatgacaagagagctaaagaaatgccttttatcgccagtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagtttcctggggccaatgattttggtagtgaagttattcctggtgcaacttcatttgggatgagagtgcaagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacccaacctcgatatttgccaccttcaaaaatgcttgatgccgatgtcacagatagtgtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcatatcagagggagcaattatagaagactcacttttgatgggggcagattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18191" stop="15876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17891" g_stop="17869" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93">
            <donor d_prob="0.894" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17775" g_stop="17596" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="203" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="307" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16990" g_stop="16879" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="419" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16270" g_stop="16176" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="514" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E272369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17891" e_stop="17869"/>
          <exon e_start="17775" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16879"/>
          <exon e_start="16270" e_stop="16176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCAATTGCAAGCAATGAAAGTATGACTATCATAGTCCTAATGCTTTTCAATTCAGAACTACTCAAGAAAGAATTTATTAGCATGTGTTAATTCTTGTTTTGATGTATTTCAGGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTA</genome_strand>
        <mrna_strand>GAGAGCAATTGCAAGCAATGAAA.............................................................................................GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267951" ref_strand="+" ref_description="SGN-E267951 [cLEI-12-P6]">
      <seq>gaagaaggacgcattattgaatttgcagagaaaccgcaaggagagcaattgcaagcaatgaaagtggatactaccattttaggtcttgatgacaagagagctaaagaaatgccttttatcgccagtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagtttcctggggccaatgattttggtagtgaagttattcctggtgcaacttcatttgggatgagagtgcaagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacccaacctcgatatttgccaccttcaaaaatgcttgatgccgatgtcacagatagtgtcattggtgaaggttgtgtgatcaagaactgtaagattcaccattccgtggttgggctcagatcatgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18231" stop="15926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17931" g_stop="17869" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17775" g_stop="17596" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="243" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="347" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16990" g_stop="16879" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="459" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16270" g_stop="16226" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="504" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E267951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17931" e_stop="17869"/>
          <exon e_start="17775" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16879"/>
          <exon e_start="16270" e_stop="16226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAAGTATGACTATCATAGTCCTAATGCTTTTCAATTCAGAACTACTCAAGAAAGAATTTATTAGCATGTGTTAATTCTTGTTTTGATGTATTTCAGGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAGGTAACTAGTTATTGTTTCAAGGCTCCTATATTTCTAAGTTGCAGTCTTGATAGCAAATATGTGAGGCATATCTCTGACATGTTCAATATTTTCTGTGACCTCATCCATCTTTCTCAAAAATAATAAAGAAGATAAAGTAAAGTATATTGGACTCTCTTCTCTCTGAGGCATGCTTGCCTTGCATTTTCTTCTCAGTTTGATTTTCCATCATGGTTGGAGAGGGCTAAATATTGTTGATATTATAGATCTTGACTTATTAGAGACAATTGGTCTGAAATATAACATCTAAAAGTTGGCTCTTTGATTAAGTTGAGGCGCACAAAATTTAAAACTCACTTACTAATATTGGAGAATCGAAGTAGTCTTGGAACAACGTTAAAGTTGTCTCTTGTGTGTGTAGAGGGTAACAGGTCCGAGACGTGGAATCAACCTTTAATGCTTTGGGTAGGTTGTCTACATTATACCCTGGGTTTGGACCTTTTCTGGACCCTAAGTGAATGCAATATGCTTTTCACCATTTTTTTTCATTTTTCATCATACAGTGCTCCAGAAAATGCAGAAAAATAGTATAGCACTACATAGTTATTAATCAATATTTCTGTTTGCAGAACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATA</genome_strand>
        <mrna_strand>GAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA.............................................................................................GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698640" ref_strand="+" ref_description="SGN-E698640 [FA07AE08]">
      <seq>ccccttaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcactgccaatggacgagaagcgtgccactgcattcggtctcatgaagattgatgaagaaggacgcattattgaatttgcagagaaaccgcaaggagagcaattgcaagcaatgaaagtggatactaccattttaggtcttgatgacaagagagctaaagaaatgccttttatcgccagtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagtttcctggggccaatgattttggtagtgaagttattcctggtgcaacttcatttgggatgagagtgcaagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacccaacctccatatttgccaccttcaaaaatgcttgatgccgatgtcccaaatactgtcattggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18788" stop="16594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18494" g_stop="18424" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18138" g_stop="17869" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="341" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17775" g_stop="17596" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="521" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="625" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16990" g_stop="16894" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="722" r_length="97" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E698640" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18494" e_stop="18424"/>
          <exon e_start="18138" e_stop="17869"/>
          <exon e_start="17775" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAAGTATGACTATCATAGTCCTAATGCTTTTCAATTCAGAACTACTCAAGAAAGAATTTATTAGCATGTGTTAATTCTTGTTTTGATGTATTTCAGGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAA</genome_strand>
        <mrna_strand>CCCCTTAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA.............................................................................................GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCCATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCCCAAATACTGTCATTGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292996" ref_strand="+" ref_description="SGN-E292996 [cLET-12-B17]">
      <seq>cgcactgccaatggacgagaagcgtgccactgcattcggtctcatgaagattgatgaagaaggacgcattattgaatttgcagagaaaccgcaaggagagcaattgcaagcaatgaaagtggatactaccattttaggtcttgatgacaagagagctaaagaaatgccttttatcgccagtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagtttcctggggccaatgattttggtagtgaagttattcctggtgcaacttcatttgggatgagagtgcgagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacccaacctcgatatttgccaccttcaaaaatgcttgatgccgatgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18286" stop="16613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17986" g_stop="17869" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17775" g_stop="17596" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="298" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="402" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16990" g_stop="16913" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="480" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E292996" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17986" e_stop="17869"/>
          <exon e_start="17775" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAAGTATGACTATCATAGTCCTAATGCTTTTCAATTCAGAACTACTCAAGAAAGAATTTATTAGCATGTGTTAATTCTTGTTTTGATGTATTTCAGGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCAC</genome_strand>
        <mrna_strand>CGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA.............................................................................................GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCGAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338059" ref_strand="+" ref_description="SGN-E338059 [cTOE-14-J20]">
      <seq>caaggagagcaattgcacgcaatgaaagtggatactaccattttaggtcttgatgacaagagagctaaagaaatgccttttatcgccagtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagtttcctggggccaatgattttggtagtgaagttattcctggtgcaacttcatttgtgatgaaagtgcaagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcaggcccaatctacacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18195" stop="16657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17895" g_stop="17869" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93">
            <donor d_prob="0.894" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17775" g_stop="17596" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="207" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="311" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16990" g_stop="16957" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="345" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E338059" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17895" e_stop="17869"/>
          <exon e_start="17775" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAGAGCAATTGCAAGCAATGAAAGTATGACTATCATAGTCCTAATGCTTTTCAATTCAGAACTACTCAAGAAAGAATTTATTAGCATGTGTTAATTCTTGTTTTGATGTATTTCAGGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACCCAA</genome_strand>
        <mrna_strand>CAAGGAGAGCAATTGCACGCAATGAAA.............................................................................................GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGTGATGAAA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGGCCCAATCTACACCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270806" ref_strand="+" ref_description="SGN-E270806 [cLEM-6-K11]">
      <seq>ctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttggagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcactgccaatggacgagaagcgtgccactgcattcggtctcatgaagattgatgaagaaggacgcattattgaatttgcagagaaaccgcaaggagagcaattgcaagcaatgaaagtggatactaccattttaggtcttgatgacaagagagctaaagaaatgccttttatcgccagtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagtttcctggggccaatgattttggtagtgaagttattcctggtgcaacttcatttgggatgagagtgcaagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgatcagccccaatctacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18778" stop="16660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18478" g_stop="18424" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18138" g_stop="17869" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="325" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17775" g_stop="17596" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="505" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="609" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16990" g_stop="16960" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="640" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E270806" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18478" e_stop="18424"/>
          <exon e_start="18138" e_stop="17869"/>
          <exon e_start="17775" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAAGTATGACTATCATAGTCCTAATGCTTTTCAATTCAGAACTACTCAAGAAAGAATTTATTAGCATGTGTTAATTCTTGTTTTGATGTATTTCAGGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGATCAGCCCCAATCTACACC</genome_strand>
        <mrna_strand>CTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTGGAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA.............................................................................................GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGATCAGCCCCAATCTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370776" ref_strand="+" ref_description="SGN-E370776 [TUS-28-F22]">
      <seq>ctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcactgccaatggacgagaagcgtgccactgcattcggtctcatgaagattgatgaagaaggacgcattattgaatttgcagagaaaccgcaaggagagcaattgcaagcaatgaaagtggatactaccattttaggtcttgatgacaagagagctaaagaaatgccttttatcgccagtatgggtatatatgtcattagcaaagacgtgatgttaaacctacttcgtgacaagtttcctggggccaatgattttggtagtgaagttattcctggtgcaacttcatttgggatgagagtgcaagcttatttatatgatgggtactgggaagatattggtaccattgaagctttctacaatgccaatttgggcattacaaaaaagccggtgccagattttagcttttacgaccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18778" stop="16677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18478" g_stop="18424" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18138" g_stop="17869" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="325" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17775" g_stop="17596" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="505" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17199" g_stop="17096" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="609" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16990" g_stop="16977" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="623" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E370776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18478" e_stop="18424"/>
          <exon e_start="18138" e_stop="17869"/>
          <exon e_start="17775" e_stop="17596"/>
          <exon e_start="17199" e_stop="17096"/>
          <exon e_start="16990" e_stop="16977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAAGTATGACTATCATAGTCCTAATGCTTTTCAATTCAGAACTACTCAAGAAAGAATTTATTAGCATGTGTTAATTCTTGTTTTGATGTATTTCAGGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGAGTATGTACTTTCTCTAGAACCTACACTTCATGTTACTTTTACTTATCATGAAAGTTGGAATATGAAATATACACTTTTTGCTGTGTTCAATGCATAAAAAAAGTTGCATCTTCTGACCTTTACTCTAGAGCAATAGGGCCTTACTGTCTCAAGTTCTTGAACTCTCTTCCAAATATGGTTATGGTTATGAAATGAGCTCTCTTTTGTCTTCTGCTTTCGTGTGTTGCCCTTCTCAAGTTTTTCTTTATTTTTTTTCTTCTCTTTGTTGCTTTGCTTGTTCTGGTCATCAATGTGGAAACTCAAAAAAGAATGATGCATCGCGCTCAATTTCTTTTTAAGATAATGGTCACTTTGGTTAGTGTTGTTTCTAGAAGTCTTATGTATCTGTGTTCTCAGGTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAGGTAATTTTGCTGATCTCAAGGAGATGGTTCTCTATAGTTACCTTGCGCTGTTATCCACTCACTTTGATTTGACACTAATATTGTTGTCTTCAATATTTACTGAAGCTTTTACGACCGAT</genome_strand>
        <mrna_strand>CTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA.............................................................................................GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG.........................................................................................................CTTTTACGACCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727645" ref_strand="+" ref_description="SGN-E727645 [LA15BC04]">
      <seq>accacacactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcactgccaatggacgagaagcgtgccactgcattcggtctcatgaagattgatgaagaaagacgcattattgaatttgcagagaaaccgcaaggagagcaattgcaagcaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20189" stop="17569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19889" g_stop="19574" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="613" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17869" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="883" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E727645" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19889" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA</genome_strand>
        <mrna_strand>ACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAAGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268869" ref_strand="+" ref_description="SGN-E268869 [cLEM-4-B9]">
      <seq>caaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcactgccaatggacgagaagcgtgccactgcattcggtctcatgaagattgatgaagaaggacgcattattgaatttgcagagaaaccgcaaggagagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18953" stop="17583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18653" g_stop="18424" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18138" g_stop="17883" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="486" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E268869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18653" e_stop="18424"/>
          <exon e_start="18138" e_stop="17883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAAT</genome_strand>
        <mrna_strand>CAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699864" ref_strand="+" ref_description="SGN-E699864 [FA11BG02]">
      <seq>ggcacacactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcactgccaatggacgagaagcgtgccactgcattcggtctcatgaagattgatgaagaaggacgcattattgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20187" stop="17609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19889" g_stop="19574" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="613" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17909" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="843" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E699864" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19889" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATT</genome_strand>
        <mrna_strand>GGCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705678" ref_strand="+" ref_description="SGN-E705678 [FA27DD01]">
      <seq>gagggttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcactgccaatggacgagaagcgtgccactgcattcggtctcatgaagattgatgaagaaagacgcattattgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20163" stop="17609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19867" g_stop="19574" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="591" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17909" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="821" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E705678" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19867" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATT</genome_strand>
        <mrna_strand>GAGGGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAAGACGCATTATTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706763" ref_strand="+" ref_description="SGN-E706763 [FA30DD10]">
      <seq>caagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagccccccagggaaacagatgctgatattaccgttgccgcactgccaatggacgagaagcgtgcccctgcattcggtctcatgaagattgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20155" stop="17630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19855" g_stop="19574" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="579" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17930" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="789" r_length="210" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E706763" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19855" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAG-CCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGA</genome_strand>
        <mrna_strand>CAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCCCCAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCCCTGCATTCGGTCTCATGAAGATTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339045" ref_strand="+" ref_description="SGN-E339045 [cTOF-6-L3]">
      <seq>gcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggcttttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctnggagatcatctgtatcgaatggattatgaaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcactgccaatggacgagaagcgtgccactgcatttcggtctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20156" stop="17643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19856" g_stop="19574" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="581" r_length="298" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17943" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="781" r_length="200" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E339045" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19856" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGC-TTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGAC-AATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCT-GGAGATCATCTGTATCGAATGGATTATG-AAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCA-TTCGGTCTCA</genome_strand>
        <mrna_strand>GCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTNGGAGATCATCTGTATCGAATGGATTATGAAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTTCGGTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699677" ref_strand="+" ref_description="SGN-E699677 [FA10DE11]">
      <seq>cgatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgcccgcctgccaatggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20170" stop="17670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19872" g_stop="19574" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="595" r_length="296" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17970" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="764" r_length="169" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E699677" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19872" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACG</genome_strand>
        <mrna_strand>CGATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGC-AAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCCGCCTGCCAATGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703666" ref_strand="+" ref_description="SGN-E703666 [FA22AE08]">
      <seq>cggctgtaattaagtgcaatcacactctaccacacactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattccagcccccagggaaacagatgctgatattaccgttgccgcactgccaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20217" stop="17672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19917" g_stop="19574" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="641" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17972" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="808" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E703666" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19917" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTGTAATTAAGTGCAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGA</genome_strand>
        <mrna_strand>CGGCTGTAATTAAGTGCAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCCAGCCCCCAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322889" ref_strand="+" ref_description="SGN-E322889 [cTOB-30-P8]">
      <seq>tatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcactgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20176" stop="17678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19876" g_stop="19574" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="600" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17978" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="761" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E322889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19876" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCC</genome_strand>
        <mrna_strand>TATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317132" ref_strand="+" ref_description="SGN-E317132 [cTOA-27-H20]">
      <seq>tcacactctaccacacactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattaccgttgccgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20198" stop="17681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19898" g_stop="19574" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="622" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17981" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="780" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E317132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19898" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACT</genome_strand>
        <mrna_strand>TCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284603" ref_strand="+" ref_description="SGN-E284603 [cLES-3-E24]">
      <seq>cagaatttacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctataactaaaaaaagagcaaaacctgcggttccacttggagcatattatcgtctgattgacattcccgtaagcaatcgcttgaacagtaacatatgcaagatctatgttctcacacaattcacactctgcctgtctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagctttggttgctcaacaaaggccggagaaccccgattggttccaggacactgcggacgctgtcagacaatatctgcggttggttgaggagcataatgttcttgaataccttatacttgctggacatcatctgtgtcgaatggattatgaaaagtttattcaagcccacagggaaacagatgctgatattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="19912" stop="17693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19612" g_stop="19574" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="337" r_length="298" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17993" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="483" r_length="146" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E284603" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19612" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCA-ACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTAC</genome_strand>
        <mrna_strand>CAGAATTTACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTATAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCATATTATCGTCTGATTGACATTCCCGTAAGCAATCGCTTGAACAGTAACATATGCAAGATCTATGTTCTCACACAATTCACACTCTGCCTGTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGCTTTGGTTGCTCAACAAAGGCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GACACTGCGGACGCTGTCAGACAATATCTGCGGTTGGTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGACATCATCTGTGTCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268818" ref_strand="+" ref_description="SGN-E268818 [cLEM-4-N15]">
      <seq>aagaagtccattgattgtgtctcctaaagctgtttctgattcgcagaattcacagacatgtctggacccagatgctatcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatgaaaagtttattcaagcccacaaggaaacagatgctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="19955" stop="17697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19655" g_stop="19574" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="379" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="17997" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="521" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E268818" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19655" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="17997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATA</genome_strand>
        <mrna_strand>AAGAAGTCCATTGATTGTGTCTCCTAAAGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTATCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAAGGAAACAGATGCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554464" ref_strand="+" ref_description="SGN-E554464 [cTSC-4-G14]">
      <seq>cacagtctctatagtatctatagttgagagcaagctttggttgacagtggcggcttccattggagccttaaaatcttcgccttcttcccacaattgcatcaatgagagaagaaatgattctacgcgggcagtatccaggagaaatctctcgttttcgtcttctcatctcgccggaaacaaggtgatgcctgtatcgtccttacgttcccaaagagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctaacaggagtgttttgggaattattcttggaggtggagctgggacgccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgctgtgaacggtaacatatccgagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacactgtcagacaatatctgtggatgtttgaggagcataatgttctagaataccttatacttgctggagatcatctgtatcggagggattatgaaaagtttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20185" stop="17724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19885" g_stop="19574" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="612" r_length="299" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="18024" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="727" r_length="115" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E554464" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19885" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="18024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTT-GTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGAC-CCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCT-TGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTC</genome_strand>
        <mrna_strand>CACAGTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGGTTGACAGTGGCGGCTTCCATTGGAGCCTTAAAATCTTCGCCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACGCGGGCAGTATCCAGGAGAAATCTCTCGTTTTCGTCTTCTCATCTCGCCGGAAACAAGGTGATGCCTGTATCGTCCTTACGTTCCCAAAGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAACAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACGCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTGTGAACGGTAACATATCCGAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACACTGTCAGACAATATCTGTGGATGTTTGAGGAGCATAATGTTCTAGAATACCTTATACTTGCTGGAGATCATCTGTATCGGAGGGATTATGAAAAGTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331933" ref_strand="+" ref_description="SGN-E331933 [cTOD-16-A12]">
      <seq>ctcgtgccgaatcggcacgaggcacacactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcataatgttcttgaataccttatacttgctggagatcatctgtatcgaatggattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20187" stop="17736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19887" g_stop="19574" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="336" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="633" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="18036" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="736" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E331933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19887" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="18036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATG</genome_strand>
        <mrna_strand>CACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728991" ref_strand="+" ref_description="SGN-E728991 [LA19CE04]">
      <seq>cacactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatctgtggttgtttgaggagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20185" stop="17791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19885" g_stop="19574" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="609" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="18091" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="657" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E728991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19885" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="18091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCAT</genome_strand>
        <mrna_strand>CACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269938" ref_strand="+" ref_description="SGN-E269938 [cLEM-7-M11]">
      <seq>ttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaacgagggctttgtggaagttcttgctgctcaacaaagtccggagaaccccgattggttccagggcactgcggacgctgtcagacaatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20146" stop="17810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19846" g_stop="19574" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18424" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="570" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18138" g_stop="18110" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="599" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E269938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19846" e_stop="19574"/>
          <exon e_start="18720" e_stop="18424"/>
          <exon e_start="18138" e_stop="18110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAGGTAAATTCTCATTCCCGCTGCATAGAGTTCACTTAAAACTACTGTTATTGTTATTATACGAGGATACAAATATCAACTCAATTACTATGAAGCATACAATTAGCACTTAAACTACCTATATCTTTGTATATTCTGAAGAGCTGTTTAGAAATGCATTATTTGAGTTGTAACTCGGGTGTCATTCGTGCATGACACCTTAAATTAAACTTCTATTTATGCTTTATTGCTGCTCTGAACTAGTTTACTTCACAAACTGGCATAACAAGTGTTGATGCTTGTCTGTAGGGCACTGCGGACGCTGTCAGACAATATCT</genome_strand>
        <mrna_strand>TTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG.............................................................................................................................................................................................................................................................................................GGCACTGCGGACGCTGTCAGACAATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212265" ref_strand="+" ref_description="SGN-E212265 [cLEC-75-N7]">
      <seq>acactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaagatacaaaaacgaaggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20184" stop="18175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19884" g_stop="19574" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18475" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="557" r_length="246" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E212265" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19884" e_stop="19574"/>
          <exon e_start="18720" e_stop="18475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTT</genome_strand>
        <mrna_strand>ACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAAGATACAAAAACGAAGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270446" ref_strand="+" ref_description="SGN-E270446 [cLEM-1-D17]">
      <seq>cacactctaccacacactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20197" stop="18185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19897" g_stop="19574" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18485" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="560" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E270446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19897" e_stop="19574"/>
          <exon e_start="18720" e_stop="18485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAA</genome_strand>
        <mrna_strand>CACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326292" ref_strand="+" ref_description="SGN-E326292 [cTOC-14-A24]">
      <seq>tctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgctagcaatatgggaggatacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20180" stop="18185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19880" g_stop="19574" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18485" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="543" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E326292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19880" e_stop="19574"/>
          <exon e_start="18720" e_stop="18485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAA</genome_strand>
        <mrna_strand>TCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316205" ref_strand="+" ref_description="SGN-E316205 [cTOA-23-A18]">
      <seq>tatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20167" stop="18207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19867" g_stop="19574" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18507" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="509" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E316205" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19867" e_stop="19574"/>
          <exon e_start="18720" e_stop="18507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACT-AAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTA</genome_strand>
        <mrna_strand>TATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283009" ref_strand="+" ref_description="SGN-E283009 [cLER-17-O24]">
      <seq>ttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaattcaactctgcctctctaaatcgccacctttcacgggcatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20162" stop="18208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19862" g_stop="19574" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18508" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="502" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E283009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19862" e_stop="19574"/>
          <exon e_start="18720" e_stop="18508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCT</genome_strand>
        <mrna_strand>TTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210000" ref_strand="+" ref_description="SGN-E210000 [cLEC-40-J17]">
      <seq>acacactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactntatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatatccaagatctatgttctcacacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20186" stop="18251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19886" g_stop="19574" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18551" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="483" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E210000" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19886" e_stop="19574"/>
          <exon e_start="18720" e_stop="18551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATT</genome_strand>
        <mrna_strand>ACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTNTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208898" ref_strand="+" ref_description="SGN-E208898 [cLEC-51-P23]">
      <seq>tgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatattcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20161" stop="18270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19861" g_stop="19574" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18570" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="439" r_length="151" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E208898" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19861" e_stop="19574"/>
          <exon e_start="18720" e_stop="18570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGA</genome_strand>
        <mrna_strand>TGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATTCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331962" ref_strand="+" ref_description="SGN-E331962 [cTOD-16-M16]">
      <seq>tatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaagaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaacagtaacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20167" stop="18276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19867" g_stop="19574" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18576" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="439" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E331962" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19867" e_stop="19574"/>
          <exon e_start="18720" e_stop="18576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATAT</genome_strand>
        <mrna_strand>TATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAGAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329575" ref_strand="+" ref_description="SGN-E329575 [cTOD-11-P13]">
      <seq>ctctctataggatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatatcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaacgctgtttctgattcgcagaattcacagacatgtctggacccacatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgacattcccggaagcaattgcttgaacagtaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20181" stop="18277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19881" g_stop="19574" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18577" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="452" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E329575" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19881" e_stop="19574"/>
          <exon e_start="18720" e_stop="18577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATA</genome_strand>
        <mrna_strand>CTCTCTATAGGATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATATCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAACGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCACATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGGAAGCAATTGCTTGAACAGTAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313366" ref_strand="+" ref_description="SGN-E313366 [cTOA-13-N17]">
      <seq>tatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaagagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaagctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaagagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaagagcaaaaccgcggttccacttggagcaaattatcgtctgattgacattcccgtaagcaattgcttgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20176" stop="18285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19876" g_stop="19574" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18585" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="437" r_length="134" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E313366" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19876" e_stop="19574"/>
          <exon e_start="18720" e_stop="18585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACA</genome_strand>
        <mrna_strand>TATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAAGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAAGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACT-AAAAAAGAGCAAAACC-GCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203619" ref_strand="+" ref_description="SGN-E203619 [cLEC-15-L19]">
      <seq>ctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattcttggaggtggagctgggacccgactttatcctctaactaaaaaaagagcaaaacctgcggttccacttggagcaaattatcgtctgattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20179" stop="18309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19879" g_stop="19574" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18609" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="418" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E203619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19879" e_stop="19574"/>
          <exon e_start="18720" e_stop="18609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACA</genome_strand>
        <mrna_strand>CTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272487" ref_strand="+" ref_description="SGN-E272487 [cLEM-19-J16]">
      <seq>caatcacactctaccacacactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctcgccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaatgtgagaagaagtccattgattgtgtctcctaaggctgtttctgattcgcagaattcacagacatgtctggacccagatgctagcaggagtgttttgggaattattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20201" stop="18400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19901" g_stop="19574" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18720" g_stop="18700" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="349" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E272487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19901" e_stop="19574"/>
          <exon e_start="18720" e_stop="18700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGGGTAAGTAAATTTCAGTCAATTTTATCATAAGATGCATTAGTATATAATCATTAGATAAAAATGTAGAACTTTTTTCTCTGATTAATTGAGGTGATTATTGGATTGTGACGGTTTGGAGAAGTAGATCCTCTTGTAAAAAAAATGGAGTGGGTTGCTTCAGAGTGAAGTATTTTGACTGGGTAGTTCTAGATCCGAGATCCTCTCACCTATTTTCCCTCTTTCTGATACAAAAATCACGTGCCTGTTTGAAAATGTGCTTGGATTACTTCATTTTGTTTAATATTTAACAAAATTCTTTGCCAACATTCTTCAAAGATTCATTATGCACGTGATAGGCATTATTGATGATATGACTTGGAAAAGCTGTTAAAACTAGTAATATGTTCTGGAAAATGTAGTCATTGGATCTGACTATCTGAGCATGAGCAAAACATCGCTGCACCAGCGTGTCGGATCCTTAAAAAATACACTACTTTTGGAGTACCAGACACGCACCCAAAGACAACTTCAAAGAGTCCAAATAACGTTTTCAGGCATAGCTAGTAGTGTGTGTCTCACCTTCTAATCCTTAGACTGAACACTTTTTATTTGTTAGTATTAGTAATAATGGGCAGATTGCCATTTCAATATGTCAACCTTTTTATATTTTCATAAAAAGTATATCAATCTAGTTATATTGTAGTATTAAGTTAATTGTATTCACAAAACCTTATTTGGTAATAGCTTGACAATGATTCACGTGTTCTTAGAAGTAAGTATTATGATAACTTGTTTTTTGATATGGAAACTTTAAGAAGCTGAATTTCTCTAAGTAAATACGGTGATCTGAACTTGAATTGTTTATGCAATGTAGAGTGTTTTGGGAATTATTCTT</genome_strand>
        <mrna_strand>CAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTGGGAATTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356081" ref_strand="+" ref_description="SGN-E356081 [cLHT-7-M17]">
      <seq>tgcagtcacactctaccacacactctctatagtatctatagttgagagcaagctttgttaacaatggcggcttccattggagccttaaaatcttcaccttcttcccacaattgcatcaatgagagaagaaatgattctacacgtgcaatatccagcagaaatctctcattttcgtcttctcatctagccggagacaagttgatgcctgtatcgtccttacgttcccaaggagtacgattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="20203" stop="19362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19903" g_stop="19662" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E356081" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19903" e_stop="19662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAA</genome_strand>
        <mrna_strand>TGCAGTCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTAGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732207" ref_strand="+" ref_description="SGN-E732207 [LB01CC04]">
      <seq>ctattcacctagctagttggctagaagatgcaaggcagcatgcaaatgcaaacatgaccataatgctgattggaaacaagtgtgatctggctcacagaagggctgtaagcaccgaggaaggcgaacaatttgccaaggaaaatgggttgatatttatggaggcctctgccaaaacagctcagaatgttgaagaggcttttatcagaacagcctcaacaatttataagaaaatacaggatggagtgtttgatgtatcaaatgagtcctatggaataaaagttggatatggaggtattccggggccttcaggtggaagagacggagctgcttcacaaggagggggttgttgtacttgaaaatggacatttattgttcgcaaacctattatgttcctatggttgtttatttgtagtttggtattgctctttagtttattccttttaatgaaaggataatatatgtgcaaaaataagtaaatttggtacataaaagacattctttttctttgtgcattttctgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23186" stop="20713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22887" g_stop="22694" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22693" i_stop="22575" i_length="119">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22574" g_stop="22506" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="263" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22505" i_stop="21273" i_length="1233">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21272" g_stop="21004" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="532" r_length="269" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E732207" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22887" e_stop="22694"/>
          <exon e_start="22574" e_stop="22506"/>
          <exon e_start="21272" e_stop="21004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAGGTGGGGGATTCTTCCATCCGCTACTTTCCTGACCTTTAATATCCATCCATGGACATCTTTCTCTAACTAAACTTATAAATTGGTTGTTTATCTGGTTTCTTGTTTCTGCTGCTTTTCAGGCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAGGTATGTCACGCCCTGACCATTTTTATATATCTATAGTCTTTTAGTGTGGCTAATTTCCGTGGACATCTGTTAATATGAAAATGGCGATCGTCTAGAAAGACATAATTGACATCTCATGAAGTAAAGAGTTATGAAGAAGGTTTTTTTTGCTTGTTCTAAACCTGTTTTAATTTTGTGTTCTTGATTGAAATTAAATAAAAAAGTTGGAGGATATTCTCTCCTTTGAAAACATATATGCGTTTGGATACTTTGGAATTTTATTCCCCAAAAGAATACTTGTTTGCATCTTGTAATAATTGCAGTTTTTTGAAGTTTTGAGTGTGTTTTATTAGTGGATAACTTTTCTTTTGAAATTGCTAAAACCGCTTCTTGCAATATGATTTTTAAAGGAAGTCTTTTGACCAATACTTCTTGAAAAAAACACAAACTTGAACACCTATTTTGAAAGTTTTCTGCAAGATAATTACTATAAATTATCTGCAAACAGATGTCACCTAAGGAGGTTCATCCTCTATGTAATCTGGTCACTTGACCAAAGATCAACATCCTGCATGAGAAAAAAGACCATCTGGAGAAACCATTGTTGGGTTCATGTCTTGTGTATTTGCAAATGTCTAGCTGTATTATTTGCAGATAAATGCTGTTATAGCTTCTGAGATGCCAGTTTCCGTGATGAATAGTCTTGCAAAATGTAACATCCAAATTGGGAGTAGATGTTTAAGCAGTTCCTAATTGTATCAGTCTTCTCATTTTCTGGGATCTTTAATTCATCTACTTTGACCTATAAAAATAATGTGTGAATTCAGTGTCCTTTTGAGAGCTAGATACCTAGAACTCACGGATATGGAACATGCTGTCTTAGTGTGGGAAGGCAACATTAATTTGGAGGAAGTTAAGAAGATATTATTCCAACCATCCAAAGAAATACCGATCCATCAATCTGCATTCTGCTGACTTGTGAGTTCATACCCCAATCTGGGACCAATAGTTGGGCATATTGTTAGCAGAGTTCCCTGTTTAATGTAGTATCATTTCAGTTGAGTAGTGATAGAATAGCATTGATGAATGTCCTAATCATTGTTTTGAGAACCAAGAAAACAGAAACTTACGTTGCAAGTATTTCAGTAAGTACTTGTAAATCTCAGTGATAATTGATTATCAACATGTATAATTATCATTTACGTAATAGTAGATGGTTTCCGAAACTAATGCTTGCCCTTTTTTCATTTGCAGTCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACATTTATTGTTCGCAAACCTATTATGTTCCTATGGTTGTTTATTTGTAGTTTGGTATTGCTCTTTAGTTTATTCCTTTTAATGAAAGGATAATATATGTGCAAAAATAAGTAAATTTGGTACATAAAAGACATTCTTTTTCTTTGTGCATTTTCTGTTTATTGAGTTGT</genome_strand>
        <mrna_strand>CTATTCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAG.......................................................................................................................GCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACATTTATTGTTCGCAAACCTATTATGTTCCTATGGTTGTTTATTTGTAGTTTGGTATTGCTCTTTAGTTTATTCCTTTTAATGAAAGGATAATATATGTGCAAAAATAAGTAAATTTGGTACATAAAAGACATTCTTTTTCTTTGTGCATTTTCTGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398747" ref_strand="+" ref_description="SGN-E398747 [TUS-46-A3](-)">
      <seq>gccaaggaaaatgggttgatatttaaaaaggcctctgccaaaacagctcagaatgttgaagaggcttttatcagaacagcctcaacaatttataagaaaatacaggatggagtgtttgatgtatcaaatgagtcctatggaataaaagttggatatggaggtattccggggccttcaggtggaagagacggagctgcttcacaaggagggggttgttgtacttgaaaatggacatttattgttcgcaaacctattatgttcctatggttgtttatttgtagtttggtattgctctttagtttattccttttaatgaaaggataatatatgtgcaaaaataagtaaatttggtacataaaagacattcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23056" stop="20734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22756" g_stop="22694" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22693" i_stop="22575" i_length="119">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22574" g_stop="22506" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="132" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22505" i_stop="21273" i_length="1233">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21272" g_stop="21024" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="381" r_length="249" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E398747" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22756" e_stop="22694"/>
          <exon e_start="22574" e_stop="22506"/>
          <exon e_start="21272" e_stop="21024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAGGTGGGGGATTCTTCCATCCGCTACTTTCCTGACCTTTAATATCCATCCATGGACATCTTTCTCTAACTAAACTTATAAATTGGTTGTTTATCTGGTTTCTTGTTTCTGCTGCTTTTCAGGCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAGGTATGTCACGCCCTGACCATTTTTATATATCTATAGTCTTTTAGTGTGGCTAATTTCCGTGGACATCTGTTAATATGAAAATGGCGATCGTCTAGAAAGACATAATTGACATCTCATGAAGTAAAGAGTTATGAAGAAGGTTTTTTTTGCTTGTTCTAAACCTGTTTTAATTTTGTGTTCTTGATTGAAATTAAATAAAAAAGTTGGAGGATATTCTCTCCTTTGAAAACATATATGCGTTTGGATACTTTGGAATTTTATTCCCCAAAAGAATACTTGTTTGCATCTTGTAATAATTGCAGTTTTTTGAAGTTTTGAGTGTGTTTTATTAGTGGATAACTTTTCTTTTGAAATTGCTAAAACCGCTTCTTGCAATATGATTTTTAAAGGAAGTCTTTTGACCAATACTTCTTGAAAAAAACACAAACTTGAACACCTATTTTGAAAGTTTTCTGCAAGATAATTACTATAAATTATCTGCAAACAGATGTCACCTAAGGAGGTTCATCCTCTATGTAATCTGGTCACTTGACCAAAGATCAACATCCTGCATGAGAAAAAAGACCATCTGGAGAAACCATTGTTGGGTTCATGTCTTGTGTATTTGCAAATGTCTAGCTGTATTATTTGCAGATAAATGCTGTTATAGCTTCTGAGATGCCAGTTTCCGTGATGAATAGTCTTGCAAAATGTAACATCCAAATTGGGAGTAGATGTTTAAGCAGTTCCTAATTGTATCAGTCTTCTCATTTTCTGGGATCTTTAATTCATCTACTTTGACCTATAAAAATAATGTGTGAATTCAGTGTCCTTTTGAGAGCTAGATACCTAGAACTCACGGATATGGAACATGCTGTCTTAGTGTGGGAAGGCAACATTAATTTGGAGGAAGTTAAGAAGATATTATTCCAACCATCCAAAGAAATACCGATCCATCAATCTGCATTCTGCTGACTTGTGAGTTCATACCCCAATCTGGGACCAATAGTTGGGCATATTGTTAGCAGAGTTCCCTGTTTAATGTAGTATCATTTCAGTTGAGTAGTGATAGAATAGCATTGATGAATGTCCTAATCATTGTTTTGAGAACCAAGAAAACAGAAACTTACGTTGCAAGTATTTCAGTAAGTACTTGTAAATCTCAGTGATAATTGATTATCAACATGTATAATTATCATTTACGTAATAGTAGATGGTTTCCGAAACTAATGCTTGCCCTTTTTTCATTTGCAGTCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACATTTATTGTTCGCAAACCTATTATGTTCCTATGGTTGTTTATTTGTAGTTTGGTATTGCTCTTTAGTTTATTCCTTTTAATGAAAGGATAATATATGTGCAAAAATAAGTAAATTTGGTACATAAAAGACATTCTTTTTCTTTGTGCA</genome_strand>
        <mrna_strand>GCCAAGGAAAATGGGTTGATATTTAAAAAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAG.......................................................................................................................GCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACATTTATTGTTCGCAAACCTATTATGTTCCTATGGTTGTTTATTTGTAGTTTGGTATTGCTCTTTAGTTTATTCCTTTTAATGAAAGGATAATATATGTGCAAAAATAAGTAAATTTGGTACATAAAAGACATTCTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746925" ref_strand="+" ref_description="SGN-E746925 [GI|47104357]">
      <seq>gattacccgacccgtttaacagctttgctggagtcgtgccttctcttcgaaggaaaatccttcgacacgccaaaattggcaaagtagttcaataatttacgtatattcaaacgcctttgcgcctctgtaaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaatttggggctagaatgatcacaatagacaacaagcccattaaactacaaatctgggatacagcgggtcaagaatcattcagatctatcacgaggtcatactacagaggtgctgctggggcactacttgtttatgatattacaaggagggaaacatttaatcacctagctagttggctagaagatgcaaggcagcatgcaaatgcaaacatgaccataatgctgattggaaacaagtgtgatctggctcacagaagggctgtaagcaccgaggaaggcgaacaatttgccaaggaaaatgggttgatatttatggaggcctctgccaaaacagctcagaatgttgaagaggcttttatcagaacagcctcaacaatttataagaaaatacaggatggagtgtttgatgtatcaaatgagtcctatggaataaaagttggatatggaggtattccggggccttcaggtggaagagacggagctgcttcacaaggagggggttgttgtacttgaaaatggacatttattgttcgcaaacctattatgttcctatggttgtttatttgtagtttggtattgctctttagtttattccttttaatgaaaggataatatatgtgcaaaaataagtaaatttggtacataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25575" stop="20741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25275" g_stop="24907" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="509" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23446" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="592" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23445" i_stop="22899" i_length="547">
            <donor d_prob="0.510" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22898" g_stop="22694" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="797" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22693" i_stop="22575" i_length="119">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22574" g_stop="22506" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="866" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22505" i_stop="21273" i_length="1233">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21272" g_stop="21034" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="1105" r_length="239" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E746925" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1105</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25275" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23446"/>
          <exon e_start="22898" e_stop="22694"/>
          <exon e_start="22574" e_stop="22506"/>
          <exon e_start="21272" e_stop="21034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACCCGACCCGTTTAACAGCTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAGGTATTCTCTGCAGTGTCTTTGGCCTTCCCATACCTGTAGGGAACTTGAGGTTACATGTCTGATAATATAAATGAATATATTTCTTGATCTTCCTTTTATCGTTGATCAATGTTCCAGAAATATTCTTCTACAAATTCTTGTTACCCCAGGATGCATTCTAAGTGCTAAGTTCCCAGCATTATGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATTCAGTTTTTTGTTAATTTTCTTACAGAACATTTTCGATGTTTACCTAATGATCGATGAACATTCCCTTCTAATCTTTCACTTTATAACTTTTAGCCTATCTAATGATGTTCCAGTCAAATGCCTAACATGTCTTTGGCTATGAGAGCATCAGAACAAGTCTGTAAAGCTAACTATAAGCACTCGGTTATTTTGTTCTTATTCTTTTTTTCTTCAAATGAAGGAAATTTAATATTAAACTAAGGTGTATATATGAAGATATTATGGAAGTTTGGTCTATTTGATGTATTGGTGATTTTGTTTTCCCCATGCCAAAACATTTTAGGAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAGGTGGGGGATTCTTCCATCCGCTACTTTCCTGACCTTTAATATCCATCCATGGACATCTTTCTCTAACTAAACTTATAAATTGGTTGTTTATCTGGTTTCTTGTTTCTGCTGCTTTTCAGGCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAGGTATGTCACGCCCTGACCATTTTTATATATCTATAGTCTTTTAGTGTGGCTAATTTCCGTGGACATCTGTTAATATGAAAATGGCGATCGTCTAGAAAGACATAATTGACATCTCATGAAGTAAAGAGTTATGAAGAAGGTTTTTTTTGCTTGTTCTAAACCTGTTTTAATTTTGTGTTCTTGATTGAAATTAAATAAAAAAGTTGGAGGATATTCTCTCCTTTGAAAACATATATGCGTTTGGATACTTTGGAATTTTATTCCCCAAAAGAATACTTGTTTGCATCTTGTAATAATTGCAGTTTTTTGAAGTTTTGAGTGTGTTTTATTAGTGGATAACTTTTCTTTTGAAATTGCTAAAACCGCTTCTTGCAATATGATTTTTAAAGGAAGTCTTTTGACCAATACTTCTTGAAAAAAACACAAACTTGAACACCTATTTTGAAAGTTTTCTGCAAGATAATTACTATAAATTATCTGCAAACAGATGTCACCTAAGGAGGTTCATCCTCTATGTAATCTGGTCACTTGACCAAAGATCAACATCCTGCATGAGAAAAAAGACCATCTGGAGAAACCATTGTTGGGTTCATGTCTTGTGTATTTGCAAATGTCTAGCTGTATTATTTGCAGATAAATGCTGTTATAGCTTCTGAGATGCCAGTTTCCGTGATGAATAGTCTTGCAAAATGTAACATCCAAATTGGGAGTAGATGTTTAAGCAGTTCCTAATTGTATCAGTCTTCTCATTTTCTGGGATCTTTAATTCATCTACTTTGACCTATAAAAATAATGTGTGAATTCAGTGTCCTTTTGAGAGCTAGATACCTAGAACTCACGGATATGGAACATGCTGTCTTAGTGTGGGAAGGCAACATTAATTTGGAGGAAGTTAAGAAGATATTATTCCAACCATCCAAAGAAATACCGATCCATCAATCTGCATTCTGCTGACTTGTGAGTTCATACCCCAATCTGGGACCAATAGTTGGGCATATTGTTAGCAGAGTTCCCTGTTTAATGTAGTATCATTTCAGTTGAGTAGTGATAGAATAGCATTGATGAATGTCCTAATCATTGTTTTGAGAACCAAGAAAACAGAAACTTACGTTGCAAGTATTTCAGTAAGTACTTGTAAATCTCAGTGATAATTGATTATCAACATGTATAATTATCATTTACGTAATAGTAGATGGTTTCCGAAACTAATGCTTGCCCTTTTTTCATTTGCAGTCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACATTTATTGTTCGCAAACCTATTATGTTCCTATGGTTGTTTATTTGTAGTTTGGTATTGCTCTTTAGTTTATTCCTTTTAATGAAAGGATAATATATGTGCAAAAATAAGTAAATTTGGTACATAAAAGACATTCTTTT</genome_strand>
        <mrna_strand>GATTACCCGACCCGTTTAACAGCTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA......................................................................................................................................................................................................................................................GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAG.......................................................................................................................GCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACATTTATTGTTCGCAAACCTATTATGTTCCTATGGTTGTTTATTTGTAGTTTGGTATTGCTCTTTAGTTTATTCCTTTTAATGAAAGGATAATATATGTGCAAAAATAAGTAAATTTGGTACATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709424" ref_strand="+" ref_description="SGN-E709424 [FA51DH12]">
      <seq>tatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaatttggggctagaatgatcacaatagacaacaagcccattaaactacaaatctgggatacagcgggtcaagaatcattcagatctatcacgaggtcatactacagaggtgctgctggggcactacttgtttatgatattacaaggagggaaacatttaatcacctagctagttggctagaagatgcaaggcagcatgcaaatgcaaacatgaccataatgctgattggaaacaagtgtgatctggctcacagaagggctgtaagcaccgaggaaggcgaacaatttgccaaggaaaatgggttgatatttatggaggcctctgccaaaacagctcagaatgttgaagaggcttttatcagaacagcctcaacaatttataagaaaatacaggatggagtgtttgatgtatcanatgagtcctatggaataaaagttggatatggaggtattccggggccttcaggtggaagagacggagctgcttcacaaggagggggttgttgtacttgaaaatggacatttattgttcgcaaaacctattatgttcctatgggtgtttatttgtagtttgggattgctctttagtttattcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25376" stop="20796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25077" g_stop="24907" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="311" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23446" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="394" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23445" i_stop="22899" i_length="547">
            <donor d_prob="0.510" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22898" g_stop="22694" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="599" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22693" i_stop="22575" i_length="119">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22574" g_stop="22506" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="668" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22505" i_stop="21273" i_length="1233">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21272" g_stop="21096" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="846" r_length="178" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E709424" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25077" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23446"/>
          <exon e_start="22898" e_stop="22694"/>
          <exon e_start="22574" e_stop="22506"/>
          <exon e_start="21272" e_stop="21096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAGGTATTCTCTGCAGTGTCTTTGGCCTTCCCATACCTGTAGGGAACTTGAGGTTACATGTCTGATAATATAAATGAATATATTTCTTGATCTTCCTTTTATCGTTGATCAATGTTCCAGAAATATTCTTCTACAAATTCTTGTTACCCCAGGATGCATTCTAAGTGCTAAGTTCCCAGCATTATGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATTCAGTTTTTTGTTAATTTTCTTACAGAACATTTTCGATGTTTACCTAATGATCGATGAACATTCCCTTCTAATCTTTCACTTTATAACTTTTAGCCTATCTAATGATGTTCCAGTCAAATGCCTAACATGTCTTTGGCTATGAGAGCATCAGAACAAGTCTGTAAAGCTAACTATAAGCACTCGGTTATTTTGTTCTTATTCTTTTTTTCTTCAAATGAAGGAAATTTAATATTAAACTAAGGTGTATATATGAAGATATTATGGAAGTTTGGTCTATTTGATGTATTGGTGATTTTGTTTTCCCCATGCCAAAACATTTTAGGAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAGGTGGGGGATTCTTCCATCCGCTACTTTCCTGACCTTTAATATCCATCCATGGACATCTTTCTCTAACTAAACTTATAAATTGGTTGTTTATCTGGTTTCTTGTTTCTGCTGCTTTTCAGGCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAGGTATGTCACGCCCTGACCATTTTTATATATCTATAGTCTTTTAGTGTGGCTAATTTCCGTGGACATCTGTTAATATGAAAATGGCGATCGTCTAGAAAGACATAATTGACATCTCATGAAGTAAAGAGTTATGAAGAAGGTTTTTTTTGCTTGTTCTAAACCTGTTTTAATTTTGTGTTCTTGATTGAAATTAAATAAAAAAGTTGGAGGATATTCTCTCCTTTGAAAACATATATGCGTTTGGATACTTTGGAATTTTATTCCCCAAAAGAATACTTGTTTGCATCTTGTAATAATTGCAGTTTTTTGAAGTTTTGAGTGTGTTTTATTAGTGGATAACTTTTCTTTTGAAATTGCTAAAACCGCTTCTTGCAATATGATTTTTAAAGGAAGTCTTTTGACCAATACTTCTTGAAAAAAACACAAACTTGAACACCTATTTTGAAAGTTTTCTGCAAGATAATTACTATAAATTATCTGCAAACAGATGTCACCTAAGGAGGTTCATCCTCTATGTAATCTGGTCACTTGACCAAAGATCAACATCCTGCATGAGAAAAAAGACCATCTGGAGAAACCATTGTTGGGTTCATGTCTTGTGTATTTGCAAATGTCTAGCTGTATTATTTGCAGATAAATGCTGTTATAGCTTCTGAGATGCCAGTTTCCGTGATGAATAGTCTTGCAAAATGTAACATCCAAATTGGGAGTAGATGTTTAAGCAGTTCCTAATTGTATCAGTCTTCTCATTTTCTGGGATCTTTAATTCATCTACTTTGACCTATAAAAATAATGTGTGAATTCAGTGTCCTTTTGAGAGCTAGATACCTAGAACTCACGGATATGGAACATGCTGTCTTAGTGTGGGAAGGCAACATTAATTTGGAGGAAGTTAAGAAGATATTATTCCAACCATCCAAAGAAATACCGATCCATCAATCTGCATTCTGCTGACTTGTGAGTTCATACCCCAATCTGGGACCAATAGTTGGGCATATTGTTAGCAGAGTTCCCTGTTTAATGTAGTATCATTTCAGTTGAGTAGTGATAGAATAGCATTGATGAATGTCCTAATCATTGTTTTGAGAACCAAGAAAACAGAAACTTACGTTGCAAGTATTTCAGTAAGTACTTGTAAATCTCAGTGATAATTGATTATCAACATGTATAATTATCATTTACGTAATAGTAGATGGTTTCCGAAACTAATGCTTGCCCTTTTTTCATTTGCAGTCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACATTTATTGTTCGC-AAACCTATTATGTTCCTATGGTTGTTTATTTGTAGTTTGGTATTGCTCTTTAGTTTATTCCTT</genome_strand>
        <mrna_strand>TATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA......................................................................................................................................................................................................................................................GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAG.......................................................................................................................GCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCANATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACATTTATTGTTCGCAAAACCTATTATGTTCCTATGGGTGTTTATTTGTAGTTTGGGATTGCTCTTTAGTTTATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703623" ref_strand="+" ref_description="SGN-E703623 [FA22AA12]">
      <seq>cgcctctgtaaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaatttggggctagaatgatcacaatagacaacaagcccattaaactacaaatctgggatacagcgggtcaagaatcattcagatctatcacgaggtcatactacagaggtgctgctggggcactacttgtttatgatattacaaggagggaaacatttaatcacctagctagttggctagaagatgcaaggcagcatgcaaatgcaaacatgaccataatgctgattggaaacaagtgtgatctggctcacagaagggctgtaagcaccgaggaaggcgaacaatttgccaaggaaaatgggttgatatttatggaggcctctgccaaaacagctcagaatgttgaagaggcttttatcagaacagcctcaacaatttataagaaaatacaggatggagtgtttgatgtatcaaatgagtcctatggaataaaagttggatatggaggtattccggggccttcaggtggaagagacggagctgcttcacaaggagggggttgttgtacttgaaaatggacatttattgttcgcaaacctattatgttcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25456" stop="20840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25156" g_stop="24907" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="390" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23446" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="473" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23445" i_stop="22899" i_length="547">
            <donor d_prob="0.510" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22898" g_stop="22694" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="678" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22693" i_stop="22575" i_length="119">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22574" g_stop="22506" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="747" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22505" i_stop="21273" i_length="1233">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21272" g_stop="21140" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="880" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E703623" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25156" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23446"/>
          <exon e_start="22898" e_stop="22694"/>
          <exon e_start="22574" e_stop="22506"/>
          <exon e_start="21272" e_stop="21140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAGGTATTCTCTGCAGTGTCTTTGGCCTTCCCATACCTGTAGGGAACTTGAGGTTACATGTCTGATAATATAAATGAATATATTTCTTGATCTTCCTTTTATCGTTGATCAATGTTCCAGAAATATTCTTCTACAAATTCTTGTTACCCCAGGATGCATTCTAAGTGCTAAGTTCCCAGCATTATGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATTCAGTTTTTTGTTAATTTTCTTACAGAACATTTTCGATGTTTACCTAATGATCGATGAACATTCCCTTCTAATCTTTCACTTTATAACTTTTAGCCTATCTAATGATGTTCCAGTCAAATGCCTAACATGTCTTTGGCTATGAGAGCATCAGAACAAGTCTGTAAAGCTAACTATAAGCACTCGGTTATTTTGTTCTTATTCTTTTTTTCTTCAAATGAAGGAAATTTAATATTAAACTAAGGTGTATATATGAAGATATTATGGAAGTTTGGTCTATTTGATGTATTGGTGATTTTGTTTTCCCCATGCCAAAACATTTTAGGAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAGGTGGGGGATTCTTCCATCCGCTACTTTCCTGACCTTTAATATCCATCCATGGACATCTTTCTCTAACTAAACTTATAAATTGGTTGTTTATCTGGTTTCTTGTTTCTGCTGCTTTTCAGGCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAGGTATGTCACGCCCTGACCATTTTTATATATCTATAGTCTTTTAGTGTGGCTAATTTCCGTGGACATCTGTTAATATGAAAATGGCGATCGTCTAGAAAGACATAATTGACATCTCATGAAGTAAAGAGTTATGAAGAAGGTTTTTTTTGCTTGTTCTAAACCTGTTTTAATTTTGTGTTCTTGATTGAAATTAAATAAAAAAGTTGGAGGATATTCTCTCCTTTGAAAACATATATGCGTTTGGATACTTTGGAATTTTATTCCCCAAAAGAATACTTGTTTGCATCTTGTAATAATTGCAGTTTTTTGAAGTTTTGAGTGTGTTTTATTAGTGGATAACTTTTCTTTTGAAATTGCTAAAACCGCTTCTTGCAATATGATTTTTAAAGGAAGTCTTTTGACCAATACTTCTTGAAAAAAACACAAACTTGAACACCTATTTTGAAAGTTTTCTGCAAGATAATTACTATAAATTATCTGCAAACAGATGTCACCTAAGGAGGTTCATCCTCTATGTAATCTGGTCACTTGACCAAAGATCAACATCCTGCATGAGAAAAAAGACCATCTGGAGAAACCATTGTTGGGTTCATGTCTTGTGTATTTGCAAATGTCTAGCTGTATTATTTGCAGATAAATGCTGTTATAGCTTCTGAGATGCCAGTTTCCGTGATGAATAGTCTTGCAAAATGTAACATCCAAATTGGGAGTAGATGTTTAAGCAGTTCCTAATTGTATCAGTCTTCTCATTTTCTGGGATCTTTAATTCATCTACTTTGACCTATAAAAATAATGTGTGAATTCAGTGTCCTTTTGAGAGCTAGATACCTAGAACTCACGGATATGGAACATGCTGTCTTAGTGTGGGAAGGCAACATTAATTTGGAGGAAGTTAAGAAGATATTATTCCAACCATCCAAAGAAATACCGATCCATCAATCTGCATTCTGCTGACTTGTGAGTTCATACCCCAATCTGGGACCAATAGTTGGGCATATTGTTAGCAGAGTTCCCTGTTTAATGTAGTATCATTTCAGTTGAGTAGTGATAGAATAGCATTGATGAATGTCCTAATCATTGTTTTGAGAACCAAGAAAACAGAAACTTACGTTGCAAGTATTTCAGTAAGTACTTGTAAATCTCAGTGATAATTGATTATCAACATGTATAATTATCATTTACGTAATAGTAGATGGTTTCCGAAACTAATGCTTGCCCTTTTTTCATTTGCAGTCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACATTTATTGTTCGCAAACCTATTATGTTCCTAT</genome_strand>
        <mrna_strand>CGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA......................................................................................................................................................................................................................................................GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAG.......................................................................................................................GCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACATTTATTGTTCGCAAACCTATTATGTTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354510" ref_strand="+" ref_description="SGN-E354510 [cTOS-17-E13]">
      <seq>gcgaacaatttgccaaggaaaatgggttgatatttatggaggcctctgccaaaacagctcagaatgttgaagaggcttttatcagaacagcctcaacaatttataagaaaatacaggatggagtgtttgatgtatcaaatgagtcctatggaataaaagttggatatggaggtattccggggccttcaggtggaagagacggagctgcttcacaaggagggggttgttgtacttgaaaatggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23067" stop="20871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22767" g_stop="22694" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22693" i_stop="22575" i_length="119">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22574" g_stop="22506" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="143" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22505" i_stop="21273" i_length="1233">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21272" g_stop="21171" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="245" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E354510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22767" e_stop="22694"/>
          <exon e_start="22574" e_stop="22506"/>
          <exon e_start="21272" e_stop="21171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAGGTGGGGGATTCTTCCATCCGCTACTTTCCTGACCTTTAATATCCATCCATGGACATCTTTCTCTAACTAAACTTATAAATTGGTTGTTTATCTGGTTTCTTGTTTCTGCTGCTTTTCAGGCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAGGTATGTCACGCCCTGACCATTTTTATATATCTATAGTCTTTTAGTGTGGCTAATTTCCGTGGACATCTGTTAATATGAAAATGGCGATCGTCTAGAAAGACATAATTGACATCTCATGAAGTAAAGAGTTATGAAGAAGGTTTTTTTTGCTTGTTCTAAACCTGTTTTAATTTTGTGTTCTTGATTGAAATTAAATAAAAAAGTTGGAGGATATTCTCTCCTTTGAAAACATATATGCGTTTGGATACTTTGGAATTTTATTCCCCAAAAGAATACTTGTTTGCATCTTGTAATAATTGCAGTTTTTTGAAGTTTTGAGTGTGTTTTATTAGTGGATAACTTTTCTTTTGAAATTGCTAAAACCGCTTCTTGCAATATGATTTTTAAAGGAAGTCTTTTGACCAATACTTCTTGAAAAAAACACAAACTTGAACACCTATTTTGAAAGTTTTCTGCAAGATAATTACTATAAATTATCTGCAAACAGATGTCACCTAAGGAGGTTCATCCTCTATGTAATCTGGTCACTTGACCAAAGATCAACATCCTGCATGAGAAAAAAGACCATCTGGAGAAACCATTGTTGGGTTCATGTCTTGTGTATTTGCAAATGTCTAGCTGTATTATTTGCAGATAAATGCTGTTATAGCTTCTGAGATGCCAGTTTCCGTGATGAATAGTCTTGCAAAATGTAACATCCAAATTGGGAGTAGATGTTTAAGCAGTTCCTAATTGTATCAGTCTTCTCATTTTCTGGGATCTTTAATTCATCTACTTTGACCTATAAAAATAATGTGTGAATTCAGTGTCCTTTTGAGAGCTAGATACCTAGAACTCACGGATATGGAACATGCTGTCTTAGTGTGGGAAGGCAACATTAATTTGGAGGAAGTTAAGAAGATATTATTCCAACCATCCAAAGAAATACCGATCCATCAATCTGCATTCTGCTGACTTGTGAGTTCATACCCCAATCTGGGACCAATAGTTGGGCATATTGTTAGCAGAGTTCCCTGTTTAATGTAGTATCATTTCAGTTGAGTAGTGATAGAATAGCATTGATGAATGTCCTAATCATTGTTTTGAGAACCAAGAAAACAGAAACTTACGTTGCAAGTATTTCAGTAAGTACTTGTAAATCTCAGTGATAATTGATTATCAACATGTATAATTATCATTTACGTAATAGTAGATGGTTTCCGAAACTAATGCTTGCCCTTTTTTCATTTGCAGTCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACA</genome_strand>
        <mrna_strand>GCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAG.......................................................................................................................GCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697941" ref_strand="+" ref_description="SGN-E697941 [FA04DB01]">
      <seq>cattaatttacgtatattcaaacgcctttgcgcctctgtaaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaatttggggctagaatgatcacaatagacaacaagcccattaaactacaaatctgggatacagcgggtcaagaatcattcagatctatcacgaggtcatactacagaggtgctgctggggcactacttgtttatgatattacaaggagggaaacatttaatcacctagctagttggctagaagatgcaaggcagcatgcaaatgcaaacatgaccataatgctgattggaaacaagtgtgatctggctcacagaagggctgtaagcaccgaggaaggcgaacaatttgccaaggaaaatgggttgatatttatggaggcctctgccaaaacagctcagaatgttgaagaggcttttatcagaacagcctcaacaatttataagaaaatacaggatggagtgtttgatgtatcaaatgagtcctatggaataacagttggatatggaggtattccggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25486" stop="20935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25186" g_stop="24907" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="420" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23446" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="503" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23445" i_stop="22899" i_length="547">
            <donor d_prob="0.510" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22898" g_stop="22694" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="708" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22693" i_stop="22575" i_length="119">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22574" g_stop="22506" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="777" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22505" i_stop="21273" i_length="1233">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21272" g_stop="21235" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="815" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E697941" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25186" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23446"/>
          <exon e_start="22898" e_stop="22694"/>
          <exon e_start="22574" e_stop="22506"/>
          <exon e_start="21272" e_stop="21235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAGGTATTCTCTGCAGTGTCTTTGGCCTTCCCATACCTGTAGGGAACTTGAGGTTACATGTCTGATAATATAAATGAATATATTTCTTGATCTTCCTTTTATCGTTGATCAATGTTCCAGAAATATTCTTCTACAAATTCTTGTTACCCCAGGATGCATTCTAAGTGCTAAGTTCCCAGCATTATGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATTCAGTTTTTTGTTAATTTTCTTACAGAACATTTTCGATGTTTACCTAATGATCGATGAACATTCCCTTCTAATCTTTCACTTTATAACTTTTAGCCTATCTAATGATGTTCCAGTCAAATGCCTAACATGTCTTTGGCTATGAGAGCATCAGAACAAGTCTGTAAAGCTAACTATAAGCACTCGGTTATTTTGTTCTTATTCTTTTTTTCTTCAAATGAAGGAAATTTAATATTAAACTAAGGTGTATATATGAAGATATTATGGAAGTTTGGTCTATTTGATGTATTGGTGATTTTGTTTTCCCCATGCCAAAACATTTTAGGAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAGGTGGGGGATTCTTCCATCCGCTACTTTCCTGACCTTTAATATCCATCCATGGACATCTTTCTCTAACTAAACTTATAAATTGGTTGTTTATCTGGTTTCTTGTTTCTGCTGCTTTTCAGGCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAGGTATGTCACGCCCTGACCATTTTTATATATCTATAGTCTTTTAGTGTGGCTAATTTCCGTGGACATCTGTTAATATGAAAATGGCGATCGTCTAGAAAGACATAATTGACATCTCATGAAGTAAAGAGTTATGAAGAAGGTTTTTTTTGCTTGTTCTAAACCTGTTTTAATTTTGTGTTCTTGATTGAAATTAAATAAAAAAGTTGGAGGATATTCTCTCCTTTGAAAACATATATGCGTTTGGATACTTTGGAATTTTATTCCCCAAAAGAATACTTGTTTGCATCTTGTAATAATTGCAGTTTTTTGAAGTTTTGAGTGTGTTTTATTAGTGGATAACTTTTCTTTTGAAATTGCTAAAACCGCTTCTTGCAATATGATTTTTAAAGGAAGTCTTTTGACCAATACTTCTTGAAAAAAACACAAACTTGAACACCTATTTTGAAAGTTTTCTGCAAGATAATTACTATAAATTATCTGCAAACAGATGTCACCTAAGGAGGTTCATCCTCTATGTAATCTGGTCACTTGACCAAAGATCAACATCCTGCATGAGAAAAAAGACCATCTGGAGAAACCATTGTTGGGTTCATGTCTTGTGTATTTGCAAATGTCTAGCTGTATTATTTGCAGATAAATGCTGTTATAGCTTCTGAGATGCCAGTTTCCGTGATGAATAGTCTTGCAAAATGTAACATCCAAATTGGGAGTAGATGTTTAAGCAGTTCCTAATTGTATCAGTCTTCTCATTTTCTGGGATCTTTAATTCATCTACTTTGACCTATAAAAATAATGTGTGAATTCAGTGTCCTTTTGAGAGCTAGATACCTAGAACTCACGGATATGGAACATGCTGTCTTAGTGTGGGAAGGCAACATTAATTTGGAGGAAGTTAAGAAGATATTATTCCAACCATCCAAAGAAATACCGATCCATCAATCTGCATTCTGCTGACTTGTGAGTTCATACCCCAATCTGGGACCAATAGTTGGGCATATTGTTAGCAGAGTTCCCTGTTTAATGTAGTATCATTTCAGTTGAGTAGTGATAGAATAGCATTGATGAATGTCCTAATCATTGTTTTGAGAACCAAGAAAACAGAAACTTACGTTGCAAGTATTTCAGTAAGTACTTGTAAATCTCAGTGATAATTGATTATCAACATGTATAATTATCATTTACGTAATAGTAGATGGTTTCCGAAACTAATGCTTGCCCTTTTTTCATTTGCAGTCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGG</genome_strand>
        <mrna_strand>CATTAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA......................................................................................................................................................................................................................................................GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAG.......................................................................................................................GCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATGGAATAACAGTTGGATATGGAGGTATTCCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359058" ref_strand="+" ref_description="SGN-E359058 [cLHT-11-B15]">
      <seq>tatattcagatctccgttgatccaccgccgtatcggtaaatcatgtcgtacgcatatctcttcaagtatattatcatcggcgatactggagttggaaagtcatgtctacttttgcaatttacggacaaacggtttcaaccagtccatgacctgaccataggggttgaatttggggctcgaatgatcacaatcgacaacaaaccaattaagctacagatctgggacacggctggtcaagaatcattcagatccattacaaggtcatattacagaggggctgcgggcgcattacttgtttatgatattacaaggagggaaacatttaatcaccttgctagttggttggaagatgcaagacagcatgcaaatgcaaacatgaccataatgctgattgggaacaagtgtgatctggctcatagaagggctgtaagcacagaagaaggtgagcagtttgccaaagaaaacggattgatatttatggaggcctcagctaaaacagctcagaatgtggaagaggctttcatcaaaacagcctcaacaatctataagaaaatacaggatggagtgtttgatgtatcgaatgagtcctatggaataaaagttggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25256" stop="20949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24952" g_stop="24907" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="88" r_length="46" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="0.91"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="228" r_length="140" r_score="0.871"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="0.86"/>
            <acceptor a_prob="0.933" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23446" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="311" r_length="83" r_score="0.892"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23445" i_stop="22899" i_length="547">
            <donor d_prob="0.510" d_score="0.90"/>
            <acceptor a_prob="0.931" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22898" g_stop="22694" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="516" r_length="205" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22693" i_stop="22575" i_length="119">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22574" g_stop="22506" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="585" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22505" i_stop="21273" i_length="1233">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21272" g_stop="21249" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="609" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E359058" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24952" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23446"/>
          <exon e_start="22898" e_stop="22694"/>
          <exon e_start="22574" e_stop="22506"/>
          <exon e_start="21272" e_stop="21249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAGGTATTCTCTGCAGTGTCTTTGGCCTTCCCATACCTGTAGGGAACTTGAGGTTACATGTCTGATAATATAAATGAATATATTTCTTGATCTTCCTTTTATCGTTGATCAATGTTCCAGAAATATTCTTCTACAAATTCTTGTTACCCCAGGATGCATTCTAAGTGCTAAGTTCCCAGCATTATGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATTCAGTTTTTTGTTAATTTTCTTACAGAACATTTTCGATGTTTACCTAATGATCGATGAACATTCCCTTCTAATCTTTCACTTTATAACTTTTAGCCTATCTAATGATGTTCCAGTCAAATGCCTAACATGTCTTTGGCTATGAGAGCATCAGAACAAGTCTGTAAAGCTAACTATAAGCACTCGGTTATTTTGTTCTTATTCTTTTTTTCTTCAAATGAAGGAAATTTAATATTAAACTAAGGTGTATATATGAAGATATTATGGAAGTTTGGTCTATTTGATGTATTGGTGATTTTGTTTTCCCCATGCCAAAACATTTTAGGAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAGGTGGGGGATTCTTCCATCCGCTACTTTCCTGACCTTTAATATCCATCCATGGACATCTTTCTCTAACTAAACTTATAAATTGGTTGTTTATCTGGTTTCTTGTTTCTGCTGCTTTTCAGGCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAGGTATGTCACGCCCTGACCATTTTTATATATCTATAGTCTTTTAGTGTGGCTAATTTCCGTGGACATCTGTTAATATGAAAATGGCGATCGTCTAGAAAGACATAATTGACATCTCATGAAGTAAAGAGTTATGAAGAAGGTTTTTTTTGCTTGTTCTAAACCTGTTTTAATTTTGTGTTCTTGATTGAAATTAAATAAAAAAGTTGGAGGATATTCTCTCCTTTGAAAACATATATGCGTTTGGATACTTTGGAATTTTATTCCCCAAAAGAATACTTGTTTGCATCTTGTAATAATTGCAGTTTTTTGAAGTTTTGAGTGTGTTTTATTAGTGGATAACTTTTCTTTTGAAATTGCTAAAACCGCTTCTTGCAATATGATTTTTAAAGGAAGTCTTTTGACCAATACTTCTTGAAAAAAACACAAACTTGAACACCTATTTTGAAAGTTTTCTGCAAGATAATTACTATAAATTATCTGCAAACAGATGTCACCTAAGGAGGTTCATCCTCTATGTAATCTGGTCACTTGACCAAAGATCAACATCCTGCATGAGAAAAAAGACCATCTGGAGAAACCATTGTTGGGTTCATGTCTTGTGTATTTGCAAATGTCTAGCTGTATTATTTGCAGATAAATGCTGTTATAGCTTCTGAGATGCCAGTTTCCGTGATGAATAGTCTTGCAAAATGTAACATCCAAATTGGGAGTAGATGTTTAAGCAGTTCCTAATTGTATCAGTCTTCTCATTTTCTGGGATCTTTAATTCATCTACTTTGACCTATAAAAATAATGTGTGAATTCAGTGTCCTTTTGAGAGCTAGATACCTAGAACTCACGGATATGGAACATGCTGTCTTAGTGTGGGAAGGCAACATTAATTTGGAGGAAGTTAAGAAGATATTATTCCAACCATCCAAAGAAATACCGATCCATCAATCTGCATTCTGCTGACTTGTGAGTTCATACCCCAATCTGGGACCAATAGTTGGGCATATTGTTAGCAGAGTTCCCTGTTTAATGTAGTATCATTTCAGTTGAGTAGTGATAGAATAGCATTGATGAATGTCCTAATCATTGTTTTGAGAACCAAGAAAACAGAAACTTACGTTGCAAGTATTTCAGTAAGTACTTGTAAATCTCAGTGATAATTGATTATCAACATGTATAATTATCATTTACGTAATAGTAGATGGTTTCCGAAACTAATGCTTGCCCTTTTTTCATTTGCAGTCCTATGGAATAAAAGTTGGATAT</genome_strand>
        <mrna_strand>ATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTCCATGACCTGACCATAGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAGCTACAGATCTGGGACACG......................................................................................................................................................................................................................................................GCTGGTCAAGAATCATTCAGATCCATTACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACATTTAATCACCTTGCTAGTTGGTTGGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTTATGGAGGCCTCAGCTAAAACAGCTCAGAATGTGGAAGAG.......................................................................................................................GCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAGGATGGAGTGTTTGATGTATCGAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATGGAATAAAAGTTGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262400" ref_strand="+" ref_description="SGN-E262400 [cLEG-56-A16]">
      <seq>agctttgctggagtcgtgccttctcttcgaaggaaaatccttcgacacgccaaaattggcaaagtagttcaataatttacgtatattcaaacgcctttgcgcctctgtaaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaatttggggctagaatgatcacaatagacaacaagcccattaaactacaaatctgggatacagcgggtcaagaatcattcagatctatcacgaggtcatactacagaggtgctgctggggcactacttgtttatgatattacaaggagggaaacatttaatcacctagctagttggctagaagatgcaaggcagcatgcaaatgcaaacatgaccataatgctgattggaaacaagtgtgatctggctcacagaagggctgtaagcaccgaggaaggcgaacaatttgccaaggaaaatgggttgatatttatggaggcctctgccaaacagctcagaatgttgaagaggcttttatcagaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25555" stop="22393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25255" g_stop="24907" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="489" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23446" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="572" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23445" i_stop="22899" i_length="547">
            <donor d_prob="0.510" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22898" g_stop="22694" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="776" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22693" i_stop="22575" i_length="119">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22574" g_stop="22558" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="793" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E262400" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25255" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23446"/>
          <exon e_start="22898" e_stop="22694"/>
          <exon e_start="22574" e_stop="22558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAGGTATTCTCTGCAGTGTCTTTGGCCTTCCCATACCTGTAGGGAACTTGAGGTTACATGTCTGATAATATAAATGAATATATTTCTTGATCTTCCTTTTATCGTTGATCAATGTTCCAGAAATATTCTTCTACAAATTCTTGTTACCCCAGGATGCATTCTAAGTGCTAAGTTCCCAGCATTATGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATTCAGTTTTTTGTTAATTTTCTTACAGAACATTTTCGATGTTTACCTAATGATCGATGAACATTCCCTTCTAATCTTTCACTTTATAACTTTTAGCCTATCTAATGATGTTCCAGTCAAATGCCTAACATGTCTTTGGCTATGAGAGCATCAGAACAAGTCTGTAAAGCTAACTATAAGCACTCGGTTATTTTGTTCTTATTCTTTTTTTCTTCAAATGAAGGAAATTTAATATTAAACTAAGGTGTATATATGAAGATATTATGGAAGTTTGGTCTATTTGATGTATTGGTGATTTTGTTTTCCCCATGCCAAAACATTTTAGGAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAGGTGGGGGATTCTTCCATCCGCTACTTTCCTGACCTTTAATATCCATCCATGGACATCTTTCTCTAACTAAACTTATAAATTGGTTGTTTATCTGGTTTCTTGTTTCTGCTGCTTTTCAGGCTTTTATCAGAACAGC</genome_strand>
        <mrna_strand>AGCTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA......................................................................................................................................................................................................................................................GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCC-AAACAGCTCAGAATGTTGAAGAG.......................................................................................................................GCTTTTATCAGAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258459" ref_strand="+" ref_description="SGN-E258459 [cLEG-47-N1]">
      <seq>agctttgctggagtcgtgccttctcttcgaaggaaaatccttcgacacgccaaaattggcaaagtagttcaataatttacgtatattcaaacgcctttgcgcctctgtaaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaatttggggctagaatgatcacaatagacaacaagcccattaaactacaaatctgggatacagcgggtcaagaatcattcagatctatcacgaggtcatactacagaggtgctgctggggcactacttgtttatgatattacaaggagggaaacatttaatcacctagctagttggctagaagatgcaaggcagcatgcaaatgcaaacatgaccataatgctgattggaaacaagtgtgatctggctcacagaagggctgtaagcaccgaggaaaggcgacaatttgccaaggaaaatgggttgatatttatggaggcctctgccaaacagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25555" stop="22409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25255" g_stop="24907" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="489" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23446" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="572" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23445" i_stop="22899" i_length="547">
            <donor d_prob="0.510" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22898" g_stop="22709" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="761" r_length="189" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E258459" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25255" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23446"/>
          <exon e_start="22898" e_stop="22709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAGGTATTCTCTGCAGTGTCTTTGGCCTTCCCATACCTGTAGGGAACTTGAGGTTACATGTCTGATAATATAAATGAATATATTTCTTGATCTTCCTTTTATCGTTGATCAATGTTCCAGAAATATTCTTCTACAAATTCTTGTTACCCCAGGATGCATTCTAAGTGCTAAGTTCCCAGCATTATGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATTCAGTTTTTTGTTAATTTTCTTACAGAACATTTTCGATGTTTACCTAATGATCGATGAACATTCCCTTCTAATCTTTCACTTTATAACTTTTAGCCTATCTAATGATGTTCCAGTCAAATGCCTAACATGTCTTTGGCTATGAGAGCATCAGAACAAGTCTGTAAAGCTAACTATAAGCACTCGGTTATTTTGTTCTTATTCTTTTTTTCTTCAAATGAAGGAAATTTAATATTAAACTAAGGTGTATATATGAAGATATTATGGAAGTTTGGTCTATTTGATGTATTGGTGATTTTGTTTTCCCCATGCCAAAACATTTTAGGAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCT</genome_strand>
        <mrna_strand>AGCTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA......................................................................................................................................................................................................................................................GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAAGGCGACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCC-AAACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269724" ref_strand="+" ref_description="SGN-E269724 [cLEM-17-D15]">
      <seq>ttttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaatttggggctagaatgatcacaatagacaacaagcccattaaactacaaatctgggatacagcgggtcaagaatcattcagatctatcacgaggtcatactacagaggtgctgctggggcactacttgtttatgatattacaaggagggaaacatttaatcacctagctagttggctagaagatgcaaggcagcatgcaaatgcaaacatgaccataatgctgattggaaacaagtgtgatctggctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25346" stop="22493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25046" g_stop="24907" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="280" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23446" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="363" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23445" i_stop="22899" i_length="547">
            <donor d_prob="0.510" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22898" g_stop="22793" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="469" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E269724" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25046" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23446"/>
          <exon e_start="22898" e_stop="22793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAGGTATTCTCTGCAGTGTCTTTGGCCTTCCCATACCTGTAGGGAACTTGAGGTTACATGTCTGATAATATAAATGAATATATTTCTTGATCTTCCTTTTATCGTTGATCAATGTTCCAGAAATATTCTTCTACAAATTCTTGTTACCCCAGGATGCATTCTAAGTGCTAAGTTCCCAGCATTATGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATTCAGTTTTTTGTTAATTTTCTTACAGAACATTTTCGATGTTTACCTAATGATCGATGAACATTCCCTTCTAATCTTTCACTTTATAACTTTTAGCCTATCTAATGATGTTCCAGTCAAATGCCTAACATGTCTTTGGCTATGAGAGCATCAGAACAAGTCTGTAAAGCTAACTATAAGCACTCGGTTATTTTGTTCTTATTCTTTTTTTCTTCAAATGAAGGAAATTTAATATTAAACTAAGGTGTATATATGAAGATATTATGGAAGTTTGGTCTATTTGATGTATTGGTGATTTTGTTTTCCCCATGCCAAAACATTTTAGGAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCAC</genome_strand>
        <mrna_strand>TTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA......................................................................................................................................................................................................................................................GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265345" ref_strand="+" ref_description="SGN-E265345 [cLEI-9-F10]">
      <seq>tcaaacgcctttgcgcctctgttaattctcccgtcgtttcttctttctctctgggcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattatggattcgtatattattttttcacgtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaatttggggctagaatgatcacaatagacaacaagcccattaaactacaaatctgggatacagcgggtcaagaatcattcagatctatcacgaggtcatactacaaaggtgctgctggggcactacttgtttatgatattacaaggagggaaacatttaatcacctacctagttggctagaagatgcaaggcagcatgcaaatgcaaacatgaccataatgctgattggaaacaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25469" stop="22506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25169" g_stop="24907" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="403" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23446" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="486" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23445" i_stop="22899" i_length="547">
            <donor d_prob="0.510" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22898" g_stop="22806" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="579" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E265345" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25169" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23446"/>
          <exon e_start="22898" e_stop="22806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAGGTATTCTCTGCAGTGTCTTTGGCCTTCCCATACCTGTAGGGAACTTGAGGTTACATGTCTGATAATATAAATGAATATATTTCTTGATCTTCCTTTTATCGTTGATCAATGTTCCAGAAATATTCTTCTACAAATTCTTGTTACCCCAGGATGCATTCTAAGTGCTAAGTTCCCAGCATTATGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATTCAGTTTTTTGTTAATTTTCTTACAGAACATTTTCGATGTTTACCTAATGATCGATGAACATTCCCTTCTAATCTTTCACTTTATAACTTTTAGCCTATCTAATGATGTTCCAGTCAAATGCCTAACATGTCTTTGGCTATGAGAGCATCAGAACAAGTCTGTAAAGCTAACTATAAGCACTCGGTTATTTTGTTCTTATTCTTTTTTTCTTCAAATGAAGGAAATTTAATATTAAACTAAGGTGTATATATGAAGATATTATGGAAGTTTGGTCTATTTGATGTATTGGTGATTTTGTTTTCCCCATGCCAAAACATTTTAGGAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTG</genome_strand>
        <mrna_strand>TCAAACGCCTTTGCGCCTCTGTTAATTCTCCCGTCGTTTCTTCTTTCTCTCTGGGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTATGGATTCGTATATTATTTTTTCACGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA......................................................................................................................................................................................................................................................GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAAAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACATTTAATCACCTACCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204477" ref_strand="+" ref_description="SGN-E204477 [cLEC-24-I7]">
      <seq>tcaataattcacgtatattcaaacgcctttgcgcctctgggaattctcccgtcgttacttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattctttcaggtaaaatatacatccacaactattgttttctacagctcagacgatattcagccatcactgtttctccggaatttgcttctcaaacatgtctcacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaattcggggctagaatgatcacaatagacaacaagcccattaaactacaaatctgggatacagcgggtcaagaatcattcagatctatcacgaggtcatactacagaggtgctgctggggcactacttgtttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25487" stop="23155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25187" g_stop="24907" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="421" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23455" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="495" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E204477" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25187" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGA</genome_strand>
        <mrna_strand>TCAATAATTCACGTATATTCAAACGCCTTTGCGCCTCTGGGAATTCTCCCGTCGTTACTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTCTTTCAGGTAAAATATACATCCACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATCACTGTTTCTCCGGAATTTGCTTCTCAAACATGTCTCACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTCGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA......................................................................................................................................................................................................................................................GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258037" ref_strand="+" ref_description="SGN-E258037 [cLEG-48-E17]">
      <seq>agctttgctggagtcgtgccttctcttcgaaggaaaatccttcgacacgccaaaattggcaaagtagttcaataatttacgtatattcaaacgcctttgcgcctctgtaaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaatttggggctagaatgatcacaatagacaacaagcccattaaactacaaatctgggatacagcgggtcaagaatcattcagatctatcacgaggtcatactacagaggtgctgctggggcactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25555" stop="23164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25255" g_stop="24907" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="489" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23464" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="554" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E258037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25255" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACT</genome_strand>
        <mrna_strand>AGCTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA......................................................................................................................................................................................................................................................GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264526" ref_strand="+" ref_description="SGN-E264526 [cLEG-67-I10]">
      <seq>agctttgctggagtcgtgccttctcttcgaaggaaaatccttcgacacgccaaaattggcaaagtagttcaataatttacgtatattcaaacgcctttgcgcctctgtaaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaatttggggctagaatgatcacaatagacaacaagcccattaaactacaaatctgggatacagcgggtcaagaatcattcagatctatcacgaggtcatactacagaggtgctgctggggcactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25555" stop="23165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25255" g_stop="24907" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="489" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23465" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="553" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E264526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25255" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTAC</genome_strand>
        <mrna_strand>AGCTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA......................................................................................................................................................................................................................................................GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397440" ref_strand="+" ref_description="SGN-E397440 [TUS-45-B4]">
      <seq>ccctttctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaacctttttttgatttgaccatcggtgttgaatttggggctagaaagatcacaatacaaaacaagcccattaaactacaaatctgggataccgcgggtcaagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25444" stop="23474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25148" g_stop="24907" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="382" r_length="140" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246">
            <donor d_prob="0.979" d_score="0.92"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23528" g_stop="23515" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="396" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E397440" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25148" e_stop="24907"/>
          <exon e_start="23914" e_stop="23775"/>
          <exon e_start="23528" e_stop="23515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACAGTTAGTGAAACATCTTTCCTTCTCTTTCTGTTGATTTAATTAAGTTTTATGCAAAAAAAAATGCTAAGATTAATTAACAGTTCAGATAGTTGTTGTGGCTACTGCTTAATAGGAACTTTGGATTATCTATCCTAATGTTCAATGTTGTGTTGTTGATGGTAGAATCGTTTTTATGGTGTAATCTTTGTTCTCTTTTGGTCGTTTGAATGACTAAAAGCATGATCTAATGAGTGTTCTCCATTACAGGCGGGTCAAGAATC</genome_strand>
        <mrna_strand>CCCTTTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCTTTTTTTGATTTGACCATCGGTGTTGAATTTGGGGCTAGAAAGATCACAATACAAAACAAGCCCATTAAACTACAAATCTGGGATACC......................................................................................................................................................................................................................................................GCGGGTCAAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201161" ref_strand="+" ref_description="SGN-E201161 [cLEC-10-L9]">
      <seq>ctttgcgcctctgtaaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgatttcaaccagttcatgatttgaccatcggtgttgaatttggggctagaatgatcacaatagacaacaagcccattnaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25461" stop="23490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25161" g_stop="24907" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23790" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="381" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E201161" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25161" e_stop="24907"/>
          <exon e_start="23914" e_stop="23790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATT-AAACTA</genome_strand>
        <mrna_strand>CTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTNAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397550" ref_strand="+" ref_description="SGN-E397550 [TUS-46-A3]">
      <seq>tatattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttctgttgcaatttactgacaaacgagttcaactttttcttgatttgaccatcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25448" stop="23541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25148" g_stop="24907" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23841" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="316" r_length="74" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E397550" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25148" e_stop="24907"/>
          <exon e_start="23914" e_stop="23841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGT</genome_strand>
        <mrna_strand>TATATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGAGTTCAACTTTTTCTTGATTTGACCATCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378469" ref_strand="+" ref_description="SGN-E378469 [TUS-46-A3]">
      <seq>ctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaatcatgtcttctgttgcaattactgacaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25423" stop="23571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25123" g_stop="24907" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23871" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="258" r_length="41" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E378469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25123" e_stop="24907"/>
          <exon e_start="23914" e_stop="23871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGA</genome_strand>
        <mrna_strand>CTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGG-AAATCATGTCTTCTGTTGCAA-TTACTGAC-AACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201529" ref_strand="+" ref_description="SGN-E201529 [cLEC-4-N5]">
      <seq>aaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttggatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcatgtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25447" stop="23594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25147" g_stop="24907" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23914" g_stop="23894" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="262" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E201529" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25147" e_stop="24907"/>
          <exon e_start="23914" e_stop="23894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATGTGGTTGTGATGTTTCTTTGCTGCTAGAATTTGAATGTTATGGTTTTTTTTGTTGTATCACTTGCTTTTTTCATATATAAATTGATGTTGATCATGTCCTCACAATGAATGGCTCATATTAAAACGGAGGATTGTATCAGCGGAATGCATTTGATCTAAAGGTCATTTGAGGATTTTTAGCAATTGTGGATGTATTGTATCATCAACTAGTGGTTTTGAGAGTCTAACTTATAGGTTCTTGTGTCTTTGTGAAAGCATGATGAGTAAGTTTAGTAATGGAATTCTTCATTGGTTGTGTAGTTTGCAAAATCTTTGACAAGTAAAACAGTTAGCCTTCTGTACCATCAATATAGAGGACAAGCTGAGAGTTGGAATATTGTGCTATAGGTTAGGCTTTCGTGTTGGCAATCTCATTGATTTAGAGATAAATTATATGCAGCTTATGGTAAAGATGATCATTCAAGAGTTTTATCATCATATCAATTTAAGAAACTGCATGGTTTACACATTGCCTTTAGGACTAATTAGGAGCACTGACATTTTGGGTAAGGATAATTTTATCTCTTGGTAGTATGCATAACGACAAACATGCTAAATAATTCTTCATGATTTGCCATGTATTTGTTTGTGTTTAAATACATACATAGACTTCCTTGTTTTTTTATGTGCTTATAGCAGTGCTCTTTCTCCTGGCGTCTCTTACTGATAAATGATTAGATTTATTGGTTAATGATGTTAAACTGAAGAAGTCTTGTATAAGACATTGTTGATAATGTTATTTATTTTGTTATGCAGGAGTTGGAAAATCATGTCTTC</genome_strand>
        <mrna_strand>AAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGGATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAATCATGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355976" ref_strand="+" ref_description="SGN-E355976 [cLHT-21-L14]">
      <seq>atttacgtatattcaaacgcctttgcgcctctgtaaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacattcacaactattgttttctacagctcacacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggtatatttttttcctgatttttctggttttatttgtgtaattttattgtttaacacctggattggatctgatcaataagttcctggtgagtttgaattgaacttagttattcttttcatgaatttttttaattatctcgatctggaataaggatttcaatatatggtaattcatttatgctgctatgaaaatgttaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25481" stop="24409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25181" g_stop="24709" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E355976" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25181" e_stop="24709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAA--TTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATG</genome_strand>
        <mrna_strand>ATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTCACAACTATTGTTTTCTACAGCTCACACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGGATTGGATCTGATCAATAAGTTCCTGGTGAGTTTGAATTGAACTTAGTTATTCTTTTCATGAATTTTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGAAAATGTTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262432" ref_strand="+" ref_description="SGN-E262432 [cLEG-56-B15]">
      <seq>ctttgctggagtcgtgccttctcttcgaaggaaaatccttcgacacgccaaaattggcaaagtagttcaataatttacgtatattcaaacgcctttgcgcctctgtaaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaactattgttttctacagctcagacgatattcagccattactctttctccggaatttgcttctcaaacatgtcttacgcctatctcttcaagtatatcatcatcggcgataccggagttggaaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25553" stop="24606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25253" g_stop="24907" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E262432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25253" e_stop="24907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG</genome_strand>
        <mrna_strand>CTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247935" ref_strand="+" ref_description="SGN-E247935 [cLEF-47-F2]">
      <seq>ttcgacacgccaaaattggcaaagtagttcaataatttacgtatattcaaacgcctttgcgcctctgtaaattctcccgtcgtttcttctttctctctccgcatcaccgacagagaagaagaagaggaaggatataccgatacagcaattattagggatttgtatattattttttcaggtaaaatatacatttacaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLf0095A17-E66x2/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLf0095A17.1" temp_strand="-" temp_description="C07SLf0095A17.1  AC236769.1 htgs_phase:2 submitted_to_sgn_as:gi|238909046|gb|AC236769.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLf0095A17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25515" stop="24716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25215" g_stop="25016" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLf0095A17.1" gen_strand="-" ref_id="SGN-E247935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLf0095A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25215" e_stop="25016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTA</genome_strand>
        <mrna_strand>TTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>83</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3201" PGL_stop="601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3201" e_stop="3074"/>
            <exon e_start="2870" e_stop="2754"/>
            <exon e_start="2675" e_stop="2622"/>
            <exon e_start="2376" e_stop="2260"/>
            <exon e_start="1878" e_stop="1782"/>
            <exon e_start="925" e_stop="601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.653" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3201" e_stop="3074" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="3073" i_stop="2871" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2870" e_stop="2754" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="2753" i_stop="2676" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2675" e_stop="2622" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.994">
            <gDNA_intron_boundary i_start="2621" i_stop="2377" i_length="245"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2376" e_stop="2260" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.974">
            <gDNA_intron_boundary i_start="2259" i_stop="1879" i_length="381"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1878" e_stop="1782" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.653" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1781" i_stop="926" i_length="856"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="925" e_stop="601" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3201" stop="3074"/>
              <exon start="2870" stop="2754"/>
              <exon start="2675" stop="2622"/>
              <exon start="2376" stop="2260"/>
              <exon start="1878" stop="1782"/>
              <exon start="925" stop="601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAGAATGACGAGAGCCTAGAAGAGGAAGAAGCTCCTGAGATATCAAAATGGGGGTCAATTATATGGCTTTCGATTTTGACACTATGGATCGCAGTCTTGTCAGAATACCTGGTTAATGCCATAGAG : GGGGCATCAGTTGCTATGAGTATTCCTGTGGCATTTATAAGTGTCATACTGCTACCGATTGTTGGAAATGCAGCTGAACATGCTGGTGCTGTCATGTTTGCAGTCAAAGACAAGCTT : GACATCTCTTTGGGAGTAGCAATAGGCTCATCAACGCAGATTGCCATGTTTGGG : ATCCCCTTCTGCGTGGTGGTTGGATGGATTATGGGTCGTCCTATGGATTTGAATTTTCAGTTATTTGAAACAGCCACGCTTTTCATGAGTGTCCTTGTTGTAGCATTCATGCTGCAG : GATGGAACTTCCAATTACTTCAAAGGACTTATGCTCCTTCTTTGCTATTTGATAGTTGCTGCAAGCTTCTTTGTGCATATAGATCCAGAGGCTATAC : AGGACAAGCCCAAAAAAACATAATAGGTGGTTTCAGATCATGTAGACCTGCTAAAGCTGAAGGTCCATAATACAAATTAGAGTTGCATATATATAAAAAAAGAGCCATTTCTTCAAGTTTTGGCCACTCTGAGCTGTATATATTAACAACAATTCAACTGTTGATGATGCTCAGAGTTCTGTATTACTAGCATCTGTGTTCAGTTGAAAAGTATATGTTGTTCTCTTAGTATTGTGTGGCAGCTGCTGATTTTTTTTTCTCCTCGAAAATGGCTGGATAGTAAAGAAATTTTTGTGTTATATATTCCTAGTAGGAAAAAAAAAAA</gDNA_template>
            <first_frame> V  R  M  T  R  A  *  K  R  K  K  L  L  R  Y  Q  N  G  G  Q  L  Y  G  F  R  F  *  H  Y  G  S  Q  S  C  Q  N  T  W  L  M  P  *  R :   G  H  Q  L  L  *  V  F  L  W  H  L  *  V  S  Y  C  Y  R  L  L  E  M  Q  L  N  M  L  V  L  S  C  L  Q  S  K  T  S  L :   T  S  L  W  E  *  Q  *  A  H  Q  R  R  L  P  C  L  G :   S  P  S  A  W  W  L  D  G  L  W  V  V  L  W  I  *  I  F  S  Y  L  K  Q  P  R  F  S  *  V  S  L  L  *  H  S  C  C  R :   M  E  L  P  I  T  S  K  D  L  C  S  F  F  A  I  *  *  L  L  Q  A  S  L  C  I  *  I  Q  R  L  Y  :  R  T  S  P  K  K  H  N  R  W  F  Q  I  M  *  T  C  *  S  *  R  S  I  I  Q  I  R  V  A  Y  I  *  K  K  S  H  F  F  K  F  W  P  L  *  A  V  Y  I  N  N  N  S  T  V  D  D  A  Q  S  S  V  L  L  A  S  V  F  S  *  K  V  Y  V  V  L  L  V  L  C  G  S  C  *  F  F  F  L  L  E  N  G  W  I  V  K  K  F  L  C  Y  I  F  L  V  G  K  K  K  </first_frame>
            <second_frame>  *  E  *  R  E  P  R  R  G  R  S  S  *  D  I  K  M  G  V  N  Y  M  A  F  D  F  D  T  M  D  R  S  L  V  R  I  P  G  *  C  H  R   : G  G  I  S  C  Y  E  Y  S  C  G  I  Y  K  C  H  T  A  T  D  C  W  K  C  S  *  T  C  W  C  C  H  V  C  S  Q  R  Q  A   : *  H  L  F  G  S  S  N  R  L  I  N  A  D  C  H  V  W   : D  P  L  L  R  G  G  W  M  D  Y  G  S  S  Y  G  F  E  F  S  V  I  *  N  S  H  A  F  H  E  C  P  C  C  S  I  H  A  A   : G  W  N  F  Q  L  L  Q  R  T  Y  A  P  S  L  L  F  D  S  C  C  K  L  L  C  A  Y  R  S  R  G  Y  T :   G  Q  A  Q  K  N  I  I  G  G  F  R  S  C  R  P  A  K  A  E  G  P  *  Y  K  L  E  L  H  I  Y  K  K  R  A  I  S  S  S  F  G  H  S  E  L  Y  I  L  T  T  I  Q  L  L  M  M  L  R  V  L  Y  Y  *  H  L  C  S  V  E  K  Y  M  L  F  S  *  Y  C  V  A  A  A  D  F  F  F  S  S  K  M  A  G  *  *  R  N  F  C  V  I  Y  S  *  *  E  K  K  K </second_frame>
            <third_frame>   E  N  D  E  S  L  E  E  E  E  A  P  E  I  S  K  W  G  S  I  I  W  L  S  I  L  T  L  W  I  A  V  L  S  E  Y  L  V  N  A  I  E  :  G  A  S  V  A  M  S  I  P  V  A  F  I  S  V  I  L  L  P  I  V  G  N  A  A  E  H  A  G  A  V  M  F  A  V  K  D  K  L  :  D  I  S  L  G  V  A  I  G  S  S  T  Q  I  A  M  F  G  :  I  P  F  C  V  V  V  G  W  I  M  G  R  P  M  D  L  N  F  Q  L  F  E  T  A  T  L  F  M  S  V  L  V  V  A  F  M  L  Q  :  D  G  T  S  N  Y  F  K  G  L  M  L  L  L  C  Y  L  I  V  A  A  S  F  F  V  H  I  D  P  E  A  I   : Q  D  K  P  K  K  T  *  *  V  V  S  D  H  V  D  L  L  K  L  K  V  H  N  T  N  *  S  C  I  Y  I  K  K  E  P  F  L  Q  V  L  A  T  L  S  C  I  Y  *  Q  Q  F  N  C  *  *  C  S  E  F  C  I  T  S  I  C  V  Q  L  K  S  I  C  C  S  L  S  I  V  W  Q  L  L  I  F  F  S  P  R  K  W  L  D  S  K  E  I  F  V  L  Y  I  P  S  R  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3199" stop="3074"/>
                    <exon start="2870" stop="2754"/>
                    <exon start="2675" stop="2622"/>
                    <exon start="2376" stop="2260"/>
                    <exon start="1878" stop="1782"/>
                    <exon start="925" stop="903"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENDESLEEEEAPEISKWGSIIWLSILTLWIAVLSEYLVNAIEGASVAMSIPVAFISVILLPIVGNAAEHAGAVMFAVKDKLDISLGVAIGSSTQIAMFGIPFCVVVGWIMGRPMDLNFQLFETATLFMSVLVVAFMLQDGTSNYFKGLMLLLCYLIVAASFFVHIDPEAIQDKPKKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9694" PGL_stop="10309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9694" e_stop="10309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="9694" e_stop="10309" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9694" stop="10309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGTAGCTATTGTGAATCATCTATTAAGTAAGTACTAGAAACATCAACAAGGAGCTGCGTCTCTGATGATACTGTGTGTTAATTCCTATGGAAACAATATATCGAGGGGGTAGAAAGAAAAAAGTGTTGGAACAAATGAGCCCGTCATGGAAAGAAATTTGTATAAAATGTGATAAAGGTGGAGAAGTGTTGGTTTGTGCTGATAGTTGTTGTCCTATAGCAGTTCATATAAGTTGCATGGGTTGTCCAGCTAGGTTTGATGATTTGGGAAAATTCTACTGCCCCTATTGTCTGTATAGGCAATCAATTGCAAGATTTCATCAAGCAAAGGGGTATGTTTTGTCAAAAAAACAAGCTCTGGATGATTTCATTGATAAGGAAATAATAGATAAGGTCAGAGAGGTGCCATCAATACTAAGCAAATCAACACGTGAAAGGTCTGATGAGCCATTACCAGAAAAGAAGAGTGATGTTCTAGAAAGCAATTGTGATCAACAATGGGTGGTTGGGCAGAAAATACTTGCAGGCCCAGCTGTTAATTGTGGTAGTAAACCTAGTGTTCGTACATCTTCTAAAGCAACATCAACCAATTTTAGAGTTTTAGAAGCTGGAAAT</gDNA_template>
            <first_frame> S  V  A  I  V  N  H  L  L  S  K  Y  *  K  H  Q  Q  G  A  A  S  L  M  I  L  C  V  N  S  Y  G  N  N  I  S  R  G  *  K  E  K  S  V  G  T  N  E  P  V  M  E  R  N  L  Y  K  M  *  *  R  W  R  S  V  G  L  C  *  *  L  L  S  Y  S  S  S  Y  K  L  H  G  L  S  S  *  V  *  *  F  G  K  I  L  L  P  L  L  S  V  *  A  I  N  C  K  I  S  S  S  K  G  V  C  F  V  K  K  T  S  S  G  *  F  H  *  *  G  N  N  R  *  G  Q  R  G  A  I  N  T  K  Q  I  N  T  *  K  V  *  *  A  I  T  R  K  E  E  *  C  S  R  K  Q  L  *  S  T  M  G  G  W  A  E  N  T  C  R  P  S  C  *  L  W  *  *  T  *  C  S  Y  I  F  *  S  N  I  N  Q  F  *  S  F  R  S  W  K  </first_frame>
            <second_frame>  Q  *  L  L  *  I  I  Y  *  V  S  T  R  N  I  N  K  E  L  R  L  *  *  Y  C  V  L  I  P  M  E  T  I  Y  R  G  G  R  K  K  K  V  L  E  Q  M  S  P  S  W  K  E  I  C  I  K  C  D  K  G  G  E  V  L  V  C  A  D  S  C  C  P  I  A  V  H  I  S  C  M  G  C  P  A  R  F  D  D  L  G  K  F  Y  C  P  Y  C  L  Y  R  Q  S  I  A  R  F  H  Q  A  K  G  Y  V  L  S  K  K  Q  A  L  D  D  F  I  D  K  E  I  I  D  K  V  R  E  V  P  S  I  L  S  K  S  T  R  E  R  S  D  E  P  L  P  E  K  K  S  D  V  L  E  S  N  C  D  Q  Q  W  V  V  G  Q  K  I  L  A  G  P  A  V  N  C  G  S  K  P  S  V  R  T  S  S  K  A  T  S  T  N  F  R  V  L  E  A  G  N </second_frame>
            <third_frame>   S  S  Y  C  E  S  S  I  K  *  V  L  E  T  S  T  R  S  C  V  S  D  D  T  V  C  *  F  L  W  K  Q  Y  I  E  G  V  E  R  K  K  C  W  N  K  *  A  R  H  G  K  K  F  V  *  N  V  I  K  V  E  K  C  W  F  V  L  I  V  V  V  L  *  Q  F  I  *  V  A  W  V  V  Q  L  G  L  M  I  W  E  N  S  T  A  P  I  V  C  I  G  N  Q  L  Q  D  F  I  K  Q  R  G  M  F  C  Q  K  N  K  L  W  M  I  S  L  I  R  K  *  *  I  R  S  E  R  C  H  Q  Y  *  A  N  Q  H  V  K  G  L  M  S  H  Y  Q  K  R  R  V  M  F  *  K  A  I  V  I  N  N  G  W  L  G  R  K  Y  L  Q  A  Q  L  L  I  V  V  V  N  L  V  F  V  H  L  L  K  Q  H  Q  P  I  L  E  F  *  K  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9764" stop="10309"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCVLIPMETIYRGGRKKKVLEQMSPSWKEICIKCDKGGEVLVCADSCCPIAVHISCMGCPARFDDLGKFYCPYCLYRQSIARFHQAKGYVLSKKQALDDFIDKEIIDKVREVPSILSKSTRERSDEPLPEKKSDVLESNCDQQWVVGQKILAGPAVNCGSKPSVRTSSKATSTNFRVLEAGN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10335" PGL_stop="12360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10335" e_stop="10764"/>
            <exon e_start="10858" e_stop="10927"/>
            <exon e_start="12256" e_stop="12360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="0.950" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="10335" e_stop="10764" e_length="430"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="10765" i_stop="10857" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10858" e_stop="10927" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.996">
            <gDNA_intron_boundary i_start="10928" i_stop="12255" i_length="1328"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="12256" e_stop="12360" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10335" stop="10764"/>
              <exon start="10858" stop="10927"/>
              <exon start="12256" stop="12360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTGGTGAAGACCAACAAGAGAAAAGTGTTGAAGACCACCACAAAGATGGCCACTTAAGTAACTCTTCTGTTGCTGAAGAGGAAATATTGGGGAATGAACTTGTTCTGGAAGAACCAAAAAGAAACTCCACTGAAATTGCAGGAGAACAGATGACAAAGGTTGATCAAACTACTGCAATTGTCATACACACAGATCCTTTGTTGCAGCAGCACTTGCATGGTAAAAGAAGAGCTGAAACTGTGGATTTAACATGTAGAAAATCTAAGCGTGTTTCAACACAACGTAAGTGCGGTAAACAGGTTAACAAAGTTAGAGATGAGCATATGCTGACTGACTTTCCAAGAATGTTAACTAGGAAATCAGCTTCCTTACTTGAGAATGATAATGCAGCGGGCATGTTTGTGCAAGTTAAAAAGCCTTCCACGTT : ACCAGATATCCTTCCAAACGGGCAACGTAAAAGAGTATTATGGCGTCGCGAAGAGGAAGAGATGATTGAG : GAAGGAGTTCAAAAATTCTCATCCAAAGTAAACAAAAACACCCCATGGAGAAAAATTCTAGACTTTGGTCATCATGTGTTTGATCATTCTCGCACTCCAACTGAT</gDNA_template>
            <first_frame> K  L  V  K  T  N  K  R  K  V  L  K  T  T  T  K  M  A  T  *  V  T  L  L  L  L  K  R  K  Y  W  G  M  N  L  F  W  K  N  Q  K  E  T  P  L  K  L  Q  E  N  R  *  Q  R  L  I  K  L  L  Q  L  S  Y  T  Q  I  L  C  C  S  S  T  C  M  V  K  E  E  L  K  L  W  I  *  H  V  E  N  L  S  V  F  Q  H  N  V  S  A  V  N  R  L  T  K  L  E  M  S  I  C  *  L  T  F  Q  E  C  *  L  G  N  Q  L  P  Y  L  R  M  I  M  Q  R  A  C  L  C  K  L  K  S  L  P  R   : Y  Q  I  S  F  Q  T  G  N  V  K  E  Y  Y  G  V  A  K  R  K  R  *  L  R :   K  E  F  K  N  S  H  P  K  *  T  K  T  P  H  G  E  K  F  *  T  L  V  I  M  C  L  I  I  L  A  L  Q  L   </first_frame>
            <second_frame>  S  W  *  R  P  T  R  E  K  C  *  R  P  P  Q  R  W  P  L  K  *  L  F  C  C  *  R  G  N  I  G  E  *  T  C  S  G  R  T  K  K  K  L  H  *  N  C  R  R  T  D  D  K  G  *  S  N  Y  C  N  C  H  T  H  R  S  F  V  A  A  A  L  A  W  *  K  K  S  *  N  C  G  F  N  M  *  K  I  *  A  C  F  N  T  T  *  V  R  *  T  G  *  Q  S  *  R  *  A  Y  A  D  *  L  S  K  N  V  N  *  E  I  S  F  L  T  *  E  *  *  C  S  G  H  V  C  A  S  *  K  A  F  H  V  :  T  R  Y  P  S  K  R  A  T  *  K  S  I  M  A  S  R  R  G  R  D  D  *   : G  R  S  S  K  I  L  I  Q  S  K  Q  K  H  P  M  E  K  N  S  R  L  W  S  S  C  V  *  S  F  S  H  S  N  *  </second_frame>
            <third_frame>   V  G  E  D  Q  Q  E  K  S  V  E  D  H  H  K  D  G  H  L  S  N  S  S  V  A  E  E  E  I  L  G  N  E  L  V  L  E  E  P  K  R  N  S  T  E  I  A  G  E  Q  M  T  K  V  D  Q  T  T  A  I  V  I  H  T  D  P  L  L  Q  Q  H  L  H  G  K  R  R  A  E  T  V  D  L  T  C  R  K  S  K  R  V  S  T  Q  R  K  C  G  K  Q  V  N  K  V  R  D  E  H  M  L  T  D  F  P  R  M  L  T  R  K  S  A  S  L  L  E  N  D  N  A  A  G  M  F  V  Q  V  K  K  P  S  T  L :   P  D  I  L  P  N  G  Q  R  K  R  V  L  W  R  R  E  E  E  E  M  I  E  :  E  G  V  Q  K  F  S  S  K  V  N  K  N  T  P  W  R  K  I  L  D  F  G  H  H  V  F  D  H  S  R  T  P  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10337" stop="10764"/>
                    <exon start="10858" stop="10927"/>
                    <exon start="12256" stop="12360"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGEDQQEKSVEDHHKDGHLSNSSVAEEEILGNELVLEEPKRNSTEIAGEQMTKVDQTTAIVIHTDPLLQQHLHGKRRAETVDLTCRKSKRVSTQRKCGKQVNKVRDEHMLTDFPRMLTRKSASLLENDNAAGMFVQVKKPSTLPDILPNGQRKRVLWRREEEEMIEEGVQKFSSKVNKNTPWRKILDFGHHVFDHSRTPTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13070" PGL_stop="13325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13070" e_stop="13325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13070" e_stop="13325" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13070" stop="13325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13070" stop="13325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13070" stop="13325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13070" stop="13325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357410" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATTGAAATTTTAGTTTGGAGTTTGTGTTTATTTATGATGTTTGAGCAGAACTTGGACATTTGATTTTAGATTTCAAATTTCTAATTCTATTGAAAAATAGAATTTGAATTTCAAGTATGTGATTTTAATTATTATTTTTTTATAAAAAGAAAATTATAGCTTGCCTCATAAGTTTTTTTGCAAAAATAGGCTTATGCTCGGCTTCAAGAAATTGTTCAGAGGGATTATGTTAAAGAATAGTTAGTTACGACT</gDNA_template>
            <first_frame> Q  N  *  N  F  S  L  E  F  V  F  I  Y  D  V  *  A  E  L  G  H  L  I  L  D  F  K  F  L  I  L  L  K  N  R  I  *  I  S  S  M  *  F  *  L  L  F  F  Y  K  K  K  I  I  A  C  L  I  S  F  F  A  K  I  G  L  C  S  A  S  R  N  C  S  E  G  L  C  *  R  I  V  S  Y  D  </first_frame>
            <second_frame>  K  I  E  I  L  V  W  S  L  C  L  F  M  M  F  E  Q  N  L  D  I  *  F  *  I  S  N  F  *  F  Y  *  K  I  E  F  E  F  Q  V  C  D  F  N  Y  Y  F  F  I  K  R  K  L  *  L  A  S  *  V  F  L  Q  K  *  A  Y  A  R  L  Q  E  I  V  Q  R  D  Y  V  K  E  *  L  V  T  T </second_frame>
            <third_frame>   K  L  K  F  *  F  G  V  C  V  Y  L  *  C  L  S  R  T  W  T  F  D  F  R  F  Q  I  S  N  S  I  E  K  *  N  L  N  F  K  Y  V  I  L  I  I  I  F  L  *  K  E  N  Y  S  L  P  H  K  F  F  C  K  N  R  L  M  L  G  F  K  K  L  F  R  G  I  M  L  K  N  S  *  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLf0095A17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="19917" PGL_stop="15083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19917" e_stop="19574"/>
            <exon e_start="18720" e_stop="18424"/>
            <exon e_start="18138" e_stop="17869"/>
            <exon e_start="17775" e_stop="17596"/>
            <exon e_start="17199" e_stop="17096"/>
            <exon e_start="16990" e_stop="16879"/>
            <exon e_start="16270" e_stop="16172"/>
            <exon e_start="15942" e_stop="15823"/>
            <exon e_start="15689" e_stop="15282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.649" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19917" e_stop="19574" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18720" e_stop="18424" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18138" e_stop="17869" e_length="270"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17775" e_stop="17596" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17199" e_stop="17096" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.880" acc_prob="0.649">
            <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16990" e_stop="16879" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16270" e_stop="16172" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15942" e_stop="15823" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="0.983">
            <gDNA_exon_boundary e_start="15689" e_stop="15282" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19917" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19910" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19903" stop="19662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19901" stop="19574"/>
              <exon start="18720" stop="18700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19898" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19897" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19887" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19886" stop="19574"/>
              <exon start="18720" stop="18551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19884" stop="19574"/>
              <exon start="18720" stop="18475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19881" stop="19574"/>
              <exon start="18720" stop="18577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19880" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19879" stop="19574"/>
              <exon start="18720" stop="18609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19872" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19862" stop="19574"/>
              <exon start="18720" stop="18508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19861" stop="19574"/>
              <exon start="18720" stop="18570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19856" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19855" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19846" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19655" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19612" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18653" stop="18424"/>
              <exon start="18138" stop="17883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18494" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18458" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18051" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17986" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17931" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17926" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17895" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17891" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17715" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16207" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15904" stop="15823"/>
              <exon start="15689" stop="15377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284006" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15904" stop="15823"/>
              <exon start="15689" stop="15390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTGTAATTAAGTGCAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG : AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG : GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA : GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA : GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG : CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG : AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG : ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG : ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCTCACTTTTGCTTTATGTTTACTTGTGTTTCATCATCTCTGTATGTTTATAGTGAAAAAGAATTATTTGTTCTTCATCAATTTTCATGAA</gDNA_template>
            <first_frame> Q  L  *  L  S  A  I  T  L  Y  H  T  L  S  I  V  S  I  V  E  S  K  L  C  *  Q  W  R  L  P  L  E  P  *  N  L  H  L  L  P  T  I  A  S  M  R  E  E  M  I  L  H  V  Q  Y  P  A  E  I  S  H  F  R  L  L  I  S  P  E  T  S  *  C  L  Y  R  P  Y  V  P  K  E  Y  D  S  M  *  E  E  V  H  *  L  C  L  L  R  L  F  L  I  R  R  I  H  R  H  V  W  T  Q  M  L  A  G :   V  F  W  E  L  F  L  E  V  E  L  G  P  D  F  I  L  *  L  K  K  E  Q  N  L  R  F  H  L  E  Q  I  I  V  *  L  T  F  P  *  A  I  A  *  T  V  T  Y  P  R  S  M  F  S  H  N  S  T  L  P  L  *  I  A  T  F  H  G  H  M  L  A  I  W  E  D  T  K  T  R  A  L  W  K  F  L  L  L  N  K  V  R  R  T  P  I  G  S  R :   A  L  R  T  L  S  D  N  I  C  G  C  L  R  S  I  M  F  L  N  T  L  Y  L  L  E  I  I  C  I  E  W  I  M  K  S  L  F  K  P  T  G  K  Q  M  L  I  L  P  L  P  H  C  Q  W  T  R  S  V  P  L  H  S  V  S  *  R  L  M  K  K  D  A  L  L  N  L  Q  R  N  R  K  E  S  N  C  K  Q  *  K :   W  I  L  P  F  *  V  L  M  T  R  E  L  K  K  C  L  L  S  P  V  W  V  Y  M  S  L  A  K  T  *  C  *  T  Y  F  V  T  S  F  L  G  P  M  I  L  V  V  K  L  F  L  V  Q  L  H  L  G  *  E :   C  K  L  I  Y  M  M  G  T  G  K  I  L  V  P  L  K  L  S  T  M  P  I  W  A  L  Q  K  S  R  C  Q  I  L   : A  F  T  T  D  Q  P  Q  S  T  P  N  L  D  I  C  H  L  Q  K  C  L  M  P  M  S  Q  I  V  S  L  V  K  V  V  *  S  R :   T  V  R  F  T  I  P  W  L  G  S  D  H  A  Y  Q  R  E  Q  L  *  K  T  H  F  *  W  G  Q  I  T  T  R :   L  M  L  T  G  S  C  W  L  Q  R  A  V  S  Q  L  A  S  A  R  I  V  T  S  K  E  P  L  S  T  R  M  L  V  *  G  T  M  *  R :   S  L  T  K  T  M  F  K  K  R  L  G  K  Q  M  D  T  S  S  R  V  G  L  S  L  S  S  R  M  L  *  F  Q  V  E  S  S  F  K  G  T  R  Y  N  L  V  A  L  Q  D  F  G  *  T  A  M  R  Y  K  R  A  E  V  L  F  S  Y  A  V  E  I  *  C  T  S  C  F  Y  D  T  S  H  Y  L  V  A  V  K  I  I  R  L  K  *  K  *  I  Y  H  Y  T  R  S  A  L  I  S  L  L  L  Y  V  Y  L  C  F  I  I  S  V  C  L  *  *  K  R  I  I  C  S  S  S  I  F  M   </first_frame>
            <second_frame>  S  C  N  *  V  Q  S  H  S  T  T  H  S  L  *  Y  L  *  L  R  A  S  F  V  N  N  G  G  F  H  W  S  L  K  I  F  T  F  F  P  Q  L  H  Q  *  E  K  K  *  F  Y  T  C  N  I  Q  Q  K  S  L  I  F  V  F  S  S  R  R  R  Q  V  D  A  C  I  V  L  T  F  P  R  S  T  I  Q  C  E  K  K  S  I  D  C  V  S  *  G  C  F  *  F  A  E  F  T  D  M  S  G  P  R  C  *  Q   : E  C  F  G  N  Y  S  W  R  W  S  W  D  P  T  L  S  S  N  *  K  K  S  K  T  C  G  S  T  W  S  K  L  S  S  D  *  H  S  R  K  Q  L  L  E  Q  *  H  I  Q  D  L  C  S  H  T  I  Q  L  C  L  S  K  S  P  P  F  T  G  I  C  *  Q  Y  G  R  I  Q  K  R  G  L  C  G  S  S  C  C  S  T  K  S  G  E  P  R  L  V  P   : G  H  C  G  R  C  Q  T  I  S  V  V  V  *  G  A  *  C  S  *  I  P  Y  T  C  W  R  S  S  V  S  N  G  L  *  K  V  Y  S  S  P  Q  G  N  R  C  *  Y  Y  R  C  R  T  A  N  G  R  E  A  C  H  C  I  R  S  H  E  D  *  *  R  R  T  H  Y  *  I  C  R  E  T  A  R  R  A  I  A  S  N  E   : S  G  Y  Y  H  F  R  S  *  *  Q  E  S  *  R  N  A  F  Y  R  Q  Y  G  Y  I  C  H  *  Q  R  R  D  V  K  P  T  S  *  Q  V  S  W  G  Q  *  F  W  *  *  S  Y  S  W  C  N  F  I  W  D  E   : S  A  S  L  F  I  *  W  V  L  G  R  Y  W  Y  H  *  S  F  L  Q  C  Q  F  G  H  Y  K  K  A  G  A  R  F  *  :  L  L  R  P  I  S  P  N  L  H  P  T  S  I  F  A  T  F  K  N  A  *  C  R  C  H  R  *  C  H  W  *  R  L  C  D  Q   : E  L  *  D  S  P  F  R  G  W  A  Q  I  M  H  I  R  G  S  N  Y  R  R  L  T  F  D  G  G  R  L  L  R   : D  *  C  *  Q  E  A  A  G  C  K  G  Q  C  P  N  W  H  R  Q  E  L  S  H  Q  K  S  H  Y  R  Q  E  C  S  Y  R  G  Q  C  E   : D  H  *  Q  R  Q  C  S  R  S  G  *  G  N  R  W  I  L  H  Q  E  W  D  C  H  C  H  Q  G  C  F  D  S  K  W  N  R  H  L  K  E  R  V  I  T  W  L  P  S  K  I  L  A  K  Q  P  *  G  T  N  V  P  K  F  Y  F  P  M  L  *  K  S  S  V  H  L  A  F  M  I  L  L  I  T  W  L  L  *  K  L  F  V  *  N  K  N  K  S  T  I  T  P  D  L  L  *  S  H  F  C  F  M  F  T  C  V  S  S  S  L  Y  V  Y  S  E  K  E  L  F  V  L  H  Q  F  S  *  </second_frame>
            <third_frame>   A  V  I  K  C  N  H  T  L  P  H  T  L  Y  S  I  Y  S  *  E  Q  A  L  L  T  M  A  A  S  I  G  A  L  K  S  S  P  S  S  H  N  C  I  N  E  R  R  N  D  S  T  R  A  I  S  S  R  N  L  S  F  S  S  S  H  L  A  G  D  K  L  M  P  V  S  S  L  R  S  Q  G  V  R  F  N  V  R  R  S  P  L  I  V  S  P  K  A  V  S  D  S  Q  N  S  Q  T  C  L  D  P  D  A  S  R  :  S  V  L  G  I  I  L  G  G  G  A  G  T  R  L  Y  P  L  T  K  K  R  A  K  P  A  V  P  L  G  A  N  Y  R  L  I  D  I  P  V  S  N  C  L  N  S  N  I  S  K  I  Y  V  L  T  Q  F  N  S  A  S  L  N  R  H  L  S  R  A  Y  A  S  N  M  G  G  Y  K  N  E  G  F  V  E  V  L  A  A  Q  Q  S  P  E  N  P  D  W  F  Q  :  G  T  A  D  A  V  R  Q  Y  L  W  L  F  E  E  H  N  V  L  E  Y  L  I  L  A  G  D  H  L  Y  R  M  D  Y  E  K  F  I  Q  A  H  R  E  T  D  A  D  I  T  V  A  A  L  P  M  D  E  K  R  A  T  A  F  G  L  M  K  I  D  E  E  G  R  I  I  E  F  A  E  K  P  Q  G  E  Q  L  Q  A  M  K  :  V  D  T  T  I  L  G  L  D  D  K  R  A  K  E  M  P  F  I  A  S  M  G  I  Y  V  I  S  K  D  V  M  L  N  L  L  R  D  K  F  P  G  A  N  D  F  G  S  E  V  I  P  G  A  T  S  F  G  M  R  :  V  Q  A  Y  L  Y  D  G  Y  W  E  D  I  G  T  I  E  A  F  Y  N  A  N  L  G  I  T  K  K  P  V  P  D  F  S :   F  Y  D  R  S  A  P  I  Y  T  Q  P  R  Y  L  P  P  S  K  M  L  D  A  D  V  T  D  S  V  I  G  E  G  C  V  I  K  :  N  C  K  I  H  H  S  V  V  G  L  R  S  C  I  S  E  G  A  I  I  E  D  S  L  L  M  G  A  D  Y  Y  E  :  T  D  A  D  R  K  L  L  A  A  K  G  S  V  P  I  G  I  G  K  N  C  H  I  K  R  A  I  I  D  K  N  A  R  I  G  D  N  V  K  :  I  I  N  K  D  N  V  Q  E  A  A  R  E  T  D  G  Y  F  I  K  S  G  I  V  T  V  I  K  D  A  L  I  P  S  G  I  V  I  *  R  N  A  L  *  L  G  C  P  P  R  F  W  L  N  S  H  E  V  Q  T  C  R  S  F  I  F  L  C  C  R  N  L  V  Y  I  L  L  L  *  Y  F  S  L  P  G  C  C  K  N  Y  S  S  K  I  K  I  N  L  P  L  H  Q  I  C  F  D  L  T  F  A  L  C  L  L  V  F  H  H  L  C  M  F  I  V  K  K  N  Y  L  F  F  I  N  F  H  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19858" stop="19574"/>
                    <exon start="18720" stop="18424"/>
                    <exon start="18138" stop="17869"/>
                    <exon start="17775" stop="17596"/>
                    <exon start="17199" stop="17096"/>
                    <exon start="16990" stop="16879"/>
                    <exon start="16270" stop="16172"/>
                    <exon start="15942" stop="15823"/>
                    <exon start="15689" stop="15573"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1581</number_coding_nucleotides>
                  <number_encoded_amino_acids>527</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQALLTMAASIGALKSSPSSHNCINERRNDSTRAISSRNLSFSSSHLAGDKLMPVSSLRSQGVRFNVRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSFGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19917" e_stop="19574"/>
            <exon e_start="18720" e_stop="18424"/>
            <exon e_start="18138" e_stop="17869"/>
            <exon e_start="17775" e_stop="17596"/>
            <exon e_start="17199" e_stop="17096"/>
            <exon e_start="16990" e_stop="16879"/>
            <exon e_start="16270" e_stop="16172"/>
            <exon e_start="15942" e_stop="15823"/>
            <exon e_start="15689" e_stop="15370"/>
            <exon e_start="15097" e_stop="15086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.649" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19917" e_stop="19574" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18720" e_stop="18424" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18138" e_stop="17869" e_length="270"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17775" e_stop="17596" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17199" e_stop="17096" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.880" acc_prob="0.649">
            <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16990" e_stop="16879" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16270" e_stop="16172" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15942" e_stop="15823" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15689" e_stop="15370" e_length="320"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="15369" i_stop="15098" i_length="272"/>
          </intron>
          <exon e_serial="10" e_score="0.750">
            <gDNA_exon_boundary e_start="15097" e_stop="15086" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19917" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19910" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19903" stop="19662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19901" stop="19574"/>
              <exon start="18720" stop="18700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19898" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19897" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19887" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19886" stop="19574"/>
              <exon start="18720" stop="18551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19884" stop="19574"/>
              <exon start="18720" stop="18475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19881" stop="19574"/>
              <exon start="18720" stop="18577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19880" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19879" stop="19574"/>
              <exon start="18720" stop="18609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19872" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19862" stop="19574"/>
              <exon start="18720" stop="18508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19861" stop="19574"/>
              <exon start="18720" stop="18570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19856" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19855" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19846" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19655" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19612" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18653" stop="18424"/>
              <exon start="18138" stop="17883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18494" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18458" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18051" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17986" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17931" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17926" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17895" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17891" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17715" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17163" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15370"/>
              <exon start="15097" stop="15086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15904" stop="15823"/>
              <exon start="15689" stop="15377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284006" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15904" stop="15823"/>
              <exon start="15689" stop="15390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTGTAATTAAGTGCAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG : AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG : GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA : GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA : GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG : CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG : AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG : ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG : ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGATCTGCTTTGATCT : CTAGAAGAAAAA</gDNA_template>
            <first_frame> Q  L  *  L  S  A  I  T  L  Y  H  T  L  S  I  V  S  I  V  E  S  K  L  C  *  Q  W  R  L  P  L  E  P  *  N  L  H  L  L  P  T  I  A  S  M  R  E  E  M  I  L  H  V  Q  Y  P  A  E  I  S  H  F  R  L  L  I  S  P  E  T  S  *  C  L  Y  R  P  Y  V  P  K  E  Y  D  S  M  *  E  E  V  H  *  L  C  L  L  R  L  F  L  I  R  R  I  H  R  H  V  W  T  Q  M  L  A  G :   V  F  W  E  L  F  L  E  V  E  L  G  P  D  F  I  L  *  L  K  K  E  Q  N  L  R  F  H  L  E  Q  I  I  V  *  L  T  F  P  *  A  I  A  *  T  V  T  Y  P  R  S  M  F  S  H  N  S  T  L  P  L  *  I  A  T  F  H  G  H  M  L  A  I  W  E  D  T  K  T  R  A  L  W  K  F  L  L  L  N  K  V  R  R  T  P  I  G  S  R :   A  L  R  T  L  S  D  N  I  C  G  C  L  R  S  I  M  F  L  N  T  L  Y  L  L  E  I  I  C  I  E  W  I  M  K  S  L  F  K  P  T  G  K  Q  M  L  I  L  P  L  P  H  C  Q  W  T  R  S  V  P  L  H  S  V  S  *  R  L  M  K  K  D  A  L  L  N  L  Q  R  N  R  K  E  S  N  C  K  Q  *  K :   W  I  L  P  F  *  V  L  M  T  R  E  L  K  K  C  L  L  S  P  V  W  V  Y  M  S  L  A  K  T  *  C  *  T  Y  F  V  T  S  F  L  G  P  M  I  L  V  V  K  L  F  L  V  Q  L  H  L  G  *  E :   C  K  L  I  Y  M  M  G  T  G  K  I  L  V  P  L  K  L  S  T  M  P  I  W  A  L  Q  K  S  R  C  Q  I  L   : A  F  T  T  D  Q  P  Q  S  T  P  N  L  D  I  C  H  L  Q  K  C  L  M  P  M  S  Q  I  V  S  L  V  K  V  V  *  S  R :   T  V  R  F  T  I  P  W  L  G  S  D  H  A  Y  Q  R  E  Q  L  *  K  T  H  F  *  W  G  Q  I  T  T  R :   L  M  L  T  G  S  C  W  L  Q  R  A  V  S  Q  L  A  S  A  R  I  V  T  S  K  E  P  L  S  T  R  M  L  V  *  G  T  M  *  R :   S  L  T  K  T  M  F  K  K  R  L  G  K  Q  M  D  T  S  S  R  V  G  L  S  L  S  S  R  M  L  *  F  Q  V  E  S  S  F  K  G  T  R  Y  N  L  V  A  L  Q  D  F  G  *  T  A  M  R  Y  K  R  A  E  V  L  F  S  Y  A  V  E  I  *  C  T  S  C  F  Y  D  T  S  H  Y  L  V  A  V  K  I  I  R  L  K  *  K  *  I  Y  H  Y  T  R  S  A  L  I   : S  R  R  K  </first_frame>
            <second_frame>  S  C  N  *  V  Q  S  H  S  T  T  H  S  L  *  Y  L  *  L  R  A  S  F  V  N  N  G  G  F  H  W  S  L  K  I  F  T  F  F  P  Q  L  H  Q  *  E  K  K  *  F  Y  T  C  N  I  Q  Q  K  S  L  I  F  V  F  S  S  R  R  R  Q  V  D  A  C  I  V  L  T  F  P  R  S  T  I  Q  C  E  K  K  S  I  D  C  V  S  *  G  C  F  *  F  A  E  F  T  D  M  S  G  P  R  C  *  Q   : E  C  F  G  N  Y  S  W  R  W  S  W  D  P  T  L  S  S  N  *  K  K  S  K  T  C  G  S  T  W  S  K  L  S  S  D  *  H  S  R  K  Q  L  L  E  Q  *  H  I  Q  D  L  C  S  H  T  I  Q  L  C  L  S  K  S  P  P  F  T  G  I  C  *  Q  Y  G  R  I  Q  K  R  G  L  C  G  S  S  C  C  S  T  K  S  G  E  P  R  L  V  P   : G  H  C  G  R  C  Q  T  I  S  V  V  V  *  G  A  *  C  S  *  I  P  Y  T  C  W  R  S  S  V  S  N  G  L  *  K  V  Y  S  S  P  Q  G  N  R  C  *  Y  Y  R  C  R  T  A  N  G  R  E  A  C  H  C  I  R  S  H  E  D  *  *  R  R  T  H  Y  *  I  C  R  E  T  A  R  R  A  I  A  S  N  E   : S  G  Y  Y  H  F  R  S  *  *  Q  E  S  *  R  N  A  F  Y  R  Q  Y  G  Y  I  C  H  *  Q  R  R  D  V  K  P  T  S  *  Q  V  S  W  G  Q  *  F  W  *  *  S  Y  S  W  C  N  F  I  W  D  E   : S  A  S  L  F  I  *  W  V  L  G  R  Y  W  Y  H  *  S  F  L  Q  C  Q  F  G  H  Y  K  K  A  G  A  R  F  *  :  L  L  R  P  I  S  P  N  L  H  P  T  S  I  F  A  T  F  K  N  A  *  C  R  C  H  R  *  C  H  W  *  R  L  C  D  Q   : E  L  *  D  S  P  F  R  G  W  A  Q  I  M  H  I  R  G  S  N  Y  R  R  L  T  F  D  G  G  R  L  L  R   : D  *  C  *  Q  E  A  A  G  C  K  G  Q  C  P  N  W  H  R  Q  E  L  S  H  Q  K  S  H  Y  R  Q  E  C  S  Y  R  G  Q  C  E   : D  H  *  Q  R  Q  C  S  R  S  G  *  G  N  R  W  I  L  H  Q  E  W  D  C  H  C  H  Q  G  C  F  D  S  K  W  N  R  H  L  K  E  R  V  I  T  W  L  P  S  K  I  L  A  K  Q  P  *  G  T  N  V  P  K  F  Y  F  P  M  L  *  K  S  S  V  H  L  A  F  M  I  L  L  I  T  W  L  L  *  K  L  F  V  *  N  K  N  K  S  T  I  T  P  D  L  L  *  S  :  L  E  E  K </second_frame>
            <third_frame>   A  V  I  K  C  N  H  T  L  P  H  T  L  Y  S  I  Y  S  *  E  Q  A  L  L  T  M  A  A  S  I  G  A  L  K  S  S  P  S  S  H  N  C  I  N  E  R  R  N  D  S  T  R  A  I  S  S  R  N  L  S  F  S  S  S  H  L  A  G  D  K  L  M  P  V  S  S  L  R  S  Q  G  V  R  F  N  V  R  R  S  P  L  I  V  S  P  K  A  V  S  D  S  Q  N  S  Q  T  C  L  D  P  D  A  S  R  :  S  V  L  G  I  I  L  G  G  G  A  G  T  R  L  Y  P  L  T  K  K  R  A  K  P  A  V  P  L  G  A  N  Y  R  L  I  D  I  P  V  S  N  C  L  N  S  N  I  S  K  I  Y  V  L  T  Q  F  N  S  A  S  L  N  R  H  L  S  R  A  Y  A  S  N  M  G  G  Y  K  N  E  G  F  V  E  V  L  A  A  Q  Q  S  P  E  N  P  D  W  F  Q  :  G  T  A  D  A  V  R  Q  Y  L  W  L  F  E  E  H  N  V  L  E  Y  L  I  L  A  G  D  H  L  Y  R  M  D  Y  E  K  F  I  Q  A  H  R  E  T  D  A  D  I  T  V  A  A  L  P  M  D  E  K  R  A  T  A  F  G  L  M  K  I  D  E  E  G  R  I  I  E  F  A  E  K  P  Q  G  E  Q  L  Q  A  M  K  :  V  D  T  T  I  L  G  L  D  D  K  R  A  K  E  M  P  F  I  A  S  M  G  I  Y  V  I  S  K  D  V  M  L  N  L  L  R  D  K  F  P  G  A  N  D  F  G  S  E  V  I  P  G  A  T  S  F  G  M  R  :  V  Q  A  Y  L  Y  D  G  Y  W  E  D  I  G  T  I  E  A  F  Y  N  A  N  L  G  I  T  K  K  P  V  P  D  F  S :   F  Y  D  R  S  A  P  I  Y  T  Q  P  R  Y  L  P  P  S  K  M  L  D  A  D  V  T  D  S  V  I  G  E  G  C  V  I  K  :  N  C  K  I  H  H  S  V  V  G  L  R  S  C  I  S  E  G  A  I  I  E  D  S  L  L  M  G  A  D  Y  Y  E  :  T  D  A  D  R  K  L  L  A  A  K  G  S  V  P  I  G  I  G  K  N  C  H  I  K  R  A  I  I  D  K  N  A  R  I  G  D  N  V  K  :  I  I  N  K  D  N  V  Q  E  A  A  R  E  T  D  G  Y  F  I  K  S  G  I  V  T  V  I  K  D  A  L  I  P  S  G  I  V  I  *  R  N  A  L  *  L  G  C  P  P  R  F  W  L  N  S  H  E  V  Q  T  C  R  S  F  I  F  L  C  C  R  N  L  V  Y  I  L  L  L  *  Y  F  S  L  P  G  C  C  K  N  Y  S  S  K  I  K  I  N  L  P  L  H  Q  I  C  F  D  L :   *  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19858" stop="19574"/>
                    <exon start="18720" stop="18424"/>
                    <exon start="18138" stop="17869"/>
                    <exon start="17775" stop="17596"/>
                    <exon start="17199" stop="17096"/>
                    <exon start="16990" stop="16879"/>
                    <exon start="16270" stop="16172"/>
                    <exon start="15942" stop="15823"/>
                    <exon start="15689" stop="15573"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1581</number_coding_nucleotides>
                  <number_encoded_amino_acids>527</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQALLTMAASIGALKSSPSSHNCINERRNDSTRAISSRNLSFSSSHLAGDKLMPVSSLRSQGVRFNVRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSFGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="19917" e_stop="19574"/>
            <exon e_start="18720" e_stop="18424"/>
            <exon e_start="18138" e_stop="17869"/>
            <exon e_start="17775" e_stop="17596"/>
            <exon e_start="17199" e_stop="17096"/>
            <exon e_start="16990" e_stop="16879"/>
            <exon e_start="16270" e_stop="16172"/>
            <exon e_start="15942" e_stop="15823"/>
            <exon e_start="15689" e_stop="15383"/>
            <exon e_start="15097" e_stop="15083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.649" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.992"/>
          <exon-intron don_prob="0.000" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19917" e_stop="19574" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18720" e_stop="18424" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18138" e_stop="17869" e_length="270"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17775" e_stop="17596" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17199" e_stop="17096" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.880" acc_prob="0.649">
            <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16990" e_stop="16879" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16270" e_stop="16172" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="15942" e_stop="15823" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15689" e_stop="15383" e_length="307"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="15382" i_stop="15098" i_length="285"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="15097" e_stop="15083" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19917" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19910" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19903" stop="19662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19901" stop="19574"/>
              <exon start="18720" stop="18700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19898" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19897" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19887" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19886" stop="19574"/>
              <exon start="18720" stop="18551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19884" stop="19574"/>
              <exon start="18720" stop="18475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19881" stop="19574"/>
              <exon start="18720" stop="18577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19880" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19879" stop="19574"/>
              <exon start="18720" stop="18609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19872" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19862" stop="19574"/>
              <exon start="18720" stop="18508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19861" stop="19574"/>
              <exon start="18720" stop="18570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19856" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19855" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19846" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19655" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19612" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18653" stop="18424"/>
              <exon start="18138" stop="17883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18494" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18458" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18051" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17986" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17931" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17926" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17895" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17891" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17715" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17134" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15383"/>
              <exon start="15097" stop="15083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15904" stop="15823"/>
              <exon start="15689" stop="15390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTGTAATTAAGTGCAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG : AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG : GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA : GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA : GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG : CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG : AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG : ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG : ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACACCAGA : CTAGAAGAAAAATGA</gDNA_template>
            <first_frame> Q  L  *  L  S  A  I  T  L  Y  H  T  L  S  I  V  S  I  V  E  S  K  L  C  *  Q  W  R  L  P  L  E  P  *  N  L  H  L  L  P  T  I  A  S  M  R  E  E  M  I  L  H  V  Q  Y  P  A  E  I  S  H  F  R  L  L  I  S  P  E  T  S  *  C  L  Y  R  P  Y  V  P  K  E  Y  D  S  M  *  E  E  V  H  *  L  C  L  L  R  L  F  L  I  R  R  I  H  R  H  V  W  T  Q  M  L  A  G :   V  F  W  E  L  F  L  E  V  E  L  G  P  D  F  I  L  *  L  K  K  E  Q  N  L  R  F  H  L  E  Q  I  I  V  *  L  T  F  P  *  A  I  A  *  T  V  T  Y  P  R  S  M  F  S  H  N  S  T  L  P  L  *  I  A  T  F  H  G  H  M  L  A  I  W  E  D  T  K  T  R  A  L  W  K  F  L  L  L  N  K  V  R  R  T  P  I  G  S  R :   A  L  R  T  L  S  D  N  I  C  G  C  L  R  S  I  M  F  L  N  T  L  Y  L  L  E  I  I  C  I  E  W  I  M  K  S  L  F  K  P  T  G  K  Q  M  L  I  L  P  L  P  H  C  Q  W  T  R  S  V  P  L  H  S  V  S  *  R  L  M  K  K  D  A  L  L  N  L  Q  R  N  R  K  E  S  N  C  K  Q  *  K :   W  I  L  P  F  *  V  L  M  T  R  E  L  K  K  C  L  L  S  P  V  W  V  Y  M  S  L  A  K  T  *  C  *  T  Y  F  V  T  S  F  L  G  P  M  I  L  V  V  K  L  F  L  V  Q  L  H  L  G  *  E :   C  K  L  I  Y  M  M  G  T  G  K  I  L  V  P  L  K  L  S  T  M  P  I  W  A  L  Q  K  S  R  C  Q  I  L   : A  F  T  T  D  Q  P  Q  S  T  P  N  L  D  I  C  H  L  Q  K  C  L  M  P  M  S  Q  I  V  S  L  V  K  V  V  *  S  R :   T  V  R  F  T  I  P  W  L  G  S  D  H  A  Y  Q  R  E  Q  L  *  K  T  H  F  *  W  G  Q  I  T  T  R :   L  M  L  T  G  S  C  W  L  Q  R  A  V  S  Q  L  A  S  A  R  I  V  T  S  K  E  P  L  S  T  R  M  L  V  *  G  T  M  *  R :   S  L  T  K  T  M  F  K  K  R  L  G  K  Q  M  D  T  S  S  R  V  G  L  S  L  S  S  R  M  L  *  F  Q  V  E  S  S  F  K  G  T  R  Y  N  L  V  A  L  Q  D  F  G  *  T  A  M  R  Y  K  R  A  E  V  L  F  S  Y  A  V  E  I  *  C  T  S  C  F  Y  D  T  S  H  Y  L  V  A  V  K  I  I  R  L  K  *  K  *  I  Y  H  Y  T  R  :  L  E  E  K  * </first_frame>
            <second_frame>  S  C  N  *  V  Q  S  H  S  T  T  H  S  L  *  Y  L  *  L  R  A  S  F  V  N  N  G  G  F  H  W  S  L  K  I  F  T  F  F  P  Q  L  H  Q  *  E  K  K  *  F  Y  T  C  N  I  Q  Q  K  S  L  I  F  V  F  S  S  R  R  R  Q  V  D  A  C  I  V  L  T  F  P  R  S  T  I  Q  C  E  K  K  S  I  D  C  V  S  *  G  C  F  *  F  A  E  F  T  D  M  S  G  P  R  C  *  Q   : E  C  F  G  N  Y  S  W  R  W  S  W  D  P  T  L  S  S  N  *  K  K  S  K  T  C  G  S  T  W  S  K  L  S  S  D  *  H  S  R  K  Q  L  L  E  Q  *  H  I  Q  D  L  C  S  H  T  I  Q  L  C  L  S  K  S  P  P  F  T  G  I  C  *  Q  Y  G  R  I  Q  K  R  G  L  C  G  S  S  C  C  S  T  K  S  G  E  P  R  L  V  P   : G  H  C  G  R  C  Q  T  I  S  V  V  V  *  G  A  *  C  S  *  I  P  Y  T  C  W  R  S  S  V  S  N  G  L  *  K  V  Y  S  S  P  Q  G  N  R  C  *  Y  Y  R  C  R  T  A  N  G  R  E  A  C  H  C  I  R  S  H  E  D  *  *  R  R  T  H  Y  *  I  C  R  E  T  A  R  R  A  I  A  S  N  E   : S  G  Y  Y  H  F  R  S  *  *  Q  E  S  *  R  N  A  F  Y  R  Q  Y  G  Y  I  C  H  *  Q  R  R  D  V  K  P  T  S  *  Q  V  S  W  G  Q  *  F  W  *  *  S  Y  S  W  C  N  F  I  W  D  E   : S  A  S  L  F  I  *  W  V  L  G  R  Y  W  Y  H  *  S  F  L  Q  C  Q  F  G  H  Y  K  K  A  G  A  R  F  *  :  L  L  R  P  I  S  P  N  L  H  P  T  S  I  F  A  T  F  K  N  A  *  C  R  C  H  R  *  C  H  W  *  R  L  C  D  Q   : E  L  *  D  S  P  F  R  G  W  A  Q  I  M  H  I  R  G  S  N  Y  R  R  L  T  F  D  G  G  R  L  L  R   : D  *  C  *  Q  E  A  A  G  C  K  G  Q  C  P  N  W  H  R  Q  E  L  S  H  Q  K  S  H  Y  R  Q  E  C  S  Y  R  G  Q  C  E   : D  H  *  Q  R  Q  C  S  R  S  G  *  G  N  R  W  I  L  H  Q  E  W  D  C  H  C  H  Q  G  C  F  D  S  K  W  N  R  H  L  K  E  R  V  I  T  W  L  P  S  K  I  L  A  K  Q  P  *  G  T  N  V  P  K  F  Y  F  P  M  L  *  K  S  S  V  H  L  A  F  M  I  L  L  I  T  W  L  L  *  K  L  F  V  *  N  K  N  K  S  T  I  T  P  D :   *  K  K  N   </second_frame>
            <third_frame>   A  V  I  K  C  N  H  T  L  P  H  T  L  Y  S  I  Y  S  *  E  Q  A  L  L  T  M  A  A  S  I  G  A  L  K  S  S  P  S  S  H  N  C  I  N  E  R  R  N  D  S  T  R  A  I  S  S  R  N  L  S  F  S  S  S  H  L  A  G  D  K  L  M  P  V  S  S  L  R  S  Q  G  V  R  F  N  V  R  R  S  P  L  I  V  S  P  K  A  V  S  D  S  Q  N  S  Q  T  C  L  D  P  D  A  S  R  :  S  V  L  G  I  I  L  G  G  G  A  G  T  R  L  Y  P  L  T  K  K  R  A  K  P  A  V  P  L  G  A  N  Y  R  L  I  D  I  P  V  S  N  C  L  N  S  N  I  S  K  I  Y  V  L  T  Q  F  N  S  A  S  L  N  R  H  L  S  R  A  Y  A  S  N  M  G  G  Y  K  N  E  G  F  V  E  V  L  A  A  Q  Q  S  P  E  N  P  D  W  F  Q  :  G  T  A  D  A  V  R  Q  Y  L  W  L  F  E  E  H  N  V  L  E  Y  L  I  L  A  G  D  H  L  Y  R  M  D  Y  E  K  F  I  Q  A  H  R  E  T  D  A  D  I  T  V  A  A  L  P  M  D  E  K  R  A  T  A  F  G  L  M  K  I  D  E  E  G  R  I  I  E  F  A  E  K  P  Q  G  E  Q  L  Q  A  M  K  :  V  D  T  T  I  L  G  L  D  D  K  R  A  K  E  M  P  F  I  A  S  M  G  I  Y  V  I  S  K  D  V  M  L  N  L  L  R  D  K  F  P  G  A  N  D  F  G  S  E  V  I  P  G  A  T  S  F  G  M  R  :  V  Q  A  Y  L  Y  D  G  Y  W  E  D  I  G  T  I  E  A  F  Y  N  A  N  L  G  I  T  K  K  P  V  P  D  F  S :   F  Y  D  R  S  A  P  I  Y  T  Q  P  R  Y  L  P  P  S  K  M  L  D  A  D  V  T  D  S  V  I  G  E  G  C  V  I  K  :  N  C  K  I  H  H  S  V  V  G  L  R  S  C  I  S  E  G  A  I  I  E  D  S  L  L  M  G  A  D  Y  Y  E  :  T  D  A  D  R  K  L  L  A  A  K  G  S  V  P  I  G  I  G  K  N  C  H  I  K  R  A  I  I  D  K  N  A  R  I  G  D  N  V  K  :  I  I  N  K  D  N  V  Q  E  A  A  R  E  T  D  G  Y  F  I  K  S  G  I  V  T  V  I  K  D  A  L  I  P  S  G  I  V  I  *  R  N  A  L  *  L  G  C  P  P  R  F  W  L  N  S  H  E  V  Q  T  C  R  S  F  I  F  L  C  C  R  N  L  V  Y  I  L  L  L  *  Y  F  S  L  P  G  C  C  K  N  Y  S  S  K  I  K  I  N  L  P  L  H  Q   : T  R  R  K  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19858" stop="19574"/>
                    <exon start="18720" stop="18424"/>
                    <exon start="18138" stop="17869"/>
                    <exon start="17775" stop="17596"/>
                    <exon start="17199" stop="17096"/>
                    <exon start="16990" stop="16879"/>
                    <exon start="16270" stop="16172"/>
                    <exon start="15942" stop="15823"/>
                    <exon start="15689" stop="15573"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1581</number_coding_nucleotides>
                  <number_encoded_amino_acids>527</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQALLTMAASIGALKSSPSSHNCINERRNDSTRAISSRNLSFSSSHLAGDKLMPVSSLRSQGVRFNVRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSFGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="19917" e_stop="19574"/>
            <exon e_start="18720" e_stop="18424"/>
            <exon e_start="18138" e_stop="17869"/>
            <exon e_start="17775" e_stop="17596"/>
            <exon e_start="17199" e_stop="17096"/>
            <exon e_start="16990" e_stop="16879"/>
            <exon e_start="16270" e_stop="16172"/>
            <exon e_start="15942" e_stop="15823"/>
            <exon e_start="15689" e_stop="15388"/>
            <exon e_start="15097" e_stop="15086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.649" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19917" e_stop="19574" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18720" e_stop="18424" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18138" e_stop="17869" e_length="270"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17775" e_stop="17596" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17199" e_stop="17096" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.880" acc_prob="0.649">
            <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16990" e_stop="16879" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16270" e_stop="16172" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15942" e_stop="15823" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15689" e_stop="15388" e_length="302"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="15387" i_stop="15098" i_length="290"/>
          </intron>
          <exon e_serial="10" e_score="0.750">
            <gDNA_exon_boundary e_start="15097" e_stop="15086" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19917" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19903" stop="19662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19901" stop="19574"/>
              <exon start="18720" stop="18700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19898" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19897" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19887" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19886" stop="19574"/>
              <exon start="18720" stop="18551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19884" stop="19574"/>
              <exon start="18720" stop="18475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19881" stop="19574"/>
              <exon start="18720" stop="18577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19880" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19879" stop="19574"/>
              <exon start="18720" stop="18609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19872" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19862" stop="19574"/>
              <exon start="18720" stop="18508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19861" stop="19574"/>
              <exon start="18720" stop="18570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19856" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19855" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19846" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19655" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19612" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18653" stop="18424"/>
              <exon start="18138" stop="17883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18494" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18458" stop="18424"/>
              <exon start="18138" stop="17869"/>
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              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18051" stop="17869"/>
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              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17986" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17931" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17926" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
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              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17895" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="16270" stop="16176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="16990" stop="16879"/>
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              <exon start="15689" stop="15388"/>
              <exon start="15097" stop="15086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16905" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15388"/>
              <exon start="15097" stop="15086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16905" stop="16879"/>
              <exon start="16270" stop="16172"/>
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              <exon start="15689" stop="15388"/>
              <exon start="15097" stop="15086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16223" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15388"/>
              <exon start="15097" stop="15086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15904" stop="15823"/>
              <exon start="15689" stop="15390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTGTAATTAAGTGCAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG : AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG : GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA : GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA : GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG : CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG : AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG : ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG : ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACA : CTAGAAGAAAAA</gDNA_template>
            <first_frame> Q  L  *  L  S  A  I  T  L  Y  H  T  L  S  I  V  S  I  V  E  S  K  L  C  *  Q  W  R  L  P  L  E  P  *  N  L  H  L  L  P  T  I  A  S  M  R  E  E  M  I  L  H  V  Q  Y  P  A  E  I  S  H  F  R  L  L  I  S  P  E  T  S  *  C  L  Y  R  P  Y  V  P  K  E  Y  D  S  M  *  E  E  V  H  *  L  C  L  L  R  L  F  L  I  R  R  I  H  R  H  V  W  T  Q  M  L  A  G :   V  F  W  E  L  F  L  E  V  E  L  G  P  D  F  I  L  *  L  K  K  E  Q  N  L  R  F  H  L  E  Q  I  I  V  *  L  T  F  P  *  A  I  A  *  T  V  T  Y  P  R  S  M  F  S  H  N  S  T  L  P  L  *  I  A  T  F  H  G  H  M  L  A  I  W  E  D  T  K  T  R  A  L  W  K  F  L  L  L  N  K  V  R  R  T  P  I  G  S  R :   A  L  R  T  L  S  D  N  I  C  G  C  L  R  S  I  M  F  L  N  T  L  Y  L  L  E  I  I  C  I  E  W  I  M  K  S  L  F  K  P  T  G  K  Q  M  L  I  L  P  L  P  H  C  Q  W  T  R  S  V  P  L  H  S  V  S  *  R  L  M  K  K  D  A  L  L  N  L  Q  R  N  R  K  E  S  N  C  K  Q  *  K :   W  I  L  P  F  *  V  L  M  T  R  E  L  K  K  C  L  L  S  P  V  W  V  Y  M  S  L  A  K  T  *  C  *  T  Y  F  V  T  S  F  L  G  P  M  I  L  V  V  K  L  F  L  V  Q  L  H  L  G  *  E :   C  K  L  I  Y  M  M  G  T  G  K  I  L  V  P  L  K  L  S  T  M  P  I  W  A  L  Q  K  S  R  C  Q  I  L   : A  F  T  T  D  Q  P  Q  S  T  P  N  L  D  I  C  H  L  Q  K  C  L  M  P  M  S  Q  I  V  S  L  V  K  V  V  *  S  R :   T  V  R  F  T  I  P  W  L  G  S  D  H  A  Y  Q  R  E  Q  L  *  K  T  H  F  *  W  G  Q  I  T  T  R :   L  M  L  T  G  S  C  W  L  Q  R  A  V  S  Q  L  A  S  A  R  I  V  T  S  K  E  P  L  S  T  R  M  L  V  *  G  T  M  *  R :   S  L  T  K  T  M  F  K  K  R  L  G  K  Q  M  D  T  S  S  R  V  G  L  S  L  S  S  R  M  L  *  F  Q  V  E  S  S  F  K  G  T  R  Y  N  L  V  A  L  Q  D  F  G  *  T  A  M  R  Y  K  R  A  E  V  L  F  S  Y  A  V  E  I  *  C  T  S  C  F  Y  D  T  S  H  Y  L  V  A  V  K  I  I  R  L  K  *  K  *  I  Y  H  Y   : T  R  R  K  </first_frame>
            <second_frame>  S  C  N  *  V  Q  S  H  S  T  T  H  S  L  *  Y  L  *  L  R  A  S  F  V  N  N  G  G  F  H  W  S  L  K  I  F  T  F  F  P  Q  L  H  Q  *  E  K  K  *  F  Y  T  C  N  I  Q  Q  K  S  L  I  F  V  F  S  S  R  R  R  Q  V  D  A  C  I  V  L  T  F  P  R  S  T  I  Q  C  E  K  K  S  I  D  C  V  S  *  G  C  F  *  F  A  E  F  T  D  M  S  G  P  R  C  *  Q   : E  C  F  G  N  Y  S  W  R  W  S  W  D  P  T  L  S  S  N  *  K  K  S  K  T  C  G  S  T  W  S  K  L  S  S  D  *  H  S  R  K  Q  L  L  E  Q  *  H  I  Q  D  L  C  S  H  T  I  Q  L  C  L  S  K  S  P  P  F  T  G  I  C  *  Q  Y  G  R  I  Q  K  R  G  L  C  G  S  S  C  C  S  T  K  S  G  E  P  R  L  V  P   : G  H  C  G  R  C  Q  T  I  S  V  V  V  *  G  A  *  C  S  *  I  P  Y  T  C  W  R  S  S  V  S  N  G  L  *  K  V  Y  S  S  P  Q  G  N  R  C  *  Y  Y  R  C  R  T  A  N  G  R  E  A  C  H  C  I  R  S  H  E  D  *  *  R  R  T  H  Y  *  I  C  R  E  T  A  R  R  A  I  A  S  N  E   : S  G  Y  Y  H  F  R  S  *  *  Q  E  S  *  R  N  A  F  Y  R  Q  Y  G  Y  I  C  H  *  Q  R  R  D  V  K  P  T  S  *  Q  V  S  W  G  Q  *  F  W  *  *  S  Y  S  W  C  N  F  I  W  D  E   : S  A  S  L  F  I  *  W  V  L  G  R  Y  W  Y  H  *  S  F  L  Q  C  Q  F  G  H  Y  K  K  A  G  A  R  F  *  :  L  L  R  P  I  S  P  N  L  H  P  T  S  I  F  A  T  F  K  N  A  *  C  R  C  H  R  *  C  H  W  *  R  L  C  D  Q   : E  L  *  D  S  P  F  R  G  W  A  Q  I  M  H  I  R  G  S  N  Y  R  R  L  T  F  D  G  G  R  L  L  R   : D  *  C  *  Q  E  A  A  G  C  K  G  Q  C  P  N  W  H  R  Q  E  L  S  H  Q  K  S  H  Y  R  Q  E  C  S  Y  R  G  Q  C  E   : D  H  *  Q  R  Q  C  S  R  S  G  *  G  N  R  W  I  L  H  Q  E  W  D  C  H  C  H  Q  G  C  F  D  S  K  W  N  R  H  L  K  E  R  V  I  T  W  L  P  S  K  I  L  A  K  Q  P  *  G  T  N  V  P  K  F  Y  F  P  M  L  *  K  S  S  V  H  L  A  F  M  I  L  L  I  T  W  L  L  *  K  L  F  V  *  N  K  N  K  S  T  I  T  :  L  E  E  K </second_frame>
            <third_frame>   A  V  I  K  C  N  H  T  L  P  H  T  L  Y  S  I  Y  S  *  E  Q  A  L  L  T  M  A  A  S  I  G  A  L  K  S  S  P  S  S  H  N  C  I  N  E  R  R  N  D  S  T  R  A  I  S  S  R  N  L  S  F  S  S  S  H  L  A  G  D  K  L  M  P  V  S  S  L  R  S  Q  G  V  R  F  N  V  R  R  S  P  L  I  V  S  P  K  A  V  S  D  S  Q  N  S  Q  T  C  L  D  P  D  A  S  R  :  S  V  L  G  I  I  L  G  G  G  A  G  T  R  L  Y  P  L  T  K  K  R  A  K  P  A  V  P  L  G  A  N  Y  R  L  I  D  I  P  V  S  N  C  L  N  S  N  I  S  K  I  Y  V  L  T  Q  F  N  S  A  S  L  N  R  H  L  S  R  A  Y  A  S  N  M  G  G  Y  K  N  E  G  F  V  E  V  L  A  A  Q  Q  S  P  E  N  P  D  W  F  Q  :  G  T  A  D  A  V  R  Q  Y  L  W  L  F  E  E  H  N  V  L  E  Y  L  I  L  A  G  D  H  L  Y  R  M  D  Y  E  K  F  I  Q  A  H  R  E  T  D  A  D  I  T  V  A  A  L  P  M  D  E  K  R  A  T  A  F  G  L  M  K  I  D  E  E  G  R  I  I  E  F  A  E  K  P  Q  G  E  Q  L  Q  A  M  K  :  V  D  T  T  I  L  G  L  D  D  K  R  A  K  E  M  P  F  I  A  S  M  G  I  Y  V  I  S  K  D  V  M  L  N  L  L  R  D  K  F  P  G  A  N  D  F  G  S  E  V  I  P  G  A  T  S  F  G  M  R  :  V  Q  A  Y  L  Y  D  G  Y  W  E  D  I  G  T  I  E  A  F  Y  N  A  N  L  G  I  T  K  K  P  V  P  D  F  S :   F  Y  D  R  S  A  P  I  Y  T  Q  P  R  Y  L  P  P  S  K  M  L  D  A  D  V  T  D  S  V  I  G  E  G  C  V  I  K  :  N  C  K  I  H  H  S  V  V  G  L  R  S  C  I  S  E  G  A  I  I  E  D  S  L  L  M  G  A  D  Y  Y  E  :  T  D  A  D  R  K  L  L  A  A  K  G  S  V  P  I  G  I  G  K  N  C  H  I  K  R  A  I  I  D  K  N  A  R  I  G  D  N  V  K  :  I  I  N  K  D  N  V  Q  E  A  A  R  E  T  D  G  Y  F  I  K  S  G  I  V  T  V  I  K  D  A  L  I  P  S  G  I  V  I  *  R  N  A  L  *  L  G  C  P  P  R  F  W  L  N  S  H  E  V  Q  T  C  R  S  F  I  F  L  C  C  R  N  L  V  Y  I  L  L  L  *  Y  F  S  L  P  G  C  C  K  N  Y  S  S  K  I  K  I  N  L  P  L  H :   *  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19858" stop="19574"/>
                    <exon start="18720" stop="18424"/>
                    <exon start="18138" stop="17869"/>
                    <exon start="17775" stop="17596"/>
                    <exon start="17199" stop="17096"/>
                    <exon start="16990" stop="16879"/>
                    <exon start="16270" stop="16172"/>
                    <exon start="15942" stop="15823"/>
                    <exon start="15689" stop="15573"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1581</number_coding_nucleotides>
                  <number_encoded_amino_acids>527</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQALLTMAASIGALKSSPSSHNCINERRNDSTRAISSRNLSFSSSHLAGDKLMPVSSLRSQGVRFNVRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSFGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="19917" e_stop="19574"/>
            <exon e_start="18720" e_stop="18424"/>
            <exon e_start="18138" e_stop="17869"/>
            <exon e_start="17775" e_stop="17596"/>
            <exon e_start="17199" e_stop="17096"/>
            <exon e_start="16990" e_stop="16879"/>
            <exon e_start="16270" e_stop="16172"/>
            <exon e_start="15942" e_stop="15823"/>
            <exon e_start="15689" e_stop="15387"/>
            <exon e_start="15097" e_stop="15085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.649" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19917" e_stop="19574" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18720" e_stop="18424" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18138" e_stop="17869" e_length="270"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17775" e_stop="17596" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17199" e_stop="17096" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.880" acc_prob="0.649">
            <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16990" e_stop="16879" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16270" e_stop="16172" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15942" e_stop="15823" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15689" e_stop="15387" e_length="303"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="15386" i_stop="15098" i_length="289"/>
          </intron>
          <exon e_serial="10" e_score="0.692">
            <gDNA_exon_boundary e_start="15097" e_stop="15085" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19917" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19903" stop="19662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19901" stop="19574"/>
              <exon start="18720" stop="18700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19898" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19897" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19887" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19886" stop="19574"/>
              <exon start="18720" stop="18551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19884" stop="19574"/>
              <exon start="18720" stop="18475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19881" stop="19574"/>
              <exon start="18720" stop="18577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19880" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19879" stop="19574"/>
              <exon start="18720" stop="18609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19872" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19862" stop="19574"/>
              <exon start="18720" stop="18508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19861" stop="19574"/>
              <exon start="18720" stop="18570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19856" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19855" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19846" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19655" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19612" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18653" stop="18424"/>
              <exon start="18138" stop="17883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18494" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18458" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18051" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17986" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17931" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17926" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17895" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17891" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16180" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15387"/>
              <exon start="15097" stop="15085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15904" stop="15823"/>
              <exon start="15689" stop="15390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTGTAATTAAGTGCAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG : AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG : GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA : GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA : GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG : CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG : AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG : ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG : ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCATTACAC : CTAGAAGAAAAAT</gDNA_template>
            <first_frame> Q  L  *  L  S  A  I  T  L  Y  H  T  L  S  I  V  S  I  V  E  S  K  L  C  *  Q  W  R  L  P  L  E  P  *  N  L  H  L  L  P  T  I  A  S  M  R  E  E  M  I  L  H  V  Q  Y  P  A  E  I  S  H  F  R  L  L  I  S  P  E  T  S  *  C  L  Y  R  P  Y  V  P  K  E  Y  D  S  M  *  E  E  V  H  *  L  C  L  L  R  L  F  L  I  R  R  I  H  R  H  V  W  T  Q  M  L  A  G :   V  F  W  E  L  F  L  E  V  E  L  G  P  D  F  I  L  *  L  K  K  E  Q  N  L  R  F  H  L  E  Q  I  I  V  *  L  T  F  P  *  A  I  A  *  T  V  T  Y  P  R  S  M  F  S  H  N  S  T  L  P  L  *  I  A  T  F  H  G  H  M  L  A  I  W  E  D  T  K  T  R  A  L  W  K  F  L  L  L  N  K  V  R  R  T  P  I  G  S  R :   A  L  R  T  L  S  D  N  I  C  G  C  L  R  S  I  M  F  L  N  T  L  Y  L  L  E  I  I  C  I  E  W  I  M  K  S  L  F  K  P  T  G  K  Q  M  L  I  L  P  L  P  H  C  Q  W  T  R  S  V  P  L  H  S  V  S  *  R  L  M  K  K  D  A  L  L  N  L  Q  R  N  R  K  E  S  N  C  K  Q  *  K :   W  I  L  P  F  *  V  L  M  T  R  E  L  K  K  C  L  L  S  P  V  W  V  Y  M  S  L  A  K  T  *  C  *  T  Y  F  V  T  S  F  L  G  P  M  I  L  V  V  K  L  F  L  V  Q  L  H  L  G  *  E :   C  K  L  I  Y  M  M  G  T  G  K  I  L  V  P  L  K  L  S  T  M  P  I  W  A  L  Q  K  S  R  C  Q  I  L   : A  F  T  T  D  Q  P  Q  S  T  P  N  L  D  I  C  H  L  Q  K  C  L  M  P  M  S  Q  I  V  S  L  V  K  V  V  *  S  R :   T  V  R  F  T  I  P  W  L  G  S  D  H  A  Y  Q  R  E  Q  L  *  K  T  H  F  *  W  G  Q  I  T  T  R :   L  M  L  T  G  S  C  W  L  Q  R  A  V  S  Q  L  A  S  A  R  I  V  T  S  K  E  P  L  S  T  R  M  L  V  *  G  T  M  *  R :   S  L  T  K  T  M  F  K  K  R  L  G  K  Q  M  D  T  S  S  R  V  G  L  S  L  S  S  R  M  L  *  F  Q  V  E  S  S  F  K  G  T  R  Y  N  L  V  A  L  Q  D  F  G  *  T  A  M  R  Y  K  R  A  E  V  L  F  S  Y  A  V  E  I  *  C  T  S  C  F  Y  D  T  S  H  Y  L  V  A  V  K  I  I  R  L  K  *  K  *  I  Y  H  Y  T :   *  K  K  N </first_frame>
            <second_frame>  S  C  N  *  V  Q  S  H  S  T  T  H  S  L  *  Y  L  *  L  R  A  S  F  V  N  N  G  G  F  H  W  S  L  K  I  F  T  F  F  P  Q  L  H  Q  *  E  K  K  *  F  Y  T  C  N  I  Q  Q  K  S  L  I  F  V  F  S  S  R  R  R  Q  V  D  A  C  I  V  L  T  F  P  R  S  T  I  Q  C  E  K  K  S  I  D  C  V  S  *  G  C  F  *  F  A  E  F  T  D  M  S  G  P  R  C  *  Q   : E  C  F  G  N  Y  S  W  R  W  S  W  D  P  T  L  S  S  N  *  K  K  S  K  T  C  G  S  T  W  S  K  L  S  S  D  *  H  S  R  K  Q  L  L  E  Q  *  H  I  Q  D  L  C  S  H  T  I  Q  L  C  L  S  K  S  P  P  F  T  G  I  C  *  Q  Y  G  R  I  Q  K  R  G  L  C  G  S  S  C  C  S  T  K  S  G  E  P  R  L  V  P   : G  H  C  G  R  C  Q  T  I  S  V  V  V  *  G  A  *  C  S  *  I  P  Y  T  C  W  R  S  S  V  S  N  G  L  *  K  V  Y  S  S  P  Q  G  N  R  C  *  Y  Y  R  C  R  T  A  N  G  R  E  A  C  H  C  I  R  S  H  E  D  *  *  R  R  T  H  Y  *  I  C  R  E  T  A  R  R  A  I  A  S  N  E   : S  G  Y  Y  H  F  R  S  *  *  Q  E  S  *  R  N  A  F  Y  R  Q  Y  G  Y  I  C  H  *  Q  R  R  D  V  K  P  T  S  *  Q  V  S  W  G  Q  *  F  W  *  *  S  Y  S  W  C  N  F  I  W  D  E   : S  A  S  L  F  I  *  W  V  L  G  R  Y  W  Y  H  *  S  F  L  Q  C  Q  F  G  H  Y  K  K  A  G  A  R  F  *  :  L  L  R  P  I  S  P  N  L  H  P  T  S  I  F  A  T  F  K  N  A  *  C  R  C  H  R  *  C  H  W  *  R  L  C  D  Q   : E  L  *  D  S  P  F  R  G  W  A  Q  I  M  H  I  R  G  S  N  Y  R  R  L  T  F  D  G  G  R  L  L  R   : D  *  C  *  Q  E  A  A  G  C  K  G  Q  C  P  N  W  H  R  Q  E  L  S  H  Q  K  S  H  Y  R  Q  E  C  S  Y  R  G  Q  C  E   : D  H  *  Q  R  Q  C  S  R  S  G  *  G  N  R  W  I  L  H  Q  E  W  D  C  H  C  H  Q  G  C  F  D  S  K  W  N  R  H  L  K  E  R  V  I  T  W  L  P  S  K  I  L  A  K  Q  P  *  G  T  N  V  P  K  F  Y  F  P  M  L  *  K  S  S  V  H  L  A  F  M  I  L  L  I  T  W  L  L  *  K  L  F  V  *  N  K  N  K  S  T  I  T   : P  R  R  K   </second_frame>
            <third_frame>   A  V  I  K  C  N  H  T  L  P  H  T  L  Y  S  I  Y  S  *  E  Q  A  L  L  T  M  A  A  S  I  G  A  L  K  S  S  P  S  S  H  N  C  I  N  E  R  R  N  D  S  T  R  A  I  S  S  R  N  L  S  F  S  S  S  H  L  A  G  D  K  L  M  P  V  S  S  L  R  S  Q  G  V  R  F  N  V  R  R  S  P  L  I  V  S  P  K  A  V  S  D  S  Q  N  S  Q  T  C  L  D  P  D  A  S  R  :  S  V  L  G  I  I  L  G  G  G  A  G  T  R  L  Y  P  L  T  K  K  R  A  K  P  A  V  P  L  G  A  N  Y  R  L  I  D  I  P  V  S  N  C  L  N  S  N  I  S  K  I  Y  V  L  T  Q  F  N  S  A  S  L  N  R  H  L  S  R  A  Y  A  S  N  M  G  G  Y  K  N  E  G  F  V  E  V  L  A  A  Q  Q  S  P  E  N  P  D  W  F  Q  :  G  T  A  D  A  V  R  Q  Y  L  W  L  F  E  E  H  N  V  L  E  Y  L  I  L  A  G  D  H  L  Y  R  M  D  Y  E  K  F  I  Q  A  H  R  E  T  D  A  D  I  T  V  A  A  L  P  M  D  E  K  R  A  T  A  F  G  L  M  K  I  D  E  E  G  R  I  I  E  F  A  E  K  P  Q  G  E  Q  L  Q  A  M  K  :  V  D  T  T  I  L  G  L  D  D  K  R  A  K  E  M  P  F  I  A  S  M  G  I  Y  V  I  S  K  D  V  M  L  N  L  L  R  D  K  F  P  G  A  N  D  F  G  S  E  V  I  P  G  A  T  S  F  G  M  R  :  V  Q  A  Y  L  Y  D  G  Y  W  E  D  I  G  T  I  E  A  F  Y  N  A  N  L  G  I  T  K  K  P  V  P  D  F  S :   F  Y  D  R  S  A  P  I  Y  T  Q  P  R  Y  L  P  P  S  K  M  L  D  A  D  V  T  D  S  V  I  G  E  G  C  V  I  K  :  N  C  K  I  H  H  S  V  V  G  L  R  S  C  I  S  E  G  A  I  I  E  D  S  L  L  M  G  A  D  Y  Y  E  :  T  D  A  D  R  K  L  L  A  A  K  G  S  V  P  I  G  I  G  K  N  C  H  I  K  R  A  I  I  D  K  N  A  R  I  G  D  N  V  K  :  I  I  N  K  D  N  V  Q  E  A  A  R  E  T  D  G  Y  F  I  K  S  G  I  V  T  V  I  K  D  A  L  I  P  S  G  I  V  I  *  R  N  A  L  *  L  G  C  P  P  R  F  W  L  N  S  H  E  V  Q  T  C  R  S  F  I  F  L  C  C  R  N  L  V  Y  I  L  L  L  *  Y  F  S  L  P  G  C  C  K  N  Y  S  S  K  I  K  I  N  L  P  L  H  :  L  E  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19858" stop="19574"/>
                    <exon start="18720" stop="18424"/>
                    <exon start="18138" stop="17869"/>
                    <exon start="17775" stop="17596"/>
                    <exon start="17199" stop="17096"/>
                    <exon start="16990" stop="16879"/>
                    <exon start="16270" stop="16172"/>
                    <exon start="15942" stop="15823"/>
                    <exon start="15689" stop="15573"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1581</number_coding_nucleotides>
                  <number_encoded_amino_acids>527</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQALLTMAASIGALKSSPSSHNCINERRNDSTRAISSRNLSFSSSHLAGDKLMPVSSLRSQGVRFNVRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSFGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="19917" e_stop="19574"/>
            <exon e_start="18720" e_stop="18424"/>
            <exon e_start="18138" e_stop="17869"/>
            <exon e_start="17775" e_stop="17596"/>
            <exon e_start="17199" e_stop="17096"/>
            <exon e_start="16990" e_stop="16879"/>
            <exon e_start="16270" e_stop="16172"/>
            <exon e_start="15942" e_stop="15823"/>
            <exon e_start="15689" e_stop="15393"/>
            <exon e_start="15097" e_stop="15083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.649" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19917" e_stop="19574" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19573" i_stop="18721" i_length="853"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18720" e_stop="18424" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18423" i_stop="18139" i_length="285"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18138" e_stop="17869" e_length="270"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17868" i_stop="17776" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17775" e_stop="17596" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="17595" i_stop="17200" i_length="396"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17199" e_stop="17096" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.880" acc_prob="0.649">
            <gDNA_intron_boundary i_start="17095" i_stop="16991" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16990" e_stop="16879" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="16878" i_stop="16271" i_length="608"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16270" e_stop="16172" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16171" i_stop="15943" i_length="229"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15942" e_stop="15823" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15822" i_stop="15690" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15689" e_stop="15393" e_length="297"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="15392" i_stop="15098" i_length="295"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="15097" e_stop="15083" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19917" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19903" stop="19662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19901" stop="19574"/>
              <exon start="18720" stop="18700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19898" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19897" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19889" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19887" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19886" stop="19574"/>
              <exon start="18720" stop="18551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19885" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19884" stop="19574"/>
              <exon start="18720" stop="18475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19881" stop="19574"/>
              <exon start="18720" stop="18577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19880" stop="19574"/>
              <exon start="18720" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19879" stop="19574"/>
              <exon start="18720" stop="18609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19876" stop="19574"/>
              <exon start="18720" stop="18585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19872" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19867" stop="19574"/>
              <exon start="18720" stop="18576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19862" stop="19574"/>
              <exon start="18720" stop="18508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19861" stop="19574"/>
              <exon start="18720" stop="18570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19856" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19855" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19846" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="18110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19655" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19612" stop="19574"/>
              <exon start="18720" stop="18424"/>
              <exon start="18138" stop="17993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18653" stop="18424"/>
              <exon start="18138" stop="17883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18494" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18478" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18458" stop="18424"/>
              <exon start="18138" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18051" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17986" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17931" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17926" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17895" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17891" stop="17869"/>
              <exon start="17775" stop="17596"/>
              <exon start="17199" stop="17096"/>
              <exon start="16990" stop="16879"/>
              <exon start="16270" stop="16176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16915" stop="16879"/>
              <exon start="16270" stop="16172"/>
              <exon start="15942" stop="15823"/>
              <exon start="15689" stop="15393"/>
              <exon start="15097" stop="15083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTGTAATTAAGTGCAATCACACTCTACCACACACTCTCTATAGTATCTATAGTTGAGAGCAAGCTTTGTTAACAATGGCGGCTTCCATTGGAGCCTTAAAATCTTCACCTTCTTCCCACAATTGCATCAATGAGAGAAGAAATGATTCTACACGTGCAATATCCAGCAGAAATCTCTCATTTTCGTCTTCTCATCTCGCCGGAGACAAGTTGATGCCTGTATCGTCCTTACGTTCCCAAGGAGTACGATTCAATGTGAGAAGAAGTCCATTGATTGTGTCTCCTAAGGCTGTTTCTGATTCGCAGAATTCACAGACATGTCTGGACCCAGATGCTAGCAGG : AGTGTTTTGGGAATTATTCTTGGAGGTGGAGCTGGGACCCGACTTTATCCTCTAACTAAAAAAAGAGCAAAACCTGCGGTTCCACTTGGAGCAAATTATCGTCTGATTGACATTCCCGTAAGCAATTGCTTGAACAGTAACATATCCAAGATCTATGTTCTCACACAATTCAACTCTGCCTCTCTAAATCGCCACCTTTCACGGGCATATGCTAGCAATATGGGAGGATACAAAAACGAGGGCTTTGTGGAAGTTCTTGCTGCTCAACAAAGTCCGGAGAACCCCGATTGGTTCCAG : GGCACTGCGGACGCTGTCAGACAATATCTGTGGTTGTTTGAGGAGCATAATGTTCTTGAATACCTTATACTTGCTGGAGATCATCTGTATCGAATGGATTATGAAAAGTTTATTCAAGCCCACAGGGAAACAGATGCTGATATTACCGTTGCCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAAGGAGAGCAATTGCAAGCAATGAAA : GTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTATATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTTCATTTGGGATGAGA : GTGCAAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACAAAAAAGCCGGTGCCAGATTTTAG : CTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGATGTCACAGATAGTGTCATTGGTGAAGGTTGTGTGATCAAG : AACTGTAAGATTCACCATTCCGTGGTTGGGCTCAGATCATGCATATCAGAGGGAGCAATTATAGAAGACTCACTTTTGATGGGGGCAGATTACTACGAG : ACTGATGCTGACAGGAAGCTGCTGGCTGCAAAGGGCAGTGTCCCAATTGGCATCGGCAAGAATTGTCACATCAAAAGAGCCATTATCGACAAGAATGCTCGTATAGGGGACAATGTGAAG : ATCATTAACAAAGACAATGTTCAAGAAGCGGCTAGGGAAACAGATGGATACTTCATCAAGAGTGGGATTGTCACTGTCATCAAGGATGCTTTGATTCCAAGTGGAATCGTCATTTAAAGGAACGCGTTATAACTTGGTTGCCCTCCAAGATTTTGGCTAAACAGCCATGAGGTACAAACGTGCCGAAGTTTTATTTTCCTATGCTGTAGAAATCTAGTGTACATCTTGCTTTTATGATACTTCTCATTACCTGGTTGCTGTAAAAATTATTCGTCTAAAATAAAAATAAATCTACCA : CTAGAAGAAAAATGA</gDNA_template>
            <first_frame> Q  L  *  L  S  A  I  T  L  Y  H  T  L  S  I  V  S  I  V  E  S  K  L  C  *  Q  W  R  L  P  L  E  P  *  N  L  H  L  L  P  T  I  A  S  M  R  E  E  M  I  L  H  V  Q  Y  P  A  E  I  S  H  F  R  L  L  I  S  P  E  T  S  *  C  L  Y  R  P  Y  V  P  K  E  Y  D  S  M  *  E  E  V  H  *  L  C  L  L  R  L  F  L  I  R  R  I  H  R  H  V  W  T  Q  M  L  A  G :   V  F  W  E  L  F  L  E  V  E  L  G  P  D  F  I  L  *  L  K  K  E  Q  N  L  R  F  H  L  E  Q  I  I  V  *  L  T  F  P  *  A  I  A  *  T  V  T  Y  P  R  S  M  F  S  H  N  S  T  L  P  L  *  I  A  T  F  H  G  H  M  L  A  I  W  E  D  T  K  T  R  A  L  W  K  F  L  L  L  N  K  V  R  R  T  P  I  G  S  R :   A  L  R  T  L  S  D  N  I  C  G  C  L  R  S  I  M  F  L  N  T  L  Y  L  L  E  I  I  C  I  E  W  I  M  K  S  L  F  K  P  T  G  K  Q  M  L  I  L  P  L  P  H  C  Q  W  T  R  S  V  P  L  H  S  V  S  *  R  L  M  K  K  D  A  L  L  N  L  Q  R  N  R  K  E  S  N  C  K  Q  *  K :   W  I  L  P  F  *  V  L  M  T  R  E  L  K  K  C  L  L  S  P  V  W  V  Y  M  S  L  A  K  T  *  C  *  T  Y  F  V  T  S  F  L  G  P  M  I  L  V  V  K  L  F  L  V  Q  L  H  L  G  *  E :   C  K  L  I  Y  M  M  G  T  G  K  I  L  V  P  L  K  L  S  T  M  P  I  W  A  L  Q  K  S  R  C  Q  I  L   : A  F  T  T  D  Q  P  Q  S  T  P  N  L  D  I  C  H  L  Q  K  C  L  M  P  M  S  Q  I  V  S  L  V  K  V  V  *  S  R :   T  V  R  F  T  I  P  W  L  G  S  D  H  A  Y  Q  R  E  Q  L  *  K  T  H  F  *  W  G  Q  I  T  T  R :   L  M  L  T  G  S  C  W  L  Q  R  A  V  S  Q  L  A  S  A  R  I  V  T  S  K  E  P  L  S  T  R  M  L  V  *  G  T  M  *  R :   S  L  T  K  T  M  F  K  K  R  L  G  K  Q  M  D  T  S  S  R  V  G  L  S  L  S  S  R  M  L  *  F  Q  V  E  S  S  F  K  G  T  R  Y  N  L  V  A  L  Q  D  F  G  *  T  A  M  R  Y  K  R  A  E  V  L  F  S  Y  A  V  E  I  *  C  T  S  C  F  Y  D  T  S  H  Y  L  V  A  V  K  I  I  R  L  K  *  K  *  I  Y  H :   *  K  K  N   </first_frame>
            <second_frame>  S  C  N  *  V  Q  S  H  S  T  T  H  S  L  *  Y  L  *  L  R  A  S  F  V  N  N  G  G  F  H  W  S  L  K  I  F  T  F  F  P  Q  L  H  Q  *  E  K  K  *  F  Y  T  C  N  I  Q  Q  K  S  L  I  F  V  F  S  S  R  R  R  Q  V  D  A  C  I  V  L  T  F  P  R  S  T  I  Q  C  E  K  K  S  I  D  C  V  S  *  G  C  F  *  F  A  E  F  T  D  M  S  G  P  R  C  *  Q   : E  C  F  G  N  Y  S  W  R  W  S  W  D  P  T  L  S  S  N  *  K  K  S  K  T  C  G  S  T  W  S  K  L  S  S  D  *  H  S  R  K  Q  L  L  E  Q  *  H  I  Q  D  L  C  S  H  T  I  Q  L  C  L  S  K  S  P  P  F  T  G  I  C  *  Q  Y  G  R  I  Q  K  R  G  L  C  G  S  S  C  C  S  T  K  S  G  E  P  R  L  V  P   : G  H  C  G  R  C  Q  T  I  S  V  V  V  *  G  A  *  C  S  *  I  P  Y  T  C  W  R  S  S  V  S  N  G  L  *  K  V  Y  S  S  P  Q  G  N  R  C  *  Y  Y  R  C  R  T  A  N  G  R  E  A  C  H  C  I  R  S  H  E  D  *  *  R  R  T  H  Y  *  I  C  R  E  T  A  R  R  A  I  A  S  N  E   : S  G  Y  Y  H  F  R  S  *  *  Q  E  S  *  R  N  A  F  Y  R  Q  Y  G  Y  I  C  H  *  Q  R  R  D  V  K  P  T  S  *  Q  V  S  W  G  Q  *  F  W  *  *  S  Y  S  W  C  N  F  I  W  D  E   : S  A  S  L  F  I  *  W  V  L  G  R  Y  W  Y  H  *  S  F  L  Q  C  Q  F  G  H  Y  K  K  A  G  A  R  F  *  :  L  L  R  P  I  S  P  N  L  H  P  T  S  I  F  A  T  F  K  N  A  *  C  R  C  H  R  *  C  H  W  *  R  L  C  D  Q   : E  L  *  D  S  P  F  R  G  W  A  Q  I  M  H  I  R  G  S  N  Y  R  R  L  T  F  D  G  G  R  L  L  R   : D  *  C  *  Q  E  A  A  G  C  K  G  Q  C  P  N  W  H  R  Q  E  L  S  H  Q  K  S  H  Y  R  Q  E  C  S  Y  R  G  Q  C  E   : D  H  *  Q  R  Q  C  S  R  S  G  *  G  N  R  W  I  L  H  Q  E  W  D  C  H  C  H  Q  G  C  F  D  S  K  W  N  R  H  L  K  E  R  V  I  T  W  L  P  S  K  I  L  A  K  Q  P  *  G  T  N  V  P  K  F  Y  F  P  M  L  *  K  S  S  V  H  L  A  F  M  I  L  L  I  T  W  L  L  *  K  L  F  V  *  N  K  N  K  S  T   : T  R  R  K  M  </second_frame>
            <third_frame>   A  V  I  K  C  N  H  T  L  P  H  T  L  Y  S  I  Y  S  *  E  Q  A  L  L  T  M  A  A  S  I  G  A  L  K  S  S  P  S  S  H  N  C  I  N  E  R  R  N  D  S  T  R  A  I  S  S  R  N  L  S  F  S  S  S  H  L  A  G  D  K  L  M  P  V  S  S  L  R  S  Q  G  V  R  F  N  V  R  R  S  P  L  I  V  S  P  K  A  V  S  D  S  Q  N  S  Q  T  C  L  D  P  D  A  S  R  :  S  V  L  G  I  I  L  G  G  G  A  G  T  R  L  Y  P  L  T  K  K  R  A  K  P  A  V  P  L  G  A  N  Y  R  L  I  D  I  P  V  S  N  C  L  N  S  N  I  S  K  I  Y  V  L  T  Q  F  N  S  A  S  L  N  R  H  L  S  R  A  Y  A  S  N  M  G  G  Y  K  N  E  G  F  V  E  V  L  A  A  Q  Q  S  P  E  N  P  D  W  F  Q  :  G  T  A  D  A  V  R  Q  Y  L  W  L  F  E  E  H  N  V  L  E  Y  L  I  L  A  G  D  H  L  Y  R  M  D  Y  E  K  F  I  Q  A  H  R  E  T  D  A  D  I  T  V  A  A  L  P  M  D  E  K  R  A  T  A  F  G  L  M  K  I  D  E  E  G  R  I  I  E  F  A  E  K  P  Q  G  E  Q  L  Q  A  M  K  :  V  D  T  T  I  L  G  L  D  D  K  R  A  K  E  M  P  F  I  A  S  M  G  I  Y  V  I  S  K  D  V  M  L  N  L  L  R  D  K  F  P  G  A  N  D  F  G  S  E  V  I  P  G  A  T  S  F  G  M  R  :  V  Q  A  Y  L  Y  D  G  Y  W  E  D  I  G  T  I  E  A  F  Y  N  A  N  L  G  I  T  K  K  P  V  P  D  F  S :   F  Y  D  R  S  A  P  I  Y  T  Q  P  R  Y  L  P  P  S  K  M  L  D  A  D  V  T  D  S  V  I  G  E  G  C  V  I  K  :  N  C  K  I  H  H  S  V  V  G  L  R  S  C  I  S  E  G  A  I  I  E  D  S  L  L  M  G  A  D  Y  Y  E  :  T  D  A  D  R  K  L  L  A  A  K  G  S  V  P  I  G  I  G  K  N  C  H  I  K  R  A  I  I  D  K  N  A  R  I  G  D  N  V  K  :  I  I  N  K  D  N  V  Q  E  A  A  R  E  T  D  G  Y  F  I  K  S  G  I  V  T  V  I  K  D  A  L  I  P  S  G  I  V  I  *  R  N  A  L  *  L  G  C  P  P  R  F  W  L  N  S  H  E  V  Q  T  C  R  S  F  I  F  L  C  C  R  N  L  V  Y  I  L  L  L  *  Y  F  S  L  P  G  C  C  K  N  Y  S  S  K  I  K  I  N  L  P  :  L  E  E  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19858" stop="19574"/>
                    <exon start="18720" stop="18424"/>
                    <exon start="18138" stop="17869"/>
                    <exon start="17775" stop="17596"/>
                    <exon start="17199" stop="17096"/>
                    <exon start="16990" stop="16879"/>
                    <exon start="16270" stop="16172"/>
                    <exon start="15942" stop="15823"/>
                    <exon start="15689" stop="15573"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1581</number_coding_nucleotides>
                  <number_encoded_amino_acids>527</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQALLTMAASIGALKSSPSSHNCINERRNDSTRAISSRNLSFSSSHLAGDKLMPVSSLRSQGVRFNVRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSFGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="25275" PGL_stop="21004"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25275" e_stop="24907"/>
            <exon e_start="23914" e_stop="23775"/>
            <exon e_start="23528" e_stop="23446"/>
            <exon e_start="22898" e_stop="22694"/>
            <exon e_start="22574" e_stop="22506"/>
            <exon e_start="21272" e_stop="21004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.510" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25275" e_stop="24907" e_length="369"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="24906" i_stop="23915" i_length="992"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23914" e_stop="23775" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.933">
            <gDNA_intron_boundary i_start="23774" i_stop="23529" i_length="246"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23528" e_stop="23446" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.510" acc_prob="0.931">
            <gDNA_intron_boundary i_start="23445" i_stop="22899" i_length="547"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22898" e_stop="22694" e_length="205"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="22693" i_stop="22575" i_length="119"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22574" e_stop="22506" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22505" i_stop="21273" i_length="1233"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="21272" e_stop="21004" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25275" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23446"/>
              <exon start="22898" stop="22694"/>
              <exon start="22574" stop="22506"/>
              <exon start="21272" stop="21034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25255" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23446"/>
              <exon start="22898" stop="22694"/>
              <exon start="22574" stop="22558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25255" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23446"/>
              <exon start="22898" stop="22709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25255" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25255" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25253" stop="24907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25215" stop="25016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25187" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25186" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23446"/>
              <exon start="22898" stop="22694"/>
              <exon start="22574" stop="22506"/>
              <exon start="21272" stop="21235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25169" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23446"/>
              <exon start="22898" stop="22806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25161" stop="24907"/>
              <exon start="23914" stop="23790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25156" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23446"/>
              <exon start="22898" stop="22694"/>
              <exon start="22574" stop="22506"/>
              <exon start="21272" stop="21140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25148" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25148" stop="24907"/>
              <exon start="23914" stop="23841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25147" stop="24907"/>
              <exon start="23914" stop="23894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25123" stop="24907"/>
              <exon start="23914" stop="23871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25077" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23446"/>
              <exon start="22898" stop="22694"/>
              <exon start="22574" stop="22506"/>
              <exon start="21272" stop="21096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25046" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23446"/>
              <exon start="22898" stop="22793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24952" stop="24907"/>
              <exon start="23914" stop="23775"/>
              <exon start="23528" stop="23446"/>
              <exon start="22898" stop="22694"/>
              <exon start="22574" stop="22506"/>
              <exon start="21272" stop="21249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22887" stop="22694"/>
              <exon start="22574" stop="22506"/>
              <exon start="21272" stop="21004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22767" stop="22694"/>
              <exon start="22574" stop="22506"/>
              <exon start="21272" stop="21171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22756" stop="22694"/>
              <exon start="22574" stop="22506"/>
              <exon start="21272" stop="21024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTACCCGACCCGTTTAACAGCTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCG : GAGTTGGAAAATCATGTCTTCTGTTGCAATTTACTGACAAACGATTTCAACCAGTTCATGATTTGACCATCGGTGTTGAATTTGGGGCTAGAATGATCACAATAGACAACAAGCCCATTAAACTACAAATCTGGGATACA : GCGGGTCAAGAATCATTCAGATCTATCACGAGGTCATACTACAGAGGTGCTGCTGGGGCACTACTTGTTTATGATATTACAAG : GAGGGAAACATTTAATCACCTAGCTAGTTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAACATGACCATAATGCTGATTGGAAACAAGTGTGATCTGGCTCACAGAAGGGCTGTAAGCACCGAGGAAGGCGAACAATTTGCCAAGGAAAATGGGTTGATATTTATGGAGGCCTCTGCCAAAACAGCTCAGAATGTTGAAGAG : GCTTTTATCAGAACAGCCTCAACAATTTATAAGAAAATACAGGATGGAGTGTTTGATGTATCAAATGAG : TCCTATGGAATAAAAGTTGGATATGGAGGTATTCCGGGGCCTTCAGGTGGAAGAGACGGAGCTGCTTCACAAGGAGGGGGTTGTTGTACTTGAAAATGGACATTTATTGTTCGCAAACCTATTATGTTCCTATGGTTGTTTATTTGTAGTTTGGTATTGCTCTTTAGTTTATTCCTTTTAATGAAAGGATAATATATGTGCAAAAATAAGTAAATTTGGTACATAAAAGACATTCTTTTTCTTTGTGCATTTTCTGTTTATTGAGTTGT</gDNA_template>
            <first_frame> D  Y  P  T  R  L  T  A  L  L  E  S  C  L  L  F  E  G  K  S  F  D  T  P  K  L  A  K  *  F  N  N  L  R  I  F  K  R  L  C  A  S  V  N  S  P  V  V  S  S  F  S  L  R  I  T  D  R  E  E  E  E  E  G  Y  T  D  T  A  I  I  R  D  L  Y  I  I  F  S  G  K  I  Y  I  Y  N  Y  C  F  L  Q  L  R  R  Y  S  A  I  T  L  S  P  E  F  A  S  Q  T  C  L  T  P  I  S  S  S  I  S  S  S  A  I  P  :  E  L  E  N  H  V  F  C  C  N  L  L  T  N  D  F  N  Q  F  M  I  *  P  S  V  L  N  L  G  L  E  *  S  Q  *  T  T  S  P  L  N  Y  K  S  G  I  Q :   R  V  K  N  H  S  D  L  S  R  G  H  T  T  E  V  L  L  G  H  Y  L  F  M  I  L  Q   : G  G  K  H  L  I  T  *  L  V  G  *  K  M  Q  G  S  M  Q  M  Q  T  *  P  *  C  *  L  E  T  S  V  I  W  L  T  E  G  L  *  A  P  R  K  A  N  N  L  P  R  K  M  G  *  Y  L  W  R  P  L  P  K  Q  L  R  M  L  K  R :   L  L  S  E  Q  P  Q  Q  F  I  R  K  Y  R  M  E  C  L  M  Y  Q  M  S :   P  M  E  *  K  L  D  M  E  V  F  R  G  L  Q  V  E  E  T  E  L  L  H  K  E  G  V  V  V  L  E  N  G  H  L  L  F  A  N  L  L  C  S  Y  G  C  L  F  V  V  W  Y  C  S  L  V  Y  S  F  *  *  K  D  N  I  C  A  K  I  S  K  F  G  T  *  K  T  F  F  F  F  V  H  F  L  F  I  E  L  </first_frame>
            <second_frame>  I  T  R  P  V  *  Q  L  C  W  S  R  A  F  S  S  K  E  N  P  S  T  R  Q  N  W  Q  S  S  S  I  I  Y  V  Y  S  N  A  F  A  P  L  *  I  L  P  S  F  L  L  S  L  S  A  S  P  T  E  K  K  K  R  K  D  I  P  I  Q  Q  L  L  G  I  C  I  L  F  F  Q  V  K  Y  T  F  T  T  I  V  F  Y  S  S  D  D  I  Q  P  L  L  F  L  R  N  L  L  L  K  H  V  L  R  L  S  L  Q  V  Y  H  H  R  R  Y  R :   S  W  K  I  M  S  S  V  A  I  Y  *  Q  T  I  S  T  S  S  *  F  D  H  R  C  *  I  W  G  *  N  D  H  N  R  Q  Q  A  H  *  T  T  N  L  G  Y   : S  G  S  R  I  I  Q  I  Y  H  E  V  I  L  Q  R  C  C  W  G  T  T  C  L  *  Y  Y  K  :  E  G  N  I  *  S  P  S  *  L  A  R  R  C  K  A  A  C  K  C  K  H  D  H  N  A  D  W  K  Q  V  *  S  G  S  Q  K  G  C  K  H  R  G  R  R  T  I  C  Q  G  K  W  V  D  I  Y  G  G  L  C  Q  N  S  S  E  C  *  R   : G  F  Y  Q  N  S  L  N  N  L  *  E  N  T  G  W  S  V  *  C  I  K  *   : V  L  W  N  K  S  W  I  W  R  Y  S  G  A  F  R  W  K  R  R  S  C  F  T  R  R  G  L  L  Y  L  K  M  D  I  Y  C  S  Q  T  Y  Y  V  P  M  V  V  Y  L  *  F  G  I  A  L  *  F  I  P  F  N  E  R  I  I  Y  V  Q  K  *  V  N  L  V  H  K  R  H  S  F  S  L  C  I  F  C  L  L  S  C </second_frame>
            <third_frame>   L  P  D  P  F  N  S  F  A  G  V  V  P  S  L  R  R  K  I  L  R  H  A  K  I  G  K  V  V  Q  *  F  T  Y  I  Q  T  P  L  R  L  C  K  F  S  R  R  F  F  F  L  S  P  H  H  R  Q  R  R  R  R  G  R  I  Y  R  Y  S  N  Y  *  G  F  V  Y  Y  F  F  R  *  N  I  H  L  Q  L  L  F  S  T  A  Q  T  I  F  S  H  Y  S  F  S  G  I  C  F  S  N  M  S  Y  A  Y  L  F  K  Y  I  I  I  G  D  T   : G  V  G  K  S  C  L  L  L  Q  F  T  D  K  R  F  Q  P  V  H  D  L  T  I  G  V  E  F  G  A  R  M  I  T  I  D  N  K  P  I  K  L  Q  I  W  D  T  :  A  G  Q  E  S  F  R  S  I  T  R  S  Y  Y  R  G  A  A  G  A  L  L  V  Y  D  I  T  R :   R  E  T  F  N  H  L  A  S  W  L  E  D  A  R  Q  H  A  N  A  N  M  T  I  M  L  I  G  N  K  C  D  L  A  H  R  R  A  V  S  T  E  E  G  E  Q  F  A  K  E  N  G  L  I  F  M  E  A  S  A  K  T  A  Q  N  V  E  E  :  A  F  I  R  T  A  S  T  I  Y  K  K  I  Q  D  G  V  F  D  V  S  N  E  :  S  Y  G  I  K  V  G  Y  G  G  I  P  G  P  S  G  G  R  D  G  A  A  S  Q  G  G  G  C  C  T  *  K  W  T  F  I  V  R  K  P  I  M  F  L  W  L  F  I  C  S  L  V  L  L  F  S  L  F  L  L  M  K  G  *  Y  M  C  K  N  K  *  I  W  Y  I  K  D  I  L  F  L  C  A  F  S  V  Y  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25033" stop="24907"/>
                    <exon start="23914" stop="23775"/>
                    <exon start="23528" stop="23446"/>
                    <exon start="22898" stop="22694"/>
                    <exon start="22574" stop="22506"/>
                    <exon start="21272" stop="21180"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIHLQLLFSTAQTIFSHYSFSGICFSNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKENGLIFMEASAKTAQNVEEAFIRTASTIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGAASQGGGCCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25253" e_stop="24709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="25253" e_stop="24709" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25253" stop="24907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25215" stop="25016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25181" stop="24709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGCTGGAGTCGTGCCTTCTCTTCGAAGGAAAATCCTTCGACACGCCAAAATTGGCAAAGTAGTTCAATAATTTACGTATATTCAAACGCCTTTGCGCCTCTGTAAATTCTCCCGTCGTTTCTTCTTTCTCTCTCCGCATCACCGACAGAGAAGAAGAAGAGGAAGGATATACCGATACAGCAATTATTAGGGATTTGTATATTATTTTTTCAGGTAAAATATACATTTACAACTATTGTTTTCTACAGCTCAGACGATATTCAGCCATTACTCTTTCTCCGGAATTTGCTTCTCAAACATGTCTTACGCCTATCTCTTCAAGTATATCATCATCGGCGATACCGGTATATTTTTTTCCTGATTTTTCTGGTTTTATTTGTGTAATTTTATTGTTTAACACCTGATTTGGATCTGATCAATAGGTTCCTGGTGAGTTTGAATTGAACTTAGTTTTTCTTTTCATGAATTTTTAATTATCTCGATCTGGAATAAGGATTTCAATATATGGTAATTCATTTATGCTGCTATGGAAATGTTAAATG</gDNA_template>
            <first_frame> L  C  W  S  R  A  F  S  S  K  E  N  P  S  T  R  Q  N  W  Q  S  S  S  I  I  Y  V  Y  S  N  A  F  A  P  L  *  I  L  P  S  F  L  L  S  L  S  A  S  P  T  E  K  K  K  R  K  D  I  P  I  Q  Q  L  L  G  I  C  I  L  F  F  Q  V  K  Y  T  F  T  T  I  V  F  Y  S  S  D  D  I  Q  P  L  L  F  L  R  N  L  L  L  K  H  V  L  R  L  S  L  Q  V  Y  H  H  R  R  Y  R  Y  I  F  F  L  I  F  L  V  L  F  V  *  F  Y  C  L  T  P  D  L  D  L  I  N  R  F  L  V  S  L  N  *  T  *  F  F  F  S  *  I  F  N  Y  L  D  L  E  *  G  F  Q  Y  M  V  I  H  L  C  C  Y  G  N  V  K   </first_frame>
            <second_frame>  F  A  G  V  V  P  S  L  R  R  K  I  L  R  H  A  K  I  G  K  V  V  Q  *  F  T  Y  I  Q  T  P  L  R  L  C  K  F  S  R  R  F  F  F  L  S  P  H  H  R  Q  R  R  R  R  G  R  I  Y  R  Y  S  N  Y  *  G  F  V  Y  Y  F  F  R  *  N  I  H  L  Q  L  L  F  S  T  A  Q  T  I  F  S  H  Y  S  F  S  G  I  C  F  S  N  M  S  Y  A  Y  L  F  K  Y  I  I  I  G  D  T  G  I  F  F  S  *  F  F  W  F  Y  L  C  N  F  I  V  *  H  L  I  W  I  *  S  I  G  S  W  *  V  *  I  E  L  S  F  S  F  H  E  F  L  I  I  S  I  W  N  K  D  F  N  I  W  *  F  I  Y  A  A  M  E  M  L  N  </second_frame>
            <third_frame>   L  L  E  S  C  L  L  F  E  G  K  S  F  D  T  P  K  L  A  K  *  F  N  N  L  R  I  F  K  R  L  C  A  S  V  N  S  P  V  V  S  S  F  S  L  R  I  T  D  R  E  E  E  E  E  G  Y  T  D  T  A  I  I  R  D  L  Y  I  I  F  S  G  K  I  Y  I  Y  N  Y  C  F  L  Q  L  R  R  Y  S  A  I  T  L  S  P  E  F  A  S  Q  T  C  L  T  P  I  S  S  S  I  S  S  S  A  I  P  V  Y  F  F  P  D  F  S  G  F  I  C  V  I  L  L  F  N  T  *  F  G  S  D  Q  *  V  P  G  E  F  E  L  N  L  V  F  L  F  M  N  F  *  L  S  R  S  G  I  R  I  S  I  Y  G  N  S  F  M  L  L  W  K  C  *  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25188" stop="24847"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNNLRIFKRLCASVNSPVVSSFSLRITDREEEEEGYTDTAIIRDLYIIFSGKIYIYNYCFLQLRRYSAITLSPEFASQTCLTPISSSISSSAIPVYFFPDFSGFICVILLFNT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLf0095A17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25145" stop="24867"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILPSFLLSLSASPTEKKKRKDIPIQQLLGICILFFQVKYTFTTIVFYSSDDIQPLLFLRNLLLKHVLRLSLQVYHHRRYRYIFFLIFLVLFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 98 chains have been computed
$ 
$ memory statistics:
$ 177352 bytes spliced alignments in total
$ 83 spliced alignments have been stored
$ 2136 bytes was the average size of a spliced alignment
$ 16256 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2709 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 99 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:46:28
-->
